Sun Mar 23 16:35:06 UTC 2025  I: starting to build sibelia/experimental/arm64 on jenkins on '2025-03-23 16:34'
Sun Mar 23 16:35:06 UTC 2025  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/63524/console.log
Sun Mar 23 16:35:06 UTC 2025  I: Downloading source for experimental/sibelia=3.0.7+dfsg-4
--2025-03-23 16:35:06--  http://cdn-fastly.deb.debian.org/debian/pool/main/s/sibelia/sibelia_3.0.7%2bdfsg-4.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2156 (2.1K) [text/prs.lines.tag]
Saving to: ‘sibelia_3.0.7+dfsg-4.dsc’

     0K ..                                                    100%  346M=0s

2025-03-23 16:35:06 (346 MB/s) - ‘sibelia_3.0.7+dfsg-4.dsc’ saved [2156/2156]

Sun Mar 23 16:35:06 UTC 2025  I: sibelia_3.0.7+dfsg-4.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: sibelia
Binary: sibelia, sibelia-examples
Architecture: any all
Version: 3.0.7+dfsg-4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: http://bioinf.spbau.ru/sibelia
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/sibelia
Vcs-Git: https://salsa.debian.org/med-team/sibelia.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 12), cmake, libdivsufsort-dev, libboost-dev, libseqan2-dev (= 2.5.0~rc3+dfsg-1), libtclap-dev, libhts-dev
Package-List:
 sibelia deb science optional arch=any
 sibelia-examples deb science optional arch=all
Checksums-Sha1:
 fab5441d7decc4e9dedbf1169549d85241c132cc 4833128 sibelia_3.0.7+dfsg.orig.tar.xz
 6f4addde5d61cc1dd5960d3cdeeb2d77e87e6382 10944 sibelia_3.0.7+dfsg-4.debian.tar.xz
Checksums-Sha256:
 d4dd618fe9f373be8ad90f9b1d670ac8e45a7386d67e28b0d055e1d77f9d7caa 4833128 sibelia_3.0.7+dfsg.orig.tar.xz
 d3ebaa37e8b651f2d4e514ac9bc0d35241b46028aa42204ce8121729eb5f3839 10944 sibelia_3.0.7+dfsg-4.debian.tar.xz
Files:
 38311be6d2eee4d5e4d4a8ccf2d9c85e 4833128 sibelia_3.0.7+dfsg.orig.tar.xz
 911a7c03314a180e74dd61b09556317f 10944 sibelia_3.0.7+dfsg-4.debian.tar.xz
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Sun Mar 23 16:35:06 UTC 2025  I: Checking whether the package is not for us
Sun Mar 23 16:35:06 UTC 2025  I: Starting 1st build on remote node codethink04-arm64.debian.net.
Sun Mar 23 16:35:06 UTC 2025  I: Preparing to do remote build '1' on codethink04-arm64.debian.net.
Sun Mar 23 16:37:33 UTC 2025  I: Deleting $TMPDIR on codethink04-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Mar 23 04:35:08 -12 2025
I: pbuilder-time-stamp: 1742747708
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [sibelia_3.0.7+dfsg-4.dsc]
I: copying [./sibelia_3.0.7+dfsg.orig.tar.xz]
I: copying [./sibelia_3.0.7+dfsg-4.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./sibelia_3.0.7+dfsg-4.dsc: unsupported subcommand
dpkg-source: info: extracting sibelia in sibelia-3.0.7+dfsg
dpkg-source: info: unpacking sibelia_3.0.7+dfsg.orig.tar.xz
dpkg-source: info: unpacking sibelia_3.0.7+dfsg-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libdivsufsort.patch
dpkg-source: info: applying use_debian_packaged_lagan.patch
dpkg-source: info: applying snpeff_is_removed.patch
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying 0005-Upgrade-to-SeqAn-2.5.0.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2448720/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='arm64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
  DISTRIBUTION='experimental'
  HOME='/root'
  HOST_ARCH='arm64'
  IFS=' 	
  '
  INVOCATION_ID='19031db652844fc2b78797a9cfec8d5f'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='2448720'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UUjxj0Wd/pbuilderrc_6Der --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UUjxj0Wd/b1 --logfile b1/build.log sibelia_3.0.7+dfsg-4.dsc'
  SUDO_GID='109'
  SUDO_UID='104'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://192.168.101.4:3128'
I: uname -a
  Linux codethink04-arm64 6.1.0-32-cloud-arm64 #1 SMP Debian 6.1.129-1 (2025-03-06) aarch64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Mar  4 11:20 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2448720/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 12), cmake, libdivsufsort-dev, libboost-dev, libseqan2-dev (= 2.5.0~rc3+dfsg-1), libtclap-dev, libhts-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19921 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on cmake; however:
  Package cmake is not installed.
 pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however:
  Package libdivsufsort-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libboost-dev; however:
  Package libboost-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however:
  Package libseqan2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libtclap-dev; however:
  Package libtclap-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libhts-dev; however:
  Package libhts-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtclap-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 
0 packages upgraded, 109 newly installed, 0 to remove and 0 not upgraded.
Need to get 68.1 MB of archives. After unpacking 383 MB will be used.
The following packages have unmet dependencies:
 pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed
The following actions will resolve these dependencies:

     Install the following packages:                  
1)     libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)]



The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtclap-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 
0 packages upgraded, 110 newly installed, 0 to remove and 0 not upgraded.
Need to get 69.3 MB of archives. After unpacking 396 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB]
Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-7 [868 kB]
Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-3 [337 kB]
Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-3 [103 kB]
Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-3 [43.5 kB]
Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-5 [92.0 kB]
Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-7 [285 kB]
Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB]
Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB]
Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 18 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.6-1 [2268 kB]
Get: 19 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-3 [9526 kB]
Get: 20 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.3+b1 [630 kB]
Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB]
Get: 22 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB]
Get: 23 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB]
Get: 24 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB]
Get: 25 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB]
Get: 26 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 27 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB]
Get: 28 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB]
Get: 29 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB]
Get: 30 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB]
Get: 31 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB]
Get: 32 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB]
Get: 33 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB]
Get: 34 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get: 35 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB]
Get: 36 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 37 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB]
Get: 38 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 39 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB]
Get: 40 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB]
Get: 41 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 42 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 43 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.13.0~rc2-2 [347 kB]
Get: 44 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.0-1 [92.8 kB]
Get: 45 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB]
Get: 46 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB]
Get: 47 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB]
Get: 48 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.6-1 [9912 kB]
Get: 49 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-1+b1 [56.2 kB]
Get: 50 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 51 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB]
Get: 52 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 53 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 54 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 55 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 56 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 57 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 58 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 59 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 60 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 61 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB]
Get: 62 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB]
Get: 63 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB]
Get: 64 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB]
Get: 65 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB]
Get: 66 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB]
Get: 67 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-4.1+b2 [10.6 MB]
Get: 68 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B]
Get: 69 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB]
Get: 70 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB]
Get: 71 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB]
Get: 72 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB]
Get: 73 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.13.0~rc2-2 [341 kB]
Get: 74 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB]
Get: 75 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB]
Get: 76 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.9-2 [452 kB]
Get: 77 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.9-2 [452 kB]
Get: 78 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.8-2 [101 kB]
Get: 79 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB]
Get: 80 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB]
Get: 81 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB]
Get: 82 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB]
Get: 83 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10.1-1 [1325 kB]
Get: 84 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.9-2 [1419 kB]
Get: 85 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB]
Get: 86 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.9+dfsg-2 [305 kB]
Get: 87 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB]
Get: 88 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB]
Get: 89 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB]
Get: 90 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB]
Get: 91 http://deb.debian.org/debian unstable/main arm64 libnghttp3-dev arm64 1.8.0-1 [89.4 kB]
Get: 92 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.11.0-1 [33.9 kB]
Get: 93 http://deb.debian.org/debian unstable/main arm64 libngtcp2-dev arm64 1.11.0-1 [174 kB]
Get: 94 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB]
Get: 95 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get: 96 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB]
Get: 97 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.4.1-1 [3232 kB]
Get: 98 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB]
Get: 99 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-1 [335 kB]
Get: 100 http://deb.debian.org/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.13.0~rc2-2 [473 kB]
Get: 101 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB]
Get: 102 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-1+b1 [51.4 kB]
Get: 103 http://deb.debian.org/debian unstable/main arm64 libdivsufsort3 arm64 2.0.1-6+b1 [39.9 kB]
Get: 104 http://deb.debian.org/debian unstable/main arm64 libdivsufsort-dev arm64 2.0.1-6+b1 [19.1 kB]
Get: 105 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB]
Get: 106 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB]
Get: 107 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.6.4-1 [319 kB]
Get: 108 http://deb.debian.org/debian unstable/main arm64 libhts-dev arm64 1.21+ds-1 [1658 kB]
Get: 109 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB]
Get: 110 http://deb.debian.org/debian unstable/main arm64 libtclap-dev arm64 1.2.5-1+b1 [3359 kB]
Fetched 69.3 MB in 1s (87.8 MB/s)
Preconfiguring packages ...
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(Reading database ... 19921 files and directories currently installed.)
Preparing to unpack .../000-libproc2-0_2%3a4.0.4-7_arm64.deb ...
Unpacking libproc2-0:arm64 (2:4.0.4-7) ...
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Unpacking procps (2:4.0.4-7) ...
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Unpacking sensible-utils (0.0.24) ...
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Unpacking libmagic-mgc (1:5.46-3) ...
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Unpacking libmagic1t64:arm64 (1:5.46-3) ...
Selecting previously unselected package file.
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Unpacking file (1:5.46-3) ...
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Unpacking gettext-base (0.23.1-1) ...
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Unpacking libuchardet0:arm64 (0.0.8-1+b2) ...
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Unpacking groff-base (1.23.0-7) ...
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Unpacking bsdextrautils (2.40.4-5) ...
Selecting previously unselected package libpipeline1:arm64.
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Unpacking libpipeline1:arm64 (1.5.8-1) ...
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Unpacking man-db (2.13.0-1) ...
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Unpacking m4 (1.4.19-7) ...
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Unpacking autotools-dev (20220109.1) ...
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Unpacking automake (1:1.17-4) ...
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Unpacking autopoint (0.23.1-1) ...
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Unpacking cmake-data (3.31.6-1) ...
Selecting previously unselected package libicu76:arm64.
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Unpacking libicu76:arm64 (76.1-3) ...
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Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.3+b1) ...
Selecting previously unselected package libarchive13t64:arm64.
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Unpacking libarchive13t64:arm64 (3.7.4-1.1) ...
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Unpacking libbrotli1:arm64 (1.1.0-2+b7) ...
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Unpacking libkrb5support0:arm64 (1.21.3-5) ...
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Unpacking libcom-err2:arm64 (1.47.2-1+b1) ...
Selecting previously unselected package libk5crypto3:arm64.
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Unpacking libk5crypto3:arm64 (1.21.3-5) ...
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Unpacking libkeyutils1:arm64 (1.6.3-4) ...
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Selecting previously unselected package libsasl2-modules-db:arm64.
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Unpacking libldap2:arm64 (2.6.9+dfsg-2) ...
Selecting previously unselected package libnghttp2-14:arm64.
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Unpacking cmake (3.31.6-1) ...
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Unpacking dwz (0.15-1+b1) ...
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Unpacking gettext (0.23.1-1) ...
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Unpacking debhelper (13.24.1) ...
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Selecting previously unselected package libkadm5srv-mit12:arm64.
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Unpacking libkadm5srv-mit12:arm64 (1.21.3-5) ...
Selecting previously unselected package krb5-multidev:arm64.
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Selecting previously unselected package libngtcp2-16:arm64.
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Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64.
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Selecting previously unselected package libcurl3t64-gnutls:arm64.
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Selecting previously unselected package libevent-2.1-7t64:arm64.
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Selecting previously unselected package libunbound8:arm64.
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Selecting previously unselected package libgnutls-openssl27t64:arm64.
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Selecting previously unselected package libidn2-dev:arm64.
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I: Running cd /build/reproducible-path/sibelia-3.0.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../sibelia_3.0.7+dfsg-4_source.changes
dpkg-buildpackage: info: source package sibelia
dpkg-buildpackage: info: source version 3.0.7+dfsg-4
dpkg-buildpackage: info: source distribution experimental
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
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CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
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/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/outputgenerator.cpp.o -MF CMakeFiles/Sibelia.dir/outputgenerator.cpp.o.d -o CMakeFiles/Sibelia.dir/outputgenerator.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/outputgenerator.cpp
[ 40%] Building CXX object CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/blockfinder.cpp.o -MF CMakeFiles/Sibelia.dir/blockfinder.cpp.o.d -o CMakeFiles/Sibelia.dir/blockfinder.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.cpp
[ 45%] Building CXX object CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/blockinstance.cpp.o -MF CMakeFiles/Sibelia.dir/blockinstance.cpp.o.d -o CMakeFiles/Sibelia.dir/blockinstance.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.cpp
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o -MF CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o.d -o CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/bifurcationstorage.cpp
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o -MF CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o.d -o CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp
[ 50%] Building CXX object CMakeFiles/Sibelia.dir/dnasequence.cpp.o
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/dnasequence.cpp.o -MF CMakeFiles/Sibelia.dir/dnasequence.cpp.o.d -o CMakeFiles/Sibelia.dir/dnasequence.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.cpp
[ 55%] Building CXX object CMakeFiles/Sibelia.dir/edge.cpp.o
[ 60%] Building CXX object CMakeFiles/Sibelia.dir/fasta.cpp.o
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/edge.cpp.o -MF CMakeFiles/Sibelia.dir/edge.cpp.o.d -o CMakeFiles/Sibelia.dir/edge.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/edge.cpp
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/fasta.cpp.o -MF CMakeFiles/Sibelia.dir/fasta.cpp.o.d -o CMakeFiles/Sibelia.dir/fasta.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/fasta.cpp
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/util.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/util.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/fasta.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/hashing.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/fasta.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/bifurcationstorage.h:11,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/bifurcationstorage.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   37 |                 std::auto_ptr<DNASequence> sequence_;
      |                      ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   38 |                 std::auto_ptr<BifurcationStorage> bifStorage_;
      |                      ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/util.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/outputgenerator.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/fasta.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/edge.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/fasta.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/fasta.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 65%] Building CXX object CMakeFiles/Sibelia.dir/serialization.cpp.o
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/serialization.cpp.o -MF CMakeFiles/Sibelia.dir/serialization.cpp.o.d -o CMakeFiles/Sibelia.dir/serialization.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/serialization.cpp
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   37 |                 std::auto_ptr<DNASequence> sequence_;
      |                      ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   38 |                 std::auto_ptr<BifurcationStorage> bifStorage_;
      |                      ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   37 |                 std::auto_ptr<DNASequence> sequence_;
      |                      ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   38 |                 std::auto_ptr<BifurcationStorage> bifStorage_;
      |                      ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   37 |                 std::auto_ptr<DNASequence> sequence_;
      |                      ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   38 |                 std::auto_ptr<BifurcationStorage> bifStorage_;
      |                      ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   37 |                 std::auto_ptr<DNASequence> sequence_;
      |                      ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   38 |                 std::auto_ptr<BifurcationStorage> bifStorage_;
      |                      ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   37 |                 std::auto_ptr<DNASequence> sequence_;
      |                      ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   38 |                 std::auto_ptr<BifurcationStorage> bifStorage_;
      |                      ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
[ 70%] Building CXX object CMakeFiles/Sibelia.dir/synteny.cpp.o
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/synteny.cpp.o -MF CMakeFiles/Sibelia.dir/synteny.cpp.o.d -o CMakeFiles/Sibelia.dir/synteny.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/synteny.cpp
[ 75%] Building CXX object CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o -MF CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o.d -o CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.cpp
[ 80%] Building CXX object CMakeFiles/Sibelia.dir/platform.cpp.o
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/platform.cpp.o -MF CMakeFiles/Sibelia.dir/platform.cpp.o.d -o CMakeFiles/Sibelia.dir/platform.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/platform.cpp
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/serialization.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
[ 85%] Building CXX object CMakeFiles/Sibelia.dir/stranditerator.cpp.o
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/stranditerator.cpp.o -MF CMakeFiles/Sibelia.dir/stranditerator.cpp.o.d -o CMakeFiles/Sibelia.dir/stranditerator.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/stranditerator.cpp
[ 90%] Building CXX object CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o -MF CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o.d -o CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   37 |                 std::auto_ptr<DNASequence> sequence_;
      |                      ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   38 |                 std::auto_ptr<BifurcationStorage> bifStorage_;
      |                      ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/synteny.cpp:9:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/fasta.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/postprocessor.h:13,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/sibelia.cpp:8:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /usr/include/tclap/SwitchArg.h:29,
                 from /usr/include/tclap/CmdLine.h:27,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/sibelia.cpp:7:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:11,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/postprocessor.h:14:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:11,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/util.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/sibelia.cpp:9:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   37 |                 std::auto_ptr<DNASequence> sequence_;
      |                      ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
                 from /usr/include/seqan/basic/test_system.h:53,
                 from /usr/include/seqan/basic.h:65,
                 from /usr/include/seqan/align.h:55,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/postprocessor.h:10:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   38 |                 std::auto_ptr<BifurcationStorage> bifStorage_;
      |                      ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockfinder.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   37 |                 std::auto_ptr<DNASequence> sequence_;
      |                      ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   38 |                 std::auto_ptr<BifurcationStorage> bifStorage_;
      |                      ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/test/../common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/sibelia.cpp: In function ‘int main(int, char**)’:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/sibelia.cpp:239:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  239 |                 std::auto_ptr<SyntenyFinder::BlockFinder> finder(inRAM.isSet() ? new SyntenyFinder::BlockFinder(chrList) : new SyntenyFinder::BlockFinder(chrList, tempDir));
      |                      ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/fasta.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/postprocessor.h:13,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/postprocessor.cpp:9:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/platform.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/platform.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/fasta.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/stranditerator.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/test/../common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/test/../common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.h:11:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/test/../unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/fasta.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/hashing.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:10,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp:7:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[ 95%] Building CXX object CMakeFiles/Sibelia.dir/resource.cpp.o
/usr/bin/c++  -I/build/reproducible-path/sibelia-3.0.7+dfsg/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT CMakeFiles/Sibelia.dir/resource.cpp.o -MF CMakeFiles/Sibelia.dir/resource.cpp.o.d -o CMakeFiles/Sibelia.dir/resource.cpp.o -c /build/reproducible-path/sibelia-3.0.7+dfsg/src/resource.cpp
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:65,
                 from /usr/include/c++/14/algorithm:60,
                 from /usr/include/seqan/align.h:53,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/postprocessor.h:10:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/blockinstance.h:11,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/postprocessor.h:14:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
In file included from /build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:12:
/build/reproducible-path/sibelia-3.0.7+dfsg/src/unrolledlist.h:36:45: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   36 |                 class iterator: public std::iterator<std::bidirectional_iterator_tag, T>
      |                                             ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/dnasequence.h:51:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
   51 |                 class StrandIterator: public std::iterator<std::bidirectional_iterator_tag, char, size_t>
      |                                                   ^~~~~~~~
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   37 |                 std::auto_ptr<DNASequence> sequence_;
      |                      ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:20:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   38 |                 std::auto_ptr<BifurcationStorage> bifStorage_;
      |                      ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9,
                 from /usr/include/boost/bind/bind.hpp:24,
                 from /usr/include/boost/bind.hpp:29,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:31,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/resource.h:6,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/resource.cpp:6:
/usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
   36 | BOOST_PRAGMA_MESSAGE(
      | ^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:104:51: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations]
  104 |                 struct FancyIterator: public std::iterator<std::forward_iterator_tag, ReturnType>
      |                                                   ^~~~~~~~
In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66,
                 from /usr/include/c++/14/string:47,
                 from /build/reproducible-path/sibelia-3.0.7+dfsg/src/common.h:12:
/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here
  127 |     struct _GLIBCXX17_DEPRECATED iterator
      |                                  ^~~~~~~~
[100%] Linking CXX executable Sibelia
/usr/bin/cmake -E cmake_link_script CMakeFiles/Sibelia.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/sibelia-3.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/Sibelia.dir/link.d CMakeFiles/Sibelia.dir/sibelia.cpp.o CMakeFiles/Sibelia.dir/postprocessor.cpp.o CMakeFiles/Sibelia.dir/indexedsequence.cpp.o CMakeFiles/Sibelia.dir/util.cpp.o CMakeFiles/Sibelia.dir/outputgenerator.cpp.o CMakeFiles/Sibelia.dir/blockfinder.cpp.o CMakeFiles/Sibelia.dir/blockinstance.cpp.o CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o CMakeFiles/Sibelia.dir/dnasequence.cpp.o CMakeFiles/Sibelia.dir/edge.cpp.o CMakeFiles/Sibelia.dir/fasta.cpp.o CMakeFiles/Sibelia.dir/serialization.cpp.o CMakeFiles/Sibelia.dir/synteny.cpp.o CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o CMakeFiles/Sibelia.dir/platform.cpp.o CMakeFiles/Sibelia.dir/stranditerator.cpp.o CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o CMakeFiles/Sibelia.dir/resource.cpp.o -o Sibelia  -ldivsufsort
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-- Install configuration: "Release"
-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/bin/Sibelia
-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/NEWS.md
-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/ANNOTATION.md
-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/README.md
-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/USAGE.md
-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/INSTALL.md
-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/SIBELIA.md
-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/C-SIBELIA.md
-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/LICENSE.txt
-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples
-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia
-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus
-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/RN4220.fasta
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-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/NCTC8325.fasta
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-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus
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-- Installing: /build/reproducible-path/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos
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dpkg-deb: building package 'sibelia' in '../sibelia_3.0.7+dfsg-4_arm64.deb'.
dpkg-deb: building package 'sibelia-dbgsym' in '../sibelia-dbgsym_3.0.7+dfsg-4_arm64.deb'.
dpkg-deb: building package 'sibelia-examples' in '../sibelia-examples_3.0.7+dfsg-4_all.deb'.
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I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/2448720 and its subdirectories
I: Current time: Sun Mar 23 04:37:31 -12 2025
I: pbuilder-time-stamp: 1742747851
Sun Mar 23 16:37:33 UTC 2025  I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net.
Sun Mar 23 16:37:33 UTC 2025  I: Preparing to do remote build '2' on codethink03-arm64.debian.net.
Sun Mar 23 16:41:49 UTC 2025  I: Deleting $TMPDIR on codethink03-arm64.debian.net.
Sun Mar 23 16:41:49 UTC 2025  I: sibelia_3.0.7+dfsg-4_arm64.changes:
Format: 1.8
Date: Mon, 25 Nov 2024 15:20:04 +0100
Source: sibelia
Binary: sibelia sibelia-dbgsym sibelia-examples
Architecture: arm64 all
Version: 3.0.7+dfsg-4
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
 sibelia    - comparative genomics tool
 sibelia-examples - comparative genomics tool (example data)
Changes:
 sibelia (3.0.7+dfsg-4) experimental; urgency=medium
 .
   * Team upload.
   * d/control: Experimental rebuild using the 3rd release candidate of
     SeqAn 2.5.0
   * Added patch for the explicit seqan2 namespace.
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 17f6747c72bba28119e5207d3df6a87b6b6885960b9091f2e10b0ceeddd8e966 7704828 sibelia-examples_3.0.7+dfsg-4_all.deb
 d37da5ebaf8d195650f081d6df17a9bd4b1efead7b3162eaa2c3a9bad719308f 7751 sibelia_3.0.7+dfsg-4_arm64.buildinfo
 d5909aba15dcd1afce995d8f6cb4ff39b41119fb16b8dd27bdd6527890be9ef5 299084 sibelia_3.0.7+dfsg-4_arm64.deb
Files:
 f6e7682e3cee264bf52ce4f9c6b87206 3696388 debug optional sibelia-dbgsym_3.0.7+dfsg-4_arm64.deb
 3a43e52488f008b9e6ab16aad211184e 7704828 science optional sibelia-examples_3.0.7+dfsg-4_all.deb
 e0a6086d2bb6e1c0faf17640965541eb 7751 science optional sibelia_3.0.7+dfsg-4_arm64.buildinfo
 58660859974b9aa3ffaec441808bf542 299084 science optional sibelia_3.0.7+dfsg-4_arm64.deb
Sun Mar 23 16:41:50 UTC 2025  I: diffoscope 291 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_7-63524.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UUjxj0Wd/sibelia_3.0.7+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UUjxj0Wd/sibelia_3.0.7+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UUjxj0Wd/sibelia_3.0.7+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UUjxj0Wd/b1/sibelia_3.0.7+dfsg-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.UUjxj0Wd/b2/sibelia_3.0.7+dfsg-4_arm64.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     diffoscope.comparators.binary.FilesystemFile

## main (total time: 0.003s)
       0.003s      2 calls    outputs
       0.000s      1 call     cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 226ms
CPU time consumed: 227ms
Sun Mar 23 16:41:51 UTC 2025  I: diffoscope 291 found no differences in the changes files, and a .buildinfo file also exists.
Sun Mar 23 16:41:51 UTC 2025  I: sibelia from experimental built successfully and reproducibly on arm64.
Sun Mar 23 16:41:52 UTC 2025  I: Submitting .buildinfo files to external archives:
Sun Mar 23 16:41:52 UTC 2025  I: Submitting 12K	b1/sibelia_3.0.7+dfsg-4_arm64.buildinfo.asc
Sun Mar 23 16:41:53 UTC 2025  I: Submitting 12K	b2/sibelia_3.0.7+dfsg-4_arm64.buildinfo.asc
Sun Mar 23 16:41:53 UTC 2025  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sun Mar 23 16:41:53 UTC 2025  I: Done submitting .buildinfo files.
Sun Mar 23 16:41:53 UTC 2025  I: Removing signed sibelia_3.0.7+dfsg-4_arm64.buildinfo.asc files:
removed './b1/sibelia_3.0.7+dfsg-4_arm64.buildinfo.asc'
removed './b2/sibelia_3.0.7+dfsg-4_arm64.buildinfo.asc'