Tue Aug 26 02:59:42 UTC 2025 I: starting to build btllib/forky/amd64 on jenkins on '2025-08-26 02:59' Tue Aug 26 02:59:42 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_22/56418/console.log Tue Aug 26 02:59:42 UTC 2025 I: Downloading source for forky/btllib=1.7.5+dfsg-2 --2025-08-26 02:59:42-- http://deb.debian.org/debian/pool/main/b/btllib/btllib_1.7.5%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2150 (2.1K) [text/prs.lines.tag] Saving to: ‘btllib_1.7.5+dfsg-2.dsc’ 0K .. 100% 229M=0s 2025-08-26 02:59:42 (229 MB/s) - ‘btllib_1.7.5+dfsg-2.dsc’ saved [2150/2150] Tue Aug 26 02:59:42 UTC 2025 I: btllib_1.7.5+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: btllib Binary: libbtllib-dev, btllib-tools Architecture: any Version: 1.7.5+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/bcgsc/btllib Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/btllib Vcs-Git: https://salsa.debian.org/med-team/btllib.git Testsuite: autopkgtest Testsuite-Triggers: g++ Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-exec, meson, ninja-build, libcpptoml-dev, libsdsl-dev, libargparse-dev, samtools Package-List: btllib-tools deb science optional arch=any libbtllib-dev deb libdevel optional arch=any Checksums-Sha1: db6b910ebead27bbd49cb215f3e3792b26b5381b 252108 btllib_1.7.5+dfsg.orig.tar.xz 793db4b17b31265377f9d6832250b8d4564bc573 4664 btllib_1.7.5+dfsg-2.debian.tar.xz Checksums-Sha256: af5381c1a310ef3ade771be2e28c22fe822976d73d1154c83a8f96827c65cbbd 252108 btllib_1.7.5+dfsg.orig.tar.xz 051d02bcaf22f286d7517b56714c57c2d89b978c438f9e75b4ece232149b26fd 4664 btllib_1.7.5+dfsg-2.debian.tar.xz Files: 25fe130dda560d85551b420e459e8ae9 252108 btllib_1.7.5+dfsg.orig.tar.xz 55b04fdeeb5a31de571c2cc4ff526e71 4664 btllib_1.7.5+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmf2ZbUACgkQPCZ2P2xn 5uLfQw//U339t78n6sH4+DPSCifb2sm3pomSSZwZVSEVv+miqnuPFafslloQ5OC8 /hKWGil6PIaJimnCy5Y+CFdlolu9IJrbxFtUXL0WuUIWl0iLZl9rRLvQE0hQTDZA ZIYui/iVdW8q0ylo9k7tEoWd8ZDTKmRHfi3ayl7WoPlDbLyoqDUY7E/0rxKzNTWt XoSRziSagA6un5CO1HQ0RzGri7ddmAJyIvixeyk3B5fgavofd55tnwW9VQyCwDk1 FP0p1+ux2dfAFng0WkDr4kWDty49j3IISYNkNCc7ltJzSlfnpradEKSaNqIjEr+i oxIA0AnBCusrJNNfDZLMPFMM4vLjxN8KxSHhiirJSV6NOX6Vp//xD/zhL7LapAXH 2kmLRNMU1a0E0jSjJ1/iI//n3xefcVWIVMSVabUmFksj713/ZlmPuff19mP1KDxW ltxvgwKJWsk+pPpIAerhYEnEic483EbCU+e4CREaMGN4dHrZXu6P98M74smlDDeG b0qkHO1Rs23DlHgO0SwfYZlFHb1/c76JGwqAwmTya5a1BjIWBSuQlfs9IwznvPfn crSSxXBORGuJctjZ1/jwGe9xFJx6rMGfHiMmGGOZiR8n5hvDwThwYK5F+PGcM9u+ 6paHQMcabraYAaN1RGUrElH7qk2pmoh6ev2a0D7OYWL2gs471YA= =Rjio -----END PGP SIGNATURE----- Tue Aug 26 02:59:42 UTC 2025 I: Checking whether the package is not for us Tue Aug 26 02:59:42 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Tue Aug 26 02:59:42 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Tue Aug 26 03:02:10 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 27 21:22:44 -12 2026 I: pbuilder-time-stamp: 1790587364 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [btllib_1.7.5+dfsg-2.dsc] I: copying [./btllib_1.7.5+dfsg.orig.tar.xz] I: copying [./btllib_1.7.5+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./btllib_1.7.5+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting btllib in btllib-1.7.5+dfsg dpkg-source: info: unpacking btllib_1.7.5+dfsg.orig.tar.xz dpkg-source: info: unpacking btllib_1.7.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying find_object_files_at_right_loc.patch dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying python3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/756044/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='8574f02f5aed4b079849a13ce3c1b435' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='756044' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UZ2I7YBi/pbuilderrc_Z5jV --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UZ2I7YBi/b1 --logfile b1/build.log btllib_1.7.5+dfsg-2.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/756044/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-exec, meson, ninja-build, libcpptoml-dev, libsdsl-dev, libargparse-dev, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19855 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on ninja-build; however: Package ninja-build is not installed. pbuilder-satisfydepends-dummy depends on libcpptoml-dev; however: Package libcpptoml-dev is not installed. pbuilder-satisfydepends-dummy depends on libsdsl-dev; however: Package libsdsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libargparse-dev; however: Package libargparse-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libargparse-dev{a} libbrotli1{a} libcom-err2{a} libcpptoml-dev{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjs-d3{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsdsl-dev{a} libsdsl3{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 26.5 MB of archives. After unpacking 101 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.6-1 [864 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.6-1 [2218 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.6-1 [1959 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.6-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 architecture-properties amd64 0.2.6 [2336 B] Get: 26 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.25 [91.6 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-4 [539 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 37 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.1 [640 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 debhelper all 13.25 [937 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 dh-exec amd64 0.30 [25.6 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libargparse-dev amd64 3.2-1 [20.2 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libcpptoml-dev all 0.1.1-3 [180 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 57 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.15.0-1 [385 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libdivsufsort3 amd64 2.0.1-6+b1 [45.9 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libdivsufsort-dev amd64 2.0.1-6+b1 [19.1 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libsdsl3 amd64 2.1.1+dfsg-5 [214 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libsdsl-dev amd64 2.1.1+dfsg-5 [451 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 ninja-build amd64 1.12.1-1 [142 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.14.1-1 [91.3 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 86 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 meson all 1.7.0-1 [639 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 samtools amd64 1.21-1 [667 kB] Fetched 26.5 MB in 5s (4836 kB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.6-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.6-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.6-1_amd64.deb ... Unpacking python3.13 (3.13.6-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/btllib-1.7.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../btllib_1.7.5+dfsg-2_source.changes dpkg-buildpackage: info: source package btllib dpkg-buildpackage: info: source version 1.7.5+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Dpython.bytecompile=-1 The Meson build system Version: 1.7.0 Source dir: /build/reproducible-path/btllib-1.7.5+dfsg Build dir: /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu Build type: native build Project name: btllib Project version: 1.7.5 C++ compiler for the host machine: c++ (gcc 14.3.0 "c++ (Debian 14.3.0-5) 14.3.0") C++ linker for the host machine: c++ ld.bfd 2.45 Host machine cpu family: x86_64 Host machine cpu: x86_64 Configuring config.hpp using configuration Run-time dependency threads found: YES Run-time dependency OpenMP found: YES 4.5 Program samtools found: YES (/usr/bin/samtools) Program gzip found: YES (/usr/bin/gzip) Program xz found: YES (/usr/bin/xz) Program bzip2 found: YES (/usr/bin/bzip2) Program tar found: YES (/usr/bin/tar) Program gcovr found: NO Program swig found: NO Program doxygen found: NO WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in meson 2.0. See also: https://github.com/mesonbuild/meson/issues/9300 Program python3 found: YES (/usr/bin/python3) Program python3-config found: NO Message: python3-config not found, skipping Python wrappers. Build targets in project: 28 btllib 1.7.5 User defined options buildtype : plain libdir : lib/x86_64-linux-gnu localstatedir : /var prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja dh_auto_build cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j42 -v [1/57] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o.d -o 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libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_sam_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_sam_module.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/src/btllib/seq_reader_sam_module.cpp [7/57] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_aahash.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_aahash.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_aahash.cpp.o -c 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-I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/data_stream_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_data_stream.cpp.o -MF tests/data_stream_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_data_stream.cpp.o.d -o tests/data_stream_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_data_stream.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/tests/data_stream.cpp [18/57] c++ -Itests/seq_reader_sam_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 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-fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_bloom_filter.cpp.o -MF tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_bloom_filter.cpp.o.d -o tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/tests/bloom_filter.cpp [25/57] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_process_pipeline.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_process_pipeline.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_process_pipeline.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/src/btllib/process_pipeline.cpp [26/57] c++ -Itests/seq_writer_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ 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-Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/randseq_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_randseq.cpp.o -MF tests/randseq_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_randseq.cpp.o.d -o tests/randseq_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_randseq.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/tests/randseq.cpp [31/57] c++ -Irecipes/indexlr.p -Irecipes -I../recipes -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. 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recipes/randseq.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_randseq.cpp.o -MF recipes/randseq.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_randseq.cpp.o.d -o recipes/randseq.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_randseq.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/recipes/randseq.cpp [33/57] c++ -Itests/indexlr_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/indexlr_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_indexlr.cpp.o -MF tests/indexlr_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_indexlr.cpp.o.d -o tests/indexlr_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_indexlr.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/tests/indexlr.cpp [34/57] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_bloom_filter.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_bloom_filter.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/src/btllib/bloom_filter.cpp [35/57] rm -f libbtllib.a && gcc-ar csrD libbtllib.a libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_status.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_cstring.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_bloom_filter.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_randseq.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_util.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_process_pipeline.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_fasta_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_data_stream.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_writer.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_fastq_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_sam_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_aahash.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o [36/57] c++ -o tests/seq_test tests/seq_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [37/57] c++ -o tests/util_test tests/util_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_util.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [38/57] c++ -o tests/cstring_test tests/cstring_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_cstring.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [39/57] c++ -o tests/data_stream_test tests/data_stream_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_data_stream.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [40/57] c++ -o tests/seq_reader_fastq_module_test tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_fastq_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [41/57] c++ -o tests/nthash_test tests/nthash_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_nthash.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [42/57] c++ -o tests/randseq_test tests/randseq_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_randseq.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [43/57] c++ -o tests/seq_reader_multiline_fasta_module_test tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [44/57] c++ -o tests/seq_reader_fasta_module_test tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_fasta_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [45/57] c++ -o tests/seq_reader_sam_module_test tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_sam_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [46/57] c++ -o tests/aahash_test tests/aahash_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_aahash.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [47/57] c++ -o recipes/randseq recipes/randseq.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_randseq.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [48/57] c++ -o tests/seq_writer_test tests/seq_writer_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_writer.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [49/57] c++ -o tests/indexlr_test tests/indexlr_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_indexlr.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [50/57] c++ -o tests/bloom_filter_test tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [51/57] c++ -o tests/counting_bloom_filter_test tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_counting_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [52/57] c++ -o recipes/indexlr recipes/indexlr.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_indexlr.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [53/57] c++ -o tests/seq_reader_multiline_fastq_module_test tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [54/57] c++ -Irecipes/mi_bf_generate.p -Irecipes -I../recipes -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ recipes/mi_bf_generate.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_mi_bloom_filter.cpp.o -MF recipes/mi_bf_generate.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_mi_bloom_filter.cpp.o.d -o recipes/mi_bf_generate.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_mi_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/recipes/mi_bloom_filter.cpp [55/57] c++ -Itests/mi_bloom_filter_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/mi_bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_mi_bloom_filter.cpp.o -MF tests/mi_bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_mi_bloom_filter.cpp.o.d -o tests/mi_bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_mi_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/tests/mi_bloom_filter.cpp [56/57] c++ -o recipes/mi_bf_generate recipes/mi_bf_generate.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_mi_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [57/57] c++ -o tests/mi_bloom_filter_test tests/mi_bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_mi_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp debian/rules execute_before_dh_auto_test make[1]: Entering directory '/build/reproducible-path/btllib-1.7.5+dfsg' cp -a tests/ obj-*/ make[1]: Leaving directory '/build/reproducible-path/btllib-1.7.5+dfsg' dh_auto_test cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=42 meson test --verbose ninja: Entering directory `/build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu' ninja: no work to do. 1/17 seq RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=41 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_test 2/17 cstring RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=148 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/cstring_test 3/17 bloom_filter RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=53 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/bloom_filter_test 4/17 randseq RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=227 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/randseq_test 5/17 util RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=168 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/util_test 6/17 seq_reader_fasta_module RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=218 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_reader_fasta_module_test 7/17 seq_reader_multiline_fastq_module RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=210 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_reader_multiline_fastq_module_test 8/17 data_stream RUNNING >>> MALLOC_PERTURB_=249 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/data_stream_test 9/17 seq_writer RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=126 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_writer_test 10/17 seq_reader_fastq_module RUNNING >>> MALLOC_PERTURB_=22 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_reader_fastq_module_test 11/17 indexlr RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=7 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/indexlr_test 12/17 nthash RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=136 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/nthash_test 13/17 seq_reader_sam_module RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=132 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_reader_sam_module_test 14/17 counting_bloom_filter RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=184 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/counting_bloom_filter_test 15/17 aahash RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=150 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/aahash_test 16/17 seq_reader_multiline_fasta_module RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=198 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_reader_multiline_fasta_module_test 17/17 mi_bloom_filter RUNNING >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=186 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/mi_bloom_filter_test 1/17 seq OK 0.29s 2/17 cstring OK 0.28s 5/17 util OK 0.25s 3/17 bloom_filter OK 0.28s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Testing BloomFilter Testing KmerBloomFilter Testing SeedBloomFilter Testing KmerBloomFilter with multiple threads False positives = 0 ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 4/17 randseq OK 0.27s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: ./tests/randseq.cpp: Testing DNA sequence generation ./tests/randseq.cpp: Testing RNA sequence generation ./tests/randseq.cpp: Testing random seed functionality ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 12/17 nthash OK 0.12s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: ./tests/nthash.cpp: Testing k-mer hash values ./tests/nthash.cpp: Testing k-mer rolling ./tests/nthash.cpp: Testing k-mer rolling vs. base hash values ./tests/nthash.cpp: Testing canonical hashing ./tests/nthash.cpp: Testing k-mer back rolling ./tests/nthash.cpp: Testing k-mer peeking ./tests/nthash.cpp: Testing skipping Ns ./tests/nthash.cpp: Testing base substitution ./tests/nthash.cpp: Testing RNA ./tests/nthash.cpp: Testing spaced seed hash values ./tests/nthash.cpp: Testing spaced seeds ./tests/nthash.cpp: Testing spaced seed back roll ./tests/nthash.cpp: Testing canonical hashing in spaced seeds ./tests/nthash.cpp: Testing copying SeedNtHash objects ./tests/nthash.cpp: Testing BlindSeedNtHash ./tests/nthash.cpp: Testing BlindSeedNtHash roll back ./tests/nthash.cpp: Testing BlindSeedNtHash copy constructor ./tests/nthash.cpp: Testing k-mer vs. full-care spaced seed hashing ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 15/17 aahash OK 0.07s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: ./tests/aahash.cpp: Testing Level 1 hashing ./tests/aahash.cpp: Testing Level 2 hashing ./tests/aahash.cpp: Testing Level 3 hashing ./tests/aahash.cpp: Testing Test seed parse ./tests/aahash.cpp: Testing multi-level hashing ./tests/aahash.cpp: Testing Nonequivalence ./tests/aahash.cpp: Testing Level 2 equivalence ./tests/aahash.cpp: Testing Level 3 equivalence ./tests/aahash.cpp: Testing Mutli-level equivalence ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 8/17 data_stream OK 0.21s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Test .gz write Test .gz read Test .xz write Test .xz read ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 6/17 seq_reader_fasta_module OK 0.26s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test small FASTA Iteration 2 Test small FASTA Iteration 3 Test small FASTA Iteration 1 Test small FAA Iteration 2 Test small FAA Iteration 3 Test small FAA ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 14/17 counting_bloom_filter OK 0.16s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Testing CountingBloomFilter Testing KmerCountingBloomFilter Testing KmerCountingBloomfilter with multiple threads False positives = 0 Seqs with more than 1 presence = 96 Testing CBF element deletion Testing CBF element initialization ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 11/17 indexlr OK 0.29s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Testing on empty file [2026-09-27 21:24:43][WARNING] ./tests/empty.fa is empty. Testing without Bloom filters Testing quality filtering Testing with Bloom filters ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 7/17 seq_reader_multiline_fastq_module OK 0.48s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test multiline FASTQ Test random multiline FASTQ file SSCAIFGYQUKZJKEXVORSTGSWWJJIFVXGWPYHCWOJSHOZXBJQXSZYJWTEFVPUSHCL Iteration 2 Test multiline FASTQ Test random multiline FASTQ file KGFEGWRFOFEDNDRLWMVYHROTTTGSWYSIPTWGYZGYIBZIWEYEVLUFNIAQGXKQKCRO Iteration 3 Test multiline FASTQ Test random multiline FASTQ file CXCYKTRXFTZTTLCZTBESWYIWNTVGWRVYZMKREKOYNROAAVWUESDGBUTCQBYAVXVZ ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 17/17 mi_bloom_filter OK 0.31s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Testing multi-indexed BloomFilter multi-indexed BloomFilter ID count test Testing ID counting Testing multi-indexed BloomFilter random sampling Testing multi-indexed BloomFilter saving. Testing multi-indexed BloomFilter reading. [2026-09-27 21:24:43][INFO] MIBloomFilter: Bit vector size: 268435456 Popcount: 986 Testing multi-indexed BloomFilter saturation ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 16/17 seq_reader_multiline_fasta_module OK 0.39s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test multiline FASTA Test random multiline FASTA file BKNMSIEEOPAYTIGGBSVXYRPENHROPFKRKDERFAPXDKWDXYOVANTHGOMDDOYPXTZW Iteration 2 Test multiline FASTA Test random multiline FASTA file ZXKSEFVSZHCWCCJAFRMYYKQTTAYNQEVDVNJRWAOJWPRXWBNVUZQXNDVPKBCZRPIL Iteration 3 Test multiline FASTA Test random multiline FASTA file GEPEZYVDHCJQPPRPNRRCNRBYWZZJEAVKNISDDYAZURBGCAUUNYWPDZUESYXNXHBC Iteration 1 Test multiline FAA Iteration 2 Test multiline FAA Iteration 3 Test multiline FAA ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 13/17 seq_reader_sam_module OK 0.59s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test small SAM [2026-09-27 21:24:43][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 2 reads Test larger SAM file [2026-09-27 21:24:43][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 75 reads Iteration 2 Test small SAM [2026-09-27 21:24:43][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 2 reads Test larger SAM file [2026-09-27 21:24:43][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 75 reads Iteration 3 Test small SAM [2026-09-27 21:24:43][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 2 reads Test larger SAM file [2026-09-27 21:24:44][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 75 reads ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 10/17 seq_reader_fastq_module OK 1.27s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test small FASTA and FASTQ simultaneously Test larger randomly generated FASTQ file Test larger randomly generated FASTQ file in parallel Test larger randomly generated FASTQ file in parallel (different syntax) Test larger randomly generated FASTQ file with read_block Iteration 2 Test small FASTA and FASTQ simultaneously Test larger randomly generated FASTQ file Test larger randomly generated FASTQ file in parallel Test larger randomly generated FASTQ file in parallel (different syntax) Test larger randomly generated FASTQ file with read_block Iteration 3 Test small FASTA and FASTQ simultaneously Test larger randomly generated FASTQ file Test larger randomly generated FASTQ file in parallel Test larger randomly generated FASTQ file in parallel (different syntax) Test larger randomly generated FASTQ file with read_block ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 9/17 seq_writer OK 4.27s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test FASTA Test FASTA amino acid Test FASTQ Test random file Test random file in parallel Iteration 2 Test FASTA Test FASTA amino acid Test FASTQ Test random file Test random file in parallel Iteration 3 Test FASTA Test FASTA amino acid Test FASTQ Test random file Test random file in parallel ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― Ok: 17 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/meson-logs/testlog.txt create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && DESTDIR=/build/reproducible-path/btllib-1.7.5\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install [0/1] Installing files Installing libbtllib.a to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/lib Installing recipes/indexlr to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/bin Installing recipes/randseq to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/bin Installing recipes/mi_bf_generate to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/bin Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/nthash.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/mi_bloom_filter-inl.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_reader_multiline_fastq_module.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/counting_bloom_filter-inl.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/indexlr.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_reader_fastq_module.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/counting_bloom_filter.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/nthash_kmer.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/util.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/process_pipeline.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/randseq.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_reader_sam_module.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/bloom_filter.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/nthash_seed.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_reader.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/mi_bloom_filter.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_writer.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/order_queue.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/hashing_internals.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/cstring.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/data_stream.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_reader_multiline_fasta_module.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/status.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/graph.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_reader_fasta_module.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/aahash.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Running custom install script '/build/reproducible-path/btllib-1.7.5+dfsg/scripts/install-cpptoml' Running custom install script '/build/reproducible-path/btllib-1.7.5+dfsg/scripts/install-sdsl-lite' dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libbtllib-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libbtllib-dev' in '../libbtllib-dev_1.7.5+dfsg-2_amd64.deb'. dpkg-deb: building package 'btllib-tools-dbgsym' in '../btllib-tools-dbgsym_1.7.5+dfsg-2_amd64.deb'. dpkg-deb: building package 'btllib-tools' in '../btllib-tools_1.7.5+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../btllib_1.7.5+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../btllib_1.7.5+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/756044 and its subdirectories I: Current time: Sun Sep 27 21:25:10 -12 2026 I: pbuilder-time-stamp: 1790587510 Tue Aug 26 03:02:11 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Tue Aug 26 03:02:11 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Tue Aug 26 03:15:00 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Tue Aug 26 03:15:01 UTC 2025 I: btllib_1.7.5+dfsg-2_amd64.changes: Format: 1.8 Date: Wed, 09 Apr 2025 14:18:37 +0200 Source: btllib Binary: btllib-tools btllib-tools-dbgsym libbtllib-dev Architecture: amd64 Version: 1.7.5+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: btllib-tools - Bioinformatics Technology Lab common code library tools libbtllib-dev - Bioinformatics Technology Lab common code library Changes: btllib (1.7.5+dfsg-2) unstable; urgency=medium . * d/control: drop unneeded build-dep on libomp-dev; gcc→libgcc-N-dev provides omp.h Checksums-Sha1: abc3b5498588cd481bf04b1ae360c60501433fdc 5144096 btllib-tools-dbgsym_1.7.5+dfsg-2_amd64.deb 387777f7c4a2cdc000f77cfca77c43855e72052e 281704 btllib-tools_1.7.5+dfsg-2_amd64.deb c55eba0e2c59994da7061a484cfada34b8d008fb 7237 btllib_1.7.5+dfsg-2_amd64.buildinfo 8884dcf75a0badbe95d191cfe0095c850b18be74 217940 libbtllib-dev_1.7.5+dfsg-2_amd64.deb Checksums-Sha256: 8b860f8a42865f3d25f3294df324bd6688a209cf4ae78829399a0919469d6297 5144096 btllib-tools-dbgsym_1.7.5+dfsg-2_amd64.deb 57bf378511f4f34ad8ead841ac22bc8fe6db15f236fe22279eae32b58e38865e 281704 btllib-tools_1.7.5+dfsg-2_amd64.deb 3b082edc3f66e2334ad50d02982157243653983089ffee373874c11d62563435 7237 btllib_1.7.5+dfsg-2_amd64.buildinfo 11a6c388d675716287884a3b5bfc6d172df1fa0a35ce08c7911720f71cca0fad 217940 libbtllib-dev_1.7.5+dfsg-2_amd64.deb Files: 905626aa9a4807496801c78dfb98c51f 5144096 debug optional btllib-tools-dbgsym_1.7.5+dfsg-2_amd64.deb d758880c9986e59e1591f24f81d6f7c4 281704 science optional btllib-tools_1.7.5+dfsg-2_amd64.deb 22ca3c111977214ec7b88679456a33a1 7237 science optional btllib_1.7.5+dfsg-2_amd64.buildinfo 077fa0d08c07ba1053a59b65a5e77509 217940 libdevel optional libbtllib-dev_1.7.5+dfsg-2_amd64.deb Tue Aug 26 03:15:01 UTC 2025 I: diffoscope 305 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_22-56418.service; invocation ID: 1a2e8090774d4b159fbed47723231b2a # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UZ2I7YBi/btllib_1.7.5+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UZ2I7YBi/btllib_1.7.5+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UZ2I7YBi/btllib_1.7.5+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UZ2I7YBi/b1/btllib_1.7.5+dfsg-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.UZ2I7YBi/b2/btllib_1.7.5+dfsg-2_amd64.changes ## close_archive (total time: 0.000s) 0.000s 30 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.deb.DebContainer 0.000s 18 calls diffoscope.comparators.tar.TarContainer 0.000s 12 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.ar.ArContainer ## command (total time: 133.352s) 63.932s 3522 calls readelf 59.588s 380 calls diff 7.476s 593 calls objdump 1.152s 6 calls objcopy 0.915s 30 calls xz 0.221s 77 calls strings 0.053s 11 calls nm 0.006s 5 calls cmp 0.006s 5 calls cmp (external) 0.002s 42 calls cmp (internal) ## compare_files (cumulative) (total time: 714.106s) 131.187s 1 call abc.DotChangesFile 131.171s 3 calls abc.DebFile 131.116s 6 calls abc.XzFile 130.758s 3 calls abc.DebDataTarFile 126.398s 7 calls abc.ElfFile 57.462s 30 calls diffoscope.comparators.elf.ElfCodeSection 3.975s 1 call abc.ArFile 1.359s 116 calls diffoscope.comparators.elf.ElfSection 0.579s 10 calls diffoscope.comparators.elf.ElfStringSection 0.063s 3 calls abc.TarFile 0.020s 3 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.009s 3 calls abc.Md5sumsFile 0.009s 1 call abc.TextFile ## container_extract (total time: 1.034s) 0.916s 30 calls diffoscope.comparators.xz.XzContainer 0.069s 84 calls diffoscope.comparators.deb.DebTarContainer 0.032s 36 calls diffoscope.comparators.deb.DebContainer 0.010s 24 calls diffoscope.comparators.tar.TarContainer 0.007s 32 calls diffoscope.comparators.ar.ArContainer ## diff (total time: 2.671s) 2.671s 2477 calls linediff ## has_same_content_as (total time: 0.011s) 0.007s 23 calls abc.ElfFile 0.002s 3 calls abc.DebDataTarFile 0.000s 6 calls abc.TextFile 0.000s 6 calls abc.Md5sumsFile 0.000s 116 calls diffoscope.comparators.elf.ElfSection 0.000s 6 calls abc.XzFile 0.000s 3 calls abc.TarFile 0.000s 3 calls abc.DebFile 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 30 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 1 call abc.ArFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 1 call abc.DotChangesFile 0.000s 10 calls diffoscope.comparators.elf.ElfStringSection 0.000s 3 calls diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 231.793s) 231.792s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 30 calls diffoscope.comparators.xz.XzContainer 0.000s 18 calls diffoscope.comparators.tar.TarContainer 0.000s 12 calls diffoscope.comparators.deb.DebTarContainer 0.000s 12 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.ar.ArContainer ## output (total time: 100.317s) 95.235s 1 call html 2.963s 1 call text 2.119s 1 call json ## recognizes (total time: 0.923s) 0.669s 1218 calls diffoscope.comparators.utils.archive.ArchiveMember 0.188s 4080 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.046s 12 calls diffoscope.comparators.binary.FilesystemFile 0.021s 324 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.390s) 0.390s 212 calls specialize Finished with result: success Main processes terminated with: code=exited, status=1/FAILURE Service runtime: 3min 52.059s CPU time consumed: 4min 15.282s Memory peak: 2.3G (swap: 0B) Tue Aug 26 03:18:56 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Tue Aug 26 03:18:56 UTC 2025 E: btllib failed to build reproducibly in forky on amd64. Tue Aug 26 03:20:16 UTC 2025 I: Removing signed btllib_1.7.5+dfsg-2_amd64.buildinfo.asc files: removed './b1/btllib_1.7.5+dfsg-2_amd64.buildinfo.asc' removed './b2/btllib_1.7.5+dfsg-2_amd64.buildinfo.asc'