Sat Oct 18 13:26:09 UTC 2025 I: starting to build cassiopee/forky/amd64 on jenkins on '2025-10-18 13:25' Sat Oct 18 13:26:09 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/86334/console.log Sat Oct 18 13:26:09 UTC 2025 I: Downloading source for forky/cassiopee=1.0.9-5 --2025-10-18 13:26:10-- http://deb.debian.org/debian/pool/main/c/cassiopee/cassiopee_1.0.9-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2256 (2.2K) [text/prs.lines.tag] Saving to: ‘cassiopee_1.0.9-5.dsc’ 0K .. 100% 123M=0s 2025-10-18 13:26:10 (123 MB/s) - ‘cassiopee_1.0.9-5.dsc’ saved [2256/2256] Sat Oct 18 13:26:11 UTC 2025 I: cassiopee_1.0.9-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cassiopee Binary: cassiopee, libcassie-doc, libcassie1v5, libcassie-dev Architecture: any all Version: 1.0.9-5 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Homepage: https://github.com/osallou/cassiopee-c Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/cassiopee Vcs-Git: https://salsa.debian.org/med-team/cassiopee.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, doxygen, libboost-serialization-dev, libboost-iostreams-dev, libgoogle-glog-dev, libcppunit-dev Package-List: cassiopee deb science optional arch=any libcassie-dev deb libdevel optional arch=any libcassie-doc deb doc optional arch=all libcassie1v5 deb libs optional arch=any Checksums-Sha1: a25a0e8173ad9c5f91427f8235414ee9063d343a 60576 cassiopee_1.0.9.orig.tar.gz da09e51c506362f3e92589d0eebe0be00e8a4f5e 5204 cassiopee_1.0.9-5.debian.tar.xz Checksums-Sha256: f02d72bbc18e858af68fb0a25d2e5d00b52d3ab5ef33d2e6731d8ff3d8bce35a 60576 cassiopee_1.0.9.orig.tar.gz f326f138489d0ad3b9c48f171077b6e2f93e005d3abfd56b2ddefeb3d1bdc38f 5204 cassiopee_1.0.9-5.debian.tar.xz Files: 4fc0d2239a849e8075e2941210455bec 60576 cassiopee_1.0.9.orig.tar.gz e90425b4f30aaaf5bbc68203042bd232 5204 cassiopee_1.0.9-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmjwwSQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFJrw//cYUIDZ+aSARe4hwIWYzekaTmQZMCtqGt livqwwHrJFMDWBAPYjPXoOC1vU3Wy9m51+n9Y1dCWvxcW9OtiM1p9IbqODVnMNXY LTDu1TfUFRs3zF63yPNIltHau8AmPbqbUFaZnUcDlfF16j9a+bCGnx5YhI8Xunjh V16twdq73bGi0OuZRrzceN1YATJXi3LFIfOce3E+qloCel7G5ZWkcaHS0aX8mbkr 081fd/6wXFR768kvapYKl1/kU+wi0ZOU8G9qs4a9g869jc4j7Nn968TGftbIk8jo 78iqKKZneohASz8Y1ye4yq+LMIIPgWZCUwVWtdnYyn7GzW8QeGtTC9UpD2oASEZy OLRwq/D3mnDKndlt6gno4P6tDtlJrFbTxgzcshgOi+MgrIDwkVLc68IgRZEU27jR N2tbkDwrlCHwf9+aVV/lUJrVUIWzTg7ZgsrfwrvPlM/V/QiYhpmspSn4uSIN9uW/ JvjIqCbS3MLYv7Rn7ZBJAN5BZuZ/zknXgWoSv6gvVyjJTQWe21K53g3dRxLhWcrk shk96aVKGTwgedxWNOyqgQKE8xWej/9HA+4pCjiviMdTa/awlcd1fORyJsdCorCG gksU7A6vS+e29k3EoHFwRJpmLsY3M3hWpnuGinV0Iv4cNIh5BO9mznpqyYgqPiPs abw+GA81n/I= =5auL -----END PGP SIGNATURE----- Sat Oct 18 13:26:11 UTC 2025 I: Checking whether the package is not for us Sat Oct 18 13:26:11 UTC 2025 I: Starting 1st build on remote node infom01-amd64.debian.net. Sat Oct 18 13:26:11 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Sat Oct 18 13:28:41 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 18 01:26:12 -12 2025 I: pbuilder-time-stamp: 1760793972 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cassiopee_1.0.9-5.dsc] I: copying [./cassiopee_1.0.9.orig.tar.gz] I: copying [./cassiopee_1.0.9-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./cassiopee_1.0.9-5.dsc: no acceptable signature found dpkg-source: info: extracting cassiopee in cassiopee-1.0.9 dpkg-source: info: unpacking cassiopee_1.0.9.orig.tar.gz dpkg-source: info: unpacking cassiopee_1.0.9-5.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2295661/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='31a93aa4c4be42368275afe1c35b9f25' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2295661' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NC4Dm5rq/pbuilderrc_zg25 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NC4Dm5rq/b1 --logfile b1/build.log cassiopee_1.0.9-5.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.48+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2295661/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, doxygen, libboost-serialization-dev, libboost-iostreams-dev, libgoogle-glog-dev, libcppunit-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19898 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on libboost-serialization-dev; however: Package libboost-serialization-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libgoogle-glog-dev; however: Package libgoogle-glog-dev is not installed. pbuilder-satisfydepends-dummy depends on libcppunit-dev; however: Package libcppunit-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcppunit-1.15-0{a} libcppunit-dev{a} libcurl4t64{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libgcc-14-dev{a} libgflags-dev{a} libgflags2.2{a} libgnutls30t64{a} libgoogle-glog-dev{a} libgoogle-glog0v6t64{a} libgssapi-krb5-2{a} libicu-dev{a} libicu76{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libllvm19{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libstdc++-14-dev{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libunwind-dev{a} libunwind8{a} libuv1t64{a} libxml2-16{a} libz3-4{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 91 newly installed, 0 to remove and 0 not upgraded. Need to get 132 MB of archives. After unpacking 720 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-1 [95.2 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 29 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.16.0-4 [408 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 50 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 56 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libllvm19 amd64 1:19.1.7-7 [25.9 MB] Get: 65 http://deb.debian.org/debian forky/main amd64 libclang-cpp19 amd64 1:19.1.7-7 [13.2 MB] Get: 66 http://deb.debian.org/debian forky/main amd64 libclang1-19 amd64 1:19.1.7-7 [7603 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 doxygen amd64 1.9.8+ds-2.1 [5017 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libgcc-14-dev amd64 14.3.0-8 [2670 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libstdc++-14-dev amd64 14.3.0-8 [2673 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libboost1.83-dev amd64 1.83.0-5 [10.6 MB] Get: 75 http://deb.debian.org/debian forky/main amd64 libboost-regex1.83.0 amd64 1.83.0-5 [336 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 77 http://deb.debian.org/debian forky/main amd64 libboost-regex1.83-dev amd64 1.83.0-5 [352 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-5 [265 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 80 http://deb.debian.org/debian forky/main amd64 libboost-serialization1.83.0 amd64 1.83.0-5 [343 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libboost-serialization1.83-dev amd64 1.83.0-5 [383 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 83 http://deb.debian.org/debian forky/main amd64 libcppunit-1.15-0 amd64 1.15.1-4+b2 [151 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 libcppunit-dev amd64 1.15.1-4+b2 [208 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libgflags2.2 amd64 2.2.2-3 [93.2 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libgflags-dev amd64 2.2.2-3 [109 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libunwind8 amd64 1.8.1-0.1 [56.3 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libgoogle-glog0v6t64 amd64 0.6.0-2.1 [66.1 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-2 [349 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libunwind-dev amd64 1.8.1-0.1 [500 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libgoogle-glog-dev amd64 0.6.0-2.1 [102 kB] Fetched 132 MB in 4s (33.4 MB/s) Preconfiguring packages ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/cassiopee-1.0.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cassiopee_1.0.9-5_source.changes dpkg-buildpackage: info: source package cassiopee dpkg-buildpackage: info: source version 1.0.9-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/cassiopee-1.0.9' dh_auto_configure -- -DCMAKE_POLICY_VERSION_MINIMUM=3.5 cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Warning (dev) at CMakeLists.txt:3 (enable_language): project() should be called prior to this enable_language() call. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at CMakeLists.txt:29 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams serialization -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen missing components: dot -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9' dh_auto_build cd obj-x86_64-linux-gnu && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/cassiopee-1.0.9 -B/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make -f CMakeFiles/doc.dir/build.make CMakeFiles/doc.dir/depend make -f src/CMakeFiles/cassie.dir/build.make src/CMakeFiles/cassie.dir/depend make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cassiopee-1.0.9 /build/reproducible-path/cassiopee-1.0.9 /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/CMakeFiles/doc.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cassiopee-1.0.9 /build/reproducible-path/cassiopee-1.0.9/src /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src/CMakeFiles/cassie.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make -f src/CMakeFiles/cassie.dir/build.make src/CMakeFiles/cassie.dir/build make -f CMakeFiles/doc.dir/build.make CMakeFiles/doc.dir/build make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' [ 22%] Generating API documentation with Doxygen [ 22%] Building CXX object src/CMakeFiles/cassie.dir/cassiopee.cxx.o cd /build/reproducible-path/cassiopee-1.0.9 && /usr/bin/doxygen /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -Dcassie_EXPORTS -I/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT src/CMakeFiles/cassie.dir/cassiopee.cxx.o -MF CMakeFiles/cassie.dir/cassiopee.cxx.o.d -o CMakeFiles/cassie.dir/cassiopee.cxx.o -c /build/reproducible-path/cassiopee-1.0.9/src/cassiopee.cxx warning: Tag 'TCL_SUBST' at line 203 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SYMBOL_CACHE_SIZE' at line 327 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 547 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 839 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 935 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 941 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'USE_INLINE_TREES' at line 1132 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1159 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1297 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1395 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. 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To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1587 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 1617 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 1622 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 1762 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:324: warning: Compound per_position is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:223: warning: Member seq_length (variable) of class CassieIndexer is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:353: warning: Member morphisms (variable) of class CassieSearch is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:424: warning: Member pattern_length (variable) of class CassieSearch is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:403: warning: argument 'array' of command @param is not found in the argument list of CassieSearch::search(string suffixes[]) /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:403: warning: The following parameter of CassieSearch::search(string suffixes[]) is not documented: parameter 'suffixes' /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:49: warning: Member pos (variable) of class Match is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:326: warning: Member operator()(const Match *struct1, const Match *struct2) (function) of struct per_position is not documented. Doxygen version used: 1.9.8 Notice: Output directory 'doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/cassiopee-1.0.9/src Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/cassiopee-1.0.9/src/cassie.cxx... Parsing file /build/reproducible-path/cassiopee-1.0.9/src/cassie.cxx... Preprocessing /build/reproducible-path/cassiopee-1.0.9/src/cassiopee.cxx... Parsing file /build/reproducible-path/cassiopee-1.0.9/src/cassiopee.cxx... Preprocessing /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h... Parsing file /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h... Preprocessing /build/reproducible-path/cassiopee-1.0.9/src/knife.cxx... Parsing file /build/reproducible-path/cassiopee-1.0.9/src/knife.cxx... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file src/Cassiopee.h... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound Ambiguous... Generating docs for compound CassieIndexer... Generating docs for compound CassieSearch... Generating docs for compound CassiopeeUtils... Generating docs for compound Match... Generating docs for compound per_position... Generating docs for compound TreeNode... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 145/65536 hits=236 misses=150 symbol lookup cache used 125/65536 hits=429 misses=125 finished... make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' [ 22%] Built target doc [ 33%] Linking CXX shared library ../lib/libcassie.so cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cassie.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,--dependency-file=CMakeFiles/cassie.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcassie.so.1 -o ../lib/libcassie.so.1.0.0 CMakeFiles/cassie.dir/cassiopee.cxx.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib: -lglog /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.83.0 cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/libcassie.so.1.0.0 ../lib/libcassie.so.1 ../lib/libcassie.so make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' [ 33%] Built target cassie make -f src/CMakeFiles/cassiopee.dir/build.make src/CMakeFiles/cassiopee.dir/depend make -f src/CMakeFiles/cassiopeeknife.dir/build.make src/CMakeFiles/cassiopeeknife.dir/depend make -f test/CMakeFiles/test_cassiopee.dir/build.make test/CMakeFiles/test_cassiopee.dir/depend make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cassiopee-1.0.9 /build/reproducible-path/cassiopee-1.0.9/src /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src/CMakeFiles/cassiopee.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cassiopee-1.0.9 /build/reproducible-path/cassiopee-1.0.9/src /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src/CMakeFiles/cassiopeeknife.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cassiopee-1.0.9 /build/reproducible-path/cassiopee-1.0.9/test /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/test /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/test/CMakeFiles/test_cassiopee.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make -f src/CMakeFiles/cassiopee.dir/build.make src/CMakeFiles/cassiopee.dir/build make -f src/CMakeFiles/cassiopeeknife.dir/build.make src/CMakeFiles/cassiopeeknife.dir/build make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make -f test/CMakeFiles/test_cassiopee.dir/build.make test/CMakeFiles/test_cassiopee.dir/build make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' [ 55%] Building CXX object src/CMakeFiles/cassiopee.dir/cassie.cxx.o [ 55%] Building CXX object src/CMakeFiles/cassiopeeknife.dir/knife.cxx.o [ 66%] Building CXX object test/CMakeFiles/test_cassiopee.dir/test.cxx.o cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT src/CMakeFiles/cassiopee.dir/cassie.cxx.o -MF CMakeFiles/cassiopee.dir/cassie.cxx.o.d -o CMakeFiles/cassiopee.dir/cassie.cxx.o -c /build/reproducible-path/cassiopee-1.0.9/src/cassie.cxx cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT src/CMakeFiles/cassiopeeknife.dir/knife.cxx.o -MF CMakeFiles/cassiopeeknife.dir/knife.cxx.o.d -o CMakeFiles/cassiopeeknife.dir/knife.cxx.o -c /build/reproducible-path/cassiopee-1.0.9/src/knife.cxx cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin -I/build/reproducible-path/cassiopee-1.0.9/test/src -I/build/reproducible-path/cassiopee-1.0.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT test/CMakeFiles/test_cassiopee.dir/test.cxx.o -MF CMakeFiles/test_cassiopee.dir/test.cxx.o.d -o CMakeFiles/test_cassiopee.dir/test.cxx.o -c /build/reproducible-path/cassiopee-1.0.9/test/test.cxx [ 77%] Linking CXX executable ../bin/cassiopeeknife cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cassiopeeknife.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cassiopeeknife.dir/link.d CMakeFiles/cassiopeeknife.dir/knife.cxx.o -o ../bin/cassiopeeknife -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/lib: ../lib/libcassie.so.1.0.0 -lglog /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' [ 77%] Built target cassiopeeknife [ 88%] Linking CXX executable ../bin/cassiopee cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cassiopee.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cassiopee.dir/link.d CMakeFiles/cassiopee.dir/cassie.cxx.o -o ../bin/cassiopee -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/lib: ../lib/libcassie.so.1.0.0 -lglog /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' [ 88%] Built target cassiopee [100%] Linking CXX executable ../bin/test_cassiopee cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_cassiopee.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_cassiopee.dir/link.d CMakeFiles/test_cassiopee.dir/test.cxx.o -o ../bin/test_cassiopee -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/lib ../lib/libcassie.so.1.0.0 -lglog -lcppunit /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' [100%] Built target test_cassiopee make[2]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j12 test ARGS\+=--verbose ARGS\+=-j12 make[1]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j12 UpdateCTestConfiguration from :/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: TestCassie 1: Test command: /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/test_cassiopee 1: Working Directory: /build/reproducible-path/cassiopee-1.0.9 1: Test timeout computed to be: 10000000 1: WARNING: Logging before InitGoogleLogging() is written to STDERR 1: I20251018 13:28:33.991405 2302483 cassiopee.cxx:632] Existing index for max depth = 0 1: I20251018 13:28:33.991461 2302483 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20251018 13:28:33.993467 2302483 cassiopee.cxx:632] Existing index for max depth = 0 1: I20251018 13:28:33.993484 2302483 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20251018 13:28:33.993626 2302483 cassiopee.cxx:632] Existing index for max depth = 0 1: I20251018 13:28:33.993635 2302483 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20251018 13:28:33.993942 2302483 cassiopee.cxx:632] Existing index for max depth = 0 1: I20251018 13:28:33.993952 2302483 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20251018 13:28:33.994102 2302483 cassiopee.cxx:632] Existing index for max depth = 0 1: I20251018 13:28:33.994110 2302483 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20251018 13:28:33.995101 2302483 cassiopee.cxx:632] Existing index for max depth = 0 1: I20251018 13:28:33.995113 2302483 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20251018 13:28:33.996132 2302483 cassiopee.cxx:632] Existing index for max depth = 0 1: I20251018 13:28:33.996145 2302483 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20251018 13:28:33.996443 2302483 cassiopee.cxx:632] Existing index for max depth = 0 1: I20251018 13:28:33.996451 2302483 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20251018 13:28:33.996755 2302483 cassiopee.cxx:632] Existing index for max depth = 0 1: I20251018 13:28:33.996766 2302483 cassiopee.cxx:651] Indexing test/protein.txt 1: I20251018 13:28:33.998265 2302483 cassiopee.cxx:632] Existing index for max depth = 0 1: I20251018 13:28:33.998279 2302483 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20251018 13:28:33.999889 2302483 cassiopee.cxx:693] Maximum index depth: 75 1: I20251018 13:28:34.002115 2302483 cassiopee.cxx:632] Existing index for max depth = 75 1: I20251018 13:28:34.002142 2302483 cassiopee.cxx:638] Index file exists, loading it 1: I20251018 13:28:34.005059 2302483 cassiopee.cxx:743] Loaded 2504 nodes 1: I20251018 13:28:34.005530 2302483 cassiopee.cxx:632] Existing index for max depth = 75 1: I20251018 13:28:34.005548 2302483 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20251018 13:28:34.006765 2302483 cassiopee.cxx:693] Maximum index depth: 75 1: I20251018 13:28:34.008993 2302483 cassiopee.cxx:632] Existing index for max depth = 75 1: I20251018 13:28:34.009018 2302483 cassiopee.cxx:638] Index file exists, loading it 1: I20251018 13:28:34.011447 2302483 cassiopee.cxx:743] Loaded 2504 nodes 1: I20251018 13:28:34.011826 2302483 cassiopee.cxx:632] Existing index for max depth = 75 1: I20251018 13:28:34.011843 2302483 cassiopee.cxx:651] Indexing test/sequence.txt 1: OK (13) 1/1 Test #1: TestCassie ....................... Passed 0.03 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.03 sec make[1]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/cassiopee-1.0.9/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/cassiopee-1.0.9 -B/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/bin/cassiopee -- Set non-toolchain portion of runtime path of "/build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/bin/cassiopee" to "" -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/bin/cassiopeeknife -- Set non-toolchain portion of runtime path of "/build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/bin/cassiopeeknife" to "" -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/include/CassiopeeConfig.h -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/lib/libcassie.so.1.0.0 -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/lib/libcassie.so.1 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/lib/libcassie.so.1.0.0" to "" -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/lib/libcassie.so -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/include/Cassiopee.h -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/include/tree/tree.hh -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/include/tree/tree_util.hh make[1]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cassiopee-1.0.9' rm -f doc/html/jquery.js dh_install make[1]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libcassie-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'cassiopee' in '../cassiopee_1.0.9-5_amd64.deb'. dpkg-deb: building package 'cassiopee-dbgsym' in '../cassiopee-dbgsym_1.0.9-5_amd64.deb'. dpkg-deb: building package 'libcassie-doc' in '../libcassie-doc_1.0.9-5_all.deb'. dpkg-deb: building package 'libcassie1v5-dbgsym' in '../libcassie1v5-dbgsym_1.0.9-5_amd64.deb'. dpkg-deb: building package 'libcassie-dev' in '../libcassie-dev_1.0.9-5_amd64.deb'. dpkg-deb: building package 'libcassie1v5' in '../libcassie1v5_1.0.9-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../cassiopee_1.0.9-5_amd64.buildinfo dpkg-genchanges --build=binary -O../cassiopee_1.0.9-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2295661 and its subdirectories I: Current time: Sat Oct 18 01:28:41 -12 2025 I: pbuilder-time-stamp: 1760794121 Sat Oct 18 13:28:42 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Sat Oct 18 13:28:42 UTC 2025 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Sat Oct 18 13:31:04 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. Sat Oct 18 13:31:04 UTC 2025 I: cassiopee_1.0.9-5_amd64.changes: Format: 1.8 Date: Thu, 16 Oct 2025 11:50:38 +0200 Source: cassiopee Binary: cassiopee cassiopee-dbgsym libcassie-dev libcassie-doc libcassie1v5 libcassie1v5-dbgsym Architecture: amd64 all Version: 1.0.9-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1v5 - library implementating search algorithms Closes: 1112764 Changes: cassiopee (1.0.9-5) unstable; urgency=medium . * Team upload. * d/watch: version=5 * Fix build with CMake 4.0 Closes: #1112764 * Standards-Version: 4.7.2 (routine-update) * debputy lint --auto-fix (routine-update) Checksums-Sha1: 8d09f34053ba967805a11859c5f5c132175ee698 135192 cassiopee-dbgsym_1.0.9-5_amd64.deb 3c3d5e639a3932b184faedf5f9e2edb4c9cf7488 8076 cassiopee_1.0.9-5_amd64.buildinfo ddda561eeec741174e1d1d498b4cb56d63ae4d0d 17192 cassiopee_1.0.9-5_amd64.deb 2819a5784cf18726f46f021bc5c193fd490363ef 18816 libcassie-dev_1.0.9-5_amd64.deb b0ba914a276fc4fd3779a51b66f01d1646e23161 51936 libcassie-doc_1.0.9-5_all.deb 557952e0a8d432339eb4cc08d177d38e5894ab69 351256 libcassie1v5-dbgsym_1.0.9-5_amd64.deb a391266613e18ec1239690d84ad2ed58e9651846 41236 libcassie1v5_1.0.9-5_amd64.deb Checksums-Sha256: f5afa414c5e6e0699864993e686abfd6519e39b1a48ed9545612009116cdc226 135192 cassiopee-dbgsym_1.0.9-5_amd64.deb cd9a246a98e5f3104c1968aa09bdad08756f4207454032cd6c2d1d2d3c280ad4 8076 cassiopee_1.0.9-5_amd64.buildinfo d257621fd91b12c6cd586ef9f942001c67130541cc547620270291b2e1477615 17192 cassiopee_1.0.9-5_amd64.deb 748ff07968bc01616002befecd7ffb75ecb15a29239f7e190d80c1985bbd8ca4 18816 libcassie-dev_1.0.9-5_amd64.deb 7716a6292c835c0ed65039219a8797a6c16eb270f133389d6261b017a419b608 51936 libcassie-doc_1.0.9-5_all.deb f22bf743e3187f0db6ecb3d6dd61a51b908dc9d6976aafe4f3ef7766f5a71aa6 351256 libcassie1v5-dbgsym_1.0.9-5_amd64.deb 20fa862d81b5c6f263f6f03202ce33135c0a34de772c763412499d30824b81c5 41236 libcassie1v5_1.0.9-5_amd64.deb Files: 2dbe802cf284528624d4c06df0c6059d 135192 debug optional cassiopee-dbgsym_1.0.9-5_amd64.deb c062d22aa6328f9d91870ea79df700bc 8076 science optional cassiopee_1.0.9-5_amd64.buildinfo 82582902deff9eb1bd7998de901fcf1f 17192 science optional cassiopee_1.0.9-5_amd64.deb 95f1f168ff122820d57fc9b8a83a6b6a 18816 libdevel optional libcassie-dev_1.0.9-5_amd64.deb b435841132849a379d02008cbc47d79e 51936 doc optional libcassie-doc_1.0.9-5_all.deb 6e1567662c89b1a882428082a82674b6 351256 debug optional libcassie1v5-dbgsym_1.0.9-5_amd64.deb f432fd5d79fbf011efc27b43bb9c4e9d 41236 libs optional libcassie1v5_1.0.9-5_amd64.deb Sat Oct 18 13:31:05 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_33-86334.service; invocation ID: 258a3cec50314b928b3ba2de9cc4b5f6 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NC4Dm5rq/cassiopee_1.0.9-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NC4Dm5rq/cassiopee_1.0.9-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NC4Dm5rq/cassiopee_1.0.9-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NC4Dm5rq/b1/cassiopee_1.0.9-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.NC4Dm5rq/b2/cassiopee_1.0.9-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 206ms CPU time consumed: 170ms Memory peak: 17.9M (swap: 0B) Sat Oct 18 13:31:05 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sat Oct 18 13:31:05 UTC 2025 I: cassiopee from forky built successfully and reproducibly on amd64. Sat Oct 18 13:31:06 UTC 2025 I: Removing signed cassiopee_1.0.9-5_amd64.buildinfo.asc files: removed './b1/cassiopee_1.0.9-5_amd64.buildinfo.asc' removed './b2/cassiopee_1.0.9-5_amd64.buildinfo.asc'