Mon Sep 1 23:14:31 UTC 2025 I: starting to build dialign/forky/amd64 on jenkins on '2025-09-01 23:14' Mon Sep 1 23:14:31 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_34/78692/console.log Mon Sep 1 23:14:31 UTC 2025 I: Downloading source for forky/dialign=2.2.1-13 --2025-09-01 23:14:32-- http://deb.debian.org/debian/pool/main/d/dialign/dialign_2.2.1-13.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2141 (2.1K) [text/prs.lines.tag] Saving to: ‘dialign_2.2.1-13.dsc’ 0K .. 100% 236M=0s 2025-09-01 23:14:32 (236 MB/s) - ‘dialign_2.2.1-13.dsc’ saved [2141/2141] Mon Sep 1 23:14:32 UTC 2025 I: dialign_2.2.1-13.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dialign Binary: dialign Architecture: any Version: 2.2.1-13 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://dialign.gobics.de/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/dialign Vcs-Git: https://salsa.debian.org/med-team/dialign.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: dialign deb science optional arch=any Checksums-Sha1: 2b5b13f57a2067d122afd54916497cfb5ad7b42f 209015 dialign_2.2.1.orig.tar.gz 3afa682fb19d323d91c1406690709b8ea6a35852 14020 dialign_2.2.1-13.debian.tar.xz Checksums-Sha256: 046361bb4ca6e4ab2ac5e634cfcd673f964a887006c09c1b8bd3310fac86f519 209015 dialign_2.2.1.orig.tar.gz 3047f114dbf8524056c7c87365dc44c1d2603dc819678c974e512dca26bba725 14020 dialign_2.2.1-13.debian.tar.xz Files: 3ea891efbaac8572f9ff1dc7f1d3c5f8 209015 dialign_2.2.1.orig.tar.gz 0dd500028fb30c59a7f3a79c838165bf 14020 dialign_2.2.1-13.debian.tar.xz Dgit: fe1168cbe75fd211db305aaa7e7b61fb02a5947a debian archive/debian/2.2.1-13 https://git.dgit.debian.org/dialign -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmaHCcMUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdp3vw/+MNpM+p2zN55378H4Pqi4SREvk0f1 4CI7b3axVIyPOG9XRvCWdAotGEOkZr8FL7xo111jjNvdiLo6mJyxibgWg8aEyxSL 6LkmnI7tSKNMzjEClgA3u9JHc4mK9cGzjogJNPjFPn4LPXZwIASAFkchNy8WUWZu jIuPFv5ID6cPVsTH3xuvDrKX1PTrZA/AvoizvuF4l019UdvSbI9UuLEAwAefr9DG E8JxRbxbEJWZ6MWZGmganQEmdXpaTy6v3o4ucPQPB2L15teNtRHcIMs+ge+5aCL7 Ve5iXKOsSX7KB1RgV1e7BlrX2CjqdNFoXRvVDOpR8SR1cUfFAYoFN28UystuMJdZ K4EWhyLk9KYM/TsPfjjNzlybGnyUP6b4hyWAwjOAUzroZCFseuw+0enSPbT6eMU1 elfKOxxfPJ+IXB+btDx3TAlPiwXd6eqNmT0DrnkW6OOjKOasatx+RtUzGTy2Or6m 9/qqRluc1snrtdSvnJXPjXZStp7mNP4YXSf87IO0DNZ0neiCJ6um9vCXeYMABQh6 3EbQGhIrd8JE5CAUB+uuXenuDP2f5Il7zou8Ld8J3DC6E32sPxZQO92XVMZsn24v miAuqUA4Dw6mtESsMKnayw3p6ChwjrTyc6aeK4ciLB0TWdukg5CQvBP0Tp/j2Pih g0spZv8egyKsEA4= =c5j6 -----END PGP SIGNATURE----- Mon Sep 1 23:14:32 UTC 2025 I: Checking whether the package is not for us Mon Sep 1 23:14:32 UTC 2025 I: Starting 1st build on remote node infom02-amd64.debian.net. Mon Sep 1 23:14:32 UTC 2025 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Mon Sep 1 23:15:14 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 4 17:37:33 -12 2026 I: pbuilder-time-stamp: 1791178653 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dialign_2.2.1-13.dsc] I: copying [./dialign_2.2.1.orig.tar.gz] I: copying [./dialign_2.2.1-13.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./dialign_2.2.1-13.dsc: no acceptable signature found dpkg-source: info: extracting dialign in dialign-2.2.1 dpkg-source: info: unpacking dialign_2.2.1.orig.tar.gz dpkg-source: info: unpacking dialign_2.2.1-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 20_no_DIALIGN2_DIR.patch dpkg-source: info: applying 30_local_doc.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix_excess_argument.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying fix-declarations.patch dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/442746/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f76a38b40c7d425fbb305d1b6afe00af' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='442746' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sR1dfoky/pbuilderrc_S1Q6 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sR1dfoky/b1 --logfile b1/build.log dialign_2.2.1-13.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/442746/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.14.2-1 [19.8 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.14.2-1 [8768 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Fetched 11.2 MB in 0s (49.9 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-1_amd64.deb ... Unpacking bsdextrautils (2.41.1-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.2-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.2-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.2-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dialign-2.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dialign_2.2.1-13_source.changes dpkg-buildpackage: info: source package dialign dpkg-buildpackage: info: source version 2.2.1-13 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/dialign-2.2.1' find src/ -name '*.o' -delete dh_clean src/dialign2-2 make[1]: Leaving directory '/build/reproducible-path/dialign-2.2.1' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/dialign-2.2.1' ## CFLAGS = -c -I-DCONS -O2 dh_auto_build --sourcedirectory=src cd src && make -j16 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/dialign-2.2.1/src' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O -I-DCONS dialign.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O -I-DCONS functions.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O -I-DCONS para.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O -I-DCONS output.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O -I-DCONS wgt.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O -I-DCONS anchor.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O -I-DCONS regex.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O -I-DCONS input.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O -I-DCONS frag_chain.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alig_graph_closure.o alig_graph_closure.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-2.2.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pratique.o pratique.c gcc dialign.o functions.o para.o output.o wgt.o anchor.o regex.o input.o frag_chain.o alig_graph_closure.o pratique.o -lm -o dialign2-2 -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/dialign-2.2.1/src' make[1]: Leaving directory '/build/reproducible-path/dialign-2.2.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/dialign/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dialign' in '../dialign_2.2.1-13_amd64.deb'. dpkg-deb: building package 'dialign-dbgsym' in '../dialign-dbgsym_2.2.1-13_amd64.deb'. dpkg-genbuildinfo --build=binary -O../dialign_2.2.1-13_amd64.buildinfo dpkg-genchanges --build=binary -O../dialign_2.2.1-13_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/442746 and its subdirectories I: Current time: Sun Oct 4 17:38:14 -12 2026 I: pbuilder-time-stamp: 1791178694 Mon Sep 1 23:15:15 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Mon Sep 1 23:15:15 UTC 2025 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Mon Sep 1 23:15:47 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. Mon Sep 1 23:15:48 UTC 2025 I: dialign_2.2.1-13_amd64.changes: Format: 1.8 Date: Thu, 04 Jul 2024 22:25:10 +0200 Source: dialign Binary: dialign dialign-dbgsym Architecture: amd64 Version: 2.2.1-13 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: dialign - Segment-based multiple sequence alignment Closes: 1074909 Changes: dialign (2.2.1-13) unstable; urgency=medium . * d/control: declare compliance to standards version 4.7.0. * d/control: add myself to uploaders. * gcc-14.patch: new: fix implicit types flagged by gcc-14. (Closes: #1074909) Checksums-Sha1: 99d109fe947f393e4d4b73ff41d408c2c512fda8 73064 dialign-dbgsym_2.2.1-13_amd64.deb 3eeb1b416a15883c8580c12d845c96aa643a1909 4890 dialign_2.2.1-13_amd64.buildinfo 95886d3f7eb42cd58b7dc5ddcf494c5769db82a4 137952 dialign_2.2.1-13_amd64.deb Checksums-Sha256: 420196340d05d84dce12c508a6566429b10e536d098f89fa44e28369b453186d 73064 dialign-dbgsym_2.2.1-13_amd64.deb 16a166d5463fa92003e5d22a057397435733967e53c329c07574c5866c0c3ece 4890 dialign_2.2.1-13_amd64.buildinfo 1fd7bbf55b9845828302791b6e565e3d0b0036eeff5b4f80da753d0c4cd651f6 137952 dialign_2.2.1-13_amd64.deb Files: bba27a7c39093f366a2e66613cb64e16 73064 debug optional dialign-dbgsym_2.2.1-13_amd64.deb 43689943d279254ee31c346f68e16f19 4890 science optional dialign_2.2.1-13_amd64.buildinfo 095fe980c6129bdaf5f6e500fe800301 137952 science optional dialign_2.2.1-13_amd64.deb Mon Sep 1 23:15:48 UTC 2025 I: diffoscope 305 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_34-78692.service; invocation ID: 8fd3b39968da4e95b888b545be768a40 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.sR1dfoky/dialign_2.2.1-13.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.sR1dfoky/dialign_2.2.1-13.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.sR1dfoky/dialign_2.2.1-13.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.sR1dfoky/b1/dialign_2.2.1-13_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.sR1dfoky/b2/dialign_2.2.1-13_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 219ms CPU time consumed: 172ms Memory peak: 17.7M (swap: 0B) Mon Sep 1 23:15:49 UTC 2025 I: diffoscope 305 found no differences in the changes files, and a .buildinfo file also exists. Mon Sep 1 23:15:49 UTC 2025 I: dialign from forky built successfully and reproducibly on amd64. Mon Sep 1 23:15:49 UTC 2025 I: Removing signed dialign_2.2.1-13_amd64.buildinfo.asc files: removed './b1/dialign_2.2.1-13_amd64.buildinfo.asc' removed './b2/dialign_2.2.1-13_amd64.buildinfo.asc'