Sat Aug 30 22:02:34 UTC 2025 I: starting to build gemmi/forky/amd64 on jenkins on '2025-08-30 22:02' Sat Aug 30 22:02:34 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_28/71259/console.log Sat Aug 30 22:02:34 UTC 2025 I: Downloading source for forky/gemmi=0.7.1+ds-1 --2025-08-30 22:02:34-- http://deb.debian.org/debian/pool/main/g/gemmi/gemmi_0.7.1%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2397 (2.3K) [text/prs.lines.tag] Saving to: ‘gemmi_0.7.1+ds-1.dsc’ 0K .. 100% 222M=0s 2025-08-30 22:02:34 (222 MB/s) - ‘gemmi_0.7.1+ds-1.dsc’ saved [2397/2397] Sat Aug 30 22:02:34 UTC 2025 I: gemmi_0.7.1+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gemmi Binary: gemmi, gemmi-dev, python3-gemmi Architecture: any Version: 0.7.1+ds-1 Maintainer: Debichem Team Uploaders: Andrius Merkys , Roland Mas , Homepage: https://project-gemmi.github.io Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/gemmi Vcs-Git: https://salsa.debian.org/debichem-team/gemmi.git Testsuite: autopkgtest Testsuite-Triggers: python3-biopython, python3-numpy, python3-pytest Build-Depends: cmake, debhelper-compat (= 13), dh-sequence-python3, doctest-dev, help2man, libstb-dev, pybuild-plugin-pyproject, python3-dev, python3-nanobind , python3-numpy , python3-pybind11 (>= 2.6.0), python3-pytest , tao-pegtl-dev, zlib1g-dev Package-List: gemmi deb science optional arch=any gemmi-dev deb libdevel optional arch=any python3-gemmi deb python optional arch=any Checksums-Sha1: 338914a2f96c701d9015561188c9ec4461e4393d 1372068 gemmi_0.7.1+ds.orig.tar.xz 24366bf22b153cf89ee62ea97bebdb9d80779fa8 7516 gemmi_0.7.1+ds-1.debian.tar.xz Checksums-Sha256: dfa6d8c53370a765f63455745867f13c9e0755f15060ac20a55eaa517f68459d 1372068 gemmi_0.7.1+ds.orig.tar.xz c92835ac3b69bb67417e6b251300fe0f1bb4a7f5abc7c78168d3fb5722717452 7516 gemmi_0.7.1+ds-1.debian.tar.xz Files: ec4888e9d6e607b22bf5f78b55b1e7c5 1372068 gemmi_0.7.1+ds.orig.tar.xz f4ff5d05c5299b66b8ba456e3a8e6e3e 7516 gemmi_0.7.1+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmivzeMSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHf5YP/RoMFf8cmsPNxlN+OJt58Yu1KQPBOTp1 EHn7Tse5TrkDPTsNcRDq5pRyzBu5z/kml0kVCWT7A6yWW52HVuYNpbRcDSRbdEmS mtREGgv/Z6TgGx5wrW/oiEuN8Uq63ktk9eJxqM4iWh2ZFmln1p6tM+rt/D5U8LAI Imy72FA1c8Je/1ZhTA8hMlRqzV8hBJpxBk6Kxj+n3Wv594Abs6hD6yZ5sYuqkX9X Qjum/Erx2pVuFLR9JuNZjDElySBtKs4Pol72JdbPDCdoYGTsnkK8ngpWlwo6L4sa 9sCo/mdxRNY2n9XYtXCpql5g/0eUtBvRirOjUDSo0N7hpKmBZ57JymK2aF2huJO1 vFjidEvUyz4gZ/txLBCJEKtQ4rfzyhaDB9PIdERL8tUC3Fs9GGY+b6HP2T2k2vjM /EKLy8BYUMBgvfghDGd3Y7zNA9UGqSFw65+CergLcnjkfOWvlIFVutxrcLkMWgCN W2WkCYnWxAQYzZUMJU2rgRdVe3Ne8NNCcIK74RbUntTIXaNwc98J6cDla6KN/XiZ G+tFPy2wMyu5eEF/FrKyiVn5NEKOSuKvBQDncfGFSMLS5P0ZlcUziIE0QSn6mYqd YtX0RoXGoBOWPYf1JZbdagvOcsPPRCCEq/ZdvLiut6yN7tCenfvFuPjCa19vPdEe XPHqe4fxKbmb =TC3O -----END PGP SIGNATURE----- Sat Aug 30 22:02:35 UTC 2025 I: Checking whether the package is not for us Sat Aug 30 22:02:35 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sat Aug 30 22:02:35 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sat Aug 30 22:08:10 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 2 16:25:35 -12 2026 I: pbuilder-time-stamp: 1791001535 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [gemmi_0.7.1+ds-1.dsc] I: copying [./gemmi_0.7.1+ds.orig.tar.xz] I: copying [./gemmi_0.7.1+ds-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./gemmi_0.7.1+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting gemmi in gemmi-0.7.1+ds dpkg-source: info: unpacking gemmi_0.7.1+ds.orig.tar.xz dpkg-source: info: unpacking gemmi_0.7.1+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-system-tao-pegtl.patch dpkg-source: info: applying use-system-doctest.patch dpkg-source: info: applying tao-pegtl-3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1150161/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='57725bd832974b61b6585fe5433f7f62' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1150161' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Cw9liPZA/pbuilderrc_nYm9 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Cw9liPZA/b1 --logfile b1/build.log gemmi_0.7.1+ds-1.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1150161/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), dh-sequence-python3, doctest-dev, help2man, libstb-dev, pybuild-plugin-pyproject, python3-dev, python3-nanobind, python3-numpy, python3-pybind11 (>= 2.6.0), python3-pytest, tao-pegtl-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on doctest-dev; however: Package doctest-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libstb-dev; however: Package libstb-dev is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-nanobind; however: Package python3-nanobind is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11 (>= 2.6.0); however: Package python3-pybind11 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} doctest-dev{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libeigen3-dev{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libstb-dev{a} libstb0t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} media-types{a} nanobind-dev{a} netbase{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybind11-dev{a} pybuild-plugin-pyproject{a} python3{a} python3-build{a} python3-dev{a} python3-iniconfig{a} python3-installer{a} python3-minimal{a} python3-nanobind{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pluggy{a} python3-pybind11{a} python3-pyproject-hooks{a} python3-pytest{a} python3-wheel{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} robin-map-dev{a} sensible-utils{a} tao-pegtl-dev{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix python3-pygments wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 59.7 MB of archives. After unpacking 239 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-1 [862 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-6 [2447 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 46 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.15.0-1 [392 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 66 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-4 [539 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.14.2-1 [19.8 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.14.2-1 [8768 B] Get: 72 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 doctest-dev all 2.4.12-1 [220 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 help2man amd64 1.49.3 [198 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libeigen3-dev all 3.4.0-5 [1034 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libpython3.13 amd64 3.13.7-1 [2162 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 libpython3.13-dev amd64 3.13.7-1 [5279 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libpython3-dev amd64 3.13.5-1 [10.4 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libstb0t64 amd64 0.0~git20241109.5c20573+ds-1 [220 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libstb-dev amd64 0.0~git20241109.5c20573+ds-1 [655 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 robin-map-dev all 1.3.0-1 [29.8 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 nanobind-dev all 2.5.0-1 [165 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 pybind11-dev all 2.13.6-2 [205 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 python3-build all 1.2.2-4 [36.2 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 python3.13-dev amd64 3.13.7-1 [504 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 python3-dev amd64 3.13.5-1 [26.1 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 108 http://deb.debian.org/debian forky/main amd64 python3-nanobind all 2.5.0-1 [41.8 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 python3-pybind11 all 2.13.6-2 [215 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 python3-pytest all 8.3.5-2 [250 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Fetched 59.7 MB in 16s (3693 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Oct 3 04:28:33 UTC 2026. Universal Time is now: Sat Oct 3 04:28:33 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libexpat1-dev:amd64 (2.7.1-2) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Setting up autopoint (0.23.1-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libgfortran5:amd64 (15.2.0-1) ... Setting up autoconf (2.72-3.1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/gemmi-0.7.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gemmi_0.7.1+ds-1_source.changes dpkg-buildpackage: info: source package gemmi dpkg-buildpackage: info: source version 0.7.1+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds' dh_auto_configure -- -DBUILD_SHARED_LIBS=OFF -DUSE_PYTHON=ON cd obj-x86_64-linux-gnu && PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DUSE_PYTHON=ON .. -- The C compiler identification is GNU 14.3.0 -- The CXX compiler identification is GNU 14.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Gemmi version 0.7.1 -- Build type: None -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") -- Benchmarks not configured. -- The python module will be built. -- Found Python: /usr/bin/python3 (found version "3.13.7") found components: Interpreter Development.Module -- Found nanobind 2.5.0: /usr/share/nanobind -- Configuring done (2.4s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gemmi-0.7.1+ds -B/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/gemmi_cpp.dir/build.make CMakeFiles/gemmi_cpp.dir/depend make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/depend make -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/options.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/build make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/build make -f CMakeFiles/gemmi_cpp.dir/build.make CMakeFiles/gemmi_cpp.dir/build make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' [ 5%] Building CXX object CMakeFiles/options.dir/prog/options.cpp.o [ 5%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o [ 5%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/align.cpp.o [ 5%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/ddl.cpp.o [ 5%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o [ 7%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o [ 7%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o [ 11%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/crd.cpp.o [ 11%] Building CXX object 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CMakeFiles/gemmi_cpp.dir/src/json.cpp.o CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o CMakeFiles/gemmi_cpp.dir/src/mmread_gz.cpp.o CMakeFiles/gemmi_cpp.dir/src/monlib.cpp.o CMakeFiles/gemmi_cpp.dir/src/mtz.cpp.o CMakeFiles/gemmi_cpp.dir/src/mtz2cif.cpp.o CMakeFiles/gemmi_cpp.dir/src/pdb.cpp.o CMakeFiles/gemmi_cpp.dir/src/polyheur.cpp.o CMakeFiles/gemmi_cpp.dir/src/read_cif.cpp.o CMakeFiles/gemmi_cpp.dir/src/resinfo.cpp.o CMakeFiles/gemmi_cpp.dir/src/riding_h.cpp.o CMakeFiles/gemmi_cpp.dir/src/select.cpp.o CMakeFiles/gemmi_cpp.dir/src/sprintf.cpp.o CMakeFiles/gemmi_cpp.dir/src/symmetry.cpp.o CMakeFiles/gemmi_cpp.dir/src/to_json.cpp.o CMakeFiles/gemmi_cpp.dir/src/to_mmcif.cpp.o CMakeFiles/gemmi_cpp.dir/src/to_pdb.cpp.o CMakeFiles/gemmi_cpp.dir/src/topo.cpp.o CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o /usr/bin/ranlib libgemmi_cpp.a make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' [ 41%] Built target gemmi_cpp make -f 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/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/sfcalc.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/sfcalc.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/sfcalc.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/sfcalc.cpp [ 92%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/sg.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/sg.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/sg.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/sg.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/sg.cpp [ 94%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/tags.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/tags.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/tags.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/tags.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/tags.cpp [ 94%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/validate.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/validate.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/validate.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/validate.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/validate.cpp [ 96%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/validate_mon.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/validate_mon.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/validate_mon.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/validate_mon.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/validate_mon.cpp [ 96%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/wcn.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/wcn.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/wcn.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/wcn.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/wcn.cpp [ 98%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/xds2mtz.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/xds2mtz.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/xds2mtz.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/xds2mtz.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/xds2mtz.cpp [ 98%] Linking CXX executable gemmi /usr/bin/cmake -E cmake_link_script CMakeFiles/gemmi_prog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 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/usr/lib/x86_64-linux-gnu/libz.so make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' [100%] Built target gemmi_py make -f CMakeFiles/gemmi_stub.dir/build.make CMakeFiles/gemmi_stub.dir/depend make -f CMakeFiles/gemmi_cif_stub.dir/build.make CMakeFiles/gemmi_cif_stub.dir/depend make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_stub.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && 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Dependencies file "CMakeFiles/gemmi_cpp.dir/src/ccp4.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/hello.dir/build.make CMakeFiles/hello.dir/build Dependencies file "CMakeFiles/gemmi_cpp.dir/src/crd.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". make -f CMakeFiles/doc_example2.dir/build.make CMakeFiles/doc_example2.dir/build Dependencies file "CMakeFiles/gemmi_cpp.dir/src/ddl.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/fprime.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target options make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_cpp.dir/src/gz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_cpp.dir/src/intensit.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/json.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/build Dependencies file "CMakeFiles/gemmi_cpp.dir/src/mmread_gz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/monlib.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". 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Dependencies file "CMakeFiles/gemmi_cpp.dir/src/to_mmcif.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/to_pdb.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/topo.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". [ 2%] Building CXX object CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o /usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o -MF CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o.d -o CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/docs/code/cif_cc.cpp [ 4%] Building CXX object CMakeFiles/hello.dir/examples/hello.cpp.o /usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/hello.dir/examples/hello.cpp.o -MF CMakeFiles/hello.dir/examples/hello.cpp.o.d -o CMakeFiles/hello.dir/examples/hello.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/examples/hello.cpp [ 6%] Built target options Consolidate compiler generated dependencies of target gemmi_cpp make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/gemmi_cpp.dir/build.make CMakeFiles/gemmi_cpp.dir/build make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/gemmi_cpp.dir/build'. make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' [ 39%] Built target gemmi_cpp make -f CMakeFiles/gemmi_prog.dir/build.make CMakeFiles/gemmi_prog.dir/depend make -f CMakeFiles/cpptest.dir/build.make CMakeFiles/cpptest.dir/depend make -f 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/doc_example.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd 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'/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/check_conn.dir/DependInfo.cmake "--color=" Dependencies file "CMakeFiles/gemmi_prog.dir/prog/align.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". 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Dependencies file "CMakeFiles/gemmi_prog.dir/prog/cif2mtz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_prog.dir/prog/cifdiff.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". make -f CMakeFiles/cpptest.dir/build.make CMakeFiles/cpptest.dir/build Dependencies file "CMakeFiles/gemmi_prog.dir/prog/contact.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". make -f CMakeFiles/doc_example.dir/build.make CMakeFiles/doc_example.dir/build make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_prog.dir/prog/contents.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". make -f CMakeFiles/doc_newmtz.dir/build.make CMakeFiles/doc_newmtz.dir/build make -f CMakeFiles/check_conn.dir/build.make CMakeFiles/check_conn.dir/build Dependencies file "CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/crd.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_prog.dir/prog/fprime.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/test_disulf.dir/build.make CMakeFiles/test_disulf.dir/build Dependencies file "CMakeFiles/gemmi_prog.dir/prog/h.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". 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Dependencies file "CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/merge.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/mondiff.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/monlib_opt.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/mtz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/mtz2cif.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/reindex.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/residues.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/rmsz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/set.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/sf2map.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". 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[ 43%] Building CXX object CMakeFiles/doc_example.dir/docs/code/elem.cpp.o [ 43%] Building CXX object CMakeFiles/cpptest.dir/tests/windowsh.cpp.o [ 43%] Building CXX object CMakeFiles/check_conn.dir/examples/check_conn.cpp.o [ 43%] Building CXX object CMakeFiles/cpptest.dir/tests/main.cpp.o [ 43%] Building CXX object CMakeFiles/doc_example.dir/docs/code/sym.cpp.o [ 43%] Building CXX object CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o [ 45%] Building CXX object CMakeFiles/doc_example.dir/docs/code/cell.cpp.o [ 45%] Building CXX object CMakeFiles/doc_example.dir/docs/code/mutate.cpp.o [ 47%] Building CXX object CMakeFiles/doc_example.dir/src/resinfo.cpp.o [ 47%] Building CXX object CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o /usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast 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/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/check.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' /usr/bin/ctest -C "None" Test project /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu Connected to MAKE jobserver Start 1: cpptest 1/1 Test #1: cpptest .......................... Passed 0.00 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.00 sec make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' [100%] Built target check make[4]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds' dh_auto_test -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: cpptest 1: Test command: /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/cpptest 1: Working Directory: /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu 1: Test timeout computed to be: 10000000 1: [doctest] doctest version is "2.4.12" 1: [doctest] run with "--help" for options 1: =============================================================================== 1: [doctest] test cases: 14 | 14 passed | 0 failed | 0 skipped 1: [doctest] assertions: 129 | 129 passed | 0 failed | 1: [doctest] Status: SUCCESS! 1/1 Test #1: cpptest .......................... Passed 0.00 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.00 sec make[1]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/gemmi-0.7.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gemmi-0.7.1+ds -B/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/bin/gemmi -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/seqid.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fourier.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/smcif.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/intensit.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/pirfasta.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fail.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/xds2mtz.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/cellred.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/contact.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fprime.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/neighbor.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_json.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/cif.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/qcp.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/polyheur.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_mmcif.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/pdb.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/calculate.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/chemcomp.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/neutron92.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/scaling.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/bond_idx.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/binner.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/refln.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/dencalc.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/model.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/modify.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/bessel.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/cif2mtz.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/stats.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_chemcomp.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmcif.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/recgrid.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/c4322.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fileutil.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/small.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/elem.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mtz2cif.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/assembly.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/util.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/eig3.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/crd.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/json.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmdb.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/pdb_id.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/asudata.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/atof.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/sfcalc.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/symmetry.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/reciproc.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/asumask.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/ccp4.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/serialize.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmread_gz.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/linkhunt.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/topo.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/formfact.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/read_cif.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/monlib.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/sprintf.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/iterator.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/logger.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/grid.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/addends.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_pdb.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/blob.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/span.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/floodfill.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/math.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/input.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/enumstr.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/ddl.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/dirwalk.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/gz.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/metadata.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/unitcell.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/levmar.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/utf.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/cifdoc.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/xds_ascii.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/third_party -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/third_party/pocketfft_hdronly.h -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/third_party/fast_float.h -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/third_party/tinydir.h -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/riding_h.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/interop.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/ecalc.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/numb.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/seqalign.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fstream.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/version.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/resinfo.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/twin.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/select.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/solmask.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_cif.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/atox.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmread.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/seqtools.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mtz.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/align.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmcif_impl.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/it92.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libgemmi_cpp.a -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-targets.cmake -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-targets-none.cmake -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-config.cmake -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-config-version.cmake -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/gemmi_ext.cpython-313-x86_64-linux-gnu.so -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/ccd_gi.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/matthews.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/monomers.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/weight.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/mtz_i_sigi.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/long_geom.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/mtrix_iso.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/rama_plot.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/rama_gather.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/qq-plot.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/map2mtz.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/sub_ccd.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/ccd_subgraph.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/refln-stats.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/maskdiff.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/merge_mtz_mmcif.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/from_json.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/multiproc.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/to_rdkit.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/patterson_slice.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/col_order.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/aafreq.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/simple_search.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/maskcheck.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/cif_i_sigi.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/hello.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/__init__.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/py.typed -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/__init__.pyi -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/cif.pyi make[1]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds' help2man 'tail -n +9 docs/gemmi-help.txt' \ --version-string 0.7.1+ds --name 'CLI for GEMMI library' \ --no-info --help-option '' > debian/gemmi.1 sed -i 's/.TH GEMMI-HELP.TXT/.TH gemmi/' debian/gemmi.1 sed -i 's/gemmi-help.txt/gemmi/' debian/gemmi.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds' dh_python3 -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: Provides field of package python3-gemmi: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-gemmi: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'gemmi' in '../gemmi_0.7.1+ds-1_amd64.deb'. dpkg-deb: building package 'gemmi-dbgsym' in '../gemmi-dbgsym_0.7.1+ds-1_amd64.deb'. dpkg-deb: building package 'gemmi-dev' in '../gemmi-dev_0.7.1+ds-1_amd64.deb'. dpkg-deb: building package 'python3-gemmi' in '../python3-gemmi_0.7.1+ds-1_amd64.deb'. dpkg-deb: building package 'python3-gemmi-dbgsym' in '../python3-gemmi-dbgsym_0.7.1+ds-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../gemmi_0.7.1+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../gemmi_0.7.1+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1150161 and its subdirectories I: Current time: Fri Oct 2 16:31:07 -12 2026 I: pbuilder-time-stamp: 1791001867 Sat Aug 30 22:08:10 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sat Aug 30 22:08:10 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sat Aug 30 22:12:28 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sat Aug 30 22:12:28 UTC 2025 I: gemmi_0.7.1+ds-1_amd64.changes: Format: 1.8 Date: Wed, 27 Aug 2025 23:29:13 -0400 Source: gemmi Binary: gemmi gemmi-dbgsym gemmi-dev python3-gemmi python3-gemmi-dbgsym Architecture: amd64 Version: 0.7.1+ds-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andrius Merkys Description: gemmi - library for structural biology - executable gemmi-dev - library for structural biology python3-gemmi - library for structural biology - Python module Changes: gemmi (0.7.1+ds-1) unstable; urgency=medium . * Upload to unstable. * Drop adjust-test-tolerance.patch: fix incorporated upstream. Checksums-Sha1: 01283bcd3a8a2880658d581d3a8f8f51f2c05fb2 32696276 gemmi-dbgsym_0.7.1+ds-1_amd64.deb 43a8f2925fb46e47c6c1e27f3696023b722a8084 1186312 gemmi-dev_0.7.1+ds-1_amd64.deb e7ecf21533057fe00b173010ff99aee16966cea7 8391 gemmi_0.7.1+ds-1_amd64.buildinfo c8512cc60e952431560b48e62195259489cea26c 1370740 gemmi_0.7.1+ds-1_amd64.deb 050b30853d37ba0aa10ed20ccb996c52ed3281cd 40305168 python3-gemmi-dbgsym_0.7.1+ds-1_amd64.deb c095428e17699491491636d588275c732be4300f 1917804 python3-gemmi_0.7.1+ds-1_amd64.deb Checksums-Sha256: 1d3bfea565573185f8878061a0e9addffe669a365eaec7def18cbb2e90e117e5 32696276 gemmi-dbgsym_0.7.1+ds-1_amd64.deb e52de05dd14abde41a05a3a18a26315dfeaa2f8d5c4dbbf2085bc28cd301f614 1186312 gemmi-dev_0.7.1+ds-1_amd64.deb 3b5fdba36f146d87a988655aac38b40fc8a04065aac8f3256b6d6a02faa66439 8391 gemmi_0.7.1+ds-1_amd64.buildinfo a6955c126b40b5dfd939cca41a9d02e75f5f08525db9281600374608ad35ffbc 1370740 gemmi_0.7.1+ds-1_amd64.deb 59ec1f2f60f89c34580574a9cf083276e2dca443adc614a764a3a23e936357e3 40305168 python3-gemmi-dbgsym_0.7.1+ds-1_amd64.deb cfa2bf11f7236894347b691c13175ee20903f621a1eac8637899372ef3d7864b 1917804 python3-gemmi_0.7.1+ds-1_amd64.deb Files: c780c3b085d84f0adf23b75133da2946 32696276 debug optional gemmi-dbgsym_0.7.1+ds-1_amd64.deb befb3a90de1e204313b83338e9b8773a 1186312 libdevel optional gemmi-dev_0.7.1+ds-1_amd64.deb 0f7eb41b812298c16c03d6b01df7604d 8391 science optional gemmi_0.7.1+ds-1_amd64.buildinfo 404d5b80645a11dde631300a810dc97b 1370740 science optional gemmi_0.7.1+ds-1_amd64.deb 53078f727975965888135b740c53c50a 40305168 debug optional python3-gemmi-dbgsym_0.7.1+ds-1_amd64.deb 5cd39cd06c0e78b9ce8205b8b4225efd 1917804 python optional python3-gemmi_0.7.1+ds-1_amd64.deb Sat Aug 30 22:12:29 UTC 2025 I: diffoscope 305 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_28-71259.service; invocation ID: 0b385f64aad24b08aad562130c954fad # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Cw9liPZA/gemmi_0.7.1+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Cw9liPZA/gemmi_0.7.1+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Cw9liPZA/gemmi_0.7.1+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Cw9liPZA/b1/gemmi_0.7.1+ds-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Cw9liPZA/b2/gemmi_0.7.1+ds-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 222ms CPU time consumed: 178ms Memory peak: 19M (swap: 0B) Sat Aug 30 22:18:39 UTC 2025 I: diffoscope 305 found no differences in the changes files, and a .buildinfo file also exists. Sat Aug 30 22:18:39 UTC 2025 I: gemmi from forky built successfully and reproducibly on amd64. Sat Aug 30 22:18:41 UTC 2025 I: Removing signed gemmi_0.7.1+ds-1_amd64.buildinfo.asc files: removed './b1/gemmi_0.7.1+ds-1_amd64.buildinfo.asc' removed './b2/gemmi_0.7.1+ds-1_amd64.buildinfo.asc'