Thu Sep 18 00:15:15 UTC 2025 I: starting to build genomicsdb/forky/amd64 on jenkins on '2025-09-18 00:14' Thu Sep 18 00:15:15 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_22/58932/console.log Thu Sep 18 00:15:15 UTC 2025 I: Downloading source for forky/genomicsdb=1.5.5-1 --2025-09-18 00:15:15-- http://deb.debian.org/debian/pool/main/g/genomicsdb/genomicsdb_1.5.5-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3408 (3.3K) [text/prs.lines.tag] Saving to: ‘genomicsdb_1.5.5-1.dsc’ 0K ... 100% 399M=0s 2025-09-18 00:15:15 (399 MB/s) - ‘genomicsdb_1.5.5-1.dsc’ saved [3408/3408] Thu Sep 18 00:15:15 UTC 2025 I: genomicsdb_1.5.5-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: genomicsdb Binary: libgenomicsdb-java, libgenomicsdb-jni, genomicsdb-tools, libgenomicsdb1, libgenomicsdb-dev Architecture: any all Version: 1.5.5-1 Maintainer: Debian Med Packaging Team Uploaders: Pierre Gruet Homepage: https://www.genomicsdb.org/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/genomicsdb Vcs-Git: https://salsa.debian.org/med-team/genomicsdb.git Testsuite: autopkgtest Testsuite-Triggers: default-jdk Build-Depends: debhelper-compat (= 13), cmake, default-jdk, javahelper, libbz2-dev, libcatch2-dev, libcurlpp-dev, libfmt-dev, libmuparserx-dev, libprotobuf-dev, libspdlog-dev, libssl-dev, liblzma-dev, maven-debian-helper, mpi-default-dev, protobuf-compiler, rapidjson-dev, testng , uuid-dev Build-Depends-Arch: chrpath Build-Depends-Indep: libbuild-helper-maven-plugin-java, libcommons-io-java, libcommons-lang3-java, libgetopt-java, libguava-java, libhtsjdk-java, libjson-simple-java, liblog4j2-java, libmaven-antrun-plugin-java, libprotobuf-java, libsurefire-java Package-List: genomicsdb-tools deb science optional arch=any libgenomicsdb-dev deb libdevel optional arch=any libgenomicsdb-java deb java optional arch=all libgenomicsdb-jni deb java optional arch=any libgenomicsdb1 deb libs optional arch=any Checksums-Sha1: 7ea1900a53e268033361ac191fcccb2950345bad 1515241 genomicsdb_1.5.5.orig-genomicsdb-htslib.tar.gz f8ffebe78eb16bdd861113721345fcc6e41ebce4 950908 genomicsdb_1.5.5.orig-genomicsdb-tiledb.tar.gz 5d152f3aa61a24c24ae5f24aa5632affee0331b8 6765900 genomicsdb_1.5.5.orig.tar.gz d846a3a7e691e528d7ed378834f51c05737ecbdc 29308 genomicsdb_1.5.5-1.debian.tar.xz Checksums-Sha256: 32483d1b3a37559e0f328af27a8ec67197606899796dd4e580612bd6f32cd9f3 1515241 genomicsdb_1.5.5.orig-genomicsdb-htslib.tar.gz 0f5efdfda79948e2cf706d8f921599080a88ba465c4956398feab017679e9f16 950908 genomicsdb_1.5.5.orig-genomicsdb-tiledb.tar.gz fcf3b7104e9903cb3359d5a29e065c849f90f97c842ac5c76d525a1343c1afe7 6765900 genomicsdb_1.5.5.orig.tar.gz 409b511381c6150d86a2fa2d66d2ccd902dc62ea1c31fe6f4bbc2f176e314e17 29308 genomicsdb_1.5.5-1.debian.tar.xz Files: 89a7133f35d70b5520d583c93b9cbe94 1515241 genomicsdb_1.5.5.orig-genomicsdb-htslib.tar.gz 873d71eddc39cc659a713dba862c4fec 950908 genomicsdb_1.5.5.orig-genomicsdb-tiledb.tar.gz 33e00d57a40c62956218ee5f1db8aca4 6765900 genomicsdb_1.5.5.orig.tar.gz e2279fa554976b3d5918d88dbf79bed7 29308 genomicsdb_1.5.5-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmiy7w8ACgkQYAMWptwn dHY+gQ/+KeA2m5uWBtJYFQdME8bFgar2J65ZJt62VSqU1eVonJUmZbhrrxZgAEh2 6dTEFhUMc3/MN55Bqi+sDIab30UkX0HHxeKIsMQX72iizVOqt4JF0nfToMm8Eo2/ NqJJg05XDl9E/p8G6qj+xWVQgOouM8dPIKdWlA0R+lXhyJ7GaDX2zq/eGAHEV188 Yn/c/leT5wjFRCaOJo0k7meHeWyfhKh5q7GqJT3a9+MQljgmCiVlGxyjRuqACRF8 /x3ukxDnuCbpWsgo/6MBM3nbnPVShgokI9teKkoIdhsTafwifwm1TQOCXtc6/bsi 8pgvkP+kGiCnb2Rr1TEnyYkFBTVkU4EAYzR3WT78JmwKlma4nPVYlX7CWTlmbPqd UMIYJl4C3JSQrkiors4etI7dnlHFUnXMfzTtTwXmE6y7zD1XWdOZ/8Kek7hfobxG 7yJNv2m1hHTq473rOw3IOLojJ5LjPiwuSw423dJtjOqymuL177xOUIfDsDLU0+nh 9m/2Q1TsaVco1peJUY0frkDFLQTsGOlMyYEjVcFPPyzw5nnMPWQ71VboM8TXP4u/ WqH38G2BiCx8n/7A9wyUGIYjJlCeK9McUECaBtIKMXxoGUyFZ1CbcIaArH7OPrWc 6kggb/MNCiDiJiwPi7lQDp2ocmMKKLL08hi6CxwjF7E1F9YjfKI= =C49h -----END PGP SIGNATURE----- Thu Sep 18 00:15:15 UTC 2025 I: Checking whether the package is not for us Thu Sep 18 00:15:15 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Thu Sep 18 00:15:15 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Thu Sep 18 00:24:19 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 20 18:38:16 -12 2026 I: pbuilder-time-stamp: 1792564696 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [genomicsdb_1.5.5-1.dsc] I: copying [./genomicsdb_1.5.5.orig-genomicsdb-htslib.tar.gz] I: copying [./genomicsdb_1.5.5.orig-genomicsdb-tiledb.tar.gz] I: copying [./genomicsdb_1.5.5.orig.tar.gz] I: copying [./genomicsdb_1.5.5-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./genomicsdb_1.5.5-1.dsc: no acceptable signature found dpkg-source: info: extracting genomicsdb in genomicsdb-1.5.5 dpkg-source: info: unpacking genomicsdb_1.5.5.orig.tar.gz dpkg-source: info: unpacking genomicsdb_1.5.5.orig-genomicsdb-htslib.tar.gz dpkg-source: info: unpacking genomicsdb_1.5.5.orig-genomicsdb-tiledb.tar.gz dpkg-source: info: unpacking genomicsdb_1.5.5-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_download_of_dependencies.patch dpkg-source: info: applying using_htslib_from_component.patch dpkg-source: info: applying using_timedb_from_component.patch dpkg-source: info: applying strip_tiledb_CMakeLists.patch dpkg-source: info: applying ignoring_sdk_to_download.patch dpkg-source: info: applying use_shared_protobuf_lib.patch dpkg-source: info: applying missing_links_in_libs.patch dpkg-source: info: applying pom.patch dpkg-source: info: applying no_spark_in_Java_build.patch dpkg-source: info: applying tests_in_all_target.patch dpkg-source: info: applying run_tests_in_not_yet_installed_dir.patch dpkg-source: info: applying build_jni.patch dpkg-source: info: applying library_names_and_install_paths.patch dpkg-source: info: applying htslib_define_PATH_MAX.patch dpkg-source: info: applying htslib_testShebang.patch dpkg-source: info: applying htslib_fix_float_precision dpkg-source: info: applying handling_rpaths.patch dpkg-source: info: applying disabling_mpi_for_tests.patch dpkg-source: info: applying JsonFormat_from_libprotobuf-java.patch dpkg-source: info: applying gcc-13.patch dpkg-source: info: applying catch2_3.patch dpkg-source: info: applying variant_array_schema_hidden_if_no_DEBUG.patch dpkg-source: info: applying rapidjson_methods.patch dpkg-source: info: applying query_config_serialization.patch dpkg-source: info: applying fmt10.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/509046/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='48fbf4450ea94010a2be56bd592a53a0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='509046' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bbem8Wcv/pbuilderrc_e0hs --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bbem8Wcv/b1 --logfile b1/build.log genomicsdb_1.5.5-1.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/509046/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, default-jdk, javahelper, libbz2-dev, libcatch2-dev, libcurlpp-dev, libfmt-dev, libmuparserx-dev, libprotobuf-dev, libspdlog-dev, libssl-dev, liblzma-dev, maven-debian-helper, mpi-default-dev, protobuf-compiler, rapidjson-dev, testng, uuid-dev, libbuild-helper-maven-plugin-java, libcommons-io-java, libcommons-lang3-java, libgetopt-java, libguava-java, libhtsjdk-java, libjson-simple-java, liblog4j2-java, libmaven-antrun-plugin-java, libprotobuf-java, libsurefire-java, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libcatch2-dev; however: Package libcatch2-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurlpp-dev; however: Package libcurlpp-dev is not installed. pbuilder-satisfydepends-dummy depends on libfmt-dev; however: Package libfmt-dev is not installed. pbuilder-satisfydepends-dummy depends on libmuparserx-dev; however: Package libmuparserx-dev is not installed. pbuilder-satisfydepends-dummy depends on libprotobuf-dev; however: Package libprotobuf-dev is not installed. pbuilder-satisfydepends-dummy depends on libspdlog-dev; however: Package libspdlog-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on liblzma-dev; however: Package liblzma-dev is not installed. pbuilder-satisfydepends-dummy depends on maven-debian-helper; however: Package maven-debian-helper is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on protobuf-compiler; however: Package protobuf-compiler is not installed. pbuilder-satisfydepends-dummy depends on rapidjson-dev; however: Package rapidjson-dev is not installed. pbuilder-satisfydepends-dummy depends on testng; however: Package testng is not installed. pbuilder-satisfydepends-dummy depends on uuid-dev; however: Package uuid-dev is not installed. pbuilder-satisfydepends-dummy depends on libbuild-helper-maven-plugin-java; however: Package libbuild-helper-maven-plugin-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-io-java; however: Package libcommons-io-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-lang3-java; however: Package libcommons-lang3-java is not installed. pbuilder-satisfydepends-dummy depends on libgetopt-java; however: Package libgetopt-java is not installed. pbuilder-satisfydepends-dummy depends on libguava-java; however: Package libguava-java is not installed. pbuilder-satisfydepends-dummy depends on libhtsjdk-java; however: Package libhtsjdk-java is not installed. pbuilder-satisfydepends-dummy depends on libjson-simple-java; however: Package libjson-simple-java is not installed. pbuilder-satisfydepends-dummy depends on liblog4j2-java; however: Package liblog4j2-java is not installed. pbuilder-satisfydepends-dummy depends on libmaven-antrun-plugin-java; however: Package libmaven-antrun-plugin-java is not installed. pbuilder-satisfydepends-dummy depends on libprotobuf-java; however: Package libprotobuf-java is not installed. pbuilder-satisfydepends-dummy depends on libsurefire-java; however: Package libsurefire-java is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} ant{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} chrpath{a} cmake{a} cmake-data{a} comerr-dev{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} fastjar{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran-15{a} gfortran-15-x86-64-linux-gnu{a} gpg{a} gpg-agent{a} gpgconf{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} ibverbs-providers{a} intltool-debian{a} jarwrapper{a} java-common{a} javahelper{a} junit4{a} junit5{a} krb5-multidev{a} libamd-comgr2{a} libamdhip64-5{a} libaopalliance-java{a} libapache-pom-java{a} libapiguardian-java{a} libapparmor1{a} libarchive-zip-perl{a} libarchive13t64{a} libasm-java{a} libasound2-data{a} libasound2t64{a} libassuan9{a} libatinject-jsr330-api-java{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libbrotli-dev{a} libbrotli1{a} libbsh-java{a} libbuild-helper-maven-plugin-java{a} libbz2-dev{a} libcairo-gobject2{a} libcairo2{a} libcatch2-dev{a} libcbor0.10{a} libcdi-api-java{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcommons-beanutils-java{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-collections4-java{a} libcommons-compress-java{a} libcommons-digester-java{a} libcommons-io-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcommons-text-java{a} libcommons-validator-java{a} libcups2t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcurlpp-dev{a} libcurlpp0t64{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdom4j-java{a} libdoxia-core-java{a} libdoxia-java{a} libdoxia-sitetools-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libel-api-java{a} libelf1t64{a} libencode-locale-perl{a} libepoxy0{a} liberror-prone-java{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libezmorph-java{a} libfabric1{a} libffi8{a} libfido2-1{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libfmt-dev{a} libfmt10{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgcrypt20{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgetopt-java{a} libgfortran-15-dev{a} libgfortran5{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgoogle-gson-java{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgtk-3-0t64{a} libgtk-3-common{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhsa-runtime64-1{a} libhsakmt1{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhtsjdk-java{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhttpclient-java{a} libhttpcore-java{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libidn2-0{a} libidn2-dev{a} libimport-into-perl{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libjansi-java{a} libjaxen-java{a} libjbig0{a} libjcommander-java{a} libjetty9-java{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjson-java{a} libjson-simple-java{a} libjsoncpp26{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjtidy-java{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libksba8{a} liblcms2-2{a} libldap-dev{a} libldap2{a} liblerc4{a} liblightcouch-java{a} libllvm17t64{a} libllvm19{a} liblog4j2-java{a} libltdl-dev{a} libltdl7{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmaven-antrun-plugin-java{a} libmaven-archiver-java{a} libmaven-clean-plugin-java{a} libmaven-common-artifact-filters-java{a} libmaven-compiler-plugin-java{a} libmaven-file-management-java{a} libmaven-filtering-java{a} libmaven-jar-plugin-java{a} libmaven-parent-java{a} libmaven-plugin-tools-java{a} libmaven-reporting-api-java{a} libmaven-reporting-exec-java{a} libmaven-reporting-impl-java{a} libmaven-resolver-java{a} libmaven-resources-plugin-java{a} libmaven-shared-incremental-java{a} libmaven-shared-io-java{a} libmaven-shared-utils-java{a} libmaven-site-plugin-java{a} libmaven3-core-java{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libmodule-runtime-perl{a} libmongodb-java{a} libmoo-perl{a} libmuparserx-dev{a} libmuparserx4.0.12{a} libncbi-ngs3{a} libncbi-vdb3{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngs-java{a} libngs-jni{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnpth0t64{a} libnspr4{a} libnss3{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi40{a} libopentest4j-java{a} libopentest4j-reporting-java{a} liboro-java{a} libp11-kit-dev{a} libp11-kit0{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libpciaccess0{a} libpcsclite1{a} libpicocli-java{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libplexus-ant-factory-java{a} libplexus-archiver-java{a} libplexus-bsh-factory-java{a} libplexus-build-api-java{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-compiler-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-container-default1.5-java{a} libplexus-i18n-java{a} libplexus-interpolation-java{a} libplexus-io-java{a} libplexus-languages-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libplexus-velocity-java{a} libplexus-xml-java{a} libpng16-16t64{a} libproc2-0{a} libprotobuf-dev{a} libprotobuf-java{a} libprotobuf-lite32t64{a} libprotobuf32t64{a} libprotoc32t64{a} libpsl-dev{a} libpsl5t64{a} libpsm2-2{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqdox2-java{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librhino-java{a} librole-tiny-perl{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libsharpyuv0{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspdlog-dev{a} libspdlog1.15{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsub-quote-perl{a} libsurefire-java{a} libsystemd-shared{a} libtasn1-6{a} libtasn1-6-dev{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libucx0{a} libunbound8{a} libunistring5{a} libunivocity-parsers-java{a} liburi-perl{a} libuv1t64{a} libvelocity-tools-java{a} libvulkan1{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwebp7{a} libwebsocket-api-java{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2-16{a} libxml2-utils{a} libxnvctrl0{a} libxom-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libz3-4{a} libze1{a} libzstd-dev{a} m4{a} man-db{a} maven{a} maven-debian-helper{a} maven-repo-helper{a} media-types{a} mesa-libgallium{a} mpi-default-dev{a} ncbi-vdb-data{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} protobuf-compiler{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} rapidjson-dev{a} readline-common{a} rsopv{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} systemd{a} systemd-sysv{a} testng{a} tzdata{a} unzip{a} uuid-dev{a} velocity{a} wdiff{a} x11-common{a} xkb-data{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf ant-optional at-spi2-core bzip2-doc chrony curl debian-keyring debian-tag2upload-keyring dput dput-ng dupload equivs fonts-dejavu-extra git-debpush gnupg javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libcoarrays-openmpi-dev libdata-dump-perl libdistro-info-perl libgdk-pixbuf2.0-bin libgitlab-api-v4-perl libglib2.0-data libgpg-error-l10n libgtk-3-bin libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libkmod2 libldap-common libmail-sendmail-perl libmailtools-perl libmetacpan-client-perl libnamespace-clean-perl libnss-systemd librsvg2-common libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libtasn1-doc libxstring-perl libxt-dev libyaml-snake-java licensecheck lintian linux-sysctl-defaults lynx lzip mesa-vulkan-drivers ntpsec openntpd pristine-tar psmisc publicsuffix python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace systemd-cryptsetup systemd-timesyncd wget xauth xdg-user-dirs 0 packages upgraded, 492 newly installed, 0 to remove and 0 not upgraded. Need to get 457 MB of archives. After unpacking 1560 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libsystemd-shared amd64 258~rc4-1 [2242 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 systemd amd64 258~rc4-1 [3222 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 systemd-sysv amd64 258~rc4-1 [62.7 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 libdbus-1-3 amd64 1.16.2-2 [178 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 dbus-bin amd64 1.16.2-2 [80.0 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 dbus-session-bus-common all 1.16.2-2 [52.3 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 libapparmor1 amd64 4.1.0-1 [43.7 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 dbus-daemon amd64 1.16.2-2 [159 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 dbus-system-bus-common all 1.16.2-2 [53.5 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 dbus amd64 1.16.2-2 [71.6 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 binfmt-support amd64 2.2.2-7 [64.3 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libpam-systemd amd64 258~rc4-1 [314 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libfido2-1 amd64 1.16.0-2 [78.8 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 48 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 openssh-client amd64 1:10.0p1-8 [986 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-5 [312 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.0-5 [364 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-5 [141 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 gtk-update-icon-cache amd64 4.20.1+ds-2 [53.4 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 hicolor-icon-theme all 0.18-2 [11.8 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 adwaita-icon-theme all 49~rc-1 [507 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 java-common all 0.76 [6776 B] Get: 69 http://deb.debian.org/debian forky/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libnspr4 amd64 2:4.36-1 [110 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libnss3 amd64 2:3.114-1 [1399 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libpcsclite1 amd64 2.3.3-1 [55.2 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 openjdk-21-jre-headless amd64 21.0.9~5ea-1 [42.2 MB] Get: 74 http://deb.debian.org/debian forky/main amd64 default-jre-headless amd64 2:1.21-76 [3192 B] Get: 75 http://deb.debian.org/debian forky/main amd64 ant all 1.10.15-1 [2163 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 at-spi2-common all 2.58.0-1 [173 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 chrpath amd64 0.18-1 [13.5 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 cmake-data all 4.1.1+really3.31.6-1 [2268 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.11.0-1 [73.7 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.15.0-1 [392 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 cmake amd64 4.1.1+really3.31.6-1 [12.0 MB] Get: 104 http://deb.debian.org/debian forky/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 dbus-user-session amd64 1.16.2-2 [52.1 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 libdconf1 amd64 0.40.0-5 [41.8 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 dconf-service amd64 0.40.0-5 [32.4 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 dconf-gsettings-backend amd64 0.40.0-5 [28.6 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 116 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 120 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 122 http://deb.debian.org/debian forky/main amd64 libatk1.0-0t64 amd64 2.58.0-1 [57.9 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 124 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 125 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 libatspi2.0-0t64 amd64 2.58.0-1 [89.8 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libatk-bridge2.0-0t64 amd64 2.58.0-1 [76.4 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 133 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 134 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 135 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 137 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 140 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 142 http://deb.debian.org/debian forky/main amd64 libcairo-gobject2 amd64 1.18.4-1+b1 [130 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 libcloudproviders0 amd64 0.3.6-2 [29.2 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 libcolord2 amd64 1.4.8-1 [152 kB] Get: 145 http://deb.debian.org/debian forky/main amd64 libavahi-common-data amd64 0.8-17 [112 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 libavahi-common3 amd64 0.8-17 [47.3 kB] Get: 147 http://deb.debian.org/debian forky/main amd64 libavahi-client3 amd64 0.8-17 [52.1 kB] Get: 148 http://deb.debian.org/debian forky/main amd64 libcups2t64 amd64 2.4.10-4 [267 kB] Get: 149 http://deb.debian.org/debian forky/main amd64 libepoxy0 amd64 1.5.10-2 [193 kB] Get: 150 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 151 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-3 [75.1 kB] Get: 152 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 11.4.5-1 [505 kB] Get: 153 http://deb.debian.org/debian forky/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get: 154 http://deb.debian.org/debian forky/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 155 http://deb.debian.org/debian forky/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get: 156 http://deb.debian.org/debian forky/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 157 http://deb.debian.org/debian forky/main amd64 libpango-1.0-0 amd64 1.56.3-2 [239 kB] Get: 158 http://deb.debian.org/debian forky/main amd64 libpangoft2-1.0-0 amd64 1.56.3-2 [62.0 kB] Get: 159 http://deb.debian.org/debian forky/main amd64 libpangocairo-1.0-0 amd64 1.56.3-2 [38.1 kB] Get: 160 http://deb.debian.org/debian forky/main amd64 libwayland-client0 amd64 1.24.0-2+b1 [28.5 kB] Get: 161 http://deb.debian.org/debian forky/main amd64 libwayland-cursor0 amd64 1.24.0-2+b1 [12.3 kB] Get: 162 http://deb.debian.org/debian forky/main amd64 libwayland-egl1 amd64 1.24.0-2+b1 [6224 B] Get: 163 http://deb.debian.org/debian forky/main amd64 libxcomposite1 amd64 1:0.4.6-1 [16.3 kB] Get: 164 http://deb.debian.org/debian forky/main amd64 libxfixes3 amd64 1:6.0.0-2+b4 [20.2 kB] Get: 165 http://deb.debian.org/debian forky/main amd64 libxcursor1 amd64 1:1.2.3-1 [39.7 kB] Get: 166 http://deb.debian.org/debian forky/main amd64 libxdamage1 amd64 1:1.1.6-1+b2 [15.5 kB] Get: 167 http://deb.debian.org/debian forky/main amd64 libxinerama1 amd64 2:1.1.4-3+b4 [16.0 kB] Get: 168 http://deb.debian.org/debian forky/main amd64 xkb-data all 2.42-1 [790 kB] Get: 169 http://deb.debian.org/debian forky/main amd64 libxkbcommon0 amd64 1.7.0-2.1 [113 kB] Get: 170 http://deb.debian.org/debian forky/main amd64 libxrandr2 amd64 2:1.5.4-1+b3 [36.3 kB] Get: 171 http://deb.debian.org/debian forky/main amd64 libgtk-3-common all 3.24.50-2 [4914 kB] Get: 172 http://deb.debian.org/debian forky/main amd64 libgtk-3-0t64 amd64 3.24.50-2 [2908 kB] Get: 173 http://deb.debian.org/debian forky/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get: 174 http://deb.debian.org/debian forky/main amd64 libdrm-common all 2.4.125-2 [8576 B] Get: 175 http://deb.debian.org/debian forky/main amd64 libdrm2 amd64 2.4.125-2 [39.1 kB] Get: 176 http://deb.debian.org/debian forky/main amd64 libx11-xcb1 amd64 2:1.8.12-1 [247 kB] Get: 177 http://deb.debian.org/debian forky/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get: 178 http://deb.debian.org/debian forky/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get: 179 http://deb.debian.org/debian forky/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get: 180 http://deb.debian.org/debian forky/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get: 181 http://deb.debian.org/debian forky/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b4 [19.3 kB] Get: 182 http://deb.debian.org/debian forky/main amd64 libdrm-amdgpu1 amd64 2.4.125-2 [23.2 kB] Get: 183 http://deb.debian.org/debian forky/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get: 184 http://deb.debian.org/debian forky/main amd64 libdrm-intel1 amd64 2.4.125-2 [64.1 kB] Get: 185 http://deb.debian.org/debian forky/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 186 http://deb.debian.org/debian forky/main amd64 libllvm19 amd64 1:19.1.7-3+b2 [26.0 MB] Get: 187 http://deb.debian.org/debian forky/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get: 188 http://deb.debian.org/debian forky/main amd64 libsensors5 amd64 1:3.6.2-2 [37.5 kB] Get: 189 http://deb.debian.org/debian forky/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get: 190 http://deb.debian.org/debian forky/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get: 191 http://deb.debian.org/debian forky/main amd64 libxshmfence1 amd64 1.3.3-1 [10.9 kB] Get: 192 http://deb.debian.org/debian forky/main amd64 mesa-libgallium amd64 25.2.2-1 [10.1 MB] Get: 193 http://deb.debian.org/debian forky/main amd64 libgbm1 amd64 25.2.2-1 [45.7 kB] Get: 194 http://deb.debian.org/debian forky/main amd64 libvulkan1 amd64 1.4.321.0-1 [133 kB] Get: 195 http://deb.debian.org/debian forky/main amd64 libgl1-mesa-dri amd64 25.2.2-1 [47.4 kB] Get: 196 http://deb.debian.org/debian forky/main amd64 libglx-mesa0 amd64 25.2.2-1 [116 kB] Get: 197 http://deb.debian.org/debian forky/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get: 198 http://deb.debian.org/debian forky/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get: 199 http://deb.debian.org/debian forky/main amd64 libasound2-data all 1.2.14-2 [21.1 kB] Get: 200 http://deb.debian.org/debian forky/main amd64 libasound2t64 amd64 1.2.14-2 [420 kB] Get: 201 http://deb.debian.org/debian forky/main amd64 libgif7 amd64 5.2.2-1+b1 [44.2 kB] Get: 202 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+25 [217 kB] Get: 203 http://deb.debian.org/debian forky/main amd64 libxtst6 amd64 2:1.2.5-1 [25.8 kB] Get: 204 http://deb.debian.org/debian forky/main amd64 openjdk-21-jre amd64 21.0.9~5ea-1 [219 kB] Get: 205 http://deb.debian.org/debian forky/main amd64 default-jre amd64 2:1.21-76 [1068 B] Get: 206 http://deb.debian.org/debian forky/main amd64 openjdk-21-jdk-headless amd64 21.0.9~5ea-1 [83.5 MB] Get: 207 http://deb.debian.org/debian forky/main amd64 default-jdk-headless amd64 2:1.21-76 [1124 B] Get: 208 http://deb.debian.org/debian forky/main amd64 openjdk-21-jdk amd64 21.0.9~5ea-1 [3580 kB] Get: 209 http://deb.debian.org/debian forky/main amd64 default-jdk amd64 2:1.21-76 [1076 B] Get: 210 http://deb.debian.org/debian forky/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get: 211 http://deb.debian.org/debian forky/main amd64 libassuan9 amd64 3.0.2-2 [61.5 kB] Get: 212 http://deb.debian.org/debian forky/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get: 213 http://deb.debian.org/debian forky/main amd64 gpgconf amd64 2.4.8-3 [129 kB] Get: 214 http://deb.debian.org/debian forky/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB] Get: 215 http://deb.debian.org/debian forky/main amd64 libnpth0t64 amd64 1.8-3 [23.2 kB] Get: 216 http://deb.debian.org/debian forky/main amd64 gpg amd64 2.4.8-3 [634 kB] Get: 217 http://deb.debian.org/debian forky/main amd64 pinentry-curses amd64 1.3.2-3 [87.8 kB] Get: 218 http://deb.debian.org/debian forky/main amd64 gpg-agent amd64 2.4.8-3 [271 kB] Get: 219 http://deb.debian.org/debian forky/main amd64 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 220 http://deb.debian.org/debian forky/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 221 http://deb.debian.org/debian forky/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 222 http://deb.debian.org/debian forky/main amd64 libfile-touch-perl all 0.12-2 [8816 B] Get: 223 http://deb.debian.org/debian forky/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 224 http://deb.debian.org/debian forky/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 225 http://deb.debian.org/debian forky/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB] Get: 226 http://deb.debian.org/debian forky/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 227 http://deb.debian.org/debian forky/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get: 228 http://deb.debian.org/debian forky/main amd64 libdevel-callchecker-perl amd64 0.009-2 [15.6 kB] Get: 229 http://deb.debian.org/debian forky/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 230 http://deb.debian.org/debian forky/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get: 231 http://deb.debian.org/debian forky/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 232 http://deb.debian.org/debian forky/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 233 http://deb.debian.org/debian forky/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 234 http://deb.debian.org/debian forky/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get: 235 http://deb.debian.org/debian forky/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 236 http://deb.debian.org/debian forky/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 237 http://deb.debian.org/debian forky/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 238 http://deb.debian.org/debian forky/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 239 http://deb.debian.org/debian forky/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 240 http://deb.debian.org/debian forky/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 241 http://deb.debian.org/debian forky/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get: 242 http://deb.debian.org/debian forky/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 243 http://deb.debian.org/debian forky/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 244 http://deb.debian.org/debian forky/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 245 http://deb.debian.org/debian forky/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 246 http://deb.debian.org/debian forky/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 247 http://deb.debian.org/debian forky/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 248 http://deb.debian.org/debian forky/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 249 http://deb.debian.org/debian forky/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 250 http://deb.debian.org/debian forky/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get: 251 http://deb.debian.org/debian forky/main amd64 libio-socket-ssl-perl all 2.095-1 [226 kB] Get: 252 http://deb.debian.org/debian forky/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 253 http://deb.debian.org/debian forky/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 254 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 255 http://deb.debian.org/debian forky/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 256 http://deb.debian.org/debian forky/main amd64 libwww-perl all 6.78-1 [183 kB] Get: 257 http://deb.debian.org/debian forky/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get: 258 http://deb.debian.org/debian forky/main amd64 rsopv amd64 0.6.4-1 [1385 kB] Get: 259 http://deb.debian.org/debian forky/main amd64 wdiff amd64 1.2.2-9 [122 kB] Get: 260 http://deb.debian.org/debian forky/main amd64 devscripts all 2.25.19 [1047 kB] Get: 261 http://deb.debian.org/debian forky/main amd64 fastjar amd64 2:0.98-7 [80.1 kB] Get: 262 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get: 263 http://deb.debian.org/debian forky/main amd64 libgfortran-15-dev amd64 15.2.0-4 [886 kB] Get: 264 http://deb.debian.org/debian forky/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-4 [78.8 MB] Get: 265 http://deb.debian.org/debian forky/main amd64 gfortran-15 amd64 15.2.0-4 [17.9 kB] Get: 266 http://deb.debian.org/debian forky/main amd64 libnl-3-200 amd64 3.11.0-2 [67.1 kB] Get: 267 http://deb.debian.org/debian forky/main amd64 libnl-route-3-200 amd64 3.11.0-2 [211 kB] Get: 268 http://deb.debian.org/debian forky/main amd64 libibverbs1 amd64 56.1-1 [62.4 kB] Get: 269 http://deb.debian.org/debian forky/main amd64 ibverbs-providers amd64 56.1-1 [357 kB] Get: 270 http://deb.debian.org/debian forky/main amd64 jarwrapper all 0.81 [9784 B] Get: 271 http://deb.debian.org/debian forky/main amd64 javahelper all 0.81 [79.4 kB] Get: 272 http://deb.debian.org/debian forky/main amd64 libhamcrest-java all 2.2-2 [121 kB] Get: 273 http://deb.debian.org/debian forky/main amd64 junit4 all 4.13.2-5 [350 kB] Get: 274 http://deb.debian.org/debian forky/main amd64 libapiguardian-java all 1.1.2-1 [4656 B] Get: 275 http://deb.debian.org/debian forky/main amd64 libopentest4j-java all 1.2.0-4 [9516 B] Get: 276 http://deb.debian.org/debian forky/main amd64 libopentest4j-reporting-java all 0.1.0-M1-2 [49.0 kB] Get: 277 http://deb.debian.org/debian forky/main amd64 libpicocli-java all 4.6.2-2 [390 kB] Get: 278 http://deb.debian.org/debian forky/main amd64 libunivocity-parsers-java all 2.9.1-1 [397 kB] Get: 279 http://deb.debian.org/debian forky/main amd64 junit5 all 5.10.3-1 [2459 kB] Get: 280 http://deb.debian.org/debian forky/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 281 http://deb.debian.org/debian forky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 282 http://deb.debian.org/debian forky/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 283 http://deb.debian.org/debian forky/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 284 http://deb.debian.org/debian forky/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 285 http://deb.debian.org/debian forky/main amd64 libllvm17t64 amd64 1:17.0.6-22+b3 [23.6 MB] Get: 286 http://deb.debian.org/debian forky/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 287 http://deb.debian.org/debian forky/main amd64 libnuma1 amd64 2.0.19-1 [22.2 kB] Get: 288 http://deb.debian.org/debian forky/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get: 289 http://deb.debian.org/debian forky/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get: 290 http://deb.debian.org/debian forky/main amd64 libamdhip64-5 amd64 5.7.1-6 [8924 kB] Get: 291 http://deb.debian.org/debian forky/main amd64 libaopalliance-java all 20070526-7 [8572 B] Get: 292 http://deb.debian.org/debian forky/main amd64 libapache-pom-java all 33-2 [5852 B] Get: 293 http://deb.debian.org/debian forky/main amd64 libasm-java all 9.8-1 [392 kB] Get: 294 http://deb.debian.org/debian forky/main amd64 libatinject-jsr330-api-java all 1.0+ds1-6 [5112 B] Get: 295 http://deb.debian.org/debian forky/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 296 http://deb.debian.org/debian forky/main amd64 libbsh-java all 2.0b4-20 [291 kB] Get: 297 http://deb.debian.org/debian forky/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get: 298 http://deb.debian.org/debian forky/main amd64 libcommons-io-java all 2.19.0-1 [524 kB] Get: 299 http://deb.debian.org/debian forky/main amd64 libslf4j-java all 1.7.32-2 [142 kB] Get: 300 http://deb.debian.org/debian forky/main amd64 libmaven-shared-utils-java all 3.4.2-1 [137 kB] Get: 301 http://deb.debian.org/debian forky/main amd64 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get: 302 http://deb.debian.org/debian forky/main amd64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get: 303 http://deb.debian.org/debian forky/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get: 304 http://deb.debian.org/debian forky/main amd64 libjsr305-java all 0.1~+svn49-12 [26.6 kB] Get: 305 http://deb.debian.org/debian forky/main amd64 libguava-java all 32.0.1-1 [2708 kB] Get: 306 http://deb.debian.org/debian forky/main amd64 libguice-java all 5.1.0-1 [932 kB] Get: 307 http://deb.debian.org/debian forky/main amd64 libmaven-parent-java all 43-2 [6252 B] Get: 308 http://deb.debian.org/debian forky/main amd64 libcommons-lang3-java all 3.17.0-2 [641 kB] Get: 309 http://deb.debian.org/debian forky/main amd64 libplexus-utils2-java all 3.4.2-1 [258 kB] Get: 310 http://deb.debian.org/debian forky/main amd64 libwagon-provider-api-java all 3.5.3-2 [48.3 kB] Get: 311 http://deb.debian.org/debian forky/main amd64 libmaven-resolver-java all 1.9.22-1 [729 kB] Get: 312 http://deb.debian.org/debian forky/main amd64 libplexus-cipher-java all 2.0-1 [14.9 kB] Get: 313 http://deb.debian.org/debian forky/main amd64 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get: 314 http://deb.debian.org/debian forky/main amd64 libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get: 315 http://deb.debian.org/debian forky/main amd64 libplexus-interpolation-java all 1.27-1 [76.8 kB] Get: 316 http://deb.debian.org/debian forky/main amd64 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get: 317 http://deb.debian.org/debian forky/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-5 [8444 B] Get: 318 http://deb.debian.org/debian forky/main amd64 libcdi-api-java all 1.2-4 [55.3 kB] Get: 319 http://deb.debian.org/debian forky/main amd64 libsisu-inject-java all 0.3.5-1 [352 kB] Get: 320 http://deb.debian.org/debian forky/main amd64 libsisu-plexus-java all 0.3.5-1 [183 kB] Get: 321 http://deb.debian.org/debian forky/main amd64 libmaven3-core-java all 3.9.9-1 [1661 kB] Get: 322 http://deb.debian.org/debian forky/main amd64 libmaven-shared-io-java all 3.0.0-4 [33.2 kB] Get: 323 http://deb.debian.org/debian forky/main amd64 libmaven-file-management-java all 3.0.0-2 [35.1 kB] Get: 324 http://deb.debian.org/debian forky/main amd64 libbuild-helper-maven-plugin-java all 3.3.0-1 [59.5 kB] Get: 325 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 326 http://deb.debian.org/debian forky/main amd64 libcatch2-dev amd64 3.7.1-0.6 [646 kB] Get: 327 http://deb.debian.org/debian forky/main amd64 libcommons-collections3-java all 3.2.2-3 [530 kB] Get: 328 http://deb.debian.org/debian forky/main amd64 libcommons-logging-java all 1.3.0-2 [68.6 kB] Get: 329 http://deb.debian.org/debian forky/main amd64 libcommons-beanutils-java all 1.10.1-1.1 [231 kB] Get: 330 http://deb.debian.org/debian forky/main amd64 libcommons-codec-java all 1.18.0-1 [304 kB] Get: 331 http://deb.debian.org/debian forky/main amd64 libcommons-collections4-java all 4.4-2 [682 kB] Get: 332 http://deb.debian.org/debian forky/main amd64 libcommons-compress-java all 1.27.1-2 [641 kB] Get: 333 http://deb.debian.org/debian forky/main amd64 libcommons-digester-java all 1.8.1-7 [138 kB] Get: 334 http://deb.debian.org/debian forky/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get: 335 http://deb.debian.org/debian forky/main amd64 libcommons-lang-java all 2.6-11 [273 kB] Get: 336 http://deb.debian.org/debian forky/main amd64 libplexus-io-java all 3.3.1-2 [65.3 kB] Get: 337 http://deb.debian.org/debian forky/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.7 kB] Get: 338 http://deb.debian.org/debian forky/main amd64 libsnappy-jni amd64 1.1.10.8-1 [6548 B] Get: 339 http://deb.debian.org/debian forky/main amd64 libsnappy-java all 1.1.10.8-1 [87.8 kB] Get: 340 http://deb.debian.org/debian forky/main amd64 libxz-java all 1.9-1 [143 kB] Get: 341 http://deb.debian.org/debian forky/main amd64 libplexus-archiver-java all 4.6.1-1 [187 kB] Get: 342 http://deb.debian.org/debian forky/main amd64 libmaven-archiver-java all 3.6.2-1 [26.1 kB] Get: 343 http://deb.debian.org/debian forky/main amd64 libmaven-jar-plugin-java all 3.3.0-2 [24.0 kB] Get: 344 http://deb.debian.org/debian forky/main amd64 libcommons-text-java all 1.13.1-1 [228 kB] Get: 345 http://deb.debian.org/debian forky/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 346 http://deb.debian.org/debian forky/main amd64 libcommons-validator-java all 1:1.9.0-1 [191 kB] Get: 347 http://deb.debian.org/debian forky/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 348 http://deb.debian.org/debian forky/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 349 http://deb.debian.org/debian forky/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 350 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 351 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 352 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 353 http://deb.debian.org/debian forky/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 354 http://deb.debian.org/debian forky/main amd64 libnghttp3-dev amd64 1.11.0-1 [101 kB] Get: 355 http://deb.debian.org/debian forky/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 356 http://deb.debian.org/debian forky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 357 http://deb.debian.org/debian forky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 358 http://deb.debian.org/debian forky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 359 http://deb.debian.org/debian forky/main amd64 libunbound8 amd64 1.23.1-1 [606 kB] Get: 360 http://deb.debian.org/debian forky/main amd64 libgnutls-dane0t64 amd64 3.8.9-3 [455 kB] Get: 361 http://deb.debian.org/debian forky/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3 [455 kB] Get: 362 http://deb.debian.org/debian forky/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 363 http://deb.debian.org/debian forky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 364 http://deb.debian.org/debian forky/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 365 http://deb.debian.org/debian forky/main amd64 libgnutls28-dev amd64 3.8.9-3 [1406 kB] Get: 366 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 367 http://deb.debian.org/debian forky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 368 http://deb.debian.org/debian forky/main amd64 libssl-dev amd64 3.5.2-1 [2957 kB] Get: 369 http://deb.debian.org/debian forky/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 370 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-1.1 [389 kB] Get: 371 http://deb.debian.org/debian forky/main amd64 libcurl4-openssl-dev amd64 8.15.0-1 [511 kB] Get: 372 http://deb.debian.org/debian forky/main amd64 libcurlpp0t64 amd64 0.8.1-6 [28.3 kB] Get: 373 http://deb.debian.org/debian forky/main amd64 libcurlpp-dev amd64 0.8.1-6 [59.7 kB] Get: 374 http://deb.debian.org/debian forky/main amd64 libjaxen-java all 1.1.6-5 [214 kB] Get: 375 http://deb.debian.org/debian forky/main amd64 libdom4j-java all 2.1.4-1 [312 kB] Get: 376 http://deb.debian.org/debian forky/main amd64 libdoxia-core-java all 2.0.0-1 [149 kB] Get: 377 http://deb.debian.org/debian forky/main amd64 libplexus-xml-java all 3.0.1-2 [93.7 kB] Get: 378 http://deb.debian.org/debian forky/main amd64 libdoxia-java all 2.0.0-1 [113 kB] Get: 379 http://deb.debian.org/debian forky/main amd64 libmaven-reporting-api-java all 4.0.0-1 [6724 B] Get: 380 http://deb.debian.org/debian forky/main amd64 libxbean-reflect-java all 4.5-9 [132 kB] Get: 381 http://deb.debian.org/debian forky/main amd64 libplexus-container-default-java all 2.1.1-1 [193 kB] Get: 382 http://deb.debian.org/debian forky/main amd64 libplexus-i18n-java all 1.0-beta-10-6 [13.4 kB] Get: 383 http://deb.debian.org/debian forky/main amd64 velocity all 1.7-7 [431 kB] Get: 384 http://deb.debian.org/debian forky/main amd64 libplexus-velocity-java all 1.2-4 [9676 B] Get: 385 http://deb.debian.org/debian forky/main amd64 liboro-java all 2.0.8a-15 [69.3 kB] Get: 386 http://deb.debian.org/debian forky/main amd64 libvelocity-tools-java all 2.0-9 [311 kB] Get: 387 http://deb.debian.org/debian forky/main amd64 libdoxia-sitetools-java all 2.0.0-1 [176 kB] Get: 388 http://deb.debian.org/debian forky/main amd64 libel-api-java all 3.0.0-3 [64.9 kB] Get: 389 http://deb.debian.org/debian forky/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 390 http://deb.debian.org/debian forky/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB] Get: 391 http://deb.debian.org/debian forky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 392 http://deb.debian.org/debian forky/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB] Get: 393 http://deb.debian.org/debian forky/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB] Get: 394 http://deb.debian.org/debian forky/main amd64 libezmorph-java all 1.0.6-4 [75.9 kB] Get: 395 http://deb.debian.org/debian forky/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 396 http://deb.debian.org/debian forky/main amd64 librdmacm1t64 amd64 56.1-1 [70.4 kB] Get: 397 http://deb.debian.org/debian forky/main amd64 libfabric1 amd64 2.1.0-1.1 [706 kB] Get: 398 http://deb.debian.org/debian forky/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 399 http://deb.debian.org/debian forky/main amd64 libfmt-dev amd64 10.1.1+ds1-4 [177 kB] Get: 400 http://deb.debian.org/debian forky/main amd64 libgetopt-java all 1.0.14+dfsg-6 [25.7 kB] Get: 401 http://deb.debian.org/debian forky/main amd64 libgoogle-gson-java all 2.10.1-1 [262 kB] Get: 402 http://deb.debian.org/debian forky/main amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] Get: 403 http://deb.debian.org/debian forky/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get: 404 http://deb.debian.org/debian forky/main amd64 libxerces2-java all 2.12.2-1 [1440 kB] Get: 405 http://deb.debian.org/debian forky/main amd64 libxom-java all 1.3.9-1 [174 kB] Get: 406 http://deb.debian.org/debian forky/main amd64 libjson-java all 3.1.0+dfsg-2 [142 kB] Get: 407 http://deb.debian.org/debian forky/main amd64 libmbedcrypto16 amd64 3.6.4-2 [360 kB] Get: 408 http://deb.debian.org/debian forky/main amd64 libmbedx509-7 amd64 3.6.4-2 [151 kB] Get: 409 http://deb.debian.org/debian forky/main amd64 libmbedtls21 amd64 3.6.4-2 [242 kB] Get: 410 http://deb.debian.org/debian forky/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get: 411 http://deb.debian.org/debian forky/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get: 412 http://deb.debian.org/debian forky/main amd64 libncbi-ngs3 amd64 3.2.1+dfsg-5 [159 kB] Get: 413 http://deb.debian.org/debian forky/main amd64 libngs-jni amd64 3.2.1+dfsg-5 [27.8 kB] Get: 414 http://deb.debian.org/debian forky/main amd64 libngs-java amd64 3.2.1+dfsg-5 [114 kB] Get: 415 http://deb.debian.org/debian forky/main amd64 librhino-java all 1.7.15-1 [1382 kB] Get: 416 http://deb.debian.org/debian forky/main amd64 libhtsjdk-java all 4.1.3+dfsg-2 [1841 kB] Get: 417 http://deb.debian.org/debian forky/main amd64 libhttpcore-java all 4.4.16-1 [636 kB] Get: 418 http://deb.debian.org/debian forky/main amd64 libhttpclient-java all 4.5.14-1 [1247 kB] Get: 419 http://deb.debian.org/debian forky/main amd64 libhwloc15 amd64 2.12.2-1 [164 kB] Get: 420 http://deb.debian.org/debian forky/main amd64 libnuma-dev amd64 2.0.19-1 [36.5 kB] Get: 421 http://deb.debian.org/debian forky/main amd64 libltdl7 amd64 2.5.4-5 [416 kB] Get: 422 http://deb.debian.org/debian forky/main amd64 libltdl-dev amd64 2.5.4-5 [168 kB] Get: 423 http://deb.debian.org/debian forky/main amd64 libhwloc-dev amd64 2.12.2-1 [257 kB] Get: 424 http://deb.debian.org/debian forky/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get: 425 http://deb.debian.org/debian forky/main amd64 libze1 amd64 1.24.1-2 [514 kB] Get: 426 http://deb.debian.org/debian forky/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [42.9 kB] Get: 427 http://deb.debian.org/debian forky/main amd64 libhwloc-plugins amd64 2.12.2-1 [23.5 kB] Get: 428 http://deb.debian.org/debian forky/main amd64 libibumad3 amd64 56.1-1 [30.0 kB] Get: 429 http://deb.debian.org/debian forky/main amd64 libibmad5 amd64 56.1-1 [44.5 kB] Get: 430 http://deb.debian.org/debian forky/main amd64 libnl-3-dev amd64 3.11.0-2 [110 kB] Get: 431 http://deb.debian.org/debian forky/main amd64 libnl-route-3-dev amd64 3.11.0-2 [235 kB] Get: 432 http://deb.debian.org/debian forky/main amd64 libibverbs-dev amd64 56.1-1 [654 kB] Get: 433 http://deb.debian.org/debian forky/main amd64 libjansi-java all 2.4.1-2 [100 kB] Get: 434 http://deb.debian.org/debian forky/main amd64 libjcommander-java all 1.71-4 [73.0 kB] Get: 435 http://deb.debian.org/debian forky/main amd64 libjsp-api-java all 2.3.4-3 [53.7 kB] Get: 436 http://deb.debian.org/debian forky/main amd64 libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 437 http://deb.debian.org/debian forky/main amd64 libwebsocket-api-java all 1.1-2 [40.1 kB] Get: 438 http://deb.debian.org/debian forky/main amd64 libjetty9-java all 9.4.57-1.1 [2965 kB] Get: 439 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 440 http://deb.debian.org/debian forky/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 441 http://deb.debian.org/debian forky/main amd64 libjson-simple-java all 2.3.0-2 [61.7 kB] Get: 442 http://deb.debian.org/debian forky/main amd64 libjsoup-java all 1.15.3-1 [431 kB] Get: 443 http://deb.debian.org/debian forky/main amd64 libjtidy-java all 7+svn20110807-6 [251 kB] Get: 444 http://deb.debian.org/debian forky/main amd64 liblightcouch-java all 0.2.0-1 [75.0 kB] Get: 445 http://deb.debian.org/debian forky/main amd64 libmongodb-java all 3.6.3-2 [1901 kB] Get: 446 http://deb.debian.org/debian forky/main amd64 liblog4j2-java all 2.19.0-2 [2310 kB] Get: 447 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB] Get: 448 http://deb.debian.org/debian forky/main amd64 libmaven-antrun-plugin-java all 3.1.0-1 [36.9 kB] Get: 449 http://deb.debian.org/debian forky/main amd64 libmaven-clean-plugin-java all 3.2.0-2 [32.2 kB] Get: 450 http://deb.debian.org/debian forky/main amd64 libmaven-common-artifact-filters-java all 3.4.0-1 [47.7 kB] Get: 451 http://deb.debian.org/debian forky/main amd64 libmaven-shared-incremental-java all 1.1-6 [9916 B] Get: 452 http://deb.debian.org/debian forky/main amd64 libplexus-compiler-java all 2.13.0-1 [99.5 kB] Get: 453 http://deb.debian.org/debian forky/main amd64 libqdox2-java all 2.0.3-1 [296 kB] Get: 454 http://deb.debian.org/debian forky/main amd64 libplexus-languages-java all 1.1.1-3 [47.8 kB] Get: 455 http://deb.debian.org/debian forky/main amd64 libmaven-compiler-plugin-java all 3.13.0-1 [78.8 kB] Get: 456 http://deb.debian.org/debian forky/main amd64 libplexus-build-api-java all 0.0.7-4 [10.3 kB] Get: 457 http://deb.debian.org/debian forky/main amd64 libmaven-filtering-java all 3.4.0-1 [51.4 kB] Get: 458 http://deb.debian.org/debian forky/main amd64 libplexus-ant-factory-java all 1.0~alpha2.1-5 [11.7 kB] Get: 459 http://deb.debian.org/debian forky/main amd64 libplexus-container-default1.5-java all 2.1.1-1 [4476 B] Get: 460 http://deb.debian.org/debian forky/main amd64 libplexus-bsh-factory-java all 1.0~alpha7-5 [8360 B] Get: 461 http://deb.debian.org/debian forky/main amd64 libmaven-plugin-tools-java all 3.10.2-2 [245 kB] Get: 462 http://deb.debian.org/debian forky/main amd64 libmaven-reporting-exec-java all 2.0.0-1 [23.9 kB] Get: 463 http://deb.debian.org/debian forky/main amd64 libmaven-reporting-impl-java all 4.0.0-1 [17.6 kB] Get: 464 http://deb.debian.org/debian forky/main amd64 libmaven-resources-plugin-java all 3.3.1-1 [27.5 kB] Get: 465 http://deb.debian.org/debian forky/main amd64 libmaven-site-plugin-java all 3.21.0-1 [106 kB] Get: 466 http://deb.debian.org/debian forky/main amd64 libmuparserx4.0.12 amd64 4.0.12-2 [198 kB] Get: 467 http://deb.debian.org/debian forky/main amd64 libmuparserx-dev amd64 4.0.12-2 [38.5 kB] Get: 468 http://deb.debian.org/debian forky/main amd64 libucx0 amd64 1.19.0+ds-1 [1336 kB] Get: 469 http://deb.debian.org/debian forky/main amd64 libopenmpi40 amd64 5.0.8-9 [3258 kB] Get: 470 http://deb.debian.org/debian forky/main amd64 openmpi-common all 5.0.8-9 [107 kB] Get: 471 http://deb.debian.org/debian forky/main amd64 openmpi-bin amd64 5.0.8-9 [203 kB] Get: 472 http://deb.debian.org/debian forky/main amd64 libopenmpi-dev amd64 5.0.8-9 [1228 kB] Get: 473 http://deb.debian.org/debian forky/main amd64 libprotobuf32t64 amd64 3.21.12-11 [983 kB] Get: 474 http://deb.debian.org/debian forky/main amd64 libprotobuf-lite32t64 amd64 3.21.12-11 [274 kB] Get: 475 http://deb.debian.org/debian forky/main amd64 libprotobuf-dev amd64 3.21.12-11 [1328 kB] Get: 476 http://deb.debian.org/debian forky/main amd64 libprotobuf-java all 3.21.12-11 [1267 kB] Get: 477 http://deb.debian.org/debian forky/main amd64 libprotoc32t64 amd64 3.21.12-11 [922 kB] Get: 478 http://deb.debian.org/debian forky/main amd64 libspdlog1.15 amd64 1:1.15.3+ds-1 [109 kB] Get: 479 http://deb.debian.org/debian forky/main amd64 libspdlog-dev amd64 1:1.15.3+ds-1 [91.9 kB] Get: 480 http://deb.debian.org/debian forky/main amd64 libsurefire-java all 2.22.3-4 [1391 kB] Get: 481 http://deb.debian.org/debian forky/main amd64 libwagon-file-java all 3.5.3-2 [8452 B] Get: 482 http://deb.debian.org/debian forky/main amd64 libwagon-http-java all 3.5.3-2 [49.6 kB] Get: 483 http://deb.debian.org/debian forky/main amd64 libxml2-utils amd64 2.14.5+dfsg-0.2 [123 kB] Get: 484 http://deb.debian.org/debian forky/main amd64 maven all 3.9.9-1 [19.7 kB] Get: 485 http://deb.debian.org/debian forky/main amd64 maven-repo-helper all 1.12 [136 kB] Get: 486 http://deb.debian.org/debian forky/main amd64 unzip amd64 6.0-29 [173 kB] Get: 487 http://deb.debian.org/debian forky/main amd64 maven-debian-helper all 2.6.9 [104 kB] Get: 488 http://deb.debian.org/debian forky/main amd64 mpi-default-dev amd64 1.18 [3372 B] Get: 489 http://deb.debian.org/debian forky/main amd64 protobuf-compiler amd64 3.21.12-11 [84.7 kB] Get: 490 http://deb.debian.org/debian forky/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.4 [98.1 kB] Get: 491 http://deb.debian.org/debian forky/main amd64 testng all 6.9.12-4 [795 kB] Get: 492 http://deb.debian.org/debian forky/main amd64 uuid-dev amd64 2.41.1-3 [50.4 kB] Fetched 457 MB in 16s (27.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libsystemd-shared_258~rc4-1_amd64.deb ... Unpacking libsystemd-shared:amd64 (258~rc4-1) ... Setting up libsystemd-shared:amd64 (258~rc4-1) ... Selecting previously unselected package systemd. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19925 files and directories currently installed.) Preparing to unpack .../systemd_258~rc4-1_amd64.deb ... Unpacking systemd (258~rc4-1) ... Setting up systemd (258~rc4-1) ... Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' -> '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' -> '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' -> '/usr/lib/systemd/system/systemd-pstore.service'. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20923 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_258~rc4-1_amd64.deb ... Unpacking systemd-sysv (258~rc4-1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../01-libdbus-1-3_1.16.2-2_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.16.2-2) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../02-dbus-bin_1.16.2-2_amd64.deb ... Unpacking dbus-bin (1.16.2-2) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../03-dbus-session-bus-common_1.16.2-2_all.deb ... Unpacking dbus-session-bus-common (1.16.2-2) ... Selecting previously unselected package libapparmor1:amd64. Preparing to unpack .../04-libapparmor1_4.1.0-1_amd64.deb ... Unpacking libapparmor1:amd64 (4.1.0-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../05-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../06-dbus-daemon_1.16.2-2_amd64.deb ... Unpacking dbus-daemon (1.16.2-2) ... Selecting previously unselected package dbus-system-bus-common. Preparing to unpack .../07-dbus-system-bus-common_1.16.2-2_all.deb ... Unpacking dbus-system-bus-common (1.16.2-2) ... Selecting previously unselected package dbus. Preparing to unpack .../08-dbus_1.16.2-2_amd64.deb ... Unpacking dbus (1.16.2-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../10-binfmt-support_2.2.2-7_amd64.deb ... Unpacking binfmt-support (2.2.2-7) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../11-libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../12-python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21373 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22388 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.5.2-1_amd64.deb ... Unpacking openssl (3.5.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../007-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../010-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package libpam-systemd:amd64. Preparing to unpack .../012-libpam-systemd_258~rc4-1_amd64.deb ... Unpacking libpam-systemd:amd64 (258~rc4-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package man-db. Preparing to unpack .../014-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../015-libedit2_3.1-20250104-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20250104-1) ... Selecting previously unselected package libcbor0.10:amd64. Preparing to unpack .../016-libcbor0.10_0.10.2-2_amd64.deb ... Unpacking libcbor0.10:amd64 (0.10.2-2) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../017-libfido2-1_1.16.0-2_amd64.deb ... Unpacking libfido2-1:amd64 (1.16.0-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../018-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../019-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../020-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../021-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../022-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../023-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package openssh-client. Preparing to unpack .../024-openssh-client_1%3a10.0p1-8_amd64.deb ... Unpacking openssh-client (1:10.0p1-8) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../025-libgdk-pixbuf2.0-common_2.42.12+dfsg-5_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-5) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../026-libglib2.0-0t64_2.84.4-3_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.84.4-3) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../027-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../028-shared-mime-info_2.4-5+b3_amd64.deb ... Unpacking shared-mime-info (2.4-5+b3) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../029-libjpeg62-turbo_1%3a2.1.5-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-4) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../030-libpng16-16t64_1.6.50-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.50-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../031-libdeflate0_1.23-2_amd64.deb ... Unpacking libdeflate0:amd64 (1.23-2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../032-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../033-liblerc4_4.0.0+ds-5_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-5) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../034-libsharpyuv0_1.5.0-0.1_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../035-libwebp7_1.5.0-0.1_amd64.deb ... Unpacking libwebp7:amd64 (1.5.0-0.1) ... Selecting previously unselected package libtiff6:amd64. Preparing to unpack .../036-libtiff6_4.7.0-5_amd64.deb ... Unpacking libtiff6:amd64 (4.7.0-5) ... Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64. Preparing to unpack .../037-libgdk-pixbuf-2.0-0_2.42.12+dfsg-5_amd64.deb ... Unpacking libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-5) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../038-gtk-update-icon-cache_4.20.1+ds-2_amd64.deb ... No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. Unpacking gtk-update-icon-cache (4.20.1+ds-2) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../039-hicolor-icon-theme_0.18-2_all.deb ... Unpacking hicolor-icon-theme (0.18-2) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../040-adwaita-icon-theme_49~rc-1_all.deb ... Unpacking adwaita-icon-theme (49~rc-1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../041-ca-certificates-java_20240118_all.deb ... Unpacking ca-certificates-java (20240118) ... Selecting previously unselected package java-common. Preparing to unpack .../042-java-common_0.76_all.deb ... Unpacking java-common (0.76) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../043-liblcms2-2_2.16-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.16-2) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../044-libnspr4_2%3a4.36-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.36-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../045-libnss3_2%3a3.114-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.114-1) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../046-libpcsclite1_2.3.3-1_amd64.deb ... Unpacking libpcsclite1:amd64 (2.3.3-1) ... Selecting previously unselected package openjdk-21-jre-headless:amd64. Preparing to unpack .../047-openjdk-21-jre-headless_21.0.9~5ea-1_amd64.deb ... Unpacking openjdk-21-jre-headless:amd64 (21.0.9~5ea-1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../048-default-jre-headless_2%3a1.21-76_amd64.deb ... Unpacking default-jre-headless (2:1.21-76) ... Selecting previously unselected package ant. Preparing to unpack .../049-ant_1.10.15-1_all.deb ... Unpacking ant (1.10.15-1) ... Selecting previously unselected package at-spi2-common. Preparing to unpack .../050-at-spi2-common_2.58.0-1_all.deb ... Unpacking at-spi2-common (2.58.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../051-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../052-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../053-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../054-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../055-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package chrpath. Preparing to unpack .../056-chrpath_0.18-1_amd64.deb ... Unpacking chrpath (0.18-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../057-cmake-data_4.1.1+really3.31.6-1_all.deb ... Unpacking cmake-data (4.1.1+really3.31.6-1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../058-libarchive13t64_3.7.4-4+b1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-4+b1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../059-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../060-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../061-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../062-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../063-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../064-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../065-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../066-libnghttp3-9_1.11.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.11.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../067-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../068-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../069-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../070-libgnutls30t64_3.8.9-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../071-librtmp1_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../072-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../073-libcurl4t64_8.15.0-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.15.0-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../074-libjsoncpp26_1.9.6-4_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-4) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../075-librhash1_1.4.6-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.6-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../076-libuv1t64_1.51.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.51.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../077-cmake_4.1.1+really3.31.6-1_amd64.deb ... Unpacking cmake (4.1.1+really3.31.6-1) ... Selecting previously unselected package comerr-dev:amd64. Preparing to unpack .../078-comerr-dev_2.1-1.47.2-3+b3_amd64.deb ... Unpacking comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Selecting previously unselected package dbus-user-session. Preparing to unpack .../079-dbus-user-session_1.16.2-2_amd64.deb ... Unpacking dbus-user-session (1.16.2-2) ... Selecting previously unselected package libdconf1:amd64. Preparing to unpack .../080-libdconf1_0.40.0-5_amd64.deb ... Unpacking libdconf1:amd64 (0.40.0-5) ... Selecting previously unselected package dconf-service. Preparing to unpack .../081-dconf-service_0.40.0-5_amd64.deb ... Unpacking dconf-service (0.40.0-5) ... Selecting previously unselected package dconf-gsettings-backend:amd64. Preparing to unpack .../082-dconf-gsettings-backend_0.40.0-5_amd64.deb ... Unpacking dconf-gsettings-backend:amd64 (0.40.0-5) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../083-dctrl-tools_2.24-3+b1_amd64.deb ... Unpacking dctrl-tools (2.24-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../084-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../085-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../086-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../087-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../088-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../089-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../090-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../091-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package gettext. Preparing to unpack .../092-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../093-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../094-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../095-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package libatk1.0-0t64:amd64. Preparing to unpack .../096-libatk1.0-0t64_2.58.0-1_amd64.deb ... Unpacking libatk1.0-0t64:amd64 (2.58.0-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../097-libxau6_1%3a1.0.11-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../098-libxdmcp6_1%3a1.1.5-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../099-libxcb1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../100-libx11-data_2%3a1.8.12-1_all.deb ... Unpacking libx11-data (2:1.8.12-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../101-libx11-6_2%3a1.8.12-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.12-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../102-libxext6_2%3a1.3.4-1+b3_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b3) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../103-libxi6_2%3a1.8.2-1_amd64.deb ... Unpacking libxi6:amd64 (2:1.8.2-1) ... Selecting previously unselected package libatspi2.0-0t64:amd64. Preparing to unpack .../104-libatspi2.0-0t64_2.58.0-1_amd64.deb ... Unpacking libatspi2.0-0t64:amd64 (2.58.0-1) ... Selecting previously unselected package libatk-bridge2.0-0t64:amd64. Preparing to unpack .../105-libatk-bridge2.0-0t64_2.58.0-1_amd64.deb ... Unpacking libatk-bridge2.0-0t64:amd64 (2.58.0-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../106-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../107-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../108-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../109-fontconfig-config_2.15.0-2.4_amd64.deb ... Unpacking fontconfig-config (2.15.0-2.4) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../110-libfontconfig1_2.15.0-2.4_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-2.4) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../111-libpixman-1-0_0.44.0-3_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.44.0-3) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../112-libxcb-render0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../113-libxcb-shm0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../114-libxrender1_1%3a0.9.12-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.12-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../115-libcairo2_1.18.4-1+b1_amd64.deb ... Unpacking libcairo2:amd64 (1.18.4-1+b1) ... Selecting previously unselected package libcairo-gobject2:amd64. Preparing to unpack .../116-libcairo-gobject2_1.18.4-1+b1_amd64.deb ... Unpacking libcairo-gobject2:amd64 (1.18.4-1+b1) ... Selecting previously unselected package libcloudproviders0:amd64. Preparing to unpack .../117-libcloudproviders0_0.3.6-2_amd64.deb ... Unpacking libcloudproviders0:amd64 (0.3.6-2) ... Selecting previously unselected package libcolord2:amd64. Preparing to unpack .../118-libcolord2_1.4.8-1_amd64.deb ... Unpacking libcolord2:amd64 (1.4.8-1) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../119-libavahi-common-data_0.8-17_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.8-17) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../120-libavahi-common3_0.8-17_amd64.deb ... Unpacking libavahi-common3:amd64 (0.8-17) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../121-libavahi-client3_0.8-17_amd64.deb ... Unpacking libavahi-client3:amd64 (0.8-17) ... Selecting previously unselected package libcups2t64:amd64. Preparing to unpack .../122-libcups2t64_2.4.10-4_amd64.deb ... Unpacking libcups2t64:amd64 (2.4.10-4) ... Selecting previously unselected package libepoxy0:amd64. Preparing to unpack .../123-libepoxy0_1.5.10-2_amd64.deb ... Unpacking libepoxy0:amd64 (1.5.10-2) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../124-libfribidi0_1.0.16-1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.16-1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../125-libgraphite2-3_1.3.14-3_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-3) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../126-libharfbuzz0b_11.4.5-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (11.4.5-1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../127-fontconfig_2.15.0-2.4_amd64.deb ... Unpacking fontconfig (2.15.0-2.4) ... Selecting previously unselected package libthai-data. Preparing to unpack .../128-libthai-data_0.1.29-2_all.deb ... Unpacking libthai-data (0.1.29-2) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../129-libdatrie1_0.2.13-4_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.13-4) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../130-libthai0_0.1.29-2+b1_amd64.deb ... Unpacking libthai0:amd64 (0.1.29-2+b1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../131-libpango-1.0-0_1.56.3-2_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.56.3-2) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../132-libpangoft2-1.0-0_1.56.3-2_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.56.3-2) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../133-libpangocairo-1.0-0_1.56.3-2_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.56.3-2) ... Selecting previously unselected package libwayland-client0:amd64. Preparing to unpack .../134-libwayland-client0_1.24.0-2+b1_amd64.deb ... Unpacking libwayland-client0:amd64 (1.24.0-2+b1) ... Selecting previously unselected package libwayland-cursor0:amd64. Preparing to unpack .../135-libwayland-cursor0_1.24.0-2+b1_amd64.deb ... Unpacking libwayland-cursor0:amd64 (1.24.0-2+b1) ... Selecting previously unselected package libwayland-egl1:amd64. Preparing to unpack .../136-libwayland-egl1_1.24.0-2+b1_amd64.deb ... Unpacking libwayland-egl1:amd64 (1.24.0-2+b1) ... Selecting previously unselected package libxcomposite1:amd64. Preparing to unpack .../137-libxcomposite1_1%3a0.4.6-1_amd64.deb ... Unpacking libxcomposite1:amd64 (1:0.4.6-1) ... Selecting previously unselected package libxfixes3:amd64. Preparing to unpack .../138-libxfixes3_1%3a6.0.0-2+b4_amd64.deb ... Unpacking libxfixes3:amd64 (1:6.0.0-2+b4) ... Selecting previously unselected package libxcursor1:amd64. Preparing to unpack .../139-libxcursor1_1%3a1.2.3-1_amd64.deb ... Unpacking libxcursor1:amd64 (1:1.2.3-1) ... Selecting previously unselected package libxdamage1:amd64. Preparing to unpack .../140-libxdamage1_1%3a1.1.6-1+b2_amd64.deb ... Unpacking libxdamage1:amd64 (1:1.1.6-1+b2) ... Selecting previously unselected package libxinerama1:amd64. Preparing to unpack .../141-libxinerama1_2%3a1.1.4-3+b4_amd64.deb ... Unpacking libxinerama1:amd64 (2:1.1.4-3+b4) ... Selecting previously unselected package xkb-data. Preparing to unpack .../142-xkb-data_2.42-1_all.deb ... Unpacking xkb-data (2.42-1) ... Selecting previously unselected package libxkbcommon0:amd64. Preparing to unpack .../143-libxkbcommon0_1.7.0-2.1_amd64.deb ... Unpacking libxkbcommon0:amd64 (1.7.0-2.1) ... Selecting previously unselected package libxrandr2:amd64. Preparing to unpack .../144-libxrandr2_2%3a1.5.4-1+b3_amd64.deb ... Unpacking libxrandr2:amd64 (2:1.5.4-1+b3) ... Selecting previously unselected package libgtk-3-common. Preparing to unpack .../145-libgtk-3-common_3.24.50-2_all.deb ... Unpacking libgtk-3-common (3.24.50-2) ... Selecting previously unselected package libgtk-3-0t64:amd64. Preparing to unpack .../146-libgtk-3-0t64_3.24.50-2_amd64.deb ... Unpacking libgtk-3-0t64:amd64 (3.24.50-2) ... Selecting previously unselected package libglvnd0:amd64. Preparing to unpack .../147-libglvnd0_1.7.0-1+b2_amd64.deb ... Unpacking libglvnd0:amd64 (1.7.0-1+b2) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../148-libdrm-common_2.4.125-2_all.deb ... Unpacking libdrm-common (2.4.125-2) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../149-libdrm2_2.4.125-2_amd64.deb ... Unpacking libdrm2:amd64 (2.4.125-2) ... Selecting previously unselected package libx11-xcb1:amd64. Preparing to unpack .../150-libx11-xcb1_2%3a1.8.12-1_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.8.12-1) ... Selecting previously unselected package libxcb-dri3-0:amd64. Preparing to unpack .../151-libxcb-dri3-0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-glx0:amd64. Preparing to unpack .../152-libxcb-glx0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-glx0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-present0:amd64. Preparing to unpack .../153-libxcb-present0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-present0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-xfixes0:amd64. Preparing to unpack .../154-libxcb-xfixes0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-xfixes0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxxf86vm1:amd64. Preparing to unpack .../155-libxxf86vm1_1%3a1.1.4-1+b4_amd64.deb ... Unpacking libxxf86vm1:amd64 (1:1.1.4-1+b4) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../156-libdrm-amdgpu1_2.4.125-2_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.125-2) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../157-libpciaccess0_0.17-3+b3_amd64.deb ... Unpacking libpciaccess0:amd64 (0.17-3+b3) ... Selecting previously unselected package libdrm-intel1:amd64. Preparing to unpack .../158-libdrm-intel1_2.4.125-2_amd64.deb ... Unpacking libdrm-intel1:amd64 (2.4.125-2) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../159-libz3-4_4.13.3-1_amd64.deb ... Unpacking libz3-4:amd64 (4.13.3-1) ... Selecting previously unselected package libllvm19:amd64. Preparing to unpack .../160-libllvm19_1%3a19.1.7-3+b2_amd64.deb ... Unpacking libllvm19:amd64 (1:19.1.7-3+b2) ... Selecting previously unselected package libsensors-config. Preparing to unpack .../161-libsensors-config_1%3a3.6.2-2_all.deb ... Unpacking libsensors-config (1:3.6.2-2) ... Selecting previously unselected package libsensors5:amd64. Preparing to unpack .../162-libsensors5_1%3a3.6.2-2_amd64.deb ... Unpacking libsensors5:amd64 (1:3.6.2-2) ... Selecting previously unselected package libxcb-randr0:amd64. Preparing to unpack .../163-libxcb-randr0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-randr0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-sync1:amd64. Preparing to unpack .../164-libxcb-sync1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-sync1:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxshmfence1:amd64. Preparing to unpack .../165-libxshmfence1_1.3.3-1_amd64.deb ... Unpacking libxshmfence1:amd64 (1.3.3-1) ... Selecting previously unselected package mesa-libgallium:amd64. Preparing to unpack .../166-mesa-libgallium_25.2.2-1_amd64.deb ... Unpacking mesa-libgallium:amd64 (25.2.2-1) ... Selecting previously unselected package libgbm1:amd64. Preparing to unpack .../167-libgbm1_25.2.2-1_amd64.deb ... Unpacking libgbm1:amd64 (25.2.2-1) ... Selecting previously unselected package libvulkan1:amd64. Preparing to unpack .../168-libvulkan1_1.4.321.0-1_amd64.deb ... Unpacking libvulkan1:amd64 (1.4.321.0-1) ... Selecting previously unselected package libgl1-mesa-dri:amd64. Preparing to unpack .../169-libgl1-mesa-dri_25.2.2-1_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (25.2.2-1) ... Selecting previously unselected package libglx-mesa0:amd64. Preparing to unpack .../170-libglx-mesa0_25.2.2-1_amd64.deb ... Unpacking libglx-mesa0:amd64 (25.2.2-1) ... Selecting previously unselected package libglx0:amd64. Preparing to unpack .../171-libglx0_1.7.0-1+b2_amd64.deb ... Unpacking libglx0:amd64 (1.7.0-1+b2) ... Selecting previously unselected package libgl1:amd64. Preparing to unpack .../172-libgl1_1.7.0-1+b2_amd64.deb ... Unpacking libgl1:amd64 (1.7.0-1+b2) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../173-libasound2-data_1.2.14-2_all.deb ... Unpacking libasound2-data (1.2.14-2) ... Selecting previously unselected package libasound2t64:amd64. Preparing to unpack .../174-libasound2t64_1.2.14-2_amd64.deb ... Unpacking libasound2t64:amd64 (1.2.14-2) ... Selecting previously unselected package libgif7:amd64. Preparing to unpack .../175-libgif7_5.2.2-1+b1_amd64.deb ... Unpacking libgif7:amd64 (5.2.2-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../176-x11-common_1%3a7.7+25_all.deb ... Unpacking x11-common (1:7.7+25) ... Selecting previously unselected package libxtst6:amd64. Preparing to unpack .../177-libxtst6_2%3a1.2.5-1_amd64.deb ... Unpacking libxtst6:amd64 (2:1.2.5-1) ... Selecting previously unselected package openjdk-21-jre:amd64. Preparing to unpack .../178-openjdk-21-jre_21.0.9~5ea-1_amd64.deb ... Unpacking openjdk-21-jre:amd64 (21.0.9~5ea-1) ... Selecting previously unselected package default-jre. Preparing to unpack .../179-default-jre_2%3a1.21-76_amd64.deb ... Unpacking default-jre (2:1.21-76) ... Selecting previously unselected package openjdk-21-jdk-headless:amd64. Preparing to unpack .../180-openjdk-21-jdk-headless_21.0.9~5ea-1_amd64.deb ... Unpacking openjdk-21-jdk-headless:amd64 (21.0.9~5ea-1) ... Selecting previously unselected package default-jdk-headless. Preparing to unpack .../181-default-jdk-headless_2%3a1.21-76_amd64.deb ... Unpacking default-jdk-headless (2:1.21-76) ... Selecting previously unselected package openjdk-21-jdk:amd64. Preparing to unpack .../182-openjdk-21-jdk_21.0.9~5ea-1_amd64.deb ... Unpacking openjdk-21-jdk:amd64 (21.0.9~5ea-1) ... Selecting previously unselected package default-jdk. Preparing to unpack .../183-default-jdk_2%3a1.21-76_amd64.deb ... Unpacking default-jdk (2:1.21-76) ... Selecting previously unselected package libgpg-error0:amd64. Preparing to unpack .../184-libgpg-error0_1.55-2_amd64.deb ... Unpacking libgpg-error0:amd64 (1.55-2) ... Selecting previously unselected package libassuan9:amd64. Preparing to unpack .../185-libassuan9_3.0.2-2_amd64.deb ... Unpacking libassuan9:amd64 (3.0.2-2) ... Selecting previously unselected package libgcrypt20:amd64. Preparing to unpack .../186-libgcrypt20_1.11.2-2_amd64.deb ... Unpacking libgcrypt20:amd64 (1.11.2-2) ... Selecting previously unselected package gpgconf. Preparing to unpack .../187-gpgconf_2.4.8-3_amd64.deb ... Unpacking gpgconf (2.4.8-3) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../188-libksba8_1.6.7-2+b1_amd64.deb ... Unpacking libksba8:amd64 (1.6.7-2+b1) ... Selecting previously unselected package libnpth0t64:amd64. Preparing to unpack .../189-libnpth0t64_1.8-3_amd64.deb ... Unpacking libnpth0t64:amd64 (1.8-3) ... Selecting previously unselected package gpg. Preparing to unpack .../190-gpg_2.4.8-3_amd64.deb ... Unpacking gpg (2.4.8-3) ... Selecting previously unselected package pinentry-curses. Preparing to unpack .../191-pinentry-curses_1.3.2-3_amd64.deb ... Unpacking pinentry-curses (1.3.2-3) ... Selecting previously unselected package gpg-agent. Preparing to unpack .../192-gpg-agent_2.4.8-3_amd64.deb ... Unpacking gpg-agent (2.4.8-3) ... Selecting previously unselected package libfile-dirlist-perl. Preparing to unpack .../193-libfile-dirlist-perl_0.05-3_all.deb ... Unpacking libfile-dirlist-perl (0.05-3) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../194-libfile-which-perl_1.27-2_all.deb ... Unpacking libfile-which-perl (1.27-2) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../195-libfile-homedir-perl_1.006-2_all.deb ... Unpacking libfile-homedir-perl (1.006-2) ... Selecting previously unselected package libfile-touch-perl. Preparing to unpack .../196-libfile-touch-perl_0.12-2_all.deb ... Unpacking libfile-touch-perl (0.12-2) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../197-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../198-libclass-method-modifiers-perl_2.15-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.15-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../199-libclass-xsaccessor-perl_1.19-4+b5_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b5) ... Selecting previously unselected package libb-hooks-op-check-perl:amd64. Preparing to unpack .../200-libb-hooks-op-check-perl_0.22-3+b2_amd64.deb ... Unpacking libb-hooks-op-check-perl:amd64 (0.22-3+b2) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../201-libdynaloader-functions-perl_0.004-2_all.deb ... Unpacking libdynaloader-functions-perl (0.004-2) ... Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../202-libdevel-callchecker-perl_0.009-2_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.009-2) ... Selecting previously unselected package libparams-classify-perl:amd64. Preparing to unpack .../203-libparams-classify-perl_0.015-2+b4_amd64.deb ... Unpacking libparams-classify-perl:amd64 (0.015-2+b4) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../204-libmodule-runtime-perl_0.018-1_all.deb ... Unpacking libmodule-runtime-perl (0.018-1) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../205-libimport-into-perl_1.002005-2_all.deb ... Unpacking libimport-into-perl (1.002005-2) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../206-librole-tiny-perl_2.002004-1_all.deb ... Unpacking librole-tiny-perl (2.002004-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../207-libsub-quote-perl_2.006008-1_all.deb ... Unpacking libsub-quote-perl (2.006008-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../208-libmoo-perl_2.005005-1_all.deb ... Unpacking libmoo-perl (2.005005-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../209-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../210-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../211-libhttp-date-perl_6.06-1_all.deb ... Unpacking libhttp-date-perl (6.06-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../212-libfile-listing-perl_6.16-1_all.deb ... Unpacking libfile-listing-perl (6.16-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../213-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../214-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../215-libhtml-parser-perl_3.83-1+b2_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.83-1+b2) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../216-libhtml-tree-perl_5.07-3_all.deb ... Unpacking libhtml-tree-perl (5.07-3) ... Selecting previously unselected package libclone-perl:amd64. Preparing to unpack .../217-libclone-perl_0.47-1+b1_amd64.deb ... Unpacking libclone-perl:amd64 (0.47-1+b1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../218-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../219-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../220-libhttp-message-perl_7.00-2_all.deb ... Unpacking libhttp-message-perl (7.00-2) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../221-libhttp-cookies-perl_6.11-1_all.deb ... Unpacking libhttp-cookies-perl (6.11-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../222-libhttp-negotiate-perl_6.01-2_all.deb ... Unpacking libhttp-negotiate-perl (6.01-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../223-perl-openssl-defaults_7+b2_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (7+b2) ... Selecting previously unselected package libnet-ssleay-perl:amd64. Preparing to unpack .../224-libnet-ssleay-perl_1.94-3_amd64.deb ... Unpacking libnet-ssleay-perl:amd64 (1.94-3) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../225-libio-socket-ssl-perl_2.095-1_all.deb ... Unpacking libio-socket-ssl-perl (2.095-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../226-libnet-http-perl_6.23-1_all.deb ... Unpacking libnet-http-perl (6.23-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../227-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../228-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../229-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../230-libwww-perl_6.78-1_all.deb ... Unpacking libwww-perl (6.78-1) ... Selecting previously unselected package patchutils. Preparing to unpack .../231-patchutils_0.4.2-1_amd64.deb ... Unpacking patchutils (0.4.2-1) ... Selecting previously unselected package rsopv. Preparing to unpack .../232-rsopv_0.6.4-1_amd64.deb ... Unpacking rsopv (0.6.4-1) ... Selecting previously unselected package wdiff. Preparing to unpack .../233-wdiff_1.2.2-9_amd64.deb ... Unpacking wdiff (1.2.2-9) ... Selecting previously unselected package devscripts. Preparing to unpack .../234-devscripts_2.25.19_all.deb ... Unpacking devscripts (2.25.19) ... Selecting previously unselected package fastjar. Preparing to unpack .../235-fastjar_2%3a0.98-7_amd64.deb ... Unpacking fastjar (2:0.98-7) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../236-libgfortran5_15.2.0-4_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-4) ... Selecting previously unselected package libgfortran-15-dev:amd64. Preparing to unpack .../237-libgfortran-15-dev_15.2.0-4_amd64.deb ... Unpacking libgfortran-15-dev:amd64 (15.2.0-4) ... Selecting previously unselected package gfortran-15-x86-64-linux-gnu. Preparing to unpack .../238-gfortran-15-x86-64-linux-gnu_15.2.0-4_amd64.deb ... Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-4) ... Selecting previously unselected package gfortran-15. Preparing to unpack .../239-gfortran-15_15.2.0-4_amd64.deb ... Unpacking gfortran-15 (15.2.0-4) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../240-libnl-3-200_3.11.0-2_amd64.deb ... Unpacking libnl-3-200:amd64 (3.11.0-2) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../241-libnl-route-3-200_3.11.0-2_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.11.0-2) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../242-libibverbs1_56.1-1_amd64.deb ... Unpacking libibverbs1:amd64 (56.1-1) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../243-ibverbs-providers_56.1-1_amd64.deb ... Unpacking ibverbs-providers:amd64 (56.1-1) ... Selecting previously unselected package jarwrapper. Preparing to unpack .../244-jarwrapper_0.81_all.deb ... Unpacking jarwrapper (0.81) ... Selecting previously unselected package javahelper. Preparing to unpack .../245-javahelper_0.81_all.deb ... Unpacking javahelper (0.81) ... Selecting previously unselected package libhamcrest-java. Preparing to unpack .../246-libhamcrest-java_2.2-2_all.deb ... Unpacking libhamcrest-java (2.2-2) ... Selecting previously unselected package junit4. Preparing to unpack .../247-junit4_4.13.2-5_all.deb ... Unpacking junit4 (4.13.2-5) ... Selecting previously unselected package libapiguardian-java. Preparing to unpack .../248-libapiguardian-java_1.1.2-1_all.deb ... Unpacking libapiguardian-java (1.1.2-1) ... Selecting previously unselected package libopentest4j-java. Preparing to unpack .../249-libopentest4j-java_1.2.0-4_all.deb ... Unpacking libopentest4j-java (1.2.0-4) ... Selecting previously unselected package libopentest4j-reporting-java. Preparing to unpack .../250-libopentest4j-reporting-java_0.1.0-M1-2_all.deb ... Unpacking libopentest4j-reporting-java (0.1.0-M1-2) ... Selecting previously unselected package libpicocli-java. Preparing to unpack .../251-libpicocli-java_4.6.2-2_all.deb ... Unpacking libpicocli-java (4.6.2-2) ... Selecting previously unselected package libunivocity-parsers-java. Preparing to unpack .../252-libunivocity-parsers-java_2.9.1-1_all.deb ... Unpacking libunivocity-parsers-java (2.9.1-1) ... Selecting previously unselected package junit5. Preparing to unpack .../253-junit5_5.10.3-1_all.deb ... Unpacking junit5 (5.10.3-1) ... Selecting previously unselected package libgssrpc4t64:amd64. Preparing to unpack .../254-libgssrpc4t64_1.21.3-5_amd64.deb ... Unpacking libgssrpc4t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:amd64. Preparing to unpack .../255-libkadm5clnt-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5clnt-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:amd64. Preparing to unpack .../256-libkdb5-10t64_1.21.3-5_amd64.deb ... Unpacking libkdb5-10t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:amd64. Preparing to unpack .../257-libkadm5srv-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5srv-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:amd64. Preparing to unpack .../258-krb5-multidev_1.21.3-5_amd64.deb ... Unpacking krb5-multidev:amd64 (1.21.3-5) ... Selecting previously unselected package libllvm17t64:amd64. Preparing to unpack .../259-libllvm17t64_1%3a17.0.6-22+b3_amd64.deb ... Unpacking libllvm17t64:amd64 (1:17.0.6-22+b3) ... Selecting previously unselected package libamd-comgr2:amd64. Preparing to unpack .../260-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3+b2_amd64.deb ... Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../261-libnuma1_2.0.19-1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.19-1) ... Selecting previously unselected package libhsakmt1:amd64. Preparing to unpack .../262-libhsakmt1_6.2.4+ds-1_amd64.deb ... Unpacking libhsakmt1:amd64 (6.2.4+ds-1) ... Selecting previously unselected package libhsa-runtime64-1:amd64. Preparing to unpack .../263-libhsa-runtime64-1_6.1.2-3_amd64.deb ... Unpacking libhsa-runtime64-1:amd64 (6.1.2-3) ... Selecting previously unselected package libamdhip64-5:amd64. Preparing to unpack .../264-libamdhip64-5_5.7.1-6_amd64.deb ... Unpacking libamdhip64-5:amd64 (5.7.1-6) ... Selecting previously unselected package libaopalliance-java. Preparing to unpack .../265-libaopalliance-java_20070526-7_all.deb ... Unpacking libaopalliance-java (20070526-7) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../266-libapache-pom-java_33-2_all.deb ... Unpacking libapache-pom-java (33-2) ... Selecting previously unselected package libasm-java. Preparing to unpack .../267-libasm-java_9.8-1_all.deb ... Unpacking libasm-java (9.8-1) ... Selecting previously unselected package libatinject-jsr330-api-java. Preparing to unpack .../268-libatinject-jsr330-api-java_1.0+ds1-6_all.deb ... Unpacking libatinject-jsr330-api-java (1.0+ds1-6) ... Selecting previously unselected package libbrotli-dev:amd64. Preparing to unpack .../269-libbrotli-dev_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli-dev:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libbsh-java. Preparing to unpack .../270-libbsh-java_2.0b4-20_all.deb ... Unpacking libbsh-java (2.0b4-20) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../271-libcommons-parent-java_56-1_all.deb ... Unpacking libcommons-parent-java (56-1) ... Selecting previously unselected package libcommons-io-java. Preparing to unpack .../272-libcommons-io-java_2.19.0-1_all.deb ... Unpacking libcommons-io-java (2.19.0-1) ... Selecting previously unselected package libslf4j-java. Preparing to unpack .../273-libslf4j-java_1.7.32-2_all.deb ... Unpacking libslf4j-java (1.7.32-2) ... Selecting previously unselected package libmaven-shared-utils-java. Preparing to unpack .../274-libmaven-shared-utils-java_3.4.2-1_all.deb ... Unpacking libmaven-shared-utils-java (3.4.2-1) ... Selecting previously unselected package libcommons-cli-java. Preparing to unpack .../275-libcommons-cli-java_1.6.0-1_all.deb ... Unpacking libcommons-cli-java (1.6.0-1) ... Selecting previously unselected package libgeronimo-annotation-1.3-spec-java. Preparing to unpack .../276-libgeronimo-annotation-1.3-spec-java_1.3-1_all.deb ... Unpacking libgeronimo-annotation-1.3-spec-java (1.3-1) ... Selecting previously unselected package liberror-prone-java. Preparing to unpack .../277-liberror-prone-java_2.18.0-1_all.deb ... Unpacking liberror-prone-java (2.18.0-1) ... Selecting previously unselected package libjsr305-java. Preparing to unpack .../278-libjsr305-java_0.1~+svn49-12_all.deb ... Unpacking libjsr305-java (0.1~+svn49-12) ... Selecting previously unselected package libguava-java. Preparing to unpack .../279-libguava-java_32.0.1-1_all.deb ... Unpacking libguava-java (32.0.1-1) ... Selecting previously unselected package libguice-java. Preparing to unpack .../280-libguice-java_5.1.0-1_all.deb ... Unpacking libguice-java (5.1.0-1) ... Selecting previously unselected package libmaven-parent-java. Preparing to unpack .../281-libmaven-parent-java_43-2_all.deb ... Unpacking libmaven-parent-java (43-2) ... Selecting previously unselected package libcommons-lang3-java. Preparing to unpack .../282-libcommons-lang3-java_3.17.0-2_all.deb ... Unpacking libcommons-lang3-java (3.17.0-2) ... Selecting previously unselected package libplexus-utils2-java. Preparing to unpack .../283-libplexus-utils2-java_3.4.2-1_all.deb ... Unpacking libplexus-utils2-java (3.4.2-1) ... Selecting previously unselected package libwagon-provider-api-java. Preparing to unpack .../284-libwagon-provider-api-java_3.5.3-2_all.deb ... Unpacking libwagon-provider-api-java (3.5.3-2) ... Selecting previously unselected package libmaven-resolver-java. Preparing to unpack .../285-libmaven-resolver-java_1.9.22-1_all.deb ... Unpacking libmaven-resolver-java (1.9.22-1) ... Selecting previously unselected package libplexus-cipher-java. Preparing to unpack .../286-libplexus-cipher-java_2.0-1_all.deb ... Unpacking libplexus-cipher-java (2.0-1) ... Selecting previously unselected package libplexus-classworlds-java. Preparing to unpack .../287-libplexus-classworlds-java_2.7.0-1_all.deb ... Unpacking libplexus-classworlds-java (2.7.0-1) ... Selecting previously unselected package libplexus-component-annotations-java. Preparing to unpack .../288-libplexus-component-annotations-java_2.1.1-1_all.deb ... Unpacking libplexus-component-annotations-java (2.1.1-1) ... Selecting previously unselected package libplexus-interpolation-java. Preparing to unpack .../289-libplexus-interpolation-java_1.27-1_all.deb ... Unpacking libplexus-interpolation-java (1.27-1) ... Selecting previously unselected package libplexus-sec-dispatcher-java. Preparing to unpack .../290-libplexus-sec-dispatcher-java_2.0-3_all.deb ... Unpacking libplexus-sec-dispatcher-java (2.0-3) ... Selecting previously unselected package libgeronimo-interceptor-3.0-spec-java. Preparing to unpack .../291-libgeronimo-interceptor-3.0-spec-java_1.0.1-5_all.deb ... Unpacking libgeronimo-interceptor-3.0-spec-java (1.0.1-5) ... Selecting previously unselected package libcdi-api-java. Preparing to unpack .../292-libcdi-api-java_1.2-4_all.deb ... Unpacking libcdi-api-java (1.2-4) ... Selecting previously unselected package libsisu-inject-java. Preparing to unpack .../293-libsisu-inject-java_0.3.5-1_all.deb ... Unpacking libsisu-inject-java (0.3.5-1) ... Selecting previously unselected package libsisu-plexus-java. Preparing to unpack .../294-libsisu-plexus-java_0.3.5-1_all.deb ... Unpacking libsisu-plexus-java (0.3.5-1) ... Selecting previously unselected package libmaven3-core-java. Preparing to unpack .../295-libmaven3-core-java_3.9.9-1_all.deb ... Unpacking libmaven3-core-java (3.9.9-1) ... Selecting previously unselected package libmaven-shared-io-java. Preparing to unpack .../296-libmaven-shared-io-java_3.0.0-4_all.deb ... Unpacking libmaven-shared-io-java (3.0.0-4) ... Selecting previously unselected package libmaven-file-management-java. Preparing to unpack .../297-libmaven-file-management-java_3.0.0-2_all.deb ... Unpacking libmaven-file-management-java (3.0.0-2) ... Selecting previously unselected package libbuild-helper-maven-plugin-java. Preparing to unpack .../298-libbuild-helper-maven-plugin-java_3.3.0-1_all.deb ... Unpacking libbuild-helper-maven-plugin-java (3.3.0-1) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../299-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libcatch2-dev. Preparing to unpack .../300-libcatch2-dev_3.7.1-0.6_amd64.deb ... Unpacking libcatch2-dev (3.7.1-0.6) ... Selecting previously unselected package libcommons-collections3-java. Preparing to unpack .../301-libcommons-collections3-java_3.2.2-3_all.deb ... Unpacking libcommons-collections3-java (3.2.2-3) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../302-libcommons-logging-java_1.3.0-2_all.deb ... Unpacking libcommons-logging-java (1.3.0-2) ... Selecting previously unselected package libcommons-beanutils-java. Preparing to unpack .../303-libcommons-beanutils-java_1.10.1-1.1_all.deb ... Unpacking libcommons-beanutils-java (1.10.1-1.1) ... Selecting previously unselected package libcommons-codec-java. Preparing to unpack .../304-libcommons-codec-java_1.18.0-1_all.deb ... Unpacking libcommons-codec-java (1.18.0-1) ... Selecting previously unselected package libcommons-collections4-java. Preparing to unpack .../305-libcommons-collections4-java_4.4-2_all.deb ... Unpacking libcommons-collections4-java (4.4-2) ... Selecting previously unselected package libcommons-compress-java. Preparing to unpack .../306-libcommons-compress-java_1.27.1-2_all.deb ... Unpacking libcommons-compress-java (1.27.1-2) ... Selecting previously unselected package libcommons-digester-java. Preparing to unpack .../307-libcommons-digester-java_1.8.1-7_all.deb ... Unpacking libcommons-digester-java (1.8.1-7) ... Selecting previously unselected package libcommons-jexl2-java. Preparing to unpack .../308-libcommons-jexl2-java_2.1.1-6_all.deb ... Unpacking libcommons-jexl2-java (2.1.1-6) ... Selecting previously unselected package libcommons-lang-java. Preparing to unpack .../309-libcommons-lang-java_2.6-11_all.deb ... Unpacking libcommons-lang-java (2.6-11) ... Selecting previously unselected package libplexus-io-java. Preparing to unpack .../310-libplexus-io-java_3.3.1-2_all.deb ... Unpacking libplexus-io-java (3.3.1-2) ... Selecting previously unselected package libsnappy1v5:amd64. Preparing to unpack .../311-libsnappy1v5_1.2.2-2_amd64.deb ... Unpacking libsnappy1v5:amd64 (1.2.2-2) ... Selecting previously unselected package libsnappy-jni. Preparing to unpack .../312-libsnappy-jni_1.1.10.8-1_amd64.deb ... Unpacking libsnappy-jni (1.1.10.8-1) ... Selecting previously unselected package libsnappy-java. Preparing to unpack .../313-libsnappy-java_1.1.10.8-1_all.deb ... Unpacking libsnappy-java (1.1.10.8-1) ... Selecting previously unselected package libxz-java. Preparing to unpack .../314-libxz-java_1.9-1_all.deb ... Unpacking libxz-java (1.9-1) ... Selecting previously unselected package libplexus-archiver-java. Preparing to unpack .../315-libplexus-archiver-java_4.6.1-1_all.deb ... Unpacking libplexus-archiver-java (4.6.1-1) ... Selecting previously unselected package libmaven-archiver-java. Preparing to unpack .../316-libmaven-archiver-java_3.6.2-1_all.deb ... Unpacking libmaven-archiver-java (3.6.2-1) ... Selecting previously unselected package libmaven-jar-plugin-java. Preparing to unpack .../317-libmaven-jar-plugin-java_3.3.0-2_all.deb ... Unpacking libmaven-jar-plugin-java (3.3.0-2) ... Selecting previously unselected package libcommons-text-java. Preparing to unpack .../318-libcommons-text-java_1.13.1-1_all.deb ... Unpacking libcommons-text-java (1.13.1-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../319-sgml-base_1.31+nmu1_all.deb ... Unpacking sgml-base (1.31+nmu1) ... Selecting previously unselected package libcommons-validator-java. Preparing to unpack .../320-libcommons-validator-java_1%3a1.9.0-1_all.deb ... Unpacking libcommons-validator-java (1:1.9.0-1) ... Selecting previously unselected package libidn2-dev:amd64. Preparing to unpack .../321-libidn2-dev_2.3.8-4_amd64.deb ... Unpacking libidn2-dev:amd64 (2.3.8-4) ... Selecting previously unselected package libkrb5-dev:amd64. Preparing to unpack .../322-libkrb5-dev_1.21.3-5_amd64.deb ... Unpacking libkrb5-dev:amd64 (1.21.3-5) ... Selecting previously unselected package libldap-dev:amd64. Preparing to unpack .../323-libldap-dev_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap-dev:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../324-libpkgconf3_1.8.1-4_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../325-pkgconf-bin_1.8.1-4_amd64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../326-pkgconf_1.8.1-4_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:amd64. Preparing to unpack .../327-libnghttp2-dev_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-dev:amd64. Preparing to unpack .../328-libnghttp3-dev_1.11.0-1_amd64.deb ... Unpacking libnghttp3-dev:amd64 (1.11.0-1) ... Selecting previously unselected package libpsl-dev:amd64. Preparing to unpack .../329-libpsl-dev_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl-dev:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libgmpxx4ldbl:amd64. Preparing to unpack .../330-libgmpxx4ldbl_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Selecting previously unselected package libgmp-dev:amd64. Preparing to unpack .../331-libgmp-dev_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Selecting previously unselected package libevent-2.1-7t64:amd64. Preparing to unpack .../332-libevent-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:amd64. Preparing to unpack .../333-libunbound8_1.23.1-1_amd64.deb ... Unpacking libunbound8:amd64 (1.23.1-1) ... Selecting previously unselected package libgnutls-dane0t64:amd64. Preparing to unpack .../334-libgnutls-dane0t64_3.8.9-3_amd64.deb ... Unpacking libgnutls-dane0t64:amd64 (3.8.9-3) ... Selecting previously unselected package libgnutls-openssl27t64:amd64. Preparing to unpack .../335-libgnutls-openssl27t64_3.8.9-3_amd64.deb ... Unpacking libgnutls-openssl27t64:amd64 (3.8.9-3) ... Selecting previously unselected package libp11-kit-dev:amd64. Preparing to unpack .../336-libp11-kit-dev_0.25.5-3_amd64.deb ... Unpacking libp11-kit-dev:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6-dev:amd64. Preparing to unpack .../337-libtasn1-6-dev_4.20.0-2_amd64.deb ... Unpacking libtasn1-6-dev:amd64 (4.20.0-2) ... Selecting previously unselected package nettle-dev:amd64. Preparing to unpack .../338-nettle-dev_3.10.1-1_amd64.deb ... Unpacking nettle-dev:amd64 (3.10.1-1) ... Selecting previously unselected package libgnutls28-dev:amd64. Preparing to unpack .../339-libgnutls28-dev_3.8.9-3_amd64.deb ... Unpacking libgnutls28-dev:amd64 (3.8.9-3) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../340-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:amd64. Preparing to unpack .../341-librtmp-dev_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssl-dev:amd64. Preparing to unpack .../342-libssl-dev_3.5.2-1_amd64.deb ... Unpacking libssl-dev:amd64 (3.5.2-1) ... Selecting previously unselected package libssh2-1-dev:amd64. Preparing to unpack .../343-libssh2-1-dev_1.11.1-1_amd64.deb ... Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... Selecting previously unselected package libzstd-dev:amd64. Preparing to unpack .../344-libzstd-dev_1.5.7+dfsg-1.1_amd64.deb ... Unpacking libzstd-dev:amd64 (1.5.7+dfsg-1.1) ... Selecting previously unselected package libcurl4-openssl-dev:amd64. Preparing to unpack .../345-libcurl4-openssl-dev_8.15.0-1_amd64.deb ... Unpacking libcurl4-openssl-dev:amd64 (8.15.0-1) ... Selecting previously unselected package libcurlpp0t64:amd64. Preparing to unpack .../346-libcurlpp0t64_0.8.1-6_amd64.deb ... Unpacking libcurlpp0t64:amd64 (0.8.1-6) ... Selecting previously unselected package libcurlpp-dev:amd64. Preparing to unpack .../347-libcurlpp-dev_0.8.1-6_amd64.deb ... Unpacking libcurlpp-dev:amd64 (0.8.1-6) ... Selecting previously unselected package libjaxen-java. Preparing to unpack .../348-libjaxen-java_1.1.6-5_all.deb ... Unpacking libjaxen-java (1.1.6-5) ... Selecting previously unselected package libdom4j-java. Preparing to unpack .../349-libdom4j-java_2.1.4-1_all.deb ... Unpacking libdom4j-java (2.1.4-1) ... Selecting previously unselected package libdoxia-core-java. Preparing to unpack .../350-libdoxia-core-java_2.0.0-1_all.deb ... Unpacking libdoxia-core-java (2.0.0-1) ... Selecting previously unselected package libplexus-xml-java. Preparing to unpack .../351-libplexus-xml-java_3.0.1-2_all.deb ... Unpacking libplexus-xml-java (3.0.1-2) ... Selecting previously unselected package libdoxia-java. Preparing to unpack .../352-libdoxia-java_2.0.0-1_all.deb ... Unpacking libdoxia-java (2.0.0-1) ... Selecting previously unselected package libmaven-reporting-api-java. Preparing to unpack .../353-libmaven-reporting-api-java_4.0.0-1_all.deb ... Unpacking libmaven-reporting-api-java (4.0.0-1) ... Selecting previously unselected package libxbean-reflect-java. Preparing to unpack .../354-libxbean-reflect-java_4.5-9_all.deb ... Unpacking libxbean-reflect-java (4.5-9) ... Selecting previously unselected package libplexus-container-default-java. Preparing to unpack .../355-libplexus-container-default-java_2.1.1-1_all.deb ... Unpacking libplexus-container-default-java (2.1.1-1) ... Selecting previously unselected package libplexus-i18n-java. Preparing to unpack .../356-libplexus-i18n-java_1.0-beta-10-6_all.deb ... Unpacking libplexus-i18n-java (1.0-beta-10-6) ... Selecting previously unselected package velocity. Preparing to unpack .../357-velocity_1.7-7_all.deb ... Unpacking velocity (1.7-7) ... Selecting previously unselected package libplexus-velocity-java. Preparing to unpack .../358-libplexus-velocity-java_1.2-4_all.deb ... Unpacking libplexus-velocity-java (1.2-4) ... Selecting previously unselected package liboro-java. Preparing to unpack .../359-liboro-java_2.0.8a-15_all.deb ... Unpacking liboro-java (2.0.8a-15) ... Selecting previously unselected package libvelocity-tools-java. Preparing to unpack .../360-libvelocity-tools-java_2.0-9_all.deb ... Unpacking libvelocity-tools-java (2.0-9) ... Selecting previously unselected package libdoxia-sitetools-java. Preparing to unpack .../361-libdoxia-sitetools-java_2.0.0-1_all.deb ... Unpacking libdoxia-sitetools-java (2.0.0-1) ... Selecting previously unselected package libel-api-java. Preparing to unpack .../362-libel-api-java_3.0.0-3_all.deb ... Unpacking libel-api-java (3.0.0-3) ... Selecting previously unselected package libevent-core-2.1-7t64:amd64. Preparing to unpack .../363-libevent-core-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libevent-extra-2.1-7t64:amd64. Preparing to unpack .../364-libevent-extra-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. Preparing to unpack .../365-libevent-pthreads-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libevent-openssl-2.1-7t64:amd64. Preparing to unpack .../366-libevent-openssl-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libevent-dev. Preparing to unpack .../367-libevent-dev_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-dev (2.1.12-stable-10+b1) ... Selecting previously unselected package libezmorph-java. Preparing to unpack .../368-libezmorph-java_1.0.6-4_all.deb ... Unpacking libezmorph-java (1.0.6-4) ... Selecting previously unselected package libpsm2-2. Preparing to unpack .../369-libpsm2-2_11.2.185-2.1_amd64.deb ... Unpacking libpsm2-2 (11.2.185-2.1) ... Selecting previously unselected package librdmacm1t64:amd64. Preparing to unpack .../370-librdmacm1t64_56.1-1_amd64.deb ... Unpacking librdmacm1t64:amd64 (56.1-1) ... Selecting previously unselected package libfabric1:amd64. Preparing to unpack .../371-libfabric1_2.1.0-1.1_amd64.deb ... Unpacking libfabric1:amd64 (2.1.0-1.1) ... Selecting previously unselected package libfmt10:amd64. Preparing to unpack .../372-libfmt10_10.1.1+ds1-4_amd64.deb ... Unpacking libfmt10:amd64 (10.1.1+ds1-4) ... Selecting previously unselected package libfmt-dev:amd64. Preparing to unpack .../373-libfmt-dev_10.1.1+ds1-4_amd64.deb ... Unpacking libfmt-dev:amd64 (10.1.1+ds1-4) ... Selecting previously unselected package libgetopt-java. Preparing to unpack .../374-libgetopt-java_1.0.14+dfsg-6_all.deb ... Unpacking libgetopt-java (1.0.14+dfsg-6) ... Selecting previously unselected package libgoogle-gson-java. Preparing to unpack .../375-libgoogle-gson-java_2.10.1-1_all.deb ... Unpacking libgoogle-gson-java (2.10.1-1) ... Selecting previously unselected package libxml-commons-external-java. Preparing to unpack .../376-libxml-commons-external-java_1.4.01-6_all.deb ... Unpacking libxml-commons-external-java (1.4.01-6) ... Selecting previously unselected package libxml-commons-resolver1.1-java. Preparing to unpack .../377-libxml-commons-resolver1.1-java_1.2-11_all.deb ... Unpacking libxml-commons-resolver1.1-java (1.2-11) ... Selecting previously unselected package libxerces2-java. Preparing to unpack .../378-libxerces2-java_2.12.2-1_all.deb ... Unpacking libxerces2-java (2.12.2-1) ... Selecting previously unselected package libxom-java. Preparing to unpack .../379-libxom-java_1.3.9-1_all.deb ... Unpacking libxom-java (1.3.9-1) ... Selecting previously unselected package libjson-java. Preparing to unpack .../380-libjson-java_3.1.0+dfsg-2_all.deb ... Unpacking libjson-java (3.1.0+dfsg-2) ... Selecting previously unselected package libmbedcrypto16:amd64. Preparing to unpack .../381-libmbedcrypto16_3.6.4-2_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.4-2) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../382-libmbedx509-7_3.6.4-2_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.4-2) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../383-libmbedtls21_3.6.4-2_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.4-2) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../384-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../385-libncbi-vdb3_3.2.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-ngs3:amd64. Preparing to unpack .../386-libncbi-ngs3_3.2.1+dfsg-5_amd64.deb ... Unpacking libncbi-ngs3:amd64 (3.2.1+dfsg-5) ... Selecting previously unselected package libngs-jni:amd64. Preparing to unpack .../387-libngs-jni_3.2.1+dfsg-5_amd64.deb ... Unpacking libngs-jni:amd64 (3.2.1+dfsg-5) ... Selecting previously unselected package libngs-java:amd64. Preparing to unpack .../388-libngs-java_3.2.1+dfsg-5_amd64.deb ... Unpacking libngs-java:amd64 (3.2.1+dfsg-5) ... Selecting previously unselected package librhino-java. Preparing to unpack .../389-librhino-java_1.7.15-1_all.deb ... Unpacking librhino-java (1.7.15-1) ... Selecting previously unselected package libhtsjdk-java. Preparing to unpack .../390-libhtsjdk-java_4.1.3+dfsg-2_all.deb ... Unpacking libhtsjdk-java (4.1.3+dfsg-2) ... Selecting previously unselected package libhttpcore-java. Preparing to unpack .../391-libhttpcore-java_4.4.16-1_all.deb ... Unpacking libhttpcore-java (4.4.16-1) ... Selecting previously unselected package libhttpclient-java. Preparing to unpack .../392-libhttpclient-java_4.5.14-1_all.deb ... Unpacking libhttpclient-java (4.5.14-1) ... Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../393-libhwloc15_2.12.2-1_amd64.deb ... Unpacking libhwloc15:amd64 (2.12.2-1) ... Selecting previously unselected package libnuma-dev:amd64. Preparing to unpack .../394-libnuma-dev_2.0.19-1_amd64.deb ... Unpacking libnuma-dev:amd64 (2.0.19-1) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../395-libltdl7_2.5.4-5_amd64.deb ... Unpacking libltdl7:amd64 (2.5.4-5) ... Selecting previously unselected package libltdl-dev:amd64. Preparing to unpack .../396-libltdl-dev_2.5.4-5_amd64.deb ... Unpacking libltdl-dev:amd64 (2.5.4-5) ... Selecting previously unselected package libhwloc-dev:amd64. Preparing to unpack .../397-libhwloc-dev_2.12.2-1_amd64.deb ... Unpacking libhwloc-dev:amd64 (2.12.2-1) ... Selecting previously unselected package libxnvctrl0:amd64. Preparing to unpack .../398-libxnvctrl0_535.171.04-1+b2_amd64.deb ... Unpacking libxnvctrl0:amd64 (535.171.04-1+b2) ... Selecting previously unselected package libze1:amd64. Preparing to unpack .../399-libze1_1.24.1-2_amd64.deb ... Unpacking libze1:amd64 (1.24.1-2) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../400-ocl-icd-libopencl1_2.3.3-1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.3-1) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../401-libhwloc-plugins_2.12.2-1_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.12.2-1) ... Selecting previously unselected package libibumad3:amd64. Preparing to unpack .../402-libibumad3_56.1-1_amd64.deb ... Unpacking libibumad3:amd64 (56.1-1) ... Selecting previously unselected package libibmad5:amd64. Preparing to unpack .../403-libibmad5_56.1-1_amd64.deb ... Unpacking libibmad5:amd64 (56.1-1) ... Selecting previously unselected package libnl-3-dev:amd64. Preparing to unpack .../404-libnl-3-dev_3.11.0-2_amd64.deb ... Unpacking libnl-3-dev:amd64 (3.11.0-2) ... Selecting previously unselected package libnl-route-3-dev:amd64. Preparing to unpack .../405-libnl-route-3-dev_3.11.0-2_amd64.deb ... Unpacking libnl-route-3-dev:amd64 (3.11.0-2) ... Selecting previously unselected package libibverbs-dev:amd64. Preparing to unpack .../406-libibverbs-dev_56.1-1_amd64.deb ... Unpacking libibverbs-dev:amd64 (56.1-1) ... Selecting previously unselected package libjansi-java. Preparing to unpack .../407-libjansi-java_2.4.1-2_all.deb ... Unpacking libjansi-java (2.4.1-2) ... Selecting previously unselected package libjcommander-java. Preparing to unpack .../408-libjcommander-java_1.71-4_all.deb ... Unpacking libjcommander-java (1.71-4) ... Selecting previously unselected package libjsp-api-java. Preparing to unpack .../409-libjsp-api-java_2.3.4-3_all.deb ... Unpacking libjsp-api-java (2.3.4-3) ... Selecting previously unselected package libservlet-api-java. Preparing to unpack .../410-libservlet-api-java_4.0.1-2_all.deb ... Unpacking libservlet-api-java (4.0.1-2) ... Selecting previously unselected package libwebsocket-api-java. Preparing to unpack .../411-libwebsocket-api-java_1.1-2_all.deb ... Unpacking libwebsocket-api-java (1.1-2) ... Selecting previously unselected package libjetty9-java. Preparing to unpack .../412-libjetty9-java_9.4.57-1.1_all.deb ... Unpacking libjetty9-java (9.4.57-1.1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../413-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../414-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... Selecting previously unselected package libjson-simple-java. Preparing to unpack .../415-libjson-simple-java_2.3.0-2_all.deb ... Unpacking libjson-simple-java (2.3.0-2) ... Selecting previously unselected package libjsoup-java. Preparing to unpack .../416-libjsoup-java_1.15.3-1_all.deb ... Unpacking libjsoup-java (1.15.3-1) ... Selecting previously unselected package libjtidy-java. Preparing to unpack .../417-libjtidy-java_7+svn20110807-6_all.deb ... Unpacking libjtidy-java (7+svn20110807-6) ... Selecting previously unselected package liblightcouch-java. Preparing to unpack .../418-liblightcouch-java_0.2.0-1_all.deb ... Unpacking liblightcouch-java (0.2.0-1) ... Selecting previously unselected package libmongodb-java. Preparing to unpack .../419-libmongodb-java_3.6.3-2_all.deb ... Unpacking libmongodb-java (3.6.3-2) ... Selecting previously unselected package liblog4j2-java. Preparing to unpack .../420-liblog4j2-java_2.19.0-2_all.deb ... Unpacking liblog4j2-java (2.19.0-2) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../421-liblzma-dev_5.8.1-1.1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.8.1-1.1) ... Selecting previously unselected package libmaven-antrun-plugin-java. Preparing to unpack .../422-libmaven-antrun-plugin-java_3.1.0-1_all.deb ... Unpacking libmaven-antrun-plugin-java (3.1.0-1) ... Selecting previously unselected package libmaven-clean-plugin-java. Preparing to unpack .../423-libmaven-clean-plugin-java_3.2.0-2_all.deb ... Unpacking libmaven-clean-plugin-java (3.2.0-2) ... Selecting previously unselected package libmaven-common-artifact-filters-java. Preparing to unpack .../424-libmaven-common-artifact-filters-java_3.4.0-1_all.deb ... Unpacking libmaven-common-artifact-filters-java (3.4.0-1) ... Selecting previously unselected package libmaven-shared-incremental-java. Preparing to unpack .../425-libmaven-shared-incremental-java_1.1-6_all.deb ... Unpacking libmaven-shared-incremental-java (1.1-6) ... Selecting previously unselected package libplexus-compiler-java. Preparing to unpack .../426-libplexus-compiler-java_2.13.0-1_all.deb ... Unpacking libplexus-compiler-java (2.13.0-1) ... Selecting previously unselected package libqdox2-java. Preparing to unpack .../427-libqdox2-java_2.0.3-1_all.deb ... Unpacking libqdox2-java (2.0.3-1) ... Selecting previously unselected package libplexus-languages-java. Preparing to unpack .../428-libplexus-languages-java_1.1.1-3_all.deb ... Unpacking libplexus-languages-java (1.1.1-3) ... Selecting previously unselected package libmaven-compiler-plugin-java. Preparing to unpack .../429-libmaven-compiler-plugin-java_3.13.0-1_all.deb ... Unpacking libmaven-compiler-plugin-java (3.13.0-1) ... Selecting previously unselected package libplexus-build-api-java. Preparing to unpack .../430-libplexus-build-api-java_0.0.7-4_all.deb ... Unpacking libplexus-build-api-java (0.0.7-4) ... Selecting previously unselected package libmaven-filtering-java. Preparing to unpack .../431-libmaven-filtering-java_3.4.0-1_all.deb ... Unpacking libmaven-filtering-java (3.4.0-1) ... Selecting previously unselected package libplexus-ant-factory-java. Preparing to unpack .../432-libplexus-ant-factory-java_1.0~alpha2.1-5_all.deb ... Unpacking libplexus-ant-factory-java (1.0~alpha2.1-5) ... Selecting previously unselected package libplexus-container-default1.5-java. Preparing to unpack .../433-libplexus-container-default1.5-java_2.1.1-1_all.deb ... Unpacking libplexus-container-default1.5-java (2.1.1-1) ... Selecting previously unselected package libplexus-bsh-factory-java. Preparing to unpack .../434-libplexus-bsh-factory-java_1.0~alpha7-5_all.deb ... Unpacking libplexus-bsh-factory-java (1.0~alpha7-5) ... Selecting previously unselected package libmaven-plugin-tools-java. Preparing to unpack .../435-libmaven-plugin-tools-java_3.10.2-2_all.deb ... Unpacking libmaven-plugin-tools-java (3.10.2-2) ... Selecting previously unselected package libmaven-reporting-exec-java. Preparing to unpack .../436-libmaven-reporting-exec-java_2.0.0-1_all.deb ... Unpacking libmaven-reporting-exec-java (2.0.0-1) ... Selecting previously unselected package libmaven-reporting-impl-java. Preparing to unpack .../437-libmaven-reporting-impl-java_4.0.0-1_all.deb ... Unpacking libmaven-reporting-impl-java (4.0.0-1) ... Selecting previously unselected package libmaven-resources-plugin-java. Preparing to unpack .../438-libmaven-resources-plugin-java_3.3.1-1_all.deb ... Unpacking libmaven-resources-plugin-java (3.3.1-1) ... Selecting previously unselected package libmaven-site-plugin-java. Preparing to unpack .../439-libmaven-site-plugin-java_3.21.0-1_all.deb ... Unpacking libmaven-site-plugin-java (3.21.0-1) ... Selecting previously unselected package libmuparserx4.0.12:amd64. Preparing to unpack .../440-libmuparserx4.0.12_4.0.12-2_amd64.deb ... Unpacking libmuparserx4.0.12:amd64 (4.0.12-2) ... Selecting previously unselected package libmuparserx-dev:amd64. Preparing to unpack .../441-libmuparserx-dev_4.0.12-2_amd64.deb ... Unpacking libmuparserx-dev:amd64 (4.0.12-2) ... Selecting previously unselected package libucx0:amd64. Preparing to unpack .../442-libucx0_1.19.0+ds-1_amd64.deb ... Unpacking libucx0:amd64 (1.19.0+ds-1) ... Selecting previously unselected package libopenmpi40:amd64. Preparing to unpack .../443-libopenmpi40_5.0.8-9_amd64.deb ... Unpacking libopenmpi40:amd64 (5.0.8-9) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../444-openmpi-common_5.0.8-9_all.deb ... Unpacking openmpi-common (5.0.8-9) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../445-openmpi-bin_5.0.8-9_amd64.deb ... Unpacking openmpi-bin (5.0.8-9) ... Selecting previously unselected package libopenmpi-dev:amd64. Preparing to unpack .../446-libopenmpi-dev_5.0.8-9_amd64.deb ... Unpacking libopenmpi-dev:amd64 (5.0.8-9) ... Selecting previously unselected package libprotobuf32t64:amd64. Preparing to unpack .../447-libprotobuf32t64_3.21.12-11_amd64.deb ... Unpacking libprotobuf32t64:amd64 (3.21.12-11) ... Selecting previously unselected package libprotobuf-lite32t64:amd64. Preparing to unpack .../448-libprotobuf-lite32t64_3.21.12-11_amd64.deb ... Unpacking libprotobuf-lite32t64:amd64 (3.21.12-11) ... Selecting previously unselected package libprotobuf-dev:amd64. Preparing to unpack .../449-libprotobuf-dev_3.21.12-11_amd64.deb ... Unpacking libprotobuf-dev:amd64 (3.21.12-11) ... Selecting previously unselected package libprotobuf-java. Preparing to unpack .../450-libprotobuf-java_3.21.12-11_all.deb ... Unpacking libprotobuf-java (3.21.12-11) ... Selecting previously unselected package libprotoc32t64:amd64. Preparing to unpack .../451-libprotoc32t64_3.21.12-11_amd64.deb ... Unpacking libprotoc32t64:amd64 (3.21.12-11) ... Selecting previously unselected package libspdlog1.15:amd64. Preparing to unpack .../452-libspdlog1.15_1%3a1.15.3+ds-1_amd64.deb ... Unpacking libspdlog1.15:amd64 (1:1.15.3+ds-1) ... Selecting previously unselected package libspdlog-dev:amd64. Preparing to unpack .../453-libspdlog-dev_1%3a1.15.3+ds-1_amd64.deb ... Unpacking libspdlog-dev:amd64 (1:1.15.3+ds-1) ... Selecting previously unselected package libsurefire-java. Preparing to unpack .../454-libsurefire-java_2.22.3-4_all.deb ... Unpacking libsurefire-java (2.22.3-4) ... Selecting previously unselected package libwagon-file-java. Preparing to unpack .../455-libwagon-file-java_3.5.3-2_all.deb ... Unpacking libwagon-file-java (3.5.3-2) ... Selecting previously unselected package libwagon-http-java. Preparing to unpack .../456-libwagon-http-java_3.5.3-2_all.deb ... Unpacking libwagon-http-java (3.5.3-2) ... Selecting previously unselected package libxml2-utils. Preparing to unpack .../457-libxml2-utils_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-utils (2.14.5+dfsg-0.2) ... Selecting previously unselected package maven. Preparing to unpack .../458-maven_3.9.9-1_all.deb ... Unpacking maven (3.9.9-1) ... Selecting previously unselected package maven-repo-helper. Preparing to unpack .../459-maven-repo-helper_1.12_all.deb ... Unpacking maven-repo-helper (1.12) ... Selecting previously unselected package unzip. Preparing to unpack .../460-unzip_6.0-29_amd64.deb ... Unpacking unzip (6.0-29) ... Selecting previously unselected package maven-debian-helper. Preparing to unpack .../461-maven-debian-helper_2.6.9_all.deb ... Unpacking maven-debian-helper (2.6.9) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../462-mpi-default-dev_1.18_amd64.deb ... Unpacking mpi-default-dev (1.18) ... Selecting previously unselected package protobuf-compiler. Preparing to unpack .../463-protobuf-compiler_3.21.12-11_amd64.deb ... Unpacking protobuf-compiler (3.21.12-11) ... Selecting previously unselected package rapidjson-dev. Preparing to unpack .../464-rapidjson-dev_1.1.0+dfsg2-7.4_all.deb ... Unpacking rapidjson-dev (1.1.0+dfsg2-7.4) ... Selecting previously unselected package testng. Preparing to unpack .../465-testng_6.9.12-4_all.deb ... Unpacking testng (6.9.12-4) ... Selecting previously unselected package uuid-dev:amd64. Preparing to unpack .../466-uuid-dev_2.41.1-3_amd64.deb ... Unpacking uuid-dev:amd64 (2.41.1-3) ... Setting up libprotobuf-lite32t64:amd64 (3.21.12-11) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up fastjar (2:0.98-7) ... Setting up libgraphite2-3:amd64 (1.3.14-3) ... Setting up liblcms2-2:amd64 (2.16-2) ... Setting up libpixman-1-0:amd64 (0.44.0-3) ... Setting up libjcommander-java (1.71-4) ... Setting up wdiff (1.2.2-9) ... Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... Setting up libpciaccess0:amd64 (0.17-3+b3) ... Setting up libslf4j-java (1.7.32-2) ... Setting up libprotobuf32t64:amd64 (3.21.12-11) ... Setting up libfile-which-perl (1.27-2) ... Setting up systemd-sysv (258~rc4-1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libplexus-utils2-java (3.4.2-1) ... Setting up libnpth0t64:amd64 (1.8-3) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libapparmor1:amd64 (4.1.0-1) ... Setting up libplexus-classworlds-java (2.7.0-1) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libopentest4j-reporting-java (0.1.0-M1-2) ... Setting up libplexus-build-api-java (0.0.7-4) ... Setting up libxcb-xfixes0:amd64 (1.17.0-2+b1) ... Setting up libzstd-dev:amd64 (1.5.7+dfsg-1.1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up libjsr305-java (0.1~+svn49-12) ... Setting up libmuparserx4.0.12:amd64 (4.0.12-2) ... Setting up bsdextrautils (2.41.1-3) ... Setting up hicolor-icon-theme (0.18-2) ... Setting up libgpg-error0:amd64 (1.55-2) ... Setting up java-common (0.76) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libdatrie1:amd64 (0.2.13-4) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up libqdox2-java (2.0.3-1) ... Setting up libaopalliance-java (20070526-7) ... Setting up libmuparserx-dev:amd64 (4.0.12-2) ... Setting up libcommons-cli-java (1.6.0-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libcbor0.10:amd64 (0.10.2-2) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libgetopt-java (1.0.14+dfsg-6) ... Setting up libglvnd0:amd64 (1.7.0-1+b2) ... Setting up libgoogle-gson-java (2.10.1-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libxcb-glx0:amd64 (1.17.0-2+b1) ... Setting up unzip (6.0-29) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libedit2:amd64 (3.1-20250104-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-5) ... Setting up libuv1t64:amd64 (1.51.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libpicocli-java (4.6.2-2) ... Setting up libasm-java (9.8-1) ... Setting up x11-common (1:7.7+25) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.32-1) ... Setting up libsensors-config (1:3.6.2-2) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up libibumad3:amd64 (56.1-1) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libel-api-java (3.0.0-3) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libgcrypt20:amd64 (1.11.2-2) ... Setting up xkb-data (2.42-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libplexus-component-annotations-java (2.1.1-1) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libibmad5:amd64 (56.1-1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libjson-simple-java (2.3.0-2) ... Setting up libunivocity-parsers-java (2.9.1-1) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libze1:amd64 (1.24.1-2) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.4) ... Setting up liboro-java (2.0.8a-15) ... Setting up libsnappy1v5:amd64 (1.2.2-2) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Oct 21 06:40:35 UTC 2026. Universal Time is now: Wed Oct 21 06:40:35 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-5) ... Setting up libcommons-collections3-java (3.2.2-3) ... Setting up libasound2-data (1.2.14-2) ... Setting up libio-string-perl (1.08-4) ... Setting up librhino-java (1.7.15-1) ... Setting up autotools-dev (20240727.1) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up rsopv (0.6.4-1) ... update-alternatives: using /usr/bin/rsopv to provide /usr/bin/sopv (sopv) in auto mode Setting up libunbound8:amd64 (1.23.1-1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Setting up libasound2t64:amd64 (1.2.14-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libjaxen-java (1.1.6-5) ... Setting up libapiguardian-java (1.1.2-1) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libepoxy0:amd64 (1.5.10-2) ... Setting up libnspr4:amd64 (2:4.36-1) ... Setting up libxcb-sync1:amd64 (1.17.0-2+b1) ... Setting up libjsoncpp26:amd64 (1.9.6-4) ... Setting up libjtidy-java (7+svn20110807-6) ... Setting up uuid-dev:amd64 (2.41.1-3) ... Setting up libjansi-java (2.4.1-2) ... Setting up libapache-pom-java (33-2) ... Setting up libavahi-common-data:amd64 (0.8-17) ... Setting up libatinject-jsr330-api-java (1.0+ds1-6) ... Setting up libdbus-1-3:amd64 (1.16.2-2) ... Setting up libwebsocket-api-java (1.1-2) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Setting up libplexus-interpolation-java (1.27-1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:amd64 (3.5.2-1) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up libhwloc15:amd64 (2.12.2-1) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libxz-java (1.9-1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.23.1-2) ... Setting up binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Created symlink '/etc/systemd/system/multi-user.target.wants/binfmt-support.service' -> '/usr/lib/systemd/system/binfmt-support.service'. Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libpcsclite1:amd64 (2.3.3-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libsensors5:amd64 (1:3.6.2-2) ... Setting up libmongodb-java (3.6.3-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libltdl7:amd64 (2.5.4-5) ... Setting up libhamcrest-java (2.2-2) ... Setting up libbsh-java (2.0b4-20) ... Setting up libjsp-api-java (2.3.4-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libgfortran5:amd64 (15.2.0-4) ... Setting up libvulkan1:amd64 (1.4.321.0-1) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.11.0-1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libnghttp3-dev:amd64 (1.11.0-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:amd64 (5.8.1-1.1) ... Setting up libgif7:amd64 (5.2.2-1+b1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up libnuma1:amd64 (2.0.19-1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up ocl-icd-libopencl1:amd64 (2.3.3-1) ... Setting up libxshmfence1:amd64 (1.3.3-1) ... Setting up libjsoup-java (1.15.3-1) ... Setting up at-spi2-common (2.58.0-1) ... Setting up libtiff6:amd64 (4.7.0-5) ... Setting up libxcb-randr0:amd64 (1.17.0-2+b1) ... Setting up dbus-session-bus-common (1.16.2-2) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libassuan9:amd64 (3.0.2-2) ... Setting up libxml-commons-external-java (1.4.01-6) ... Setting up procps (2:4.0.4-9) ... Setting up libxbean-reflect-java (4.5-9) ... Setting up libnl-3-200:amd64 (3.11.0-2) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up libplexus-xml-java (3.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up libopentest4j-java (1.2.0-4) ... Setting up openmpi-common (5.0.8-9) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up cmake-data (4.1.1+really3.31.6-1) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libwayland-egl1:amd64 (1.24.0-2+b1) ... Setting up libmbedcrypto16:amd64 (3.6.4-2) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libprotoc32t64:amd64 (3.21.12-11) ... Setting up libxerces2-java (2.12.2-1) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up dbus-system-bus-common (1.16.2-2) ... Creating group 'messagebus' with GID 997. Creating user 'messagebus' (System Message Bus) with UID 997 and GID 997. Setting up libfido2-1:amd64 (1.16.0-2) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up openssl (3.5.2-1) ... Setting up libcatch2-dev (3.7.1-0.6) ... Setting up libdrm-common (2.4.125-2) ... Setting up libcdi-api-java (1.2-4) ... Setting up libsnappy-jni (1.1.10.8-1) ... Setting up libezmorph-java (1.0.6-4) ... Setting up libxcomposite1:amd64 (1:0.4.6-1) ... Setting up libarchive13t64:amd64 (3.7.4-4+b1) ... Setting up readline-common (8.3-3) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up liburi-perl (5.30-1) ... Setting up dbus-bin (1.16.2-2) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ... Setting up libfmt10:amd64 (10.1.1+ds1-4) ... Setting up chrpath (0.18-1) ... Setting up libfile-touch-perl (0.12-2) ... Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up libxkbcommon0:amd64 (1.7.0-2.1) ... Setting up libwayland-client0:amd64 (1.24.0-2+b1) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libksba8:amd64 (1.6.7-2+b1) ... Setting up pinentry-curses (1.3.2-3) ... Setting up libdom4j-java (2.1.4-1) ... Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Setting up libwagon-provider-api-java (3.5.3-2) ... Setting up libllvm19:amd64 (1:19.1.7-3+b2) ... Setting up libx11-xcb1:amd64 (2:1.8.12-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libjetty9-java (9.4.57-1.1) ... Setting up libxdamage1:amd64 (1:1.1.6-1+b2) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libplexus-languages-java (1.1.1-3) ... Setting up protobuf-compiler (3.21.12-11) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up jarwrapper (0.81) ... Setting up libtool (2.5.4-5) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libmaven-parent-java (43-2) ... Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:amd64 (0.8-17) ... Setting up libcommons-logging-java (1.3.0-2) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libnet-http-perl (6.23-1) ... Setting up libsisu-inject-java (0.3.5-1) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libnss3:amd64 (2:3.114-1) ... Setting up dbus-daemon (1.16.2-2) ... Setting up libxom-java (1.3.9-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-2) ... Setting up libgfortran-15-dev:amd64 (15.2.0-4) ... Setting up libcommons-lang-java (2.6-11) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.19-1) ... Setting up libnl-route-3-200:amd64 (3.11.0-2) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up libprotobuf-dev:amd64 (3.21.12-11) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up libltdl-dev:amd64 (2.5.4-5) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.5-1) ... Setting up libglib2.0-0t64:amd64 (2.84.4-3) ... Setting up libmbedx509-7:amd64 (3.6.4-2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libllvm17t64:amd64 (1:17.0.6-22+b3) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b4) ... Setting up testng (6.9.12-4) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ... Setting up dbus (1.16.2-2) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-5+b3) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b4) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libxrandr2:amd64 (2:1.5.4-1+b3) ... Setting up libcommons-collections4-java (4.4-2) ... Setting up libfmt-dev:amd64 (10.1.1+ds1-4) ... Setting up libspdlog1.15:amd64 (1:1.15.3+ds-1) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-4) ... Setting up libcommons-lang3-java (3.17.0-2) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libmbedtls21:amd64 (3.6.4-2) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdrm2:amd64 (2.4.125-2) ... Setting up libnl-3-dev:amd64 (3.11.0-2) ... Setting up groff-base (1.23.0-9) ... Setting up libwayland-cursor0:amd64 (1.24.0-2+b1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up gpgconf (2.4.8-3) ... Setting up libpam-systemd:amd64 (258~rc4-1) ... Setting up libcommons-beanutils-java (1.10.1-1.1) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up libharfbuzz0b:amd64 (11.4.5-1) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-5) ... Setting up libhwloc-dev:amd64 (2.12.2-1) ... Setting up libsnappy-java (1.1.10.8-1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libwagon-file-java (3.5.3-2) ... Setting up libxml2-utils (2.14.5+dfsg-0.2) ... Setting up libcommons-codec-java (1.18.0-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libavahi-client3:amd64 (0.8-17) ... Setting up libio-socket-ssl-perl (2.095-1) ... Setting up gpg (2.4.8-3) ... Created symlink '/etc/systemd/user/sockets.target.wants/keyboxd.socket' -> '/usr/lib/systemd/user/keyboxd.socket'. Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libdrm-amdgpu1:amd64 (2.4.125-2) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-3) ... Setting up gtk-update-icon-cache (4.20.1+ds-2) ... Setting up gfortran-15-x86-64-linux-gnu (15.2.0-4) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up velocity (1.7-7) ... Setting up libibverbs1:amd64 (56.1-1) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up gpg-agent (2.4.8-3) ... Created symlink '/etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket' -> '/usr/lib/systemd/user/gpg-agent-browser.socket'. Created symlink '/etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket' -> '/usr/lib/systemd/user/gpg-agent-extra.socket'. Created symlink '/etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket' -> '/usr/lib/systemd/user/gpg-agent-ssh.socket'. Created symlink '/etc/systemd/user/sockets.target.wants/gpg-agent.socket' -> '/usr/lib/systemd/user/gpg-agent.socket'. Setting up libatk1.0-0t64:amd64 (2.58.0-1) ... Setting up openjdk-21-jre-headless:amd64 (21.0.9~5ea-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libxi6:amd64 (2:1.8.2-1) ... Setting up ibverbs-providers:amd64 (56.1-1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up python3.13 (3.13.7-1) ... Setting up libcommons-io-java (2.19.0-1) ... Setting up libcommons-digester-java (1.8.1-7) ... Setting up openssh-client (1:10.0p1-8) ... Created symlink '/etc/systemd/user/sockets.target.wants/ssh-agent.socket' -> '/usr/lib/systemd/user/ssh-agent.socket'. Setting up libxtst6:amd64 (2:1.2.5-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libxcursor1:amd64 (1:1.2.3-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up libpango-1.0-0:amd64 (1.56.3-2) ... Setting up libdrm-intel1:amd64 (2.4.125-2) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up libcloudproviders0:amd64 (0.3.6-2) ... Setting up python3 (3.13.7-1) ... Setting up libhwloc-plugins:amd64 (2.12.2-1) ... Setting up libspdlog-dev:amd64 (1:1.15.3+ds-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' -> '/usr/lib/systemd/system/man-db.timer'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up libcolord2:amd64 (1.4.8-1) ... Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libdconf1:amd64 (0.40.0-5) ... Setting up libnl-route-3-dev:amd64 (3.11.0-2) ... Setting up libmaven-filtering-java (3.4.0-1) ... Setting up dbus-user-session (1.16.2-2) ... Setting up libmaven-resolver-java (1.9.22-1) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-3) ... Setting up adwaita-icon-theme (49~rc-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libmodule-runtime-perl (0.018-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up libatspi2.0-0t64:amd64 (2.58.0-1) ... Setting up libevent-dev (2.1.12-stable-10+b1) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up libmaven-common-artifact-filters-java (3.4.0-1) ... Setting up librdmacm1t64:amd64 (56.1-1) ... Setting up liblightcouch-java (0.2.0-1) ... Setting up libwagon-http-java (3.5.3-2) ... Setting up libcairo-gobject2:amd64 (1.18.4-1+b1) ... Setting up libmaven-shared-utils-java (3.4.2-1) ... Setting up libpangoft2-1.0-0:amd64 (1.56.3-2) ... Setting up libmaven-resources-plugin-java (3.3.1-1) ... Setting up libcups2t64:amd64 (2.4.10-4) ... Setting up libhsakmt1:amd64 (6.2.4+ds-1) ... Setting up gfortran-15 (15.2.0-4) ... Setting up libpangocairo-1.0-0:amd64 (1.56.3-2) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up libgnutls28-dev:amd64 (3.8.9-3) ... Setting up libncbi-ngs3:amd64 (3.2.1+dfsg-5) ... Setting up libatk-bridge2.0-0t64:amd64 (2.58.0-1) ... Setting up libfabric1:amd64 (2.1.0-1.1) ... Setting up mesa-libgallium:amd64 (25.2.2-1) ... Setting up libngs-jni:amd64 (3.2.1+dfsg-5) ... Setting up libplexus-io-java (3.3.1-2) ... Setting up libcommons-compress-java (1.27.1-2) ... Setting up libcurl4t64:amd64 (8.15.0-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up libcommons-validator-java (1:1.9.0-1) ... Setting up libgbm1:amd64 (25.2.2-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblog4j2-java (2.19.0-2) ... Setting up libcurlpp0t64:amd64 (0.8.1-6) ... Setting up libgl1-mesa-dri:amd64 (25.2.2-1) ... Setting up debhelper (13.26) ... Setting up dconf-service (0.40.0-5) ... Setting up libibverbs-dev:amd64 (56.1-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libmaven-clean-plugin-java (3.2.0-2) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up cmake (4.1.1+really3.31.6-1) ... Setting up libplexus-archiver-java (4.6.1-1) ... Setting up libngs-java:amd64 (3.2.1+dfsg-5) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libglx-mesa0:amd64 (25.2.2-1) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up dconf-gsettings-backend:amd64 (0.40.0-5) ... Setting up libmaven-archiver-java (3.6.2-1) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up libamdhip64-5:amd64 (5.7.1-6) ... Setting up libcurl4-openssl-dev:amd64 (8.15.0-1) ... Setting up libcurlpp-dev:amd64 (0.8.1-6) ... Setting up libgtk-3-common (3.24.50-2) ... Setting up libucx0:amd64 (1.19.0+ds-1) ... Setting up libgtk-3-0t64:amd64 (3.24.50-2) ... Setting up libopenmpi40:amd64 (5.0.8-9) ... Setting up openmpi-bin (5.0.8-9) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (5.0.8-9) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up mpi-default-dev (1.18) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libwww-perl (6.78-1) ... Setting up devscripts (2.25.19) ... Setting up libguava-java (32.0.1-1) ... Setting up javahelper (0.81) ... Setting up libprotobuf-java (3.21.12-11) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libguice-java (5.1.0-1) ... Setting up libplexus-i18n-java (1.0-beta-10-6) ... Setting up libplexus-container-default1.5-java (2.1.1-1) ... Setting up libplexus-velocity-java (1.2-4) ... Setting up libmaven3-core-java (3.9.9-1) ... Setting up libmaven-shared-incremental-java (1.1-6) ... Setting up libmaven-shared-io-java (3.0.0-4) ... Setting up libplexus-bsh-factory-java (1.0~alpha7-5) ... Setting up libplexus-compiler-java (2.13.0-1) ... Setting up libmaven-compiler-plugin-java (3.13.0-1) ... Setting up libmaven-file-management-java (3.0.0-2) ... Setting up libbuild-helper-maven-plugin-java (3.3.0-1) ... Setting up libmaven-jar-plugin-java (3.3.0-2) ... Setting up libcommons-text-java (1.13.1-1) ... Setting up libdoxia-core-java (2.0.0-1) ... Setting up libdoxia-java (2.0.0-1) ... Setting up libmaven-reporting-api-java (4.0.0-1) ... Setting up libmaven-reporting-exec-java (2.0.0-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for systemd (258~rc4-1) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_BR_Root_CA_2_2023.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_2_2023.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up maven (3.9.9-1) ... update-alternatives: using /usr/share/maven/bin/mvn to provide /usr/bin/mvn (mvn) in auto mode Setting up openjdk-21-jre:amd64 (21.0.9~5ea-1) ... Setting up ant (1.10.15-1) ... Setting up junit4 (4.13.2-5) ... Setting up openjdk-21-jdk-headless:amd64 (21.0.9~5ea-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.21-76) ... Setting up maven-repo-helper (1.12) ... Setting up default-jre (2:1.21-76) ... Setting up libmaven-antrun-plugin-java (3.1.0-1) ... Setting up libplexus-ant-factory-java (1.0~alpha2.1-5) ... Setting up openjdk-21-jdk:amd64 (21.0.9~5ea-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up default-jdk-headless (2:1.21-76) ... Setting up junit5 (5.10.3-1) ... Setting up libjson-java (3.1.0+dfsg-2) ... Setting up libhtsjdk-java (4.1.3+dfsg-2) ... Setting up libmaven-plugin-tools-java (3.10.2-2) ... Setting up default-jdk (2:1.21-76) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up libvelocity-tools-java (2.0-9) ... Setting up libdoxia-sitetools-java (2.0.0-1) ... Setting up libmaven-site-plugin-java (3.21.0-1) ... Setting up libmaven-reporting-impl-java (4.0.0-1) ... Setting up libsurefire-java (2.22.3-4) ... Setting up maven-debian-helper (2.6.9) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/genomicsdb-1.5.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../genomicsdb_1.5.5-1_source.changes dpkg-buildpackage: info: source package genomicsdb dpkg-buildpackage: info: source version 1.5.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --with javahelper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5' # Removing the files we provided manually for the build of the component if [ -e genomicsdb-htslib/CMakeLists.txt ]; then rm genomicsdb-htslib/CMakeLists.txt; fi if [ -e genomicsdb-htslib/config.h ]; then rm genomicsdb-htslib/config.h; fi if [ -e genomicsdb-htslib/version.h ]; then rm genomicsdb-htslib/version.h; fi dh_auto_clean dh_auto_clean --buildsystem=maven bash -c "for dir in \$(find . -name target -type d); do if [ -f \$(echo \$dir | sed -e s/target\$/pom.xml/) ]; then rm -Rf \$dir; fi done" mh_unpatchpoms -plibgenomicsdb-java # Removing the debian/maven.properties file we setup during configure step. if [ -e debian/maven.properties ]; then rm debian/maven.properties; fi # Removing the patched pom.xml file. if [ -e pom.xml.old ]; then mv pom.xml.old pom.xml; fi make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' dh_autoreconf_clean -O--buildsystem=cmake jh_clean -O--buildsystem=cmake Duplicate specification "u=s" for option "u" dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake --with javahelper dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5' # Preparing the build of the htslib component. cp debian/htslibComponentFiles/* genomicsdb-htslib/ echo '#define HTS_VERSION_TEXT ""' > genomicsdb-htslib/version.h # Configuring the C++ part using CMake. dh_auto_configure -- \ -DBUILD_JAVA:BOOL=False \ -DCMAKE_INSTALL_PREFIX:PATH=/usr \ -DJAVA_HOME:PATH=/usr/lib/jvm/default-java \ -DPROTOBUF_ROOT_DIR:PATH=/usr \ -DCMAKE_LIBRARY_ARCHITECTURE:STRING=x86_64-linux-gnu cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_JAVA:BOOL=False -DCMAKE_INSTALL_PREFIX:PATH=/usr -DJAVA_HOME:PATH=/usr/lib/jvm/default-java -DPROTOBUF_ROOT_DIR:PATH=/usr -DCMAKE_LIBRARY_ARCHITECTURE:STRING=x86_64-linux-gnu .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "8.15.0") -- Looking for lzma_auto_decoder in /usr/lib/x86_64-linux-gnu/liblzma.so -- Looking for lzma_auto_decoder in /usr/lib/x86_64-linux-gnu/liblzma.so - found -- Looking for lzma_easy_encoder in /usr/lib/x86_64-linux-gnu/liblzma.so -- Looking for lzma_easy_encoder in /usr/lib/x86_64-linux-gnu/liblzma.so - found -- Looking for lzma_lzma_preset in /usr/lib/x86_64-linux-gnu/liblzma.so -- Looking for lzma_lzma_preset in /usr/lib/x86_64-linux-gnu/liblzma.so - found -- Found LibLZMA: /usr/lib/x86_64-linux-gnu/liblzma.so (found version "5.8.1") CMake Deprecation Warning at genomicsdb-tiledb/CMakeLists.txt:29 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") -- Found libuuid: /usr/include -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libcrypto.so (found version "3.5.2") -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "8.15.0") -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- The TileDB library is compiled with verbosity. -- Found Catch2: /catch2/catch_all.hpp Version=3 -- GenomicsDB version=1.5.4 full_version=1.5.4-SNAPSHOT- -- CMAKE_BUILD_TYPE=None -- Performing Test test_cpp_2011 -- Performing Test test_cpp_2011 - Success -- Performing Test test_stack_protector_strong -- Performing Test test_stack_protector_strong - Success -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test OPENMPV4_FOUND -- Performing Test OPENMPV4_FOUND - Success -- Performing Test STRING_VIEW_FOUND -- Performing Test STRING_VIEW_FOUND - Success -- string_view found -- RapidJSON found. Headers: /usr/include -- Found Spdlog: /usr/include -- Try finding Protobuf Library -- Could not find libcsv headers and/or libraries (missing: LIBCSV_LIBRARY LIBCSV_INCLUDE_DIR) -- Could not find safestring headers and/or libraries (missing: SAFESTRINGLIB_INCLUDE_DIR SAFESTRINGLIB_LIBRARY) CMake Warning (dev) at src/test/cpp/CMakeLists.txt:85 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/test/cpp/CMakeLists.txt:85 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done (3.4s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5' # Preparing the build of the htslib component. cp debian/htslibComponentFiles/* genomicsdb-htslib/ echo '#define HTS_VERSION_TEXT ""' > genomicsdb-htslib/version.h # Configuring the C++ part using CMake. dh_auto_configure -- \ -DBUILD_JAVA:BOOL=False \ -DCMAKE_INSTALL_PREFIX:PATH=/usr \ -DJAVA_HOME:PATH=/usr/lib/jvm/default-java \ -DPROTOBUF_ROOT_DIR:PATH=/usr \ -DCMAKE_LIBRARY_ARCHITECTURE:STRING=x86_64-linux-gnu cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_JAVA:BOOL=False -DCMAKE_INSTALL_PREFIX:PATH=/usr -DJAVA_HOME:PATH=/usr/lib/jvm/default-java -DPROTOBUF_ROOT_DIR:PATH=/usr -DCMAKE_LIBRARY_ARCHITECTURE:STRING=x86_64-linux-gnu .. -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "8.15.0") CMake Deprecation Warning at genomicsdb-tiledb/CMakeLists.txt:29 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "8.15.0") -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- The TileDB library is compiled with verbosity. -- Found Catch2: /catch2/catch_all.hpp Version=3 -- GenomicsDB version=1.5.4 full_version=1.5.4-SNAPSHOT- -- CMAKE_BUILD_TYPE=None -- string_view found -- RapidJSON found. Headers: /usr/include -- Try finding Protobuf Library -- Could not find libcsv headers and/or libraries (missing: LIBCSV_LIBRARY LIBCSV_INCLUDE_DIR) -- Could not find safestring headers and/or libraries (missing: SAFESTRINGLIB_INCLUDE_DIR SAFESTRINGLIB_LIBRARY) CMake Warning (dev) at src/test/cpp/CMakeLists.txt:85 (add_custom_command): The following keywords are not supported when using add_custom_command(TARGET): DEPENDS. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/test/cpp/CMakeLists.txt:85 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done (0.8s) -- Generating done (0.4s) -- Build files have been written to: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu # Configuring the Java part using Maven. # First we put the arch triplet in d/maven.properties for the tests. echo "build.triplet=x86_64-linux-gnu" > debian/maven.properties mv pom.xml pom.xml.old sed 's/\${genomicsdb\.version}/1.5.5/; s,\${protoc\.filepath},/usr/bin/protoc,' pom.xml.old > pom.xml dh_auto_configure --buildsystem=maven skip faking of existing gnu-getopt:getopt::debian mh_patchpoms -plibgenomicsdb-java --debian-build --keep-pom-version --maven-repo=/build/reproducible-path/genomicsdb-1.5.5/debian/maven-repo make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' jh_linkjars -O--buildsystem=cmake Duplicate specification "unlink|u" for option "u" debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5' dh_auto_build cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/genomicsdb-1.5.5 -B/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/depend make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/depend make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/CMakeFiles/protobuf_ep.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'CMakeFiles/protobuf_ep.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 0%] Built target protobuf_ep [ 0%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kfunc.c.o [ 1%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o [ 1%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o [ 1%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bgzf.c.o [ 1%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/array/array.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bgzf.c.o -MF CMakeFiles/genomicsdb-hts.dir/bgzf.c.o.d -o CMakeFiles/genomicsdb-hts.dir/bgzf.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/bgzf.c make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/depend [ 2%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kstring.c.o [ 3%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/errmod.c.o [ 3%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 3%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o [ 4%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kstring.c.o -MF CMakeFiles/genomicsdb-hts.dir/kstring.c.o.d -o CMakeFiles/genomicsdb-hts.dir/kstring.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/kstring.c [ 4%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/header.c.o [ 4%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/resources /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/array/array_iterator.cc [ 4%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o [ 4%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/array/array_read_state.cc [ 4%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o [ 4%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/knetfile.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hfile.c [ 4%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/faidx.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o -MF CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o.d -o CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/bcf_sr_sort.c [ 4%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts_os.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/array/array_sorted_read_state.cc [ 5%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o [ 5%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o [ 5%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/md5.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kfunc.c.o -MF CMakeFiles/genomicsdb-hts.dir/kfunc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/kfunc.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/kfunc.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc [ 6%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o [ 7%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o [ 7%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o [ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/multipart.c.o [ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/realn.c.o [ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/regidx.c.o [ 8%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/errmod.c.o -MF CMakeFiles/genomicsdb-hts.dir/errmod.c.o.d -o CMakeFiles/genomicsdb-hts.dir/errmod.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/errmod.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/knetfile.c.o -MF CMakeFiles/genomicsdb-hts.dir/knetfile.c.o.d -o CMakeFiles/genomicsdb-hts.dir/knetfile.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/knetfile.c [ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/probaln.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/header.c.o -MF CMakeFiles/genomicsdb-hts.dir/header.c.o.d -o CMakeFiles/genomicsdb-hts.dir/header.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/header.c [ 9%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/faidx.c.o -MF CMakeFiles/genomicsdb-hts.dir/faidx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/faidx.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/faidx.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hfile_libcurl.c [ 10%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o [ 10%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/region.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/array/array_schema.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hfile_net.c [ 11%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts_os.c.o -MF CMakeFiles/genomicsdb-hts.dir/hts_os.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hts_os.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hts_os.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/md5.c.o -MF CMakeFiles/genomicsdb-hts.dir/md5.c.o.d -o CMakeFiles/genomicsdb-hts.dir/md5.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/md5.c [ 11%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/sam.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/array/array_sorted_write_state.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/multipart.c.o -MF CMakeFiles/genomicsdb-hts.dir/multipart.c.o.d -o CMakeFiles/genomicsdb-hts.dir/multipart.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/multipart.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb_utils.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/probaln.c.o -MF CMakeFiles/genomicsdb-hts.dir/probaln.c.o.d -o CMakeFiles/genomicsdb-hts.dir/probaln.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/probaln.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts.c.o -MF CMakeFiles/genomicsdb-hts.dir/hts.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hts.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hts.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/realn.c.o -MF CMakeFiles/genomicsdb-hts.dir/realn.c.o.d -o CMakeFiles/genomicsdb-hts.dir/realn.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/realn.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec_blosc.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/regidx.c.o -MF CMakeFiles/genomicsdb-hts.dir/regidx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/regidx.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/regidx.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec_filter.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec_filter_bit_shuffle.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/region.c.o -MF CMakeFiles/genomicsdb-hts.dir/region.c.o.d -o CMakeFiles/genomicsdb-hts.dir/region.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/region.c [ 11%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o [ 11%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/sam.c.o -MF CMakeFiles/genomicsdb-hts.dir/sam.c.o.d -o CMakeFiles/genomicsdb-hts.dir/sam.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/sam.c [ 12%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec_filter_delta_encode.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec_gzip.cc [ 12%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o [ 12%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec_lz4.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o -MF CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o.d -o CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/synced_bcf_reader.c [ 13%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o [ 13%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o -MF CMakeFiles/genomicsdb-hts.dir/tbx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/tbx.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/tbx.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec_rle.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec_zstd.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle/bitshuffle_core.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/vcf_sweep.c make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 13%] Generating source/header files from .proto files cd /build/reproducible-path/genomicsdb-1.5.5/src/resources && /usr/bin/protoc --cpp_out=/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources genomicsdb_coordinates.proto genomicsdb_callsets_mapping.proto genomicsdb_export_config.proto genomicsdb_import_config.proto genomicsdb_vid_mapping.proto [ 13%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle/iochain.c [ 13%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/expressions/expression.cc [ 14%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/fragment/book_keeping.cc [ 14%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o [ 14%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/fragment/read_state.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/fragment/fragment.cc /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hfile_libcurl.c: In function 'libcurl_open': /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hfile_libcurl.c:1335:9: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1335 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hfile_libcurl.c:47: /usr/include/x86_64-linux-gnu/curl/curl.h:2923:3: note: declared here 2923 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o [ 15%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/fragment/write_state.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/metadata/metadata.cc [ 15%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o [ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o -MF CMakeFiles/genomicsdb-hts.dir/textutils.c.o.d -o CMakeFiles/genomicsdb-hts.dir/textutils.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/textutils.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o -MF CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o.d -o CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/thread_pool.c make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcf.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcf.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/vcf.c [ 16%] Built target PROTOBUF_GENERATED_CXX_TARGET [ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/vcfutils.c make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/DependInfo.cmake "--color=" [ 16%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/metadata/metadata_iterator.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 16%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations.cc [ 16%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc [ 16%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations_columnar.cc [ 17%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf_columnar.cc [ 17%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc [ 18%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_codecs.c [ 18%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_cell.cc [ 19%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_storage_manager.cc [ 19%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_field_data.cc [ 20%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/error.cc [ 20%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_array_schema.cc [ 21%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_field_handler.cc [ 21%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant.cc [ 21%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/hilbert_curve.cc [ 21%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/mem_utils.cc [ 21%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_decode.c [ 21%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_encode.c [ 21%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/query_variants.cc [ 22%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc [ 22%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc [ 22%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_external.c [ 23%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_index.c [ 23%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_cell.cc:23: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 23%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_io.c [ 24%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/progress_bar.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations_columnar.cc:23: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 24%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader_text_file.cc [ 25%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o [ 25%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/load_operators.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/genomicsdb_importer.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_array_schema.cc:25: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_array_schema.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_array_schema.cc:24: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 25%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader_file_base.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_field_data.cc:23: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_construct.h:61, from /usr/include/c++/15/bits/stl_tempbuf.h:61, from /usr/include/c++/15/memory:68, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 25%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/uri.cc /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc: In function 'int tiledb_array_set_schema(TileDB_ArraySchema*, const char*, const char**, int, int64_t, int, const int*, const int*, const int*, const int*, const int*, int, const char**, int, const void*, size_t, const void*, size_t, int, const int*)': /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc:409:22: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 409 | (int*) malloc((attribute_num)*sizeof(int)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/cstdlib:83, from /usr/include/c++/15/ext/string_conversions.h:45, from /usr/include/c++/15/bits/basic_string.h:4444, from /usr/include/c++/15/string:56, from /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api/tiledb.h:44, from /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc:36: /usr/include/stdlib.h:672:14: note: in a call to allocation function 'void* malloc(size_t)' declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc:440:62: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 440 | tiledb_array_schema->offsets_compression_ = (int*) malloc((attribute_num)*sizeof(int)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:672:14: note: in a call to allocation function 'void* malloc(size_t)' declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc:440:62: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 440 | tiledb_array_schema->offsets_compression_ = (int*) malloc((attribute_num)*sizeof(int)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:672:14: note: in a call to allocation function 'void* malloc(size_t)' declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc:448:68: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 448 | tiledb_array_schema->offsets_compression_level_ = (int*) malloc((attribute_num)*sizeof(int)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:672:14: note: in a call to allocation function 'void* malloc(size_t)' declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc:448:68: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 448 | tiledb_array_schema->offsets_compression_level_ = (int*) malloc((attribute_num)*sizeof(int)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:672:14: note: in a call to allocation function 'void* malloc(size_t)' declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc:440:62: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 440 | tiledb_array_schema->offsets_compression_ = (int*) malloc((attribute_num)*sizeof(int)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:672:14: note: in a call to allocation function 'void* malloc(size_t)' declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf_columnar.cc:23: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:25: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/gt_remapper.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/gt_remapper_template_definition.h:25, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:23: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_storage_manager.cc:25: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:28: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 25%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_samtools.c In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant.cc:23: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:25: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_field_handler.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 25%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/utils.cc [ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc:23: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/memory_measure.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 27%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_stats.c [ 27%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/histogram.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/query_variants.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/query_variants.cc:23: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper_pb.cc /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc: In function 'int tiledb_metadata_set_schema(TileDB_MetadataSchema*, const char*, const char**, int, int64_t, const int*, const int*, const int*, const int*)': /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc:1131:22: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 1131 | (int*) malloc((attribute_num)*sizeof(int)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:672:14: note: in a call to allocation function 'void* malloc(size_t)' declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ [ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/lut.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/load_operators.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/vid_mapper.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/known_field_info.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/vid_mapper.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:23: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 28%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/mFILE.c In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader_text_file.cc:32: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader_file_base.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader_text_file.h:33, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader_text_file.cc:30: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 29%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc [ 30%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_buffer.cc [ 30%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/open_trace_file.c In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/genomicsdb_importer.h:25, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/genomicsdb_importer.cc:23: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/vid_mapper.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:27: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o [ 31%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/pooled_alloc.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper_sql.cc [ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/timer.cc [ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/genomicsdb_logger.cc [ 31%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/rANS_static.c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations.cc: In member function 'virtual void AlleleCountOperator::operate_on_columnar_cell(const GenomicsDBColumnarCell&, const VariantQueryConfig&, const VariantArraySchema&)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations.cc:984:36: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 984 | auto REF_ALT_pair = std::move(std::pair( | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 985 | std::string(REF_ptr, REF_length), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 986 | std::string(ALT_ptr+m_cell_ALT_offsets[ALT_idx], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 987 | m_cell_ALT_offsets[ALT_idx+1]-m_cell_ALT_offsets[ALT_idx]-1))); //-1 to ignore delim char | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations.cc:984:36: note: remove 'std::move' call [ 31%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/string_alloc.c [ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc: In member function 'void BroadCombinedGVCFOperator::handle_INFO_fields(const Variant&)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:622:37: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 622 | auto stringified = std::move(m_field_handlers[bcf_ht_type]->stringify_2D_vector(*(BCF_INFO_GET_FIELD_INFO_PTR(curr_tuple)))); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:622:37: note: remove 'std::move' call /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:643:34: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 643 | auto result_str = std::move( | ~~~~~~~~~^ 644 | GET_HISTOGRAM_FIELD_HANDLER_PTR_FROM_TUPLE(curr_INFO_histogram_tuple)->stringify_histogram( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 | length_descriptor.get_vcf_delimiter(0u), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 | length_descriptor.get_vcf_delimiter(1u) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 | )); | ~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:643:34: note: remove 'std::move' call /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc: In member function 'void BroadCombinedGVCFOperator::handle_deletions(Variant&)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:1106:37: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 1106 | auto null_PL_ptr = std::move(std::unique_ptr(nullptr)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:1106:37: note: remove 'std::move' call [ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/vcf_adapter.cc [ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc [ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/vcf2binary.cc [ 33%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_fs.cc [ 33%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_manager.cc [ 33%] Building C object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/cc -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/hfile_genomicsdb.c [ 33%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_manager_config.cc [ 34%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_posixfs.cc /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc: In member function 'std::vector GenomicsDBMultiDVectorField::parse_and_store_numeric(const char*, size_t)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:436:50: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 436 | auto total_size_of_multi_d_data_vec = std::move(GenomicsDBMultiDVectorField::parse_and_store_numeric( | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 | m_rw_field_data, *m_field_info_ptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 | str, str_length)); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:436:50: note: remove 'std::move' call [ 34%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/htslib_fs_adapter.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/known_field_info.cc:27: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/known_field_info.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/known_field_info.cc:24: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader.cc:27: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_algobase.h:65, from /usr/include/c++/15/bits/specfun.h:43, from /usr/include/c++/15/cmath:3913, from /usr/include/fmt/format.h:36, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader.cc:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 34%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4/lz4.c [ 35%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/variant_query_config.cc [ 35%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/genomicsdb_config_base.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc:33: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/vid_mapper.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/alleles_combiner.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/alleles_combiner_template_definition.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc:23: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 35%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/json_config.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc:23: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/pb_config.cc [ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/annotation_service.cc /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc: In member function 'void VidMapper::parse_string_length_descriptor(const char*, const char*, size_t, FieldLengthDescriptor&, size_t)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc:757:47: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 757 | auto length_value_upper_case_str = std::move(std::string(length_value_str)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc:757:47: note: remove 'std::move' call /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc: In member function 'void FileBasedVidMapper::common_constructor_initialization(const rapidjson::Value&)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc:1269:40: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 1269 | auto class_name = std::move(std::string(vcf_field_class_array[i].GetString())); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc:1269:40: note: remove 'std::move' call [ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/vcf2binary.cc:29: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/vcf2binary.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/vcf2binary.cc:24: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 37%] Linking C shared library libgenomicsdb-hts.so cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdb-hts.dir/link.txt --verbose=1 [ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb_field.cc /usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/genomicsdb-hts.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgenomicsdb-hts.so -o libgenomicsdb-hts.so "CMakeFiles/genomicsdb-hts.dir/kfunc.c.o" "CMakeFiles/genomicsdb-hts.dir/knetfile.c.o" "CMakeFiles/genomicsdb-hts.dir/kstring.c.o" "CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o" "CMakeFiles/genomicsdb-hts.dir/bgzf.c.o" "CMakeFiles/genomicsdb-hts.dir/errmod.c.o" "CMakeFiles/genomicsdb-hts.dir/faidx.c.o" "CMakeFiles/genomicsdb-hts.dir/header.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o" "CMakeFiles/genomicsdb-hts.dir/hts.c.o" "CMakeFiles/genomicsdb-hts.dir/hts_os.c.o" "CMakeFiles/genomicsdb-hts.dir/md5.c.o" "CMakeFiles/genomicsdb-hts.dir/multipart.c.o" "CMakeFiles/genomicsdb-hts.dir/probaln.c.o" "CMakeFiles/genomicsdb-hts.dir/realn.c.o" "CMakeFiles/genomicsdb-hts.dir/regidx.c.o" "CMakeFiles/genomicsdb-hts.dir/region.c.o" "CMakeFiles/genomicsdb-hts.dir/sam.c.o" "CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o" "CMakeFiles/genomicsdb-hts.dir/tbx.c.o" "CMakeFiles/genomicsdb-hts.dir/textutils.c.o" "CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf.c.o" "CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o" /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/liblzma.so make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 38%] Built target genomicsdb-hts [ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb_plink.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/variant_query_config.cc:26: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_algobase.h:65, from /usr/include/c++/15/algorithm:62, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/variant_query_config.cc:24: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb_utils.cc [ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb_json_processor.cc /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/genomicsdb_config_base.cc: In member function 'const bool GenomicsDBConfigBase::has_array_name(int) const': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/genomicsdb_config_base.cc:101:53: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'const int' [-Wsign-compare] 101 | (!m_single_array_name && m_array_names.size() > rank)) { | ~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/json_config.cc: In member function 'rapidjson::Document GenomicsDBConfigBase::read_from_file(const std::string&, int)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/json_config.cc:193:43: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 193 | rapidjson::Document json_doc = std::move(parse_json_file(filename)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/json_config.cc:193:43: note: remove 'std::move' call /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/json_config.cc: In member function 'void GenomicsDBImportConfig::read_from_file(const std::string&, int)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/json_config.cc:704:43: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 704 | rapidjson::Document json_doc = std::move(GenomicsDBConfigBase::read_from_file(filename, rank)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/json_config.cc:704:43: note: remove 'std::move' call In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc:46: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api/genomicsdb_exception.h:37, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api/genomicsdb.h:37, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc:34: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_coordinates.pb.cc [ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_callsets_mapping.pb.cc [ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_export_config.pb.cc [ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_import_config.pb.cc [ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_vid_mapping.pb.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb_plink.cc:40: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api/genomicsdb_exception.h:37, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api/genomicsdb.h:37, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api/genomicsdb_plink.h:35, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb_plink.cc:34: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 40%] Built target TILEDB_CORE_OBJECTS make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/depend make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 41%] Linking CXX shared library libgenomicsdb-tiledb.so cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_shared.dir/link.txt --verbose=1 [ 41%] Linking CXX static library libgenomicsdb-tiledb.a cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -P CMakeFiles/tiledb_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_static.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,--dependency-file=CMakeFiles/tiledb_shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgenomicsdb-tiledb.so -o libgenomicsdb-tiledb.so CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 41%] Built target tiledb_shared /usr/bin/ar qc libgenomicsdb-tiledb.a CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o /usr/bin/ranlib libgenomicsdb-tiledb.a make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 41%] Built target tiledb_static make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build [ 41%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -MF CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o.d -o CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc [ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o [ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o [ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -MF CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o.d -o CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/c_api/test_sparse_array_api.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -MF CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o.d -o CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/benchmark/test_print_array_schema.cc [ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o [ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -MF CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o.d -o CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/array/test_array_schema.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -MF CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o.d -o CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc [ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -MF CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o.d -o CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/expressions/test_expressions.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -MF CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o.d -o CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/codec/test_codec_filter.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -MF CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o.d -o CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/c_api/test_tiledb_utils.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -MF CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o.d -o CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/benchmark/test_print_book_keeping.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 44%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o [ 44%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o [ 44%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -MF CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o.d -o CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/expressions/test_filter_api.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -MF CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o.d -o CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/benchmark/test_sparse_array_benchmark.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -MF CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o.d -o CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/c_api/test_dense_array_api.cc [ 44%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o [ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -MF CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o.d -o CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/codec/test_codec.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -MF CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o.d -o CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc [ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o [ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -MF CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o.d -o CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/storage_manager/test_storage_buffer.cc [ 46%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o [ 46%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -MF CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o.d -o CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_mem_utils.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o -MF CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o.d -o CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/storage_manager/test_posixfs.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -MF CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o.d -o CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_uri.cc make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 46%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o -MF CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o.d -o CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_3d.cc make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 46%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -MF CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o.d -o CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_aio_read_dense.cc [ 47%] Linking CXX executable tiledb_array_3d cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_3d.dir/link.txt --verbose=1 [ 48%] Linking CXX executable test_print_array_schema cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_array_schema.dir/link.txt --verbose=1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/DependInfo.cmake "--color=" [ 48%] Linking CXX executable tiledb_array_aio_read_dense cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_aio_read_dense.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -MF CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o.d -o CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_aio_write_dense.cc make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -MF CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o.d -o CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_consolidate.cc make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -MF CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o.d -o CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_create_dense.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_3d.dir/link.d CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o -o tiledb_array_3d ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 49%] Built target tiledb_array_3d make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -MF CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o.d -o CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_create_sparse.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_print_array_schema.dir/link.d CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -o test_print_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 49%] Linking CXX executable tiledb_array_aio_write_dense cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_aio_write_dense.dir/link.txt --verbose=1 [ 49%] Built target test_print_array_schema make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 49%] Linking CXX executable test_print_book_keeping cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_book_keeping.dir/link.txt --verbose=1 [ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -MF CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o.d -o CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_iterator_dense.cc [ 50%] Linking CXX executable tiledb_array_consolidate cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_consolidate.dir/link.txt --verbose=1 [ 51%] Linking CXX executable tiledb_array_create_sparse cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_sparse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_aio_read_dense.dir/link.d CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -o tiledb_array_aio_read_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 51%] Built target tiledb_array_aio_read_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 52%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -MF CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o.d -o CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_iterator_sparse.cc [ 52%] Linking CXX executable tiledb_array_create_dense cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_dense.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_aio_write_dense.dir/link.d CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -o tiledb_array_aio_write_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 52%] Linking CXX executable tiledb_array_iterator_dense cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_dense.dir/link.txt --verbose=1 [ 52%] Built target tiledb_array_aio_write_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 52%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -MF CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o.d -o CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_iterator_sparse_filter.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_print_book_keeping.dir/link.d CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -o test_print_book_keeping ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 52%] Built target test_print_book_keeping make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/DependInfo.cmake "--color=" [ 52%] Linking CXX executable tiledb_array_iterator_sparse /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_create_sparse.dir/link.d CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -o tiledb_array_create_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_sparse.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 52%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -MF CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o.d -o CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_consolidate_dense.cc [ 52%] Built target tiledb_array_create_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 53%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -MF CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o.d -o CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_consolidate_sparse.cc make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_consolidate.dir/link.d CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -o tiledb_array_consolidate ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 53%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -MF CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_dense_1.cc [ 53%] Built target tiledb_array_consolidate make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 54%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -MF CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_dense_2.cc [ 55%] Linking CXX executable tiledb_array_iterator_sparse_filter cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_iterator_dense.dir/link.d CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -o tiledb_array_iterator_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' In file included from /usr/include/c++/15/bits/basic_string.h:51, from /usr/include/c++/15/string:56: In function 'constexpr std::size_t std::__sv_check(size_t, size_t, const char*)', inlined from 'constexpr std::basic_string_view<_CharT, _Traits> std::basic_string_view<_CharT, _Traits>::substr(size_type, size_type) const [with _CharT = char; _Traits = std::char_traits]' at /usr/include/c++/15/string_view:340:25, inlined from 'std::string_view get_segment(std::string_view, int)' at /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc:819:20: /usr/include/c++/15/string_view:74:5: warning: 'pos' may be used uninitialized [-Wmaybe-uninitialized] 74 | if (__pos > __size) | ^~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc: In function 'std::string_view get_segment(std::string_view, int)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc:806:26: note: 'pos' was declared here 806 | std::string::size_type pos; | ^~~ [ 55%] Built target tiledb_array_iterator_dense [ 55%] Linking CXX executable tiledb_array_parallel_consolidate_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 55%] Linking CXX executable tiledb_array_parallel_consolidate_sparse cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.txt --verbose=1 [ 55%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -MF CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_mpi_io_dense.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_iterator_sparse.dir/link.d CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -o tiledb_array_iterator_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 55%] Built target tiledb_array_iterator_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 55%] Linking CXX executable tiledb_array_parallel_read_dense_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_dense_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_create_dense.dir/link.d CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -o tiledb_array_create_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 55%] Built target tiledb_array_create_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/DependInfo.cmake "--color=" [ 55%] Linking CXX executable tiledb_array_parallel_read_dense_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build [ 55%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -MF CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_sparse_1.cc [ 56%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -MF CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_sparse_2.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/link.d CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -o tiledb_array_parallel_consolidate_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.d CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -o tiledb_array_iterator_sparse_filter ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 56%] Linking CXX executable tiledb_array_parallel_read_sparse_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.txt --verbose=1 [ 56%] Built target tiledb_array_iterator_sparse_filter make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/depend [ 57%] Linking CXX executable tiledb_array_parallel_read_mpi_io_dense make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.txt --verbose=1 [ 57%] Built target tiledb_array_parallel_consolidate_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.d CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -o tiledb_array_parallel_consolidate_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -MF CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_dense_2.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_dense_1.dir/link.d CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -o tiledb_array_parallel_read_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx [ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -MF CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_dense_1.cc [ 57%] Linking CXX executable tiledb_array_parallel_read_sparse_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.txt --verbose=1 [ 57%] Built target tiledb_array_parallel_consolidate_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/DependInfo.cmake "--color=" [ 57%] Built target tiledb_array_parallel_read_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.d CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -o tiledb_array_parallel_read_mpi_io_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -MF CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_sparse_2.cc [ 57%] Built target tiledb_array_parallel_read_mpi_io_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/DependInfo.cmake "--color=" [ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_sparse_1.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/DependInfo.cmake "--color=" [ 58%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -MF CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o.d -o CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_primitive.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 58%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.d CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -o tiledb_array_parallel_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -MF CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o.d -o CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_1.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 58%] Built target tiledb_array_parallel_read_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 58%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -MF CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o.d -o CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_2.cc make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 59%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -MF CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o.d -o CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_3.cc [ 60%] Linking CXX executable tiledb_array_parallel_write_dense_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.txt --verbose=1 [ 60%] Linking CXX executable tiledb_array_parallel_write_sparse_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.txt --verbose=1 [ 60%] Linking CXX executable tiledb_array_parallel_write_dense_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.d CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -o tiledb_array_parallel_read_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx [ 60%] Linking CXX executable test_mem_utils make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mem_utils.dir/link.txt --verbose=1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/DependInfo.cmake "--color=" [ 60%] Built target tiledb_array_parallel_read_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 60%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -MF CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o.d -o CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_sorted.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 60%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -MF CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_1.cc [ 61%] Linking CXX executable tiledb_array_parallel_write_sparse_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.d CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -o tiledb_array_parallel_read_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 61%] Built target tiledb_array_parallel_read_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 62%] Linking CXX executable tiledb_array_read_dense_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_1.dir/link.txt --verbose=1 [ 62%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -MF CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_2.cc [ 62%] Linking CXX executable tiledb_array_primitive cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_primitive.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_mem_utils.dir/link.d CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -o test_mem_utils ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 62%] Built target test_mem_utils [ 62%] Linking CXX executable tiledb_array_read_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_2.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 62%] Linking CXX executable tiledb_array_read_dense_3 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_3.dir/link.txt --verbose=1 [ 62%] Linking CXX executable test_array_schema cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema.dir/link.txt --verbose=1 [ 62%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -MF CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_1.cc [ 63%] Linking CXX executable tiledb_array_read_dense_sorted cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_sorted.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.d CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -o tiledb_array_parallel_write_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 63%] Built target tiledb_array_parallel_write_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/DependInfo.cmake "--color=" /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.d CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -o tiledb_array_parallel_write_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.d CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -o tiledb_array_parallel_write_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 64%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -MF CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_2.cc [ 64%] Linking CXX executable tiledb_array_read_sparse_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_1.dir/link.txt --verbose=1 [ 64%] Built target tiledb_array_parallel_write_sparse_2 [ 64%] Built target tiledb_array_parallel_write_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/DependInfo.cmake "--color=" [ 65%] Linking CXX executable test_codec cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 65%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -MF CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o.d -o CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_update_dense_1.cc [ 65%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -MF CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_sorted.cc [ 66%] Linking CXX executable tiledb_array_read_sparse_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_1.dir/link.d CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -o tiledb_array_read_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.d CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -o tiledb_array_parallel_write_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 66%] Built target tiledb_array_read_dense_1 [ 66%] Built target tiledb_array_parallel_write_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/DependInfo.cmake "--color=" [ 66%] Linking CXX executable tiledb_array_read_sparse_filter_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -MF CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_update_sparse_1.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_2.dir/link.d CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -o tiledb_array_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 67%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -MF CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o.d -o CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_update_dense_2.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_primitive.dir/link.d CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -o tiledb_array_primitive ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 67%] Built target tiledb_array_read_dense_2 [ 67%] Built target tiledb_array_primitive make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 67%] Linking CXX executable tiledb_array_read_sparse_filter_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.txt --verbose=1 [ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o [ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -MF CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_update_sparse_2.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -MF CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o.d -o CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_1.cc make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/DependInfo.cmake "--color=" /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_array_schema.dir/link.d CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -o test_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_3.dir/link.d CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -o tiledb_array_read_dense_3 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 68%] Built target test_array_schema make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/DependInfo.cmake "--color=" [ 68%] Built target tiledb_array_read_dense_3 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/depend [ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -MF CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o.d -o CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_2.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_sorted.dir/link.d CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -o tiledb_array_read_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 68%] Built target tiledb_array_read_dense_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/DependInfo.cmake "--color=" [ 69%] Linking CXX executable tiledb_array_read_sparse_sorted [ 69%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_1.cc [ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -MF CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o.d -o CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_sorted.cc make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/DependInfo.cmake "--color=" [ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -MF CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_2.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_1.dir/link.d CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -o tiledb_array_read_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o [ 70%] Built target tiledb_array_read_sparse_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -MF CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_3.cc make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 70%] Linking CXX executable test_codec_filter cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec_filter.dir/link.txt --verbose=1 [ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -MF CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_4.cc [ 70%] Linking CXX executable tiledb_array_update_dense_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_codec.dir/link.d CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -o test_codec ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_2.dir/link.d CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -o tiledb_array_read_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 70%] Built target test_codec make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/DependInfo.cmake "--color=" [ 70%] Built target tiledb_array_read_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 70%] Linking CXX executable tiledb_array_update_dense_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_2.dir/link.txt --verbose=1 [ 70%] Linking CXX executable tiledb_array_update_sparse_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_sparse_1.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 71%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -MF CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o.d -o CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_catching_errors.cc [ 71%] Linking CXX executable tiledb_array_update_sparse_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.d CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -o tiledb_array_read_sparse_filter_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx [ 71%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -MF CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o.d -o CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_clear_delete_move.cc [ 72%] Linking CXX executable tiledb_array_write_dense_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_1.dir/link.txt --verbose=1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/DependInfo.cmake "--color=" [ 72%] Built target tiledb_array_read_sparse_filter_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 72%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_codec_filter.dir/link.d CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -o test_codec_filter ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -MF CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o.d -o CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_config.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 73%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -MF CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o.d -o CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_delete.cc [ 73%] Built target test_codec_filter make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 73%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -MF CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o.d -o CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_ls.cc [ 74%] Linking CXX executable tiledb_array_write_sparse_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_1.dir/link.txt --verbose=1 [ 74%] Linking CXX executable tiledb_array_write_dense_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_2.dir/link.txt --verbose=1 [ 74%] Linking CXX executable tiledb_array_write_sparse_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.d CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -o tiledb_array_read_sparse_filter_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 74%] Built target tiledb_array_read_sparse_filter_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/DependInfo.cmake "--color=" [ 75%] Linking CXX executable tiledb_array_write_sparse_3 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_3.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 75%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -MF CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o.d -o CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_ls_workspaces.cc [ 75%] Linking CXX executable tiledb_array_write_sparse_4 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.d CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -o tiledb_array_read_sparse_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 75%] Built target tiledb_array_read_sparse_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/DependInfo.cmake "--color=" [ 75%] Linking CXX executable tiledb_array_write_dense_sorted cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_sorted.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 75%] Linking CXX executable tiledb_catching_errors [ 75%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -MF CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o.d -o CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_consolidate.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_catching_errors.dir/link.txt --verbose=1 [ 75%] Linking CXX executable test_filter_api cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_filter_api.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_dense_1.dir/link.d CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -o tiledb_array_update_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 75%] Built target tiledb_array_update_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 75%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -MF CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o.d -o CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_create.cc [ 76%] Linking CXX executable tiledb_clear_delete_move cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_clear_delete_move.dir/link.txt --verbose=1 [ 76%] Linking CXX executable tiledb_config cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_config.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_sparse_1.dir/link.d CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -o tiledb_array_update_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_dense_2.dir/link.d CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -o tiledb_array_update_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 76%] Built target tiledb_array_update_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/DependInfo.cmake "--color=" /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_dense_1.dir/link.d CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -o tiledb_array_write_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build [ 76%] Built target tiledb_array_update_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/DependInfo.cmake "--color=" /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_sparse_2.dir/link.d CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -o tiledb_array_update_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 77%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -MF CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o.d -o CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_iterator.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 78%] Linking CXX executable tiledb_ls cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_ls.dir/link.txt --verbose=1 [ 78%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -MF CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o.d -o CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_primitive.cc [ 78%] Built target tiledb_array_write_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/depend [ 78%] Built target tiledb_array_update_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 79%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -MF CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o.d -o CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_update.cc [ 80%] Linking CXX executable tiledb_metadata_consolidate cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_consolidate.dir/link.txt --verbose=1 [ 80%] Linking CXX executable tiledb_ls_workspaces /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_2.dir/link.d CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -o tiledb_array_write_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_ls_workspaces.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 80%] Linking CXX executable tiledb_delete cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_delete.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_dense_2.dir/link.d CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -o tiledb_array_write_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_1.dir/link.d CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -o tiledb_array_write_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx [ 80%] Built target tiledb_array_write_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 80%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -MF CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o.d -o CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_read.cc make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/DependInfo.cmake "--color=" [ 80%] Built target tiledb_array_write_dense_2 [ 80%] Built target tiledb_array_write_sparse_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 80%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -MF CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o.d -o CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_write.cc [ 80%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_4.dir/link.d CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -o tiledb_array_write_sparse_4 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -MF CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o.d -o CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_workspace_group_create.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_3.dir/link.d CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -o tiledb_array_write_sparse_3 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 80%] Built target tiledb_array_write_sparse_4 [ 80%] Built target tiledb_array_write_sparse_3 [ 80%] Linking CXX executable tiledb_metadata_create cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_create.dir/link.txt --verbose=1 In file included from /usr/include/string.h:548, from /usr/include/c++/15/cstring:48, from /usr/include/catch2/internal/catch_stringref.hpp:16, from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:13, from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, from /usr/include/catch2/catch_all.hpp:25, from /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2/catch.h:39, from /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:39: In function 'void* memcpy(void*, const void*, size_t)', inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:184:11: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:10: note: source object 'j' of size 8 181 | double j = 0.1, k = 0.2; | ^ In function 'void* memcpy(void*, const void*, size_t)', inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:186:11: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:19: note: source object 'k' of size 8 181 | double j = 0.1, k = 0.2; | ^ In function 'void* memcpy(void*, const void*, size_t)', inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:191:11: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:10: note: source object 'j' of size 8 181 | double j = 0.1, k = 0.2; | ^ In function 'void* memcpy(void*, const void*, size_t)', inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:192:11: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:19: note: source object 'k' of size 8 181 | double j = 0.1, k = 0.2; | ^ In function 'void* memcpy(void*, const void*, size_t)', inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:196:11: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:10: note: source object 'j' of size 8 181 | double j = 0.1, k = 0.2; | ^ In function 'void* memcpy(void*, const void*, size_t)', inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:198:11: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:19: note: source object 'k' of size 8 181 | double j = 0.1, k = 0.2; | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_dense_sorted.dir/link.d CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -o tiledb_array_write_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_catching_errors.dir/link.d CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -o tiledb_catching_errors ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 80%] Built target tiledb_array_write_dense_sorted [ 80%] Built target tiledb_catching_errors [ 80%] Linking CXX executable tiledb_metadata_iterator cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_iterator.dir/link.txt --verbose=1 [ 81%] Linking CXX executable tiledb_metadata_primitive cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_primitive.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_config.dir/link.d CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -o tiledb_config ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_filter_api.dir/link.d CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -o test_filter_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 81%] Built target tiledb_config [ 81%] Built target test_filter_api /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_ls.dir/link.d CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -o tiledb_ls ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 81%] Built target tiledb_ls /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_clear_delete_move.dir/link.d CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -o tiledb_clear_delete_move ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 81%] Built target tiledb_clear_delete_move [ 81%] Linking CXX executable tiledb_metadata_update cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_update.dir/link.txt --verbose=1 [ 81%] Linking CXX executable tiledb_metadata_read cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_read.dir/link.txt --verbose=1 [ 81%] Linking CXX executable tiledb_metadata_write cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_write.dir/link.txt --verbose=1 [ 82%] Linking CXX executable tiledb_workspace_group_create cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_workspace_group_create.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_delete.dir/link.d CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -o tiledb_delete ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 82%] Built target tiledb_delete [ 82%] Linking CXX executable test_uri cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_uri.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_ls_workspaces.dir/link.d CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -o tiledb_ls_workspaces ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_create.dir/link.d CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -o tiledb_metadata_create ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 82%] Built target tiledb_ls_workspaces [ 82%] Built target tiledb_metadata_create /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_consolidate.dir/link.d CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -o tiledb_metadata_consolidate ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 82%] Built target tiledb_metadata_consolidate /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_primitive.dir/link.d CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -o tiledb_metadata_primitive ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 82%] Built target tiledb_metadata_primitive /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_iterator.dir/link.d CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -o tiledb_metadata_iterator ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 82%] Built target tiledb_metadata_iterator /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_uri.dir/link.d CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -o test_uri ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 82%] Built target test_uri /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_workspace_group_create.dir/link.d CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -o tiledb_workspace_group_create ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 82%] Built target tiledb_workspace_group_create /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_write.dir/link.d CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -o tiledb_metadata_write ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 82%] Built target tiledb_metadata_write /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_update.dir/link.d CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -o tiledb_metadata_update ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 82%] Built target tiledb_metadata_update /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_read.dir/link.d CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -o tiledb_metadata_read ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 82%] Built target tiledb_metadata_read In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:11, from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, from /usr/include/catch2/catch_all.hpp:25, from /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2/catch.h:39, from /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/benchmark/test_sparse_array_benchmark.cc:34: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::__cxx11::basic_string]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::__cxx11::basic_string]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]' at /usr/include/c++/15/bits/stl_vector.h:396:19, inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]' at /usr/include/c++/15/bits/stl_vector.h:392:7, inlined from 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]' at /usr/include/c++/15/bits/stl_vector.h:375:15, inlined from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = std::__cxx11::basic_string; _Alloc = std::allocator >]' at /usr/include/c++/15/bits/stl_vector.h:805:7, inlined from 'std::string readable_size(size_t, bool)' at /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark/tiledb_benchmark.h:496:3: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on pointer '__result' with nonzero offset 32 [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/benchmark/test_sparse_array_benchmark.cc:36: /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark/tiledb_benchmark.h: In function 'std::string readable_size(size_t, bool)': /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark/tiledb_benchmark.h:483:13: note: declared here 483 | std::string readable_size(size_t size, bool human_readable_sizes) { | ^~~~~~~~~~~~~ [ 83%] Linking CXX executable test_array_iterator cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_iterator.dir/link.txt --verbose=1 [ 83%] Linking CXX executable test_storage_buffer cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_storage_buffer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_array_iterator.dir/link.d CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -o test_array_iterator ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 83%] Built target test_array_iterator [ 83%] Linking CXX executable test_utils cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_utils.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_storage_buffer.dir/link.d CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -o test_storage_buffer ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 83%] Built target test_storage_buffer /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_utils.dir/link.d CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -o test_utils ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 83%] Built target test_utils [ 84%] Linking CXX executable test_dense_array_api cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_dense_array_api.dir/link.txt --verbose=1 [ 84%] Linking CXX executable test_array_schema_api cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema_api.dir/link.txt --verbose=1 [ 85%] Linking CXX executable test_sparse_array_benchmark cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sparse_array_benchmark.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_dense_array_api.dir/link.d CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -o test_dense_array_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 85%] Built target test_dense_array_api [ 86%] Linking CXX executable test_tiledb_utils cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tiledb_utils.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 86%] Built target GenomicsDB_library_object_files make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/depend make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdb.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/build make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 86%] Linking CXX shared library libgenomicsdb.so [ 86%] Linking CXX static library libgenomicsdb.a cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -P CMakeFiles/genomicsdb.dir/cmake_clean_target.cmake cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledbgenomicsdb.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,--dependency-file=CMakeFiles/tiledbgenomicsdb.dir/link.d -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -shared -Wl,-soname,libgenomicsdb.so.1 -o libgenomicsdb.so.1.5.4 CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o CMakeFiles/GenomicsDB_library_objecd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdb.dir/link.txt --verbose=1 /usr/bin/ar qc libgenomicsdb.a CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_array_schema_api.dir/link.d CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -o test_array_schema_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 86%] Built target test_array_schema_api [ 86%] Linking CXX executable test_posixfs cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_posixfs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_sparse_array_benchmark.dir/link.d CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -o test_sparse_array_benchmark ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 86%] Built target test_sparse_array_benchmark /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_tiledb_utils.dir/link.d CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -o test_tiledb_utils ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 86%] Built target test_tiledb_utils /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_posixfs.dir/link.d CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o -o test_posixfs ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 86%] Built target test_posixfs ct_files.dir/cpp/src/api/genomicsdb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core: /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl ../../genomicsdb-htslib/libgenomicsdb-hts.so ../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/liblzma.so cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -E cmake_symlink_library libgenomicsdb.so.1.5.4 libgenomicsdb.so.1 libgenomicsdb.so make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 86%] Built target tiledbgenomicsdb make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 86%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o [ 86%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o [ 86%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBQuery.cc [ 87%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o [ 87%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_jni_init.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBQueryStream.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBQueryStream.cc:25: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc:29: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api/tiledb.h:44, from /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api/tiledb_utils.h:39, from /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/vcf2binary.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:23: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc: In function 'jlong Java_org_genomicsdb_importer_GenomicsDBImporterJni_jniInitializeGenomicsDBImporterObject(JNIEnv*, jobject, jstring, jint)': /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:102:3: warning: control reaches end of non-void function [-Wreturn-type] 102 | } | ^ /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc: In function 'jlong Java_org_genomicsdb_importer_GenomicsDBImporterJni_jniSetupGenomicsDBLoader(JNIEnv*, jobject, jlong, jstring)': /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:159:3: warning: control reaches end of non-void function [-Wreturn-type] 159 | } | ^ /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc: In function 'jboolean Java_org_genomicsdb_importer_GenomicsDBImporterJni_jniImportBatch(JNIEnv*, jobject, jlong, jlongArray)': /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:231:3: warning: control reaches end of non-void function [-Wreturn-type] 231 | } | ^ [ 87%] Linking CXX executable test_expressions cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_expressions.dir/link.txt --verbose=1 [ 87%] Linking CXX executable test_sparse_array_api cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sparse_array_api.dir/link.txt --verbose=1 _mapping.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o /usr/bin/ranlib libgenomicsdb.a make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 87%] Built target genomicsdb make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/depend make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/depend make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/depend make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/depend make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/DependInfo.cmake "--color=" make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/DependInfo.cmake "--color=" make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/DependInfo.cmake "--color=" make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/depend make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/DependInfo.cmake "--color=" make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf_histogram.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/DependInfo.cmake "--color=" /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_expressions.dir/link.d CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -o test_expressions ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/build make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 88%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/ctest_main.cc.o [ 88%] Building CXX object tools/CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o [ 89%] Building CXX object src/test/cpp/CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o [ 90%] Building CXX object tools/CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o [ 91%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o [ 91%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_pb.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT tools/CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o -MF CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o.d -o CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/ctest_main.cc.o -MF CMakeFiles/ctests.dir/src/ctest_main.cc.o.d -o CMakeFiles/ctests.dir/src/ctest_main.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/ctest_main.cc [ 91%] Building CXX object tools/CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -MF CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o.d -o CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_genomicsdb_api.cc [ 91%] Building CXX object example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT tools/CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o -MF CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o.d -o CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/tools/src/gt_mpi_gather.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_pb.cc.o -MF CMakeFiles/ctests.dir/src/test_pb.cc.o.d -o CMakeFiles/ctests.dir/src/test_pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_pb.cc [ 91%] Building CXX object tools/CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT tools/CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -MF CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o.d -o CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -MF CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o.d -o CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_bcf_generator.cc [ 91%] Built target test_expressions [ 91%] Building CXX object src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT tools/CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o -MF CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o.d -o CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb_init.cc [ 91%] Building CXX object tools/CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o [ 91%] Building CXX object src/test/cpp/CMakeFiles/api_tests.dir/src/ctest_main.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o -MF CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o.d -o CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_non_diploid_mapper.cc [ 91%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_multid_vector.cc.o [ 91%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_config.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o -MF CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o.d -o CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_genomicsdb_demo.cc [ 91%] Building CXX object tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/api_tests.dir/src/ctest_main.cc.o -MF CMakeFiles/api_tests.dir/src/ctest_main.cc.o.d -o CMakeFiles/api_tests.dir/src/ctest_main.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/ctest_main.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT tools/CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -MF CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o.d -o CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/tools/src/create_genomicsdb_workspace.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_config.cc.o -MF CMakeFiles/ctests.dir/src/test_config.cc.o.d -o CMakeFiles/ctests.dir/src/test_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_config.cc [ 92%] Building CXX object tools/CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o [ 92%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -MF CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o.d -o CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/tools/src/consolidate_genomicsdb_array.cc [ 92%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_logger.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_multid_vector.cc.o -MF CMakeFiles/ctests.dir/src/test_multid_vector.cc.o.d -o CMakeFiles/ctests.dir/src/test_multid_vector.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_multid_vector.cc [ 92%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o [ 93%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o [ 93%] Building CXX object example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT tools/CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o -MF CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o.d -o CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf_histogram.cc [ 94%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o [ 95%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_logger.cc.o -MF CMakeFiles/ctests.dir/src/test_logger.cc.o.d -o CMakeFiles/ctests.dir/src/test_logger.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_logger.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o -MF CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o.d -o CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_alleles_combiner.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -MF CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o.d -o CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_importer.cc [ 95%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_query_variants.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o -MF CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o.d -o CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_columnar_gvcf_iterator.cc [ 95%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_mem_utils.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o -MF CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o.d -o CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_gt_remapper.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o -MF CMakeFiles/ctests.dir/src/test_bgen.cc.o.d -o CMakeFiles/ctests.dir/src/test_bgen.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_bgen.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_query_variants.cc.o -MF CMakeFiles/ctests.dir/src/test_query_variants.cc.o.d -o CMakeFiles/ctests.dir/src/test_query_variants.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_query_variants.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_mem_utils.cc.o -MF CMakeFiles/ctests.dir/src/test_mem_utils.cc.o.d -o CMakeFiles/ctests.dir/src/test_mem_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_mem_utils.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o -MF CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o.d -o CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_htslib_plugin.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_sparse_array_api.dir/link.d CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -o test_sparse_array_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 95%] Built target test_sparse_array_api In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/tools/src/gt_mpi_gather.cc:30: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/tools/src/gt_mpi_gather.cc:24: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_non_diploid_mapper.cc:26: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:11, from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, from /usr/include/catch2/catch_all.hpp:25, from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_non_diploid_mapper.cc:24: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, from /build/reproducible-path/genomicsdb-1.5.5/tools/src/consolidate_genomicsdb_array.cc:29: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/tools/src/consolidate_genomicsdb_array.cc:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.5.5/tools/include/vcfdiff.h:31, from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:25: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/tools/include/vcfdiff.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, from /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_bcf_generator.cc:25: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_bcf_generator.cc:24: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf_histogram.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/vcf2binary.h:26, from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf_histogram.cc:23: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_query_variants.cc:31: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:11, from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, from /usr/include/catch2/catch_all.hpp:25, from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_query_variants.cc:28: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_columnar_gvcf_iterator.cc:31: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:11, from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, from /usr/include/catch2/catch_all.hpp:25, from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_columnar_gvcf_iterator.cc:29: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_multid_vector.cc:27: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:11, from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, from /usr/include/catch2/catch_all.hpp:25, from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_multid_vector.cc:24: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb.cc:26: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_algobase.h:65, from /usr/include/c++/15/bits/hashtable_policy.h:36, from /usr/include/c++/15/bits/hashtable.h:37, from /usr/include/c++/15/bits/unordered_map.h:33, from /usr/include/c++/15/unordered_map:43, from /usr/include/c++/15/functional:65, from /usr/include/spdlog/common.h:13, from /usr/include/spdlog/spdlog.h:12, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/genomicsdb_logger.h:41, from /build/reproducible-path/genomicsdb-1.5.5/tools/include/common.h:27, from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb.cc:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/genomicsdb_importer.h:25, from /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_importer.cc:26: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, from /usr/include/c++/15/string:49, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_importer.cc:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc: In constructor 'VCFDiffFile::VCFDiffFile(const std::string&, const std::string&)': /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:83:41: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 83 | std::string field_name = std::move(std::string(bcf_hdr_int2id(m_hdr, BCF_DT_ID, i))); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:83:41: note: remove 'std::move' call /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc: In member function 'void VCFDiffFile::compare_line(const bcf_hdr_t*, bcf1_t*)': /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:591:33: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 591 | auto gold_ID_set = std::move(get_ID_set(gold_line)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:591:33: note: remove 'std::move' call /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:592:33: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 592 | auto test_ID_set = std::move(get_ID_set(m_line)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:592:33: note: remove 'std::move' call /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb.cc: In function 'int main(int, char**)': /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb.cc:165:45: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 165 | auto loader_json_config_file = std::move(std::string(argv[optind])); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb.cc:165:45: note: remove 'std::move' call [ 96%] Linking CXX executable test_genomicsdb_bcf_generator cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_bcf_generator.dir/link.txt --verbose=1 [ 96%] Linking CXX shared library libgenomicsdbjni.so cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdbjni.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,--dependency-file=CMakeFiles/genomicsdbjni.dir/link.d -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -shared -Wl,-soname,libgenomicsdbjni.so -o libgenomicsdbjni.so CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/usr/lib/x86_64-linux-gnu/openmpi/lib:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib libgenomicsdb.so.1.5.4 ../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl ../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 96%] Built target genomicsdbjni [ 96%] Linking CXX executable gt_mpi_gather cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/gt_mpi_gather.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/test_genomicsdb_bcf_generator.dir/link.d CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -o test_genomicsdb_bcf_generator -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 96%] Built target test_genomicsdb_bcf_generator /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/gt_mpi_gather.dir/link.d CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o -o gt_mpi_gather -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 96%] Built target gt_mpi_gather [ 96%] Linking CXX executable create_genomicsdb_workspace cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_genomicsdb_workspace.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/create_genomicsdb_workspace.dir/link.d CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -o create_genomicsdb_workspace -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 96%] Built target create_genomicsdb_workspace [ 96%] Linking CXX executable vcf_histogram cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf_histogram.dir/link.txt --verbose=1 [ 96%] Linking CXX executable api_tests cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/api_tests.dir/link.txt --verbose=1 [ 97%] Linking CXX executable vcfdiff cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfdiff.dir/link.txt --verbose=1 [ 98%] Linking CXX executable consolidate_genomicsdb_array cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/consolidate_genomicsdb_array.dir/link.txt --verbose=1 [ 98%] Linking CXX executable test_genomicsdb_demo cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_demo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/vcfdiff.dir/link.d CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -o vcfdiff -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 98%] Built target vcfdiff /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/vcf_histogram.dir/link.d CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o -o vcf_histogram -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/api_tests.dir/link.d CMakeFiles/api_tests.dir/src/ctest_main.cc.o CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -o api_tests -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E tar xzf /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/../inputs/test.tgz [ 98%] Built target vcf_histogram make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 98%] Built target api_tests [ 98%] Linking CXX executable test_genomicsdb_importer cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_importer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/consolidate_genomicsdb_array.dir/link.d CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -o consolidate_genomicsdb_array -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/test_genomicsdb_demo.dir/link.d CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o -o test_genomicsdb_demo -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 98%] Built target test_genomicsdb_demo [ 98%] Built target consolidate_genomicsdb_array [ 99%] Linking CXX executable vcf2genomicsdb cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2genomicsdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/test_genomicsdb_importer.dir/link.d CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -o test_genomicsdb_importer -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 99%] Built target test_genomicsdb_importer /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/vcf2genomicsdb.dir/link.d CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o -o vcf2genomicsdb -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 99%] Built target vcf2genomicsdb [100%] Linking CXX executable ctests cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ctests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/ctests.dir/link.d CMakeFiles/ctests.dir/src/ctest_main.cc.o CMakeFiles/ctests.dir/src/test_config.cc.o CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o CMakeFiles/ctests.dir/src/test_multid_vector.cc.o CMakeFiles/ctests.dir/src/test_pb.cc.o CMakeFiles/ctests.dir/src/test_logger.cc.o CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o CMakeFiles/ctests.dir/src/test_bgen.cc.o CMakeFiles/ctests.dir/src/test_query_variants.cc.o CMakeFiles/ctests.dir/src/test_mem_utils.cc.o -o ctests -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [100%] Built target ctests [100%] Linking CXX executable vcf2genomicsdb_init cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2genomicsdb_init.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/vcf2genomicsdb_init.dir/link.d CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o -o vcf2genomicsdb_init -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [100%] Built target vcf2genomicsdb_init make[3]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5' # Building the Java part with Maven. dh_auto_build --buildsystem=maven /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/genomicsdb-1.5.5 -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/build/reproducible-path/genomicsdb-1.5.5/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/genomicsdb-1.5.5/debian -Dmaven.repo.local=/build/reproducible-path/genomicsdb-1.5.5/debian/maven-repo --batch-mode package -DskipTests -Dnotimestamp=true -Dlocale=en_US OpenJDK 64-Bit Server VM warning: Options -Xverify:none and -noverify were deprecated in JDK 13 and will likely be removed in a future release. [INFO] Scanning for projects... [INFO] [INFO] ---------------------< org.genomicsdb:genomicsdb >---------------------- [INFO] Building org.genomicsdb:genomicsdb 1.5.5 [INFO] from pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [WARNING] The artifact com.googlecode.json-simple:json-simple:jar:debian has been relocated to com.github.cliftonlabs:json-simple:jar:debian [INFO] [INFO] --- antrun:3.1.0:run (exec-protoc) @ genomicsdb --- [INFO] Executing tasks [INFO] [mkdir] Created dir: /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java [INFO] Executed tasks [INFO] [INFO] --- build-helper:3.3.0:add-source (add-source) @ genomicsdb --- [INFO] Source directory: /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java added. [INFO] Source directory: /build/reproducible-path/genomicsdb-1.5.5/src/main/java added. [INFO] Source directory: /build/reproducible-path/genomicsdb-1.5.5/src/main/scala added. [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ genomicsdb --- [INFO] skip non existing resourceDirectory /build/reproducible-path/genomicsdb-1.5.5/src/main/resources [INFO] [INFO] --- compiler:3.13.0:compile (default-compile) @ genomicsdb --- [INFO] Recompiling the module because of changed source code. [INFO] Compiling 30 source files with javac [debug target 17] to build/classes [WARNING] system modules path not set in conjunction with -source 17 [INFO] Annotation processing is enabled because one or more processors were found on the class path. A future release of javac may disable annotation processing unless at least one processor is specified by name (-processor), or a search path is specified (--processor-path, --processor-module-path), or annotation processing is enabled explicitly (-proc:only, -proc:full). Use -Xlint:-options to suppress this message. Use -proc:none to disable annotation processing. [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBVidMapProto.java:[93,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/model/ImportConfig.java:[76,36] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBImportConfiguration.java:[177,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBImportConfiguration.java:[2228,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBImportConfiguration.java:[2269,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/Coordinates.java:[792,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/Coordinates.java:[3035,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/Coordinates.java:[3987,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBCallsetsMapProto.java:[139,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBTimer.java:[37,14] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/exception/GenomicsDBException.java:[28,8] serializable class org.genomicsdb.exception.GenomicsDBException has no definition of serialVersionUID [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[91,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[91,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[91,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[91,50] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[160,28] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[322,73] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[322,73] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[322,73] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[333,9] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[333,33] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[334,9] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[334,30] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[336,9] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[336,41] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[338,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[338,36] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[342,17] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[342,40] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[367,44] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[367,44] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[367,44] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[462,17] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[462,45] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[483,9] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[483,41] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[690,94] found raw type: java.util.concurrent.CompletableFuture missing type arguments for generic class java.util.concurrent.CompletableFuture [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[799,58] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[799,58] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[799,58] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[224,46] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[99,19] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[395,80] previous possible 'this' escape happens here via invocation [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[109,19] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[395,80] previous possible 'this' escape happens here via invocation [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[50,17] serializable class org.genomicsdb.reader.GenomicsDBQuery.Pair has no definition of serialVersionUID [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[70,17] serializable class org.genomicsdb.reader.GenomicsDBQuery.VariantCall has no definition of serialVersionUID [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[76,25] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[110,17] serializable class org.genomicsdb.reader.GenomicsDBQuery.Interval has no definition of serialVersionUID [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[112,23] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[483,84] PARSER in org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[5485,72] PARSER in org.genomicsdb.model.Coordinates.ContigInterval has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[4407,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[10171,72] PARSER in org.genomicsdb.model.Coordinates.ContigInterval has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[7553,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[7594,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[7635,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/model/CommandLineImportConfig.java:[54,27] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/model/CommandLineImportConfig.java:[139,58] previous possible 'this' escape happens here via invocation [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBFeatureReader.java:[79,39] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBFeatureReader.java:[206,31] previous possible 'this' escape happens here via invocation [INFO] [INFO] --- antrun:3.1.0:run (copy-native-libs) @ genomicsdb --- [INFO] Executing tasks [WARNING] [exec] The command attribute is deprecated. [exec] Please use the executable attribute and nested arg elements. [INFO] [exec] cp: cannot stat '/build/reproducible-path/genomicsdb-1.5.5/build/src/main/libtiledbgenomicsdb.dylib': No such file or directory [INFO] [exec] Result: 1 [WARNING] [exec] The command attribute is deprecated. [exec] Please use the executable attribute and nested arg elements. [INFO] [exec] cp: cannot stat '/build/reproducible-path/genomicsdb-1.5.5/build/src/main/libtiledbgenomicsdb.so': No such file or directory [INFO] [exec] Result: 1 [INFO] Executed tasks [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ genomicsdb --- [INFO] skip non existing resourceDirectory /build/reproducible-path/genomicsdb-1.5.5/src/test/resources [INFO] [INFO] --- antrun:3.1.0:run (unzip-test-artifacts) @ genomicsdb --- [INFO] Executing tasks [INFO] [mkdir] Created dir: /build/reproducible-path/genomicsdb-1.5.5/build/test [INFO] [copy] Copying 1 file to /build/reproducible-path/genomicsdb-1.5.5/build/test [INFO] [gunzip] Expanding test.tar.gz to /build/reproducible-path/genomicsdb-1.5.5/build/test/test.tar [INFO] [untar] Expanding: /build/reproducible-path/genomicsdb-1.5.5/build/test/test.tar into /build/reproducible-path/genomicsdb-1.5.5/build/test [INFO] Executed tasks [INFO] [INFO] --- compiler:3.13.0:testCompile (default-testCompile) @ genomicsdb --- [INFO] Recompiling the module because of changed dependency. [INFO] Compiling 12 source files with javac [debug target 17] to build/test-classes [WARNING] system modules path not set in conjunction with -source 17 [INFO] Annotation processing is enabled because one or more processors were found on the class path. A future release of javac may disable annotation processing unless at least one processor is specified by name (-processor), or a search path is specified (--processor-path, --processor-module-path), or annotation processing is enabled explicitly (-proc:only, -proc:full). Use -Xlint:-options to suppress this message. Use -proc:none to disable annotation processing. [WARNING] No processor claimed any of these annotations: /org.testng.annotations.Test,/org.testng.annotations.BeforeClass,/org.testng.annotations.DataProvider,/org.testng.annotations.BeforeMethod,/org.testng.annotations.AfterMethod [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[171,9] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[171,33] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[175,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[175,38] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[176,13] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[176,39] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[181,17] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[181,44] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[201,18] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[257,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[289,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[322,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[362,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[398,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[443,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[482,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[536,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [INFO] [INFO] --- surefire:2.22.3:test (default-test) @ genomicsdb --- [INFO] Tests are skipped. [INFO] [INFO] --- jar:3.3.0:jar (default-jar) @ genomicsdb --- [INFO] Building jar: /build/reproducible-path/genomicsdb-1.5.5/build/genomicsdb-1.5.5.jar [INFO] [INFO] --- jar:3.3.0:jar (main) @ genomicsdb --- [INFO] Building jar: /build/reproducible-path/genomicsdb-1.5.5/build/genomicsdb-1.5.5-main.jar [INFO] [INFO] --- jar:3.3.0:jar (spark) @ genomicsdb --- [INFO] Building jar: /build/reproducible-path/genomicsdb-1.5.5/build/genomicsdb-1.5.5-spark.jar [INFO] [INFO] --- antrun:3.1.0:run (replace-core-jar) @ genomicsdb --- [INFO] Executing tasks [INFO] [move] Moving 1 file to /build/reproducible-path/genomicsdb-1.5.5/build [INFO] [move] Moving 1 file to /build/reproducible-path/genomicsdb-1.5.5/build [INFO] Executed tasks [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6.908 s [INFO] Finished at: 2026-10-20T18:42:40-12:00 [INFO] ------------------------------------------------------------------------ make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' jh_build -O--buildsystem=cmake debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5' dh_auto_test -a || true cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[2]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: test_array_schema 1: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_array_schema 1: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 1: Test timeout computed to be: 10000000 test 2 Start 2: test_print_array_schema 2: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_print_array_schema 2: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 2: Test timeout computed to be: 10000000 test 3 Start 3: test_print_book_keeping 3: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_print_book_keeping 3: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 3: Test timeout computed to be: 10000000 test 4 Start 4: test_sparse_array_benchmark 4: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_sparse_array_benchmark 4: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 4: Test timeout computed to be: 10000000 test 5 Start 5: test_array_iterator 5: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_array_iterator 5: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 5: Test timeout computed to be: 10000000 test 6 Start 6: test_array_schema_api 6: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_array_schema_api 6: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 6: Test timeout computed to be: 10000000 test 7 Start 7: test_dense_array_api 7: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_dense_array_api 7: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 7: Test timeout computed to be: 10000000 test 8 Start 8: test_sparse_array_api 8: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_sparse_array_api 8: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 8: Test timeout computed to be: 10000000 test 9 Start 9: test_tiledb_utils 9: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_tiledb_utils 9: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 9: Test timeout computed to be: 10000000 test 10 Start 10: test_codec 10: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_codec 10: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 10: Test timeout computed to be: 10000000 test 11 Start 11: test_codec_filter 11: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_codec_filter 11: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 11: Test timeout computed to be: 10000000 test 12 Start 12: test_expressions 12: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_expressions 12: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 12: Test timeout computed to be: 10000000 test 13 Start 13: test_filter_api 13: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_filter_api 13: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 13: Test timeout computed to be: 10000000 test 14 Start 14: test_mem_utils 14: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_mem_utils 14: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 14: Test timeout computed to be: 10000000 test 15 Start 15: test_uri 15: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_uri 15: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 15: Test timeout computed to be: 10000000 test 16 Start 16: test_utils 16: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_utils 16: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 16: Test timeout computed to be: 10000000 test 17 Start 17: test_posixfs 17: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_posixfs 17: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 17: Test timeout computed to be: 10000000 test 18 Start 18: test_storage_buffer 18: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/test_storage_buffer 18: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 18: Test timeout computed to be: 10000000 test 19 Start 19: ci_tests 19: Test command: /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/run_examples.sh "&&" "echo" "Running diff with expected_results" "&&" "diff" "log" "/build/reproducible-path/genomicsdb-1.5.5/examples/expected_results" "&&" "/build/reproducible-path/genomicsdb-1.5.5/examples/run_examples_parallel.sh" 19: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples 19: Test timeout computed to be: 10000000 test 20 Start 20: ctests 20: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests "-d" "yes" 20: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp 20: Test timeout computed to be: 10000000 test 21 Start 21: api_tests 21: Test command: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/api_tests "-d" "yes" 21: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp 21: Test timeout computed to be: 10000000 test 22 Start 22: tools_tests 22: Test command: /build/reproducible-path/genomicsdb-1.5.5/tests/test_tools.sh "/build/reproducible-path/genomicsdb-1.5.5/tests/inputs/vcfs" "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools" "1" 22: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools 22: Test timeout computed to be: 10000000 1: Randomness seeded to: 2444370184 1: [TileDB::ArraySchema] Error: Cannot set attributes; No attributes given. 1: [TileDB::ArraySchema] Error: Cannot set attributes; The number of attributes must be positive. 1: [TileDB::ArraySchema] Error: Cannot set attributes; Duplicate attribute names. 1: [TileDB::ArraySchema] Error: Cannot set cell order; Invalid cell order. 1: [TileDB::ArraySchema] Error: Unsupported. For a given VAR attribute, both compression and offsets_compression have to either have compression or not 1: . 1: [TileDB::ArraySchema] Error: Cannot set dimensions; No dimensions given. 1: [TileDB::ArraySchema] Error: Cannot set dimensions; The number of dimensions must be positive. 1: [TileDB::ArraySchema] Error: Cannot set dimensions; Duplicate dimension names. 1: [TileDB::ArraySchema] Error: Cannot set dimensions; Attribute name same as dimension name. 1: [TileDB::ArraySchema] Error: Cannot set types; Types not provided. 1: [TileDB::ArraySchema] Error: Cannot set types; Invalid type. 1: [TileDB::ArraySchema] Error: Cannot set domain; Domain not provided. 1: [TileDB::ArraySchema] Error: Cannot set tile order; Invalid tile order. 1: Array Schema Version: 1: 2 1: Array workspace: 1: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test 1: Array name: 1: 1: Dimension names: 1: dim1 1: dim2 1: Attribute names: 1: test_attr 1: test_attr1 1: Domain: 1: dim1: [0,99] 1: dim2: [0,99] 1: Types: 1: test_attr: int32[1] 1: test_attr1: int32[var] 1: Coordinates: int32 1: Cell sizes (in bytes): 1: test_attr: 4 1: test_attr1: var 1: Coordinates: 8 1: Dense: 1: false 1: Tile types: 1: irregular 1: Tile order: 1: - 1: Cell order: 1: column-major 1: Capacity: 1: 10000 1: Tile extents: 1: - 1: Compression for test_attr 1: Type = GZIP 1: Level= -1 1: Compression for test_attr1 1: Type = GZIP 1: Level= -1 1: Compression for offsets of test_attr1 1: Type = GZIP + DELTA_ENCODE 1: Level= -1 1: Compression for Coordinates: 1: Type = GZIP 1: Array Schema Version: 1: 2 1: Array name: 1: this_array 1: Dimension names: 1: one_dim 1: Attribute names: 1: this_attribute 1: Domain: 1: one_dim: [1,100] 1: Types: 1: this_attribute: int32[1] 1: Coordinates: int32 1: Cell sizes (in bytes): 1: this_attribute: 4 1: Coordinates: 4 1: Dense: 1: false 1: Tile types: 1: regular 1: Tile order: 1: row-major 1: Cell order: 1: row-major 1: Capacity: 1: - 1: Tile extents: 1: one_dim: 25 1: Compression for this_attribute 1: Type = NONE 1: Level= -1 1: Compression for Coordinates: 1: Type = NONE 1: Array Schema Version: 1: 2 1: Array name: 1: this_array 1: Dimension names: 1: one_dim 1: Attribute names: 1: this_attribute 1: Domain: 1: one_dim: [1,100] 1: Types: 1: this_attribute: int32[1] 1: Coordinates: int32 1: Cell sizes (in bytes): 1: this_attribute: 4 1: Coordinates: 4 1: Dense: 1: false 1: Tile types: 1: regular 1: Tile order: 1: row-major 1: Cell order: 1: row-major 1: Capacity: 1: - 1: Tile extents: 1: one_dim: 25 1: Compression for this_attribute 1: Type = NONE 1: Level= -1 1: Compression for Coordinates: 1: Type = NONE 1: Array Schema Version: 1: 2 1: Array name: 1: this_array_64 1: Dimension names: 1: one_dim_64 1: Attribute names: 1: this_attribute 1: Domain: 1: one_dim_64: [1,1] 1: Types: 1: this_attribute: int64[1] 1: Coordinates: int64 1: Cell sizes (in bytes): 1: this_attribute: 8 1: Coordinates: 8 1: Dense: 1: false 1: Tile types: 1: regular 1: Tile order: 1: row-major 1: Cell order: 1: row-major 1: Capacity: 1: - 1: Tile extents: 1: one_dim_64: 25 1: Compression for this_attribute 1: Type = NONE 1: Level= -1 1: Compression for Coordinates: 1: Type = NONE 1: =============================================================================== 1: All tests passed (43 assertions in 7 test cases) 1: 2: No arguments specified 2: Usage: test_print_array_schema /path/to/TileDBArray 3: No arguments specified 3: Usage: test_print_book_keeping /path/to/TileDBArray/ 4: Randomness seeded to: 426235724 4: =============================================================================== 4: test cases: 1 | 1 passed 4: assertions: - none - 4: 6: Randomness seeded to: 1581995103 6: =============================================================================== 6: All tests passed (335 assertions in 13 test cases) 6: 9: Randomness seeded to: 284261635 9: [TileDB::utils] Error: (set_working_dir) Failed to set_working_dir as /tmp/TileDBTestXJ1HoP/WORKSPACE.nonexistent does not exist 9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTestzO77Wp/WORKSPACE errno=2(No such file or directory) 9: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=/tmp/TileDBTestzO77Wp/WORKSPACE errno=2(No such file or directory) 9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTestFTpGSS/WORKSPACE errno=2(No such file or directory) 10: Randomness seeded to: 1098129909 10: [TileDB::utils] Error: (gzip_handle_error) Cannot decompress with GZIP: inflate error: Z_BUF_ERROR 10: [TileDB::Codec] Error: Could not decompress with GZIP. 10: [TileDB::utils] Error: (gzip_handle_error) Cannot decompress with GZIP: inflate error: Z_BUF_ERROR 10: [TileDB::Codec] Error: Could not decompress with GZIP. 10: [TileDB::utils] Error: (gzip_handle_error) Cannot decompress with GZIP: inflate error: Z_DATA_ERROR 10: [TileDB::Codec] Error: Could not decompress with GZIP. 10: [TileDB::Codec] Error: Codec for compression type=15 has already been registered. 10: =============================================================================== 10: All tests passed (31 assertions in 5 test cases) 10: 11: Randomness seeded to: 1581857844 11: [TileDB::CodecFilter] Error: virtual method should be overridden. 11: [TileDB::CodecFilter] Error: virtual method should be overridden. 11: [TileDB::CodecFilter] Error: virtual method should be overridden. 11: [TileDB::CodecFilter] Error: virtual method should be overridden. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: =============================================================================== 11: All tests passed (192 assertions in 2 test cases) 11: 12: Randomness seeded to: 3910070575 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (init) Attribute a2 in expression filter not present in the array schema 12: [TileDB::Expression] Error: (init) Parser SetExpr error for expression 'a1 === 22': Unexpected operator "=" found at position 5. 12: [TileDB::Expression] Error: (evaluate) Initialization not completed 12: [TileDB::Expression] Error: (evaluate_cell) Initialization not completed 12: [TileDB::Expression] Error: (evaluate_cell) Only expressions evaluating to booleans is supported 12: [TileDB::Expression] Error: (init) Parser SetExpr error for expression 'resolve(a1) &= ""': Too few parameters passed to function "resolve". 12: [TileDB::Expression] Error: (init) Expression parsing for dense arrays not yet implemented 12: =============================================================================== 12: All tests passed (3334 assertions in 83 test cases) 12: 14: Randomness seeded to: 796045219 14: Tue Oct 20 18:42:41 2026 Memory stats Tracking memory usage START size=6MB resident=4MB share=3MB text=496KB lib=0 data=536KB dt=0 15: Randomness seeded to: 3100611392 15: =============================================================================== 15: All tests passed (131 assertions in 2 test cases) 15: 16: Randomness seeded to: 761623520 16: [TileDB::utils] Error: (RLE_compress) Failed compressing with RLE; invalid input buffer format 16: [TileDB::utils] Error: (RLE_compress) Failed compressing with RLE; output buffer overflow 16: [TileDB::utils] Error: (RLE_compress_coords_row) Failed compressing coordinates with RLE; invalid buffer format 16: [TileDB::utils] Error: (RLE_compress_coords_row) Filed compressing coordinates with RLE; output buffer overflow 16: [TileDB::utils] Error: (RLE_compress_coords_col) Failed compressing coordinates with RLE; invalid buffer format 16: [TileDB::utils] Error: (RLE_compress_coords_col) Failed compressing coordinates with RLE; output buffer overflow 16: [TileDB::FileSystem] Error: (create_dir) Cannot create directory path=/non-existent-dir/dir errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/non-existent-dir/file errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/non-existent-dir/file errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=/non-existent-dir/file errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (delete_file) Cannot remove file path=/non-existent-dir/file errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (delete_dir) Could not recursively delete directory path=/non-existent-dir/dir errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (move_path) Cannot rename path path=/non-existent-dir/old errno=2(No such file or directory) 17: Randomness seeded to: 2855905218 17: [TileDB::FileSystem] Error: (create_dir) Cannot create directory; Directory already exists path=/tmp/TileDBTestnmZwKD/test_posixfs_dirdir 17: [TileDB::FileSystem] Error: (create_dir) Cannot create directory path=/non-existent-dir/foo errno=2(No such file or directory) 17: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestnmZwKD/test_posixfs_dirdir errno=21(Is a directory) 17: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestnmZwKD/test_posixfs_dirdir errno=21(Is a directory) 17: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=non-existent-dir errno=2(No such file or directory) 17: [TileDB::FileSystem] Error: (move_path) Cannot rename path path=non-existent-dir errno=2(No such file or directory) 18: Randomness seeded to: 2854429998 18: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTest19baoC/test-file 18: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/tmp/TileDBTest19baoC/test-file-non-existent errno=2(No such file or directory) 18: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTest19baoC/test-file 18: [TileDB::StorageBuffer] Error: (read_buffer) Cannot read past the filesize from buffer path=/tmp/TileDBTest19baoC/test-file 1/22 Test #1: test_array_schema ................ Passed 0.13 sec 2/22 Test #2: test_print_array_schema .......... Passed 0.20 sec 3/22 Test #3: test_print_book_keeping .......... Passed 0.20 sec 4/22 Test #4: test_sparse_array_benchmark ...... Passed 0.20 sec 5/22 Test #6: test_array_schema_api ............ Passed 0.20 sec 6/22 Test #10: test_codec ....................... Passed 0.19 sec 7/22 Test #11: test_codec_filter ................ Passed 0.19 sec 8/22 Test #12: test_expressions ................. Passed 0.19 sec 9/22 Test #15: test_uri ......................... Passed 0.18 sec 18: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/non-existent-file errno=13(Permission denied) 18: [TileDB::StorageBuffer] Error: (write_buffer) Cannot write bytes path=/non-existent-file errno=13(Permission denied) 18: [TileDB::StorageBuffer] Error: (finalize) Could not finalize buffer after compression path=/non-existent-file errno=13(Permission denied) 18: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/non-existent-file errno=13(Permission denied) 18: [TileDB::StorageBuffer] Error: (gzip_write_buffer) Cannot write bytes path=/non-existent-file errno=13(Permission denied) 18: [TileDB::StorageBuffer] Error: (write_buffer) Cannot compress and/or write bytes path=/non-existent-file errno=13(Permission denied) 18: [TileDB::StorageBuffer] Error: (finalize) Could not finalize buffer after compression path=/non-existent-file errno=13(Permission denied) 18: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/non-existent-file errno=2(No such file or directory) 18: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/non-existent-file errno=2(No such file or directory) 18: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/non-existent-file errno=2(No such file or directory) 18: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/non-existent-file errno=2(No such file or directory) 18: [TileDB::StorageBuffer] Error: (write_buffer) Compression type=1000 not supported in StorageBuffer 18: [TileDB::StorageBuffer] Error: (finalize) Could not finalize buffer after compression path=/non-existent-file errno=2(No such file or directory) 18: [TileDB::StorageBuffer] Error: (read_buffer) Compression type=1000 for read_buffer not supported for CompressedStorageBuffer 18: [TileDB::StorageBuffer] Error: (read_buffer) Cannot read past the filesize from buffer path=/tmp/TileDBTestvcnWXU/compressed_foo 21: Randomness seeded to: 220555599 21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. 21: 18:42:41.205 ERROR NativeGenomicsDB - pid=542490 tid=542490 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container 21: [TileDB::FileSystem] Error: TileDB built with HDFS support disabled.: Protocol not supported 21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. 21: 18:42:41.205 ERROR NativeGenomicsDB - pid=542490 tid=542490 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container 21: [TileDB::FileSystem] Error: TileDB built with HDFS support disabled.: Protocol not supported 21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. 21: 18:42:41.205 ERROR NativeGenomicsDB - pid=542490 tid=542490 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container 21: [TileDB::FileSystem] Error: TileDB built with HDFS support disabled.: Protocol not supported 21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. 21: 18:42:41.205 ERROR NativeGenomicsDB - pid=542490 tid=542490 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container/ws 21: [TileDB::FileSystem] Error: TileDB built with HDFS support disabled.: Protocol not supported 21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. 21: 18:42:41.205 ERROR NativeGenomicsDB - pid=542490 tid=542490 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-ws 21: [TileDB::FileSystem] Error: TileDB built with HDFS support disabled.: Protocol not supported 21: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=non-existent-ws errno=2(No such file or directory) 21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. 21: 18:42:41.205 ERROR NativeGenomicsDB - pid=542490 tid=542490 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container/ws[TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=non-existent-ws errno=2(No such file or directory) 21: [TileDB::FileSystem] Error: TileDB built with HDFS support disabled.: Protocol not supported 13: Randomness seeded to: 2981391029 13: =============================================================================== 13: All tests passed (317 assertions in 3 test cases) 13: 10/22 Test #13: test_filter_api .................. Passed 0.19 sec 19: Example 1: Running ./tiledb_workspace_group_create... 19: Example 1: Done running ./tiledb_workspace_group_create 19: Example 2: Running ./tiledb_ls_workspaces... 19: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=&& errno=2(No such file or directory) 19: Example 2: Done running ./tiledb_ls_workspaces 19: Example 3: Running ./tiledb_array_create_dense... 19: Example 3: Done running ./tiledb_array_create_dense 19: Example 4: Running ./tiledb_array_create_sparse... 20: 18:42:41.295 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 20: 18:42:41.295 WARN NativeGenomicsDB - pid=542488 tid=542488 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 20: 18:42:41.295 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 20: Randomness seeded to: 24862611 20: 0.002 s: Check loader configuration with json file 20: 18:42:41.296 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 20: 18:42:41.296 WARN NativeGenomicsDB - pid=542488 tid=542488 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 20: 18:42:41.296 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 20: 0.001 s: Check configuration with json file 20: 18:42:41.296 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 20: 18:42:41.296 WARN NativeGenomicsDB - pid=542488 tid=542488 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 19: Example 4: Done running ./tiledb_array_create_sparse 20: 18:42:41.297 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 20: 0.001 s: Check configuration with json file and shared posifs optim 20: 18:42:41.297 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 20: 18:42:41.297 WARN NativeGenomicsDB - pid=542488 tid=542488 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 20: 18:42:41.297 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 20: 0.001 s: Compare configuration with json file and string 20: 0.000 s: genotype_ordering haploid_5_alleles 20: 0.000 s: genotype_ordering diploid_2_alleles 20: 0.000 s: genotype_ordering diploid_3_alleles 20: 0.000 s: genotype_ordering diploid_4_alleles 20: 0.000 s: genotype_ordering triploid_2_alleles 20: 0.000 s: genotype_ordering triploid_3_alleles 20: 0.000 s: genotype_ordering triploid_4_alleles 20: 0.000 s: genotype_ordering triploid_4_alleles_reordered_alleles 20: 0.000 s: genotype_ordering triploid_4_alleles_reordered_alleles_without_NON_REF 20: 0.000 s: multid_vector 2D_test 20: 0.000 s: multid_vector 3D_test 20: 0.000 s: multid_vector 2D_test_with_missing_values 20: 0.000 s: multid_vector 2D_float_test 20: 0.000 s: multid_vector 2D_tuple_test 20: 0.000 s: pb_query_config_test 19: Example 5: Running ./tiledb_array_primitive... 20: 0.001 s: pb_vid_mapping_test 20: 18:42:41.299 INFO NativeGenomicsDB - pid=542488 tid=542488 Contig/chromosome 2 begins at TileDB column 249250601 and intersects with contig/chromosome 1 that spans columns [0, 249250620] 20: 0.000 s: pb_overlapping_vid_mapping_test 20: 18:42:41.300 INFO NativeGenomicsDB - pid=542488 tid=542488 This is a test 20: 18:42:41.300 WARN NativeGenomicsDB - pid=542488 tid=542488 This is a test 20: 18:42:41.300 ERROR NativeGenomicsDB - pid=542488 tid=542488 This is a test 20: 18:42:41.300 DEBUG NativeGenomicsDB - pid=542488 tid=542488 This is a test 20: This is a test 20: This is a test 20: This is a test 20: This is a test 20: This is a once_only test 20: Trying format Hello1 Hello2 20: 0.000 s: test logger 20: 18:42:41.300 INFO NativeGenomicsDB - pid=542488 tid=542488 i=1 str=This is a test 20: 18:42:41.300 WARN NativeGenomicsDB - pid=542488 tid=542488 i=2 str=This is a test 20: 18:42:41.300 ERROR NativeGenomicsDB - pid=542488 tid=542488 i=3 str=This is a test 20: 18:42:41.300 DEBUG NativeGenomicsDB - pid=542488 tid=542488 i=4 str=This is a test 20: 18:42:41.300 INFO NativeGenomicsDB - pid=542488 tid=542488 i=6 str=This is a once_only test 20: 18:42:41.300 WARN NativeGenomicsDB - pid=542488 tid=542488 i=7 str=This is a once_only test 20: 0.000 s: test logger format 20: 18:42:41.300 ERROR NativeGenomicsDB - pid=542488 tid=542488 i=1 str=This is a test 20: 18:42:41.300 ERROR NativeGenomicsDB - pid=542488 tid=542488 Test Exception 20: 18:42:41.300 ERROR NativeGenomicsDB - pid=542488 tid=542488 Test Exception 20: 18:42:41.300 ERROR NativeGenomicsDB - pid=542488 tid=542488 Test Exception 20: 18:42:41.300 ERROR NativeGenomicsDB - pid=542488 tid=542488 Native Stack Trace: 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xb3fb2) [0x562696e1bfb2] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa4be6) [0x562696e0cbe6] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25851c) [0x562696fc051c] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259018) [0x562696fc1018] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25947a) [0x562696fc147a] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c653) [0x562696f94653] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c93c) [0x562696f9493c] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x7a59e) [0x562696de259e] 20: /lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7f8035433ca8] 20: 18:42:41.300 ERROR NativeGenomicsDB - pid=542488 tid=542488 Test Exception 20: 18:42:41.300 ERROR NativeGenomicsDB - pid=542488 tid=542488 Native Stack Trace: 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xb3fb2) [0x562696e1bfb2] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa4c09) [0x562696e0cc09] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25851c) [0x562696fc051c] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259018) [0x562696fc1018] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25947a) [0x562696fc147a] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c653) [0x562696f94653] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c93c) [0x562696f9493c] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x7a59e) [0x562696de259e] 20: /lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7f8035433ca8] 20: 0.000 s: test logger exceptions 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xb3fb2) [0x562696e1bfb2] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa7d3a) [0x562696e0fd3a] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25851c) [0x562696fc051c] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259018) [0x562696fc1018] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25947a) [0x562696fc147a] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c653) [0x562696f94653] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c93c) [0x562696f9493c] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x7a59e) [0x562696de259e] 20: /lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7f8035433ca8] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xb3fb2) [0x562696e1bfb2] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa7d60) [0x562696e0fd60] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25851c) [0x562696fc051c] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259018) [0x562696fc1018] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25947a) [0x562696fc147a] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c653) [0x562696f94653] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c93c) [0x562696f9493c] 20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x7a59e) [0x562696de259e] 20: /lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7f8035433ca8] 20: This is a test 20: 0.000 s: test explicit logger 20: 18:42:41.300 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 20: 18:42:41.300 WARN NativeGenomicsDB - pid=542488 tid=542488 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 20: 18:42:41.300 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 19: Array name: my_workspace/dense_arrays/my_array_A 19: Attributes: a1 a2 a3 19: The array is dense 19: Array name: my_workspace/sparse_arrays/my_array_B 19: Attributes: a1 a2 a3 19: The array is sparse 19: Example 5: Done running ./tiledb_array_primitive 19: Example 6: Running ./tiledb_array_write_dense_1... 20: 0.010 s: gvcf iterator 20: 18:42:41.310 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 20: 18:42:41.310 WARN NativeGenomicsDB - pid=542488 tid=542488 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 20: 18:42:41.311 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 20: 0.014 s: columnar_gvcf_iterator_test 20: 18:42:41.324 ERROR NativeGenomicsDB - pid=542488 tid=542488 hts_plugin could not find /tmp/GenomicsDBEdfTrE 20: [TileDB] Error: No TileDB support for URL=dfdfd://ddd. 20: 18:42:41.324 ERROR NativeGenomicsDB - pid=542488 tid=542488 htslib_plugin could not open dfdfd://ddd 20: No TileDB support for URL=dfdfd://ddd 20: 18:42:41.324 ERROR NativeGenomicsDB - pid=542488 tid=542488 hts_plugin could not find /tmp/GenomicsDBEdfTrE/foo 20: 18:42:41.325 ERROR NativeGenomicsDB - pid=542488 tid=542488 hts_plugin could not find /tmp/GenomicsDBEdfTrE/foo 20: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/dfdfd/dfdfd/non-existent-file errno=2(No such file or directory) 20: 18:42:41.325 ERROR NativeGenomicsDB - pid=542488 tid=542488 hts_plugin write /dfdfd/dfdfd/non-existent-file error [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/dfdfd/dfdfd/non-existent-file errno=2(No such file or directory) 20: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-file errno=2(No such file or directory) 20: 18:42:41.325 ERROR NativeGenomicsDB - pid=542488 tid=542488 hts_plugin read non-existent-file error [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-file errno=2(No such file or directory) 20: 0.000 s: test htslib plugin 20: 0.000 s: alleles_combiner 20: 0.000 s: gt_remapper 17: [TileDB::FileSystem] Error: (delete_dir) Could not recursively delete directory path=non-existent-dir errno=2(No such file or directory) 17: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=non-existent-dir errno=2(No such file or directory) 21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. 21: 0.554 s: utils 16: =============================================================================== 16: All tests passed (86 assertions in 6 test cases) 16: 21: 0.000 s: api empty_args 11/22 Test #16: test_utils ....................... Passed 0.68 sec 9: 7e820c3ee657b1a27a56a7be9d202a7a7e820c3ee657b1a27a56a7be9d202a7a[TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestNRJ2pI/test_file 9: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestNRJ2pI/test_file 21: 0.030 s: api query_variants direct DP 21: 0.013 s: api query_variants direct DP with huge row range 21: 0.012 s: api query_variants direct DP with huge disjoint row ranges 21: 0.017 s: api query_variants direct DP with range composed of multiple points 21: 0.016 s: api query_variants direct DP with range composed of overlapping ranges 21: 18:42:41.857 ERROR NativeGenomicsDB - pid=542490 tid=542490 Query interval 0:-100-1 is out of bounds 21: 0.010 s: api query_variants direct DP with invalid row range 21: 0.020 s: api query_variants direct DP and GT 21: 0.181 s: api query_variants direct DP and GT with PP 21: 18:42:42.060 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.060 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.060 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.072 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.072 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.072 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 14: Tue Oct 20 18:42:42 2026 Memory stats Tracking memory usage END size=6MB resident=4MB share=4MB text=496KB lib=0 data=536KB dt=0 14: Test rusage 14: user cpu time=0seconds 0microseconds 14: sys cpu time=0seconds 2277microseconds 14: maximum resident set size: 4064KB 14: =============================================================================== 14: test cases: 1 | 1 passed 14: assertions: - none - 14: 12/22 Test #14: test_mem_utils ................... Passed 1.00 sec 21: 18:42:42.084 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.084 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.084 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 0.026 s: api query_variants with json 21: 18:42:42.085 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.085 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.085 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/ws/t0_1_2/.__consolidation_lock 21: 18:42:42.097 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.097 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.097 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.109 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.109 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.109 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 0.025 s: api query variants with json string 17: [TileDB::FileSystem] Error: (delete_file) Cannot remove file path=/tmp/TileDBTestzOmIVR/test_posixfs_dirfile/foo1 errno=2(No such file or directory) 21: 18:42:42.146 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.146 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.147 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 0.049 s: api query variants with enabled shared posixfs optimizations 21: ---------------- 21: Interval:[0,9223372036854775806] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] DP:76 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] DP:76 21: 0.030 s: api query_variant_calls direct 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 0.029 s: api query_variant_calls direct DP and GT 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0|0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 0.029 s: api query_variant_calls direct DP and GT with PP 21: 18:42:42.248 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.248 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.248 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] DP:76 21: 18:42:42.261 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.261 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.261 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.272 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.272 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.272 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 0.025 s: api query_variant_calls with json 21: 18:42:42.273 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.273 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.273 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.274 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.274 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.274 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.274 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 9: =============================================================================== 9: All tests passed (10488239 assertions in 9 test cases) 9: 13/22 Test #9: test_tiledb_utils ................ Passed 1.21 sec 17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestaIKDlm/test_posixfs_dirread_write/foo 17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestaIKDlm/test_posixfs_dirread_write/foo 17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestaIKDlm/test_posixfs_dirread_write/foo 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.288 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.288 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.288 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.289 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.289 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.289 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.289 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.302 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.302 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.303 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.303 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.303 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.304 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.304 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: 0.011 s: Try query with contig intervals instead of tiledb column intervals 21: 0.041 s: api query_variant_calls with protobuf 21: 18:42:42.314 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.314 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.314 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.315 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.315 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.315 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.315 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.329 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.329 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.329 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.330 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.330 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.330 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.330 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.344 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.344 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.344 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.344 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.344 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.345 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.345 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: 0.012 s: Try query with a filter 21: 0.042 s: api query_variant_calls with protobuf 21: 18:42:42.356 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.356 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.356 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.357 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.357 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.357 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.357 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.370 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.370 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.371 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.371 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.371 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.372 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.372 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.385 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.385 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.386 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.386 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.386 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.387 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.387 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: 0.012 s: Try query with a filter and workspace with GT ploidy 21: 0.042 s: api query_variant_calls with protobuf 21: 18:42:42.398 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.398 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.398 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.398 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.398 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.399 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.399 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.412 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.412 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.412 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.413 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.413 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.413 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.413 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.427 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.427 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.427 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.428 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.428 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.428 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.428 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: 0.012 s: Try query with a filter and a small segment size to force TileDB buffers overflow 21: 0.041 s: api query_variant_calls with protobuf 21: 18:42:42.439 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.439 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.439 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.440 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.440 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.440 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.440 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.454 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.454 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.454 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.455 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.455 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.455 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.455 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.469 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.469 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.469 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.470 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.470 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.470 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.470 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: 0.013 s: Try query with POS and ROW with no match 21: 0.043 s: api query_variant_calls with protobuf 21: 18:42:42.482 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.482 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.482 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.483 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.483 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.483 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.483 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.498 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.498 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.498 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.499 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.499 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.499 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.499 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.513 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.513 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.513 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.514 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.514 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.514 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.514 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: 0.012 s: Try query with POS and ROW 21: 0.043 s: api query_variant_calls with protobuf 21: 18:42:42.525 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.525 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.526 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.526 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.526 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.526 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.526 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.541 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.541 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.541 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.542 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.542 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.542 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.542 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.556 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.556 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.556 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.557 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.557 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.557 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.557 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: 0.012 s: Try query with ISHOMREF 21: 0.043 s: api query_variant_calls with protobuf 21: 18:42:42.568 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.568 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.568 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.569 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.569 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.569 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.569 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.585 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.585 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.585 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.586 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.586 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.586 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.586 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.600 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.600 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.600 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.601 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.601 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.601 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.601 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: 0.012 s: Try query with ISHOMREF 21: 0.044 s: api query_variant_calls with protobuf 21: 18:42:42.612 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.612 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.612 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.613 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.613 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.613 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.613 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.627 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.627 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.627 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.627 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.628 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.628 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.628 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.641 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.641 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.642 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.642 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.642 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.643 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.643 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: 0.012 s: Try query with ISHOMREF 21: 0.041 s: api query_variant_calls with protobuf 21: 18:42:42.653 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.653 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.654 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.654 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.654 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.655 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.655 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.668 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.668 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.668 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.669 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.669 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.669 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.669 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: sample=HG00141 21: row=0 position=12140 21: genomic_interval=1:12141,12295 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG01958 21: row=1 position=12144 21: genomic_interval=1:12145,12277 21: genomic_fields 21: REF:C ALT:[] GT:0/0 21: sample=HG00141 21: row=0 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 21: sample=HG01958 21: row=1 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[T, ] GT:1/1 DP:120 21: sample=HG01530 21: row=2 position=17384 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 21: 18:42:42.683 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:42.683 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.683 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.684 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:42.684 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:42.684 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:42.684 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: 0.012 s: Try query with ISHOMREF 21: 0.041 s: api query_variant_calls with protobuf 21: 0.009 s: Base configuration 21: 0.010 s: api query_variant_calls with protobuf and config 21: 18:42:42.705 ERROR NativeGenomicsDB - pid=542490 tid=542490 Could not parse query_configuration. Only protobuf QueryConfiguration binary strings accepted as input argument 21: 0.000 s: Subset Array with pb string that is not Query or ExportConfiguration 21: 0.001 s: api query_variant_calls with protobuf and config 21: 0.009 s: Subset Array using QueryConfiguration 21: 0.010 s: api query_variant_calls with protobuf and config 21: 0.009 s: Subset Array using ExportConfiguration 21: 0.010 s: api query_variant_calls with protobuf and config 21: 0.009 s: Subset Array using QueryConfiguration - two intervals 21: 0.010 s: api query_variant_calls with protobuf and config 21: 0.011 s: Subset Array using QueryConfiguration - multiple queries 21: 0.012 s: api query_variant_calls with protobuf and config 21: 0.010 s: Test filter test for 0 21: 0.010 s: api query_variant_calls with protobuf new 17: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-dir/foo errno=2(No such file or directory) 17: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=non-existent-dir/foo errno=2(No such file or directory) 21: 0.010 s: Test filter test for 1 21: 0.010 s: api query_variant_calls with protobuf new 21: 0.010 s: Test filter test for 2 21: 0.011 s: api query_variant_calls with protobuf new 21: 0.011 s: Test filter test for 3 21: 0.011 s: api query_variant_calls with protobuf new 21: 273 {"HG00141":{"CHR":["1","1"],"POS":[12141,17385],"REF":["C","G"],"GT":["C/C","G/A"],"DP":[null,null]},"HG01530":{"CHR":["1"],"POS":[17385],"REF":["G"],"GT":["G/A"],"DP":[76]},"HG01958":{"CHR":["1","1"],"POS":[12145,17385],"REF":["C","G"],"GT":["C/C","T/T"],"DP":[null,120]}} 21: 21: 207 {"FIELD":["CHR","POS","REF","GT","DP"],"HG00141":[["1",12141,"C","C/C",null],["1",17385,"G","G/A",null]],"HG01530":[["1",17385,"G","G/A",76]],"HG01958":[["1",12145,"C","C/C",null],["1",17385,"G","T/T",120]]} 21: 21: 37 {"HG00141":2,"HG01530":1,"HG01958":2} 21: 21: 15 {"num_calls":5} 21: 21: 15 {"num_calls":5} 21: 21: 31 ["HG00141","HG01530","HG01958"] 21: 21: 1999 {"HG00141":{"CHR":["1","1"],"POS":[12141,17385],"REF":["C","G"],"QUAL":[null,475.7699890136719],"FILTER":[null,"0"],"DP":[null,null],"BaseQRankSum":[null,-2.0959999561309816],"ClippingRankSum":[null,-1.8589999675750733],"DS":["1","1"],"HaplotypeScore":[null,null],"InbreedingCoeff":[null,null],"MLEAC":[null,"1, 5"],"MLEAF":[null,"0.500000, 1.200000"],"MQ":[null,31.719999313354493],"RAW_MQ":[null,5.5],"MQ0":[null,8],"MQRankSum":[null,-0.32899999618530276],"ReadPosRankSum":[null,0.004999999888241291],"PGT":[null,"0|1"],"PID":[null,"17385_G_A"],"AD":[null,"58, 22, 17"],"DP_FORMAT":[2,80],"GQ":[0,99],"GT":["C/C","G/A"],"MIN_DP":[0,null],"PL":["0, 0, 0","504, 0, 9807, 678, 1870, 2548"],"SB":[null,"58, 0, 22, 0"]},"HG01530":{"CHR":["1"],"POS":[17385],"REF":["G"],"QUAL":[989.77001953125],"FILTER":[null],"DP":[76],"BaseQRankSum":[1.0460000038146973],"ClippingRankSum":[-2.242000102996826],"DS":[null],"HaplotypeScore":[null],"InbreedingCoeff":[null],"MLEAC":["1, 0"],"MLEAF":["0.500000, 0.000000"],"MQ":[59.369998931884769],"RAW_MQ":[null],"MQ0":[0],"MQRankSum":[-0.4320000112056732],"ReadPosRankSum":[2.055000066757202],"PGT":[null],"PID":[null],"AD":["40, 36, 0"],"DP_FORMAT":[76],"GQ":[99],"GT":["G/A"],"MIN_DP":[null],"PL":["1018, 0, 1116, 1137, 1224, 2361"],"SB":["9, 31, 13, 23"]},"HG01958":{"CHR":["1","1"],"POS":[12145,17385],"REF":["C","G"],"QUAL":[null,3302.77001953125],"FILTER":[null,"0"],"DP":[null,120],"BaseQRankSum":[null,-2.0739998817443849],"ClippingRankSum":[null,0.5550000071525574],"DS":["1",null],"HaplotypeScore":[null,null],"InbreedingCoeff":[null,null],"MLEAC":[null,"2, 7"],"MLEAF":[null,"1.000000, 0.700000"],"MQ":[null,29.81999969482422],"RAW_MQ":[null,2.5],"MQ0":[null,3],"MQRankSum":[null,-1.36899995803833],"ReadPosRankSum":[null,-0.10100000351667404],"PGT":[null,"0|1"],"PID":[null,"17385_G_T"],"AD":[null,"0, 120, 37"],"DP_FORMAT":[3,120],"GQ":[0,99],"GT":["C/C","T/T"],"MIN_DP":[0,null],"PL":["0, 0, 0","3336, 358, 0, 4536, 958, 7349"],"SB":[null,"0, 0, 0, 0"]}} 21: 21: 0.106 s: api query_variant_calls with JSONVariantCallProcessor 21: 0.000 s: Test genomicsdb demo test case 19: Example 6: Done running ./tiledb_array_write_dense_1 19: Example 7: Running ./tiledb_array_write_sparse_1... 21: 0.257 s: api generate_vcf direct 21: 18:42:43.155 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:43.155 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.155 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 18: =============================================================================== 18: All tests passed (450703 assertions in 3 test cases) 18: 14/22 Test #18: test_storage_buffer .............. Passed 2.07 sec 21: 0.013 s: api generate_vcf with json 21: 18:42:43.168 DEBUG NativeGenomicsDB - pid=542490 tid=542666 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:43.168 WARN NativeGenomicsDB - pid=542490 tid=542666 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.168 DEBUG NativeGenomicsDB - pid=542490 tid=542667 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:43.168 WARN NativeGenomicsDB - pid=542490 tid=542667 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542668 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:43.169 WARN NativeGenomicsDB - pid=542490 tid=542668 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542672 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:43.169 WARN NativeGenomicsDB - pid=542490 tid=542672 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542667 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542666 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542668 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542670 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:43.169 WARN NativeGenomicsDB - pid=542490 tid=542670 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542671 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:43.169 WARN NativeGenomicsDB - pid=542490 tid=542671 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542669 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542673 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:43.169 WARN NativeGenomicsDB - pid=542490 tid=542673 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.169 WARN NativeGenomicsDB - pid=542490 tid=542669 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542670 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542672 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542673 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542669 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:43.169 DEBUG NativeGenomicsDB - pid=542490 tid=542671 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 0.020 s: api generate_vcf with json multiple threads 21: 18:42:43.189 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:43.189 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.189 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:43.190 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:43.190 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.190 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:43.190 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.202 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:43.202 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.202 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:43.203 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:43.203 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.203 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:43.203 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.214 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 21: 18:42:43.214 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.214 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:43.215 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: 18:42:43.215 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead 21: 18:42:43.215 DEBUG NativeGenomicsDB - pid=542490 tid=542490 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name 21: 18:42:43.215 WARN NativeGenomicsDB - pid=542490 tid=542490 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: ---------------- 21: Interval:[0,1000000000] 21: 21: 0.027 s: api annotate query_variant_calls with test datasource 0 21: =============================================================================== 21: All tests passed (1548 assertions in 26 test cases) 21: 15/22 Test #21: api_tests ........................ Passed 2.13 sec 17: [TileDB::FileSystem] Error: (read_from_file) Cannot open simultaneously for reads/writes path=test_posixfs_dir_locking/foo 20: 18:42:43.545 INFO NativeGenomicsDB - pid=542488 tid=542488 Plink progress 3452039 / 6904084 = 50.00% 20: 18:42:43.545 ERROR NativeGenomicsDB - pid=542488 tid=542488 PL field for sample: HG00141 row: 0 column: 12277 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648 20: 18:42:43.545 ERROR NativeGenomicsDB - pid=542488 tid=542488 GL field for sample: HG00141 row: 0 column: 12277 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan 20: 18:42:43.545 ERROR NativeGenomicsDB - pid=542488 tid=542488 PL field for sample: HG00141 row: 0 column: 12299 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648 20: 18:42:43.545 ERROR NativeGenomicsDB - pid=542488 tid=542488 GL field for sample: HG00141 row: 0 column: 12299 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan 20: 18:42:43.545 ERROR NativeGenomicsDB - pid=542488 tid=542488 PL field for sample: HG01958 row: 1 column: 12299 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648 20: 18:42:43.545 ERROR NativeGenomicsDB - pid=542488 tid=542488 GL field for sample: HG01958 row: 1 column: 12299 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan 20: 18:42:43.545 ERROR NativeGenomicsDB - pid=542488 tid=542488 PL field for sample: HG00141 row: 0 column: 12399 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648 20: 18:42:43.545 ERROR NativeGenomicsDB - pid=542488 tid=542488 GL field for sample: HG00141 row: 0 column: 12399 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan 20: 18:42:43.545 ERROR NativeGenomicsDB - pid=542488 tid=542488 PL field for sample: HG01958 row: 1 column: 12399 contains a negative value or otherwise did not parse, full string: 0, 1, -2147483648 20: 18:42:43.545 ERROR NativeGenomicsDB - pid=542488 tid=542488 GL field for sample: HG01958 row: 1 column: 12399 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan 20: 18:42:43.545 ERROR NativeGenomicsDB - pid=542488 tid=542488 GL field for sample: HG00141 row: 0 column: 12499 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan, nan, nan, nan 20: 18:42:43.545 ERROR NativeGenomicsDB - pid=542488 tid=542488 PL field for sample: HG01958 row: 1 column: 12499 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648, -2147483648, -2147483648, -2147483648 20: 18:42:43.545 WARN NativeGenomicsDB - pid=542488 tid=542488 GL probabilities at sample: HG01958 row: 1 column: 12499 sum to 0.8981071705534972, expected near 1. Generated BGEN may be invalid 20: 2.296 s: test bgen 20: 18:42:43.643 ERROR NativeGenomicsDB - pid=542488 tid=542488 VariantStorageManagerException exception : Could not open workspace 20: 18:42:43.643 ERROR NativeGenomicsDB - pid=542488 tid=542488 Could not open array non_existent_array in workspace /tmp/GenomicsDBwd1JpT/ws 20: 18:42:43.643 ERROR NativeGenomicsDB - pid=542488 tid=542488 VariantQueryProcessorException : Could not open array non_existent_array at workspace /tmp/GenomicsDBwd1JpT/ws 20: 0.023 s: constructor 20: 18:42:43.643 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn 20: 18:42:43.643 WARN NativeGenomicsDB - pid=542488 tid=542488 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead 20: 18:42:43.644 DEBUG NativeGenomicsDB - pid=542488 tid=542488 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 20: 18:42:43.653 ERROR NativeGenomicsDB - pid=542488 tid=542488 Invalid query attribute : non_existent_attribute 20: 0.010 s: test basic queries 20: 18:42:43.653 INFO NativeGenomicsDB - pid=542488 tid=542488 Mem usage Check basic memory usage rss=50M 20: 0.000 s: check basic memory usage 20: =============================================================================== 20: All tests passed (1439 assertions in 34 test cases) 20: 20: 18:42:43.653 DEBUG NativeGenomicsDB - pid=542488 tid=542488 Deleting htslib_fs_adapter tiledb_ctx_map 16/22 Test #20: ctests ........................... Passed 2.57 sec 17: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_sync 17: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_no_close 17: =============================================================================== 17: All tests passed (258 assertions in 11 test cases) 17: 17/22 Test #17: test_posixfs ..................... Passed 4.25 sec 19: Example 7: Done running ./tiledb_array_write_sparse_1 5: Randomness seeded to: 3820495059 5: [TileDB::Expression] Error: (evaluate_cell) NYI: Filter expressions do not handle empty values yet 5: =============================================================================== 5: All tests passed (527 assertions in 6 test cases) 5: 18/22 Test #5: test_array_iterator .............. Passed 8.88 sec 19: Example 8: Running ./tiledb_ls... 19: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=&& errno=2(No such file or directory) 19: Example 8: Done running ./tiledb_ls 19: Example 9: Running ./tiledb_array_read_dense_1... 19: a1 a2 (a3.first, a3.second) 19: ----------------------------------------- 19: 0 a ( 0.1, 0.2) 19: 1 bb ( 1.1, 1.2) 19: 2 ccc ( 2.1, 2.2) 19: 3 dddd ( 3.1, 3.2) 19: 4 e ( 4.1, 4.2) 19: 5 ff ( 5.1, 5.2) 19: 6 ggg ( 6.1, 6.2) 19: 7 hhhh ( 7.1, 7.2) 19: 8 i ( 8.1, 8.2) 19: 9 jj ( 9.1, 9.2) 19: 10 kkk ( 10.1, 10.2) 19: 11 llll ( 11.1, 11.2) 19: 12 m ( 12.1, 12.2) 19: 13 nn ( 13.1, 13.2) 19: 14 ooo ( 14.1, 14.2) 19: 15 pppp ( 15.1, 15.2) 19: Example 9: Done running ./tiledb_array_read_dense_1 19: Example 10: Running ./tiledb_array_write_dense_2... 19: Example 10: Done running ./tiledb_array_write_dense_2 7: Randomness seeded to: 1213723346 19: Example 11: Running ./tiledb_array_read_dense_1... 19: a1 a2 (a3.first, a3.second) 19: ----------------------------------------- 19: 0 a ( 0.1, 0.2) 19: 1 bb ( 1.1, 1.2) 19: 2 ccc ( 2.1, 2.2) 19: 3 dddd ( 3.1, 3.2) 19: 4 e ( 4.1, 4.2) 19: 5 ff ( 5.1, 5.2) 19: 6 ggg ( 6.1, 6.2) 19: 7 hhhh ( 7.1, 7.2) 19: 8 i ( 8.1, 8.2) 19: 9 jj ( 9.1, 9.2) 19: 10 kkk ( 10.1, 10.2) 19: 11 llll ( 11.1, 11.2) 19: 12 m ( 12.1, 12.2) 19: 13 nn ( 13.1, 13.2) 19: 14 ooo ( 14.1, 14.2) 19: 15 pppp ( 15.1, 15.2) 19: Example 11: Done running ./tiledb_array_read_dense_1 19: Example 12: Running ./tiledb_array_read_dense_2... 19: a1 19: ---- 19: Reading cells... 19: 9 19: 11 19: 12 19: Reading cells... 19: 13 19: 14 19: 15 19: Example 12: Done running ./tiledb_array_read_dense_2 19: Example 13: Running ./tiledb_array_write_dense_sorted... 19: Example 13: Done running ./tiledb_array_write_dense_sorted 19: Example 14: Running ./tiledb_array_read_dense_1... 19: a1 a2 (a3.first, a3.second) 19: ----------------------------------------- 19: 0 a ( 0.1, 0.2) 19: 1 bb ( 1.1, 1.2) 19: 2 ccc ( 2.1, 2.2) 19: 3 dddd ( 3.1, 3.2) 19: 4 e ( 4.1, 4.2) 19: 5 ff ( 5.1, 5.2) 19: 6 ggg ( 6.1, 6.2) 19: 7 hhhh ( 7.1, 7.2) 19: 8 i ( 8.1, 8.2) 19: 9 jj ( 9.1, 9.2) 19: 10 kkk ( 10.1, 10.2) 19: 11 llll ( 11.1, 11.2) 19: 12 m ( 12.1, 12.2) 19: 13 nn ( 13.1, 13.2) 19: 14 ooo ( 14.1, 14.2) 19: 15 pppp ( 15.1, 15.2) 19: Example 14: Done running ./tiledb_array_read_dense_1 19: Example 15: Running ./tiledb_array_update_dense_1... 19: Example 15: Done running ./tiledb_array_update_dense_1 7: 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] =============================================================================== 7: All tests passed (115330768 assertions in 4 test cases) 7: 19/22 Test #7: test_dense_array_api ............. Passed 33.25 sec 19: Example 16: Running ./tiledb_array_read_dense_1... 19: a1 a2 (a3.first, a3.second) 19: ----------------------------------------- 19: 0 a ( 0.1, 0.2) 19: 1 bb ( 1.1, 1.2) 19: 2 ccc ( 2.1, 2.2) 19: 3 dddd ( 3.1, 3.2) 19: 4 e ( 4.1, 4.2) 19: 5 ff ( 5.1, 5.2) 19: 6 ggg ( 6.1, 6.2) 19: 7 hhhh ( 7.1, 7.2) 19: 8 i ( 8.1, 8.2) 19: 9 jj ( 9.1, 9.2) 19: 10 kkk ( 10.1, 10.2) 19: 11 llll ( 11.1, 11.2) 19: 112 M (112.1, 112.2) 19: 113 NN (113.1, 113.2) 19: 114 OOO (114.1, 114.2) 19: 115 PPPP (115.1, 115.2) 19: Example 16: Done running ./tiledb_array_read_dense_1 19: Example 17: Running ./tiledb_array_update_dense_2... 19: Example 17: Done running ./tiledb_array_update_dense_2 19: Example 18: Running ./tiledb_array_read_dense_1... 19: a1 a2 (a3.first, a3.second) 19: ----------------------------------------- 19: 0 a ( 0.1, 0.2) 19: 1 bb ( 1.1, 1.2) 19: 2 ccc ( 2.1, 2.2) 19: 3 dddd ( 3.1, 3.2) 19: 4 e ( 4.1, 4.2) 19: 5 ff ( 5.1, 5.2) 19: 6 ggg ( 6.1, 6.2) 19: 7 hhhh ( 7.1, 7.2) 19: 208 u (208.1, 208.2) 19: 9 jj ( 9.1, 9.2) 19: 10 kkk ( 10.1, 10.2) 19: 211 wwww (211.1, 211.2) 19: 212 x (212.1, 212.2) 19: 213 yy (213.1, 213.2) 19: 114 OOO (114.1, 114.2) 19: 115 PPPP (115.1, 115.2) 19: Example 18: Done running ./tiledb_array_read_dense_1 19: Example 19: Running ./tiledb_array_write_sparse_1... 19: Example 19: Done running ./tiledb_array_write_sparse_1 8: Randomness seeded to: 3897234943 8: 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] =============================================================================== 8: All tests passed (10441895 assertions in 15 test cases) 8: 20/22 Test #8: test_sparse_array_api ............ Passed 46.83 sec 19: Example 20: Running ./tiledb_array_read_sparse_1... 19: coords a1 a2 (a3.first, a3.second) 19: -------------------------------------------------- 19: (1, 1) 0 a ( 0.1, 0.2) 19: (1, 2) 1 bb ( 1.1, 1.2) 19: (1, 4) 2 ccc ( 2.1, 2.2) 19: (2, 3) 3 dddd ( 3.1, 3.2) 19: (3, 1) 4 e ( 4.1, 4.2) 19: (4, 2) 5 ff ( 5.1, 5.2) 19: (3, 3) 6 ggg ( 6.1, 6.2) 19: (3, 4) 7 hhhh ( 7.1, 7.2) 19: Example 20: Done running ./tiledb_array_read_sparse_1 19: Example 21: Running ./tiledb_array_read_sparse_filter_1... 19: coords a1 a2 (a3.first, a3.second) 19: -------------------------------------------------- 19: Example 21: Done running ./tiledb_array_read_sparse_filter_1 19: Example 22: Running ./tiledb_array_iterator_sparse... 19: a1 19: ---- 19: 5 19: 6 19: 7 19: Example 22: Done running ./tiledb_array_iterator_sparse 19: Example 23: Running ./tiledb_array_iterator_sparse_filter... 19: a1 19: ---- 19: 6 19: 7 19: Example 23: Done running ./tiledb_array_iterator_sparse_filter 19: Example 24: Running ./tiledb_array_read_sparse_2... 19: a1 19: ---- 19: Reading cells... 19: 5 19: 6 19: Reading cells... 19: 7 19: Example 24: Done running ./tiledb_array_read_sparse_2 19: Example 25: Running ./tiledb_array_read_sparse_filter_2... 19: a1 19: ---- 19: Reading cells... 19: 6 19: Reading cells... 19: 7 19: Example 25: Done running ./tiledb_array_read_sparse_filter_2 19: Example 26: Running ./tiledb_array_write_sparse_2... 19: Example 26: Done running ./tiledb_array_write_sparse_2 22: Build with DISABLE_MPI option set, not running gt_mpi_gather tests 21/22 Test #22: tools_tests ...................... Passed 48.54 sec 19: Example 27: Running ./tiledb_array_read_sparse_1... 19: coords a1 a2 (a3.first, a3.second) 19: -------------------------------------------------- 19: (1, 1) 0 a ( 0.1, 0.2) 19: (1, 2) 1 bb ( 1.1, 1.2) 19: (1, 4) 2 ccc ( 2.1, 2.2) 19: (2, 3) 3 dddd ( 3.1, 3.2) 19: (3, 1) 4 e ( 4.1, 4.2) 19: (4, 2) 5 ff ( 5.1, 5.2) 19: (3, 3) 6 ggg ( 6.1, 6.2) 19: (3, 4) 7 hhhh ( 7.1, 7.2) 19: Example 27: Done running ./tiledb_array_read_sparse_1 19: Example 28: Running ./tiledb_array_read_sparse_2... 19: a1 19: ---- 19: Reading cells... 19: 5 19: 6 19: Reading cells... 19: 7 19: Example 28: Done running ./tiledb_array_read_sparse_2 19: Example 29: Running ./tiledb_array_read_sparse_filter_2... 19: a1 19: ---- 19: Reading cells... 19: 6 19: Reading cells... 19: 7 19: Example 29: Done running ./tiledb_array_read_sparse_filter_2 19: Example 30: Running ./tiledb_array_update_sparse_1... 19: Example 30: Done running ./tiledb_array_update_sparse_1 19: Example 31: Running ./tiledb_array_read_sparse_1... 19: coords a1 a2 (a3.first, a3.second) 19: -------------------------------------------------- 19: (1, 1) 0 a ( 0.1, 0.2) 19: (1, 2) 1 bb ( 1.1, 1.2) 19: (1, 4) 2 ccc ( 2.1, 2.2) 19: (2, 3) 3 dddd ( 3.1, 3.2) 19: (3, 1) 4 e ( 4.1, 4.2) 19: (3, 2) 104 u (104.1, 104.2) 19: (4, 1) 105 vvvv (105.1, 105.2) 19: (4, 2) 5 ff ( 5.1, 5.2) 19: (3, 3) 106 w (106.1, 106.2) 19: (3, 4) 107 yyy (107.1, 107.2) 19: Example 31: Done running ./tiledb_array_read_sparse_1 19: Example 32: Running ./tiledb_array_read_sparse_filter_1... 19: coords a1 a2 (a3.first, a3.second) 19: -------------------------------------------------- 19: (4, 1) 105 vvvv (105.1, 105.2) 19: Example 32: Done running ./tiledb_array_read_sparse_filter_1 19: Example 33: Running ./tiledb_array_read_sparse_filter_2... 19: a1 19: ---- 19: Reading cells... 19: Reading cells... 19: 106 19: 107 19: Example 33: Done running ./tiledb_array_read_sparse_filter_2 19: Example 34: Running ./tiledb_array_iterator_sparse... 19: a1 19: ---- 19: 104 19: 5 19: 106 19: 107 19: Example 34: Done running ./tiledb_array_iterator_sparse 19: Example 35: Running ./tiledb_array_iterator_sparse_filter... 19: a1 19: ---- 19: 104 19: 106 19: 107 19: Example 35: Done running ./tiledb_array_iterator_sparse_filter 19: Example 36: Running ./tiledb_array_read_sparse_2... 19: a1 19: ---- 19: Reading cells... 19: 104 19: 5 19: Reading cells... 19: 106 19: 107 19: Example 36: Done running ./tiledb_array_read_sparse_2 19: Example 37: Running ./tiledb_array_consolidate... 19: Example 37: Done running ./tiledb_array_consolidate 19: Example 38: Running ./tiledb_array_read_dense_1... 19: a1 a2 (a3.first, a3.second) 19: ----------------------------------------- 19: 0 a ( 0.1, 0.2) 19: 1 bb ( 1.1, 1.2) 19: 2 ccc ( 2.1, 2.2) 19: 3 dddd ( 3.1, 3.2) 19: 4 e ( 4.1, 4.2) 19: 5 ff ( 5.1, 5.2) 19: 6 ggg ( 6.1, 6.2) 19: 7 hhhh ( 7.1, 7.2) 19: 208 u (208.1, 208.2) 19: 9 jj ( 9.1, 9.2) 19: 10 kkk ( 10.1, 10.2) 19: 211 wwww (211.1, 211.2) 19: 212 x (212.1, 212.2) 19: 213 yy (213.1, 213.2) 19: 114 OOO (114.1, 114.2) 19: 115 PPPP (115.1, 115.2) 19: Example 38: Done running ./tiledb_array_read_dense_1 19: Example 39: Running ./tiledb_array_read_sparse_1... 19: coords a1 a2 (a3.first, a3.second) 19: -------------------------------------------------- 19: (1, 1) 0 a ( 0.1, 0.2) 19: (1, 2) 1 bb ( 1.1, 1.2) 19: (1, 4) 2 ccc ( 2.1, 2.2) 19: (2, 3) 3 dddd ( 3.1, 3.2) 19: (3, 1) 4 e ( 4.1, 4.2) 19: (3, 2) 104 u (104.1, 104.2) 19: (4, 1) 105 vvvv (105.1, 105.2) 19: (4, 2) 5 ff ( 5.1, 5.2) 19: (3, 3) 106 w (106.1, 106.2) 19: (3, 4) 107 yyy (107.1, 107.2) 19: Example 39: Done running ./tiledb_array_read_sparse_1 19: Example 40: Running ./tiledb_array_read_dense_2... 19: a1 19: ---- 19: Reading cells... 19: 9 19: 211 19: 212 19: Reading cells... 19: 213 19: 114 19: 115 19: Example 40: Done running ./tiledb_array_read_dense_2 19: Example 41: Running ./tiledb_array_read_sparse_2... 19: a1 19: ---- 19: Reading cells... 19: 104 19: 5 19: Reading cells... 19: 106 19: 107 19: Example 41: Done running ./tiledb_array_read_sparse_2 19: Example 42: Running ./tiledb_array_3d... 19: 4 results 19: coords a1 a2 19: ----------------------- 19: 0, 0, 0 0 first 19: 0, 0, 1 1 second 19: 0, 2, 3 2 third 19: 2, 1, 1 3 fourth 19: Example 42: Done running ./tiledb_array_3d 22/22 Test #19: ci_tests ......................... Passed 67.67 sec 100% tests passed, 0 tests failed out of 22 Total Test time (real) = 67.70 sec make[2]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5' dh_auto_build cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/genomicsdb-1.5.5 -B/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/depend make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/depend make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/CMakeFiles/protobuf_ep.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bgzf.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/build Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'CMakeFiles/protobuf_ep.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/errmod.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/faidx.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/header.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts_os.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kfunc.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/knetfile.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kstring.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/md5.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/multipart.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/probaln.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/realn.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/regidx.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/region.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/sam.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". [ 0%] Built target protobuf_ep make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/resources /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target genomicsdb-hts make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target TILEDB_CORE_OBJECTS make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build [ 13%] Built target genomicsdb-hts [ 13%] Built target PROTOBUF_GENERATED_CXX_TARGET make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/DependInfo.cmake "--color=" [ 25%] Built target TILEDB_CORE_OBJECTS Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/depend Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/depend Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/DependInfo.cmake "--color=" Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/DependInfo.cmake "--color=" Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_shared make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". [ 26%] Built target tiledb_shared [ 26%] Built target tiledb_static make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/depend Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/compiler_depend.internal". cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/depend Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/compiler_depend.internal". cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/depend Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/depend Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_print_book_keeping make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_print_array_schema Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_array_schema make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target test_sparse_array_api Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_tiledb_utils make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/depend Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target test_codec_filter make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build Consolidate compiler generated dependencies of target test_codec Consolidate compiler generated dependencies of target test_dense_array_api make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_sparse_array_benchmark Consolidate compiler generated dependencies of target test_array_schema_api make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target test_filter_api make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_array_iterator Consolidate compiler generated dependencies of target tiledb_array_aio_read_dense make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/compiler_depend.internal". make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build Consolidate compiler generated dependencies of target test_uri make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_3d Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target test_expressions Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_mem_utils make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_posixfs Consolidate compiler generated dependencies of target tiledb_array_consolidate Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_create_sparse Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_storage_buffer Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build'. make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_iterator_sparse_filter make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target test_utils Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/compiler_depend.internal". make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/compiler_depend.internal". make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build Consolidate compiler generated dependencies of target tiledb_array_iterator_dense Consolidate compiler generated dependencies of target tiledb_array_parallel_read_dense_1 make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_aio_write_dense make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_parallel_consolidate_dense make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build Consolidate compiler generated dependencies of target tiledb_array_parallel_consolidate_sparse Consolidate compiler generated dependencies of target tiledb_array_parallel_read_dense_2 Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/compiler_depend.internal". make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_iterator_sparse Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_create_dense make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/compiler_depend.internal". make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/compiler_depend.internal". make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build Consolidate compiler generated dependencies of target tiledb_array_parallel_read_sparse_2 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_parallel_read_sparse_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_parallel_write_dense_1 Consolidate compiler generated dependencies of target tiledb_array_parallel_read_mpi_io_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_parallel_write_dense_2 Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build'. make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build'. make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build'. make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build'. Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build'. make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_primitive Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build'. make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build Consolidate compiler generated dependencies of target tiledb_array_parallel_write_sparse_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target GenomicsDB_library_object_files make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 26%] Built target test_print_book_keeping make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build'. make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build Consolidate compiler generated dependencies of target tiledb_array_parallel_write_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 26%] Built target test_codec_filter [ 27%] Built target test_codec [ 28%] Built target test_sparse_array_benchmark [ 30%] Built target test_dense_array_api [ 30%] Built target test_array_schema [ 30%] Built target test_tiledb_utils [ 31%] Built target test_sparse_array_api [ 32%] Built target test_print_array_schema make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/depend [ 33%] Built target test_filter_api make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/depend [ 34%] Built target test_array_schema_api make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/depend [ 35%] Built target tiledb_array_3d make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/depend [ 36%] Built target test_uri [ 36%] Built target test_array_iterator [ 36%] Built target test_mem_utils [ 37%] Built target test_posixfs [ 38%] Built target test_storage_buffer [ 38%] Built target test_utils make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/DependInfo.cmake "--color=" [ 38%] Built target test_expressions make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/depend [ 38%] Built target tiledb_array_aio_read_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/depend [ 39%] Built target tiledb_array_aio_write_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/DependInfo.cmake "--color=" [ 40%] Built target tiledb_array_consolidate [ 40%] Built target tiledb_array_iterator_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/DependInfo.cmake "--color=" [ 41%] Built target tiledb_array_iterator_sparse make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/DependInfo.cmake "--color=" [ 41%] Built target tiledb_array_create_dense [ 42%] Built target tiledb_array_create_sparse make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 43%] Built target tiledb_array_iterator_sparse_filter make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/depend [ 43%] Built target tiledb_array_parallel_consolidate_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/depend [ 43%] Built target tiledb_array_parallel_read_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/DependInfo.cmake "--color=" [ 44%] Built target tiledb_array_parallel_read_sparse_1 [ 44%] Built target tiledb_array_parallel_consolidate_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 45%] Built target tiledb_array_parallel_read_dense_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/DependInfo.cmake "--color=" [ 45%] Built target tiledb_array_parallel_write_dense_2 [ 46%] Built target tiledb_array_parallel_read_mpi_io_dense make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/DependInfo.cmake "--color=" [ 48%] Built target tiledb_array_parallel_write_dense_1 [ 47%] Built target tiledb_array_parallel_read_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/depend [ 49%] Built target tiledb_array_parallel_write_sparse_2 [ 49%] Built target tiledb_array_parallel_write_sparse_1 [ 50%] Built target tiledb_array_primitive make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/depend Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/depend Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target tiledb_array_read_dense_3 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/depend Consolidate compiler generated dependencies of target tiledb_array_read_dense_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/depend Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target tiledb_array_read_dense_1 Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/compiler_depend.internal". [ 65%] Built target GenomicsDB_library_object_files make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_read_dense_sorted Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_read_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/depend Consolidate compiler generated dependencies of target tiledb_array_read_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/depend Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_read_sparse_filter_1 Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_read_sparse_filter_2 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build'. make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/depend Consolidate compiler generated dependencies of target tiledb_array_read_sparse_sorted make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build'. Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/compiler_depend.internal". cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/compiler_depend.internal". make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_update_sparse_1 Consolidate compiler generated dependencies of target tiledb_array_update_sparse_2 Consolidate compiler generated dependencies of target tiledb_array_update_dense_1 Consolidate compiler generated dependencies of target tiledb_array_update_dense_2 Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_write_dense_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_write_dense_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_write_sparse_1 Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_write_dense_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_write_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdb.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build Consolidate compiler generated dependencies of target tiledb_array_write_sparse_4 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build Consolidate compiler generated dependencies of target tiledb_array_write_sparse_3 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build'. Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/compiler_depend.internal". make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build Consolidate compiler generated dependencies of target tiledb_config Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_clear_delete_move make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build'. Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_ls_workspaces make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_catching_errors Consolidate compiler generated dependencies of target tiledb_ls Consolidate compiler generated dependencies of target tiledb_delete make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_metadata_iterator Consolidate compiler generated dependencies of target tiledb_metadata_consolidate make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_metadata_create make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 65%] Built target tiledb_array_read_dense_2 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 66%] Built target tiledb_array_read_dense_sorted [ 67%] Built target tiledb_array_read_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_metadata_read make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build [ 68%] Built target tiledb_array_read_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build Consolidate compiler generated dependencies of target tiledb_metadata_primitive make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_metadata_update [ 68%] Built target tiledb_array_read_sparse_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/compiler_depend.internal". make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "src/main/CMakeFiles/tiledbgenomicsdb.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build'. make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledbgenomicsdb Consolidate compiler generated dependencies of target tiledb_metadata_write Consolidate compiler generated dependencies of target tiledb_workspace_group_create make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 69%] Built target tiledb_array_read_dense_3 make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 70%] Built target tiledb_array_read_sparse_sorted make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/main/CMakeFiles/tiledbgenomicsdb.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/main/CMakeFiles/genomicsdb.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 73%] Built target tiledb_array_write_dense_1 [ 73%] Built target tiledb_array_update_sparse_2 [ 73%] Built target tiledb_array_read_sparse_filter_2 [ 73%] Built target tiledb_array_read_sparse_filter_1 [ 73%] Built target tiledb_array_update_dense_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 74%] Built target tiledb_array_update_dense_2 [ 75%] Built target tiledb_array_write_dense_2 [ 75%] Built target tiledb_array_write_dense_sorted [ 76%] Built target tiledb_array_write_sparse_1 [ 77%] Built target tiledb_array_update_sparse_1 [ 77%] Built target tiledb_clear_delete_move [ 78%] Built target tiledb_array_write_sparse_3 [ 78%] Built target tiledb_ls_workspaces [ 78%] Built target tiledb_array_write_sparse_2 [ 78%] Built target tiledb_array_write_sparse_4 [ 79%] Built target tiledb_ls [ 79%] Built target tiledb_config [ 80%] Built target tiledb_metadata_iterator [ 81%] Built target tiledb_metadata_primitive [ 81%] Built target tiledb_metadata_create [ 82%] Built target tiledb_delete [ 83%] Built target tiledb_workspace_group_create [ 83%] Built target tiledb_metadata_read [ 83%] Built target genomicsdb [ 85%] Built target tiledb_catching_errors [ 85%] Built target tiledb_metadata_consolidate make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/depend make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/depend make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/depend make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/DependInfo.cmake "--color=" make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/DependInfo.cmake "--color=" [ 85%] Built target tiledbgenomicsdb make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/DependInfo.cmake "--color=" [ 86%] Built target tiledb_metadata_write [ 86%] Built target tiledb_metadata_update make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/DependInfo.cmake "--color=" make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/DependInfo.cmake "--color=" make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/DependInfo.cmake "--color=" make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/depend make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/DependInfo.cmake "--color=" make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf_histogram.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/DependInfo.cmake "--color=" Dependencies file "src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/src/ctest_main.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/create_genomicsdb_workspace.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/ctest_main.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/vcf2genomicsdb_init.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf_histogram.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/gt_mpi_gather.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/vcfdiff.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/vcf_histogram.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf_histogram.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". Dependencies file "example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/compiler_depend.internal". Dependencies file "example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". Dependencies file "example/CMakeFiles/test_genomicsdb_importer.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/compiler_depend.internal". Dependencies file "example/CMakeFiles/test_genomicsdb_bcf_generator.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target create_genomicsdb_workspace Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_genomicsdb_demo Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target vcf2genomicsdb_init Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target gt_mpi_gather make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/build Consolidate compiler generated dependencies of target vcfdiff Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target vcf_histogram make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target api_tests Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_logger.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/build Consolidate compiler generated dependencies of target test_genomicsdb_importer Consolidate compiler generated dependencies of target test_genomicsdb_bcf_generator make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/build Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_mem_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "tools/CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/compiler_depend.internal". make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/build Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_multid_vector.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/create_genomicsdb_workspace.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build Dependencies file "tools/CMakeFiles/vcf2genomicsdb.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "tools/CMakeFiles/consolidate_genomicsdb_array.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/vcf2genomicsdb_init.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/gt_mpi_gather.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_query_variants.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/vcfdiff.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/vcf_histogram.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'example/CMakeFiles/test_genomicsdb_importer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/test/cpp/CMakeFiles/api_tests.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target genomicsdbjni Consolidate compiler generated dependencies of target vcf2genomicsdb Consolidate compiler generated dependencies of target consolidate_genomicsdb_array make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/build make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/main/CMakeFiles/genomicsdbjni.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/vcf2genomicsdb.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 86%] Built target test_genomicsdb_demo [ 86%] Built target create_genomicsdb_workspace [ 86%] Built target vcf2genomicsdb_init [ 87%] Built target gt_mpi_gather make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/consolidate_genomicsdb_array.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 88%] Built target test_genomicsdb_bcf_generator [ 89%] Built target test_genomicsdb_importer [ 90%] Built target api_tests [ 91%] Built target vcfdiff [ 92%] Built target vcf_histogram Consolidate compiler generated dependencies of target ctests make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/build [ 94%] Built target genomicsdbjni [ 94%] Built target vcf2genomicsdb [ 95%] Built target consolidate_genomicsdb_array make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/test/cpp/CMakeFiles/ctests.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [100%] Built target ctests make[3]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' # Testing the Java part. We extend LD_LIBRARY_PATH because some test code is # run without surefire. LD_LIBRARY_PATH=":obj-x86_64-linux-gnu/src/main" dh_auto_test --buildsystem=maven /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/genomicsdb-1.5.5 -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/build/reproducible-path/genomicsdb-1.5.5/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/genomicsdb-1.5.5/debian -Dmaven.repo.local=/build/reproducible-path/genomicsdb-1.5.5/debian/maven-repo --batch-mode test OpenJDK 64-Bit Server VM warning: Options -Xverify:none and -noverify were deprecated in JDK 13 and will likely be removed in a future release. [INFO] Scanning for projects... [INFO] [INFO] ---------------------< org.genomicsdb:genomicsdb >---------------------- [INFO] Building org.genomicsdb:genomicsdb 1.5.5 [INFO] from pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [WARNING] The artifact com.googlecode.json-simple:json-simple:jar:debian has been relocated to com.github.cliftonlabs:json-simple:jar:debian [INFO] [INFO] --- antrun:3.1.0:run (exec-protoc) @ genomicsdb --- [INFO] Executing tasks [INFO] Executed tasks [INFO] [INFO] --- build-helper:3.3.0:add-source (add-source) @ genomicsdb --- [INFO] Source directory: /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java added. [INFO] Source directory: /build/reproducible-path/genomicsdb-1.5.5/src/main/java added. [INFO] Source directory: /build/reproducible-path/genomicsdb-1.5.5/src/main/scala added. [INFO] [INFO] --- resources:3.3.1:resources (default-resources) @ genomicsdb --- [INFO] skip non existing resourceDirectory /build/reproducible-path/genomicsdb-1.5.5/src/main/resources [INFO] [INFO] --- compiler:3.13.0:compile (default-compile) @ genomicsdb --- [INFO] Recompiling the module because of changed source code. [INFO] Compiling 30 source files with javac [debug target 17] to build/classes [WARNING] system modules path not set in conjunction with -source 17 [INFO] Annotation processing is enabled because one or more processors were found on the class path. A future release of javac may disable annotation processing unless at least one processor is specified by name (-processor), or a search path is specified (--processor-path, --processor-module-path), or annotation processing is enabled explicitly (-proc:only, -proc:full). Use -Xlint:-options to suppress this message. Use -proc:none to disable annotation processing. [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBVidMapProto.java:[93,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/model/ImportConfig.java:[76,36] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBImportConfiguration.java:[177,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBImportConfiguration.java:[2228,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBImportConfiguration.java:[2269,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/Coordinates.java:[792,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/Coordinates.java:[3035,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/Coordinates.java:[3987,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBCallsetsMapProto.java:[139,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBTimer.java:[37,14] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/exception/GenomicsDBException.java:[28,8] serializable class org.genomicsdb.exception.GenomicsDBException has no definition of serialVersionUID [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[91,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[91,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[91,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[91,50] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[160,28] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[322,73] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[322,73] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[322,73] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[333,9] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[333,33] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[334,9] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[334,30] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[336,9] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[336,41] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[338,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[338,36] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[342,17] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[342,40] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[367,44] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[367,44] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[367,44] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[462,17] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[462,45] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[483,9] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[483,41] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[690,94] found raw type: java.util.concurrent.CompletableFuture missing type arguments for generic class java.util.concurrent.CompletableFuture [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[799,58] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[799,58] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[799,58] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[224,46] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[99,19] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[395,80] previous possible 'this' escape happens here via invocation [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[109,19] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[395,80] previous possible 'this' escape happens here via invocation [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[50,17] serializable class org.genomicsdb.reader.GenomicsDBQuery.Pair has no definition of serialVersionUID [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[70,17] serializable class org.genomicsdb.reader.GenomicsDBQuery.VariantCall has no definition of serialVersionUID [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[76,25] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[110,17] serializable class org.genomicsdb.reader.GenomicsDBQuery.Interval has no definition of serialVersionUID [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[112,23] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[483,84] PARSER in org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[5485,72] PARSER in org.genomicsdb.model.Coordinates.ContigInterval has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[4407,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[10171,72] PARSER in org.genomicsdb.model.Coordinates.ContigInterval has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[7553,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[7594,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[7635,30] non-transient instance field of a serializable class declared with a non-serializable type [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/model/CommandLineImportConfig.java:[54,27] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/model/CommandLineImportConfig.java:[139,58] previous possible 'this' escape happens here via invocation [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBFeatureReader.java:[79,39] possible 'this' escape before subclass is fully initialized [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/main/java/org/genomicsdb/reader/GenomicsDBFeatureReader.java:[206,31] previous possible 'this' escape happens here via invocation [INFO] [INFO] --- antrun:3.1.0:run (copy-native-libs) @ genomicsdb --- [INFO] Executing tasks [WARNING] [exec] The command attribute is deprecated. [exec] Please use the executable attribute and nested arg elements. [INFO] [exec] cp: cannot stat '/build/reproducible-path/genomicsdb-1.5.5/build/src/main/libtiledbgenomicsdb.dylib': No such file or directory [INFO] [exec] Result: 1 [WARNING] [exec] The command attribute is deprecated. [exec] Please use the executable attribute and nested arg elements. [INFO] [exec] cp: cannot stat '/build/reproducible-path/genomicsdb-1.5.5/build/src/main/libtiledbgenomicsdb.so': No such file or directory [INFO] [exec] Result: 1 [INFO] Executed tasks [INFO] [INFO] --- resources:3.3.1:testResources (default-testResources) @ genomicsdb --- [INFO] skip non existing resourceDirectory /build/reproducible-path/genomicsdb-1.5.5/src/test/resources [INFO] [INFO] --- antrun:3.1.0:run (unzip-test-artifacts) @ genomicsdb --- [INFO] Executing tasks [INFO] [untar] Expanding: /build/reproducible-path/genomicsdb-1.5.5/build/test/test.tar into /build/reproducible-path/genomicsdb-1.5.5/build/test [INFO] Executed tasks [INFO] [INFO] --- compiler:3.13.0:testCompile (default-testCompile) @ genomicsdb --- [INFO] Recompiling the module because of changed dependency. [INFO] Compiling 12 source files with javac [debug target 17] to build/test-classes [WARNING] system modules path not set in conjunction with -source 17 [INFO] Annotation processing is enabled because one or more processors were found on the class path. A future release of javac may disable annotation processing unless at least one processor is specified by name (-processor), or a search path is specified (--processor-path, --processor-module-path), or annotation processing is enabled explicitly (-proc:only, -proc:full). Use -Xlint:-options to suppress this message. Use -proc:none to disable annotation processing. [WARNING] No processor claimed any of these annotations: /org.testng.annotations.Test,/org.testng.annotations.BeforeClass,/org.testng.annotations.DataProvider,/org.testng.annotations.BeforeMethod,/org.testng.annotations.AfterMethod [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[171,9] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[171,33] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[175,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[175,38] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[176,13] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[176,39] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[181,17] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[181,44] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[201,18] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[257,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[289,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[322,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[362,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[398,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[443,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[482,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [WARNING] /build/reproducible-path/genomicsdb-1.5.5/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[536,9] found raw type: org.genomicsdb.reader.GenomicsDBFeatureReader missing type arguments for generic class org.genomicsdb.reader.GenomicsDBFeatureReader [INFO] [INFO] --- surefire:2.22.3:test (default-test) @ genomicsdb --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running TestSuite ERROR StatusLogger Reconfiguration failed: No configuration found for '639fee48' at 'null' in 'null' GenomicsDB: org.genomicsdb.importer.extensions.VidMapExtensions VCF header has 2 lines with the same field name test_field and header line type -- only the first line is considered by GenomicsDB GenomicsDB: org.genomicsdb.importer.extensions.VidMapExtensions VCF header has 2 lines with the same field name test_field and header line type -- only the first line is considered by GenomicsDB GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),0.003459308,Cpu time(s),0.0034774009999999998 GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),0.00180629,Cpu time(s),0.0018442859999999999 GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),4.74858E-4,Cpu time(s),5.10679E-4 GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),4.22867E-4,Cpu time(s),4.6316E-4 GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),5.80303E-4,Cpu time(s),5.95396E-4 GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),3.29709E-4,Cpu time(s),3.42192E-4 GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),3.08553E-4,Cpu time(s),2.98388E-4 GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),4.02068E-4,Cpu time(s),4.13588E-4 [INFO] Tests run: 46, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.076 s - in TestSuite [INFO] [INFO] Results: [INFO] [INFO] Tests run: 46, Failures: 0, Errors: 0, Skipped: 0 [INFO] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 43.395 s [INFO] Finished at: 2026-10-20T18:44:34-12:00 [INFO] ------------------------------------------------------------------------ make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5' # Installing the Java part. dh_auto_install --buildsystem=maven /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/genomicsdb-1.5.5 -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/build/reproducible-path/genomicsdb-1.5.5/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/genomicsdb-1.5.5/debian -Dmaven.repo.local=/build/reproducible-path/genomicsdb-1.5.5/debian/maven-repo --batch-mode -Ddebian.dir=/build/reproducible-path/genomicsdb-1.5.5/debian -Ddebian.package=libgenomicsdb-java -Dmaven.repo.local=/build/reproducible-path/genomicsdb-1.5.5/debian/maven-repo -Dinstall.to.usj=true org.debian.maven:debian-maven-plugin:2.6:install OpenJDK 64-Bit Server VM warning: Options -Xverify:none and -noverify were deprecated in JDK 13 and will likely be removed in a future release. [INFO] Scanning for projects... [INFO] [INFO] ---------------------< org.genomicsdb:genomicsdb >---------------------- [INFO] Building org.genomicsdb:genomicsdb 1.5.5 [INFO] from pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- debian:2.6:install (default-cli) @ genomicsdb --- [INFO] Cleaning pom file: /build/reproducible-path/genomicsdb-1.5.5/pom.xml.save with options: [INFO] --keep-pom-version --package=libgenomicsdb-java [INFO] --rules=/build/reproducible-path/genomicsdb-1.5.5/debian/maven.rules [INFO] --ignore-rules=/build/reproducible-path/genomicsdb-1.5.5/debian/maven.ignoreRules [INFO] --published-rules=/build/reproducible-path/genomicsdb-1.5.5/debian/maven.publishedRules [INFO] Install jar for genomicsdb into /usr/share/java [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 3.269 s [INFO] Finished at: 2026-10-20T18:44:40-12:00 [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -plibgenomicsdb-java --base-directory=/build/reproducible-path/genomicsdb-1.5.5 --non-explore Analysing pom.xml... mh_unpatchpoms -plibgenomicsdb-java make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' dh_auto_install -O--buildsystem=cmake -Nlibgenomicsdb-java cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/genomicsdb-1.5.5/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/genomicsdb-1.5.5 -B/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-hts.so -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/knetfile.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/vcf_sweep.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kstring.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/faidx.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts_log.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/sam.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/khash.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kroundup.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kfunc.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/vcfutils.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/klist.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts_endian.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/tbx.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/khash_str2int.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kseq.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts_defs.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/regidx.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/bgzf.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/thread_pool.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/synced_bcf_reader.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hfile.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts_os.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/vcf.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/ksort.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/cram.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kbitset.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-tiledb.a -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-tiledb.so -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/tiledb/tiledb.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/tiledb/tiledb_constants.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/tiledb/tiledb_storage.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/tiledb/tiledb_utils.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/lib/x86_64-linux-gnu/libgenomicsdb.a -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/lib/x86_64-linux-gnu/libgenomicsdb.so.1.5.4 -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/lib/x86_64-linux-gnu/libgenomicsdb.so.1 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/lib/x86_64-linux-gnu/libgenomicsdb.so.1.5.4" to "/usr/lib/x86_64-linux-gnu/genomicsdb" -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/lib/x86_64-linux-gnu/libgenomicsdb.so -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb_exception.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb_status.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb_utils.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/genomicsdb.pc -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/test_genomicsdb_demo -- Set non-toolchain portion of runtime path of "/build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/test_genomicsdb_demo" to "/usr/lib/x86_64-linux-gnu/genomicsdb" -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/create_genomicsdb_workspace -- Set non-toolchain portion of runtime path of "/build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/create_genomicsdb_workspace" to "/usr/lib/x86_64-linux-gnu/genomicsdb" -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/vcf2genomicsdb_init -- Set non-toolchain portion of runtime path of "/build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/vcf2genomicsdb_init" to "/usr/lib/x86_64-linux-gnu/genomicsdb" -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/vcf2genomicsdb -- Set non-toolchain portion of runtime path of "/build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/vcf2genomicsdb" to "/usr/lib/x86_64-linux-gnu/genomicsdb" -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/consolidate_genomicsdb_array -- Set non-toolchain portion of runtime path of "/build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/consolidate_genomicsdb_array" to "/usr/lib/x86_64-linux-gnu/genomicsdb" -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/gt_mpi_gather -- Set non-toolchain portion of runtime path of "/build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/gt_mpi_gather" to "/usr/lib/x86_64-linux-gnu/genomicsdb" -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/vcfdiff -- Set non-toolchain portion of runtime path of "/build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/vcfdiff" to "/usr/lib/x86_64-linux-gnu/genomicsdb" -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/vcf_histogram -- Set non-toolchain portion of runtime path of "/build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/vcf_histogram" to "/usr/lib/x86_64-linux-gnu/genomicsdb" -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/test_genomicsdb_bcf_generator -- Set non-toolchain portion of runtime path of "/build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/test_genomicsdb_bcf_generator" to "/usr/lib/x86_64-linux-gnu/genomicsdb" -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/test_genomicsdb_importer -- Set non-toolchain portion of runtime path of "/build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/bin/test_genomicsdb_importer" to "/usr/lib/x86_64-linux-gnu/genomicsdb" make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake debian/rules execute_after_dh_install-arch make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5' # Setting the runpath of the jni library to only contain the path to the private libs. chrpath -r "/usr/lib/x86_64-linux-gnu/genomicsdb" /build/reproducible-path/genomicsdb-1.5.5/debian/libgenomicsdb-jni/usr/lib/jni/libgenomicsdbjni.so /build/reproducible-path/genomicsdb-1.5.5/debian/libgenomicsdb-jni/usr/lib/jni/libgenomicsdbjni.so: RUNPATH=/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/usr/lib/x86_64-linux-gnu/openmpi/lib:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.5/debian/libgenomicsdb-jni/usr/lib/jni/libgenomicsdbjni.so: new RUNPATH: /usr/lib/x86_64-linux-gnu/genomicsdb make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' jh_installjavadoc -O--buildsystem=cmake Duplicate specification "A" for option "A" dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake jh_installlibs -O--buildsystem=cmake jh_classpath -O--buildsystem=cmake Duplicate specification "version|V" for option "V" jh_manifest -O--buildsystem=cmake Duplicate specification "V:s" for option "V" jh_exec -O--buildsystem=cmake jh_depends -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dwz: debian/libgenomicsdb1/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-hts.so: DWARF compression not beneficial - old size 855328 new size 870880 dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: debian/libgenomicsdb1/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-hts.so contains an unresolvable reference to symbol inflate: it's probably a plugin dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: Depends field of package libgenomicsdb-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libgenomicsdb-java: substitution variable ${maven:CompileDepends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'libgenomicsdb-java' in '../libgenomicsdb-java_1.5.5-1_all.deb'. dpkg-deb: building package 'libgenomicsdb-jni' in '../libgenomicsdb-jni_1.5.5-1_amd64.deb'. dpkg-deb: building package 'libgenomicsdb-jni-dbgsym' in '../libgenomicsdb-jni-dbgsym_1.5.5-1_amd64.deb'. dpkg-deb: building package 'genomicsdb-tools' in '../genomicsdb-tools_1.5.5-1_amd64.deb'. dpkg-deb: building package 'genomicsdb-tools-dbgsym' in '../genomicsdb-tools-dbgsym_1.5.5-1_amd64.deb'. dpkg-deb: building package 'libgenomicsdb1-dbgsym' in '../libgenomicsdb1-dbgsym_1.5.5-1_amd64.deb'. dpkg-deb: building package 'libgenomicsdb1' in '../libgenomicsdb1_1.5.5-1_amd64.deb'. dpkg-deb: building package 'libgenomicsdb-dev' in '../libgenomicsdb-dev_1.5.5-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../genomicsdb_1.5.5-1_amd64.buildinfo dpkg-genchanges --build=binary -O../genomicsdb_1.5.5-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/509046 and its subdirectories I: Current time: Tue Oct 20 18:47:17 -12 2026 I: pbuilder-time-stamp: 1792565237 Thu Sep 18 00:24:19 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Thu Sep 18 00:24:19 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Thu Sep 18 00:41:30 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Thu Sep 18 00:41:30 UTC 2025 I: genomicsdb_1.5.5-1_amd64.changes: Format: 1.8 Date: Sat, 30 Aug 2025 14:30:34 +0200 Source: genomicsdb Binary: genomicsdb-tools genomicsdb-tools-dbgsym libgenomicsdb-dev libgenomicsdb-java libgenomicsdb-jni libgenomicsdb-jni-dbgsym libgenomicsdb1 libgenomicsdb1-dbgsym Architecture: amd64 all Version: 1.5.5-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: genomicsdb-tools - sparse array storage library for genomics (tools) libgenomicsdb-dev - sparse array storage library for genomics (development files) libgenomicsdb-java - sparse array storage library for genomics (Java library) libgenomicsdb-jni - sparse array storage library for genomics (Java native bindings) libgenomicsdb1 - sparse array storage library for genomics (shared libraries) Changes: genomicsdb (1.5.5-1) unstable; urgency=medium . * New upstream version 1.5.5 * Refreshing patches * Raising Standards version to 4.7.2 (no change) Checksums-Sha1: 224e0153a89f499f995149c91626ce059fd7bb4e 107319180 genomicsdb-tools-dbgsym_1.5.5-1_amd64.deb 7354866055723fa3d5ef5d5aad74329d7db6b4a8 1594736 genomicsdb-tools_1.5.5-1_amd64.deb 7945652a548c226b0a37ea74f5dc9888f4070884 21819 genomicsdb_1.5.5-1_amd64.buildinfo cbded2d844001967e81e279f9e9f9d41d48aa690 2036484 libgenomicsdb-dev_1.5.5-1_amd64.deb ba54e1b7a08f81cc05521fc5cc9fe9a71825db57 409712 libgenomicsdb-java_1.5.5-1_all.deb 2cb2dfdbc7999f802356773fe96caee8017f5c40 2049788 libgenomicsdb-jni-dbgsym_1.5.5-1_amd64.deb 69fc26606278c6aa4366b8aa4273eaa746dfe2d3 86396 libgenomicsdb-jni_1.5.5-1_amd64.deb cc2af0bc262d0ec44547a797ee8f99ccb4c83a94 37861044 libgenomicsdb1-dbgsym_1.5.5-1_amd64.deb 7add48ea478d0db67df2db9a5fd7add664ba7d29 1641360 libgenomicsdb1_1.5.5-1_amd64.deb Checksums-Sha256: af2e5df1d24980e3bdbe83e83a0daa12bf43b8a7254a3618092b4062cb62d149 107319180 genomicsdb-tools-dbgsym_1.5.5-1_amd64.deb 005a82cfe23a50201b004a1679a881e6c0a40f6f93b724e81d4eae3895d3cafa 1594736 genomicsdb-tools_1.5.5-1_amd64.deb 9cd7bed270ad4c944451df8566f7f20df70a78ad11a74cd5671f46d49ba5b049 21819 genomicsdb_1.5.5-1_amd64.buildinfo d4b5c2881d7d9b8904c3e7e9cead934d1f22b53f1fd87184935d45f32f0ffaff 2036484 libgenomicsdb-dev_1.5.5-1_amd64.deb bda253f13ff35f19fef97259179f890d938e45dc7b1c6a2522d445e8c7c6f98d 409712 libgenomicsdb-java_1.5.5-1_all.deb 1aaf3a0a5aaa4382bd553d5bf8f49aa1b9b4c5778f143cb1c555e08881ab4743 2049788 libgenomicsdb-jni-dbgsym_1.5.5-1_amd64.deb 78f7e8c9e0643b14449ab774f9e195cbace5d2dfc8b4da0c6795935df8e7696a 86396 libgenomicsdb-jni_1.5.5-1_amd64.deb 3a78919c780abfb09b49c8e369c542db9c9c0454b6bc5f6418799f0ecb7b926d 37861044 libgenomicsdb1-dbgsym_1.5.5-1_amd64.deb d198e00cf5fa22fc27f9d461ac47dc46cc0833559c447ed480a55b13922977b2 1641360 libgenomicsdb1_1.5.5-1_amd64.deb Files: a2ad2077ca0a86428f8b4fe628a54e35 107319180 debug optional genomicsdb-tools-dbgsym_1.5.5-1_amd64.deb e1d868aeaa959d192964a70318dd81d5 1594736 science optional genomicsdb-tools_1.5.5-1_amd64.deb f670a7a79052564bdb2c8db85596e7b6 21819 science optional genomicsdb_1.5.5-1_amd64.buildinfo f3fc905eab51ba5fc5ed2b0d0f39ed0b 2036484 libdevel optional libgenomicsdb-dev_1.5.5-1_amd64.deb c2df8d83f21fa971beba345321195426 409712 java optional libgenomicsdb-java_1.5.5-1_all.deb 9c90096f0b7ddf9cf8c31c34293a0868 2049788 debug optional libgenomicsdb-jni-dbgsym_1.5.5-1_amd64.deb 46bb700d8aed9aad60e9c06e30d58379 86396 java optional libgenomicsdb-jni_1.5.5-1_amd64.deb b7cccdf8af0e6a575d92d756e78e5422 37861044 debug optional libgenomicsdb1-dbgsym_1.5.5-1_amd64.deb 67e393f31d908fd2cfa5e8059a093324 1641360 libs optional libgenomicsdb1_1.5.5-1_amd64.deb Thu Sep 18 00:41:31 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_22-58932.service; invocation ID: 055c84778a1547fda349569b2f0273a1 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.bbem8Wcv/genomicsdb_1.5.5-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.bbem8Wcv/genomicsdb_1.5.5-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.bbem8Wcv/genomicsdb_1.5.5-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.bbem8Wcv/b1/genomicsdb_1.5.5-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.bbem8Wcv/b2/genomicsdb_1.5.5-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 210ms CPU time consumed: 172ms Memory peak: 17.7M (swap: 0B) Thu Sep 18 00:41:32 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Thu Sep 18 00:41:32 UTC 2025 I: genomicsdb from forky built successfully and reproducibly on amd64. Thu Sep 18 00:41:33 UTC 2025 I: Removing signed genomicsdb_1.5.5-1_amd64.buildinfo.asc files: removed './b1/genomicsdb_1.5.5-1_amd64.buildinfo.asc' removed './b2/genomicsdb_1.5.5-1_amd64.buildinfo.asc'