Tue Aug 26 21:16:39 UTC 2025 I: starting to build libgenome/forky/amd64 on jenkins on '2025-08-26 21:16' Tue Aug 26 21:16:39 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_24/71400/console.log Tue Aug 26 21:16:39 UTC 2025 I: Downloading source for forky/libgenome=1.3.11+svn20110227.4616-6 --2025-08-26 21:16:39-- http://deb.debian.org/debian/pool/main/libg/libgenome/libgenome_1.3.11%2bsvn20110227.4616-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2329 (2.3K) [text/prs.lines.tag] Saving to: ‘libgenome_1.3.11+svn20110227.4616-6.dsc’ 0K .. 100% 271M=0s 2025-08-26 21:16:39 (271 MB/s) - ‘libgenome_1.3.11+svn20110227.4616-6.dsc’ saved [2329/2329] Tue Aug 26 21:16:40 UTC 2025 I: libgenome_1.3.11+svn20110227.4616-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libgenome Binary: libgenome-dev, libgenome0 Architecture: any Version: 1.3.11+svn20110227.4616-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://sourceforge.net/projects/libgenome/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libgenome Vcs-Git: https://salsa.debian.org/med-team/libgenome.git Build-Depends: debhelper-compat (= 13), d-shlibs Package-List: libgenome-dev deb libdevel optional arch=any libgenome0 deb libs optional arch=any Checksums-Sha1: ff883500ecf525a078e542ba2eacf7918f7a02f8 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz 59be97f5a108ea65aab8e094e87cf864c7aefc4b 11012 libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz Checksums-Sha256: a2ca77c2a4e9c6239d9cc2fd84b84ffa75444283e3c3d34f8e724525b6a1b677 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz d9acd8439aa96fd9a03715c627aecd74c2e36e1cb06605b692d28e4987e139a7 11012 libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz Files: 505900cdacc864d2a52847ff47b8ae37 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz 041b4257884c07dcbb7cf981aa66c377 11012 libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz Dgit: 86e25e54e7ab9b1c72b06b9d927b5be88681719e debian archive/debian/1.3.11+svn20110227.4616-6 https://git.dgit.debian.org/libgenome -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmS2joIUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrYpQ/9GmfxAx9Kn/A03Txzsgh5gI0HZwWR E9IKx/Le6uGfYME9Km2/QNJuxlaRRDxyeaRf6UQP+uQrPUGNfUc2UjlhOrwS8bB1 8HZiuvFpjSMX8tJFC8m7YFMn8/60FosR2MscU44+QHxM1HVf0AJdzeYG2cmlBdxc gou51jSb7dVUwE3XpokVoz/uLYCAihgkwCr4dW29HTmesZXIlk0QlU4Iago3m9OK J8lIetzln44h/sXQZ4YgkiUsJGDE3Rg60NPqj2iE9G3zPhtRHGa6sVvN9ZRgeVf0 HCgNnffxXvNWjCNQ2lyIDAbCeb0SWHzbJ9Arl/KqueNtuHEiQ5MYd/cSa0611dUS Eei9E3hEwHjFBSlqByV3ppbKnaIP8SS85cGyhIVozSpbD17zySMbEwouf2+hNzy4 t1pasoU23xze2Tvkbe0UJpXxc06zGIsMFYg3RYffjqTk3knPdAcyHC/pd5hQ5BNM rMz1L+WSIjfc7lINFH2Ek8Iw1SB+Mqh/ze8cZW4mE7baZUiDjrcR3RYB0CbMVCrb GITtKeN98DBRw/umZoLKpMTkgVvPn0gR6ZVzIMQtYPOSSGytZWcFrcwbedLI4rf2 54RK9+qv3SuVr1UvfBaoqet8nSCnDQuZ1RNcqUPkLqMdMEuXlz/0gAfi7JGfJKPJ s/g6NRO6gkP4HWA= =ZSy4 -----END PGP SIGNATURE----- Tue Aug 26 21:16:40 UTC 2025 I: Checking whether the package is not for us Tue Aug 26 21:16:40 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Tue Aug 26 21:16:40 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Tue Aug 26 21:19:18 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Sep 28 15:39:40 -12 2026 I: pbuilder-time-stamp: 1790653180 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libgenome_1.3.11+svn20110227.4616-6.dsc] I: copying [./libgenome_1.3.11+svn20110227.4616.orig.tar.xz] I: copying [./libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libgenome_1.3.11+svn20110227.4616-6.dsc: no acceptable signature found dpkg-source: info: extracting libgenome in libgenome-1.3.11+svn20110227.4616 dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616.orig.tar.xz dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-6.1.patch dpkg-source: info: applying drop-version-number.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4150744/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f55c0b4308464c75b5fb7051be231475' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4150744' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JTPhK7Xs/pbuilderrc_BSmD --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JTPhK7Xs/b1 --logfile b1/build.log libgenome_1.3.11+svn20110227.4616-6.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4150744/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19855 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.25 [91.6 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-4 [539 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.1 [640 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 debhelper all 13.25 [937 kB] Fetched 11.2 MB in 0s (46.7 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19855 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-1_amd64.deb ... Unpacking bsdextrautils (2.41.1-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../15-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.25_all.deb ... Unpacking libdebhelper-perl (13.25) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../24-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../25-libxml2-16_2.14.5+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.25_all.deb ... Unpacking debhelper (13.25) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.1) ... Setting up libdebhelper-perl (13.25) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up d-shlibs (0.109) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.25) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgenome_1.3.11+svn20110227.4616-6_source.changes dpkg-buildpackage: info: source package libgenome dpkg-buildpackage: info: source version 1.3.11+svn20110227.4616-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:61: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:429: AM_INIT_AUTOMAKE is expanded from... configure.ac:61: the top level configure.ac:70: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:70: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:70: the top level configure.ac:73: warning: The macro 'AM_PROG_LIBTOOL' is obsolete. configure.ac:73: You should run autoupdate. m4/libtool.m4:101: AM_PROG_LIBTOOL is expanded from... configure.ac:73: the top level configure.ac:77: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:77: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:77: the top level configure.ac:99: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:99: You should use the 'AC_CONFIG_HEADERS' macro instead. aclocal.m4:707: AM_CONFIG_HEADER is expanded from... configure.ac:99: the top level configure.ac:116: warning: The macro 'AC_HEADER_TIME' is obsolete. configure.ac:116: You should run autoupdate. ./lib/autoconf/headers.m4:702: AC_HEADER_TIME is expanded from... configure.ac:116: the top level configure.ac:119: warning: The macro 'AC_PROG_GCC_TRADITIONAL' is obsolete. configure.ac:119: You should run autoupdate. ./lib/autoconf/c.m4:1676: AC_PROG_GCC_TRADITIONAL is expanded from... configure.ac:119: the top level configure.ac:124: warning: AC_OUTPUT should be used without arguments. configure.ac:124: You should run autoupdate. configure.ac:61: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:61: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:68: installing 'config/compile' configure.ac:8: installing 'config/config.guess' configure.ac:8: installing 'config/config.sub' configure.ac:61: installing 'config/install-sh' configure.ac:61: installing 'config/missing' Makefile.am: installing './INSTALL' Makefile.am: installing './COPYING' using GNU General Public License v3 file Makefile.am: Consider adding the COPYING file to the version control system Makefile.am: for your code, to avoid questions about which license your project uses libGenome/Makefile.am:44: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') libGenome/Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether ln -s works... yes checking for -Wdate-time -D_FORTIFY_SOURCE=2 option for large files... none needed checking for egrep... (cached) /usr/bin/grep -E checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/bin/perl checking for an ANSI C-conforming const... yes checking for inline... inline checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libGenome/Makefile config.status: creating libGenome.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make all-recursive make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' Making all in libGenome make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. 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gnFileContig.cpp -fPIC -DPIC -o .libs/gnFileContig.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFeature.cpp -fPIC -DPIC -o .libs/gnFeature.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFilter.cpp -fPIC -DPIC -o .libs/gnFilter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnGenomeSpec.cpp -fPIC -DPIC -o .libs/gnGenomeSpec.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnTranslator.cpp -fPIC -DPIC -o .libs/gnTranslator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSourceSpec.cpp -fPIC -DPIC -o .libs/gnSourceSpec.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSourceFactory.cpp -fPIC -DPIC -o .libs/gnSourceFactory.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnCompare.cpp -fPIC -DPIC -o .libs/gnCompare.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSourceQualifier.cpp -fPIC -DPIC -o .libs/gnSourceQualifier.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSourceHeader.cpp -fPIC -DPIC -o .libs/gnSourceHeader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFileSource.cpp -fPIC -DPIC -o .libs/gnFileSource.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnStringSpec.cpp -fPIC -DPIC -o .libs/gnStringSpec.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnException.cpp -fPIC -DPIC -o .libs/gnException.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnLocation.cpp -fPIC -DPIC -o .libs/gnLocation.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnRAWSource.cpp -fPIC -DPIC -o .libs/gnRAWSource.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFASSource.cpp -fPIC -DPIC -o .libs/gnFASSource.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFastTranslator.cpp -fPIC -DPIC -o .libs/gnFastTranslator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnDefs.cpp -fPIC -DPIC -o .libs/gnDefs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFragmentSpec.cpp -fPIC -DPIC -o .libs/gnFragmentSpec.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnBaseFeature.cpp -fPIC -DPIC -o .libs/gnBaseFeature.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSEQSource.cpp -fPIC -DPIC -o .libs/gnSEQSource.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSequence.cpp -fPIC -DPIC -o .libs/gnSequence.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnGBKSource.cpp -fPIC -DPIC -o .libs/gnGBKSource.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnStringTools.cpp -fPIC -DPIC -o .libs/gnStringTools.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnContigSpec.cpp -fPIC -DPIC -o .libs/gnContigSpec.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnPosSpecificTranslator.cpp -fPIC -DPIC -o .libs/gnPosSpecificTranslator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnDefs.cpp -o gnDefs.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnContigSpec.cpp -o gnContigSpec.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFileContig.cpp -o gnFileContig.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSourceQualifier.cpp -o gnSourceQualifier.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnLocation.cpp -o gnLocation.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnStringSpec.cpp -o gnStringSpec.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnPosSpecificTranslator.cpp -o gnPosSpecificTranslator.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnException.cpp -o gnException.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSourceSpec.cpp -o gnSourceSpec.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnSourceHeader.cpp -o gnSourceHeader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFilter.cpp -o gnFilter.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnCompare.cpp -o gnCompare.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFileSource.cpp -o gnFileSource.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFeature.cpp -o gnFeature.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnStringTools.cpp -o gnStringTools.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFastTranslator.cpp -o gnFastTranslator.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnRAWSource.cpp -o gnRAWSource.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnBaseFeature.cpp -o gnBaseFeature.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnFragmentSpec.cpp -o gnFragmentSpec.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c gnGenomeSpec.cpp -o gnGenomeSpec.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 1:3:1 -Wl,-z,relro -Wl,-z,now -o libGenome.la -rpath /usr/lib/x86_64-linux-gnu gnFilter.lo gnCompare.lo gnTranslator.lo gnSourceFactory.lo gnFeature.lo gnSourceQualifier.lo gnFileContig.lo gnSourceSpec.lo gnFileSource.lo gnFASSource.lo gnFragmentSpec.lo gnStringSpec.lo gnGBKSource.lo gnStringTools.lo gnGenomeSpec.lo gnLocation.lo gnRAWSource.lo gnBaseFeature.lo gnSEQSource.lo gnSequence.lo gnContigSpec.lo gnSourceHeader.lo gnException.lo gnFastTranslator.lo gnPosSpecificTranslator.lo gnDefs.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o .libs/gnFilter.o .libs/gnCompare.o .libs/gnTranslator.o .libs/gnSourceFactory.o .libs/gnFeature.o .libs/gnSourceQualifier.o .libs/gnFileContig.o .libs/gnSourceSpec.o .libs/gnFileSource.o .libs/gnFASSource.o .libs/gnFragmentSpec.o .libs/gnStringSpec.o .libs/gnGBKSource.o .libs/gnStringTools.o .libs/gnGenomeSpec.o .libs/gnLocation.o .libs/gnRAWSource.o .libs/gnBaseFeature.o .libs/gnSEQSource.o .libs/gnSequence.o .libs/gnContigSpec.o .libs/gnSourceHeader.o .libs/gnException.o .libs/gnFastTranslator.o .libs/gnPosSpecificTranslator.o .libs/gnDefs.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libGenome.so.0 -o .libs/libGenome.so.0.1.3 libtool: link: (cd ".libs" && rm -f "libGenome.so.0" && ln -s "libGenome.so.0.1.3" "libGenome.so.0") libtool: link: (cd ".libs" && rm -f "libGenome.so" && ln -s "libGenome.so.0.1.3" "libGenome.so") libtool: link: ar cr .libs/libGenome.a gnFilter.o gnCompare.o gnTranslator.o gnSourceFactory.o gnFeature.o gnSourceQualifier.o gnFileContig.o gnSourceSpec.o gnFileSource.o gnFASSource.o gnFragmentSpec.o gnStringSpec.o gnGBKSource.o gnStringTools.o gnGenomeSpec.o gnLocation.o gnRAWSource.o gnBaseFeature.o gnSEQSource.o gnSequence.o gnContigSpec.o gnSourceHeader.o gnException.o gnFastTranslator.o gnPosSpecificTranslator.o gnDefs.o libtool: link: ranlib .libs/libGenome.a libtool: link: ( cd ".libs" && rm -f "libGenome.la" && ln -s "../libGenome.la" "libGenome.la" ) make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' echo 'Disable test since some header (gnDNXSource.h) seems to be missing.' Disable test since some header (gnDNXSource.h) seems to be missing. make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libgenome-1.3.11\+svn20110227.4616/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' Making install in libGenome make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libGenome.la '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libGenome.so.0.1.3 /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 libtool: install: (cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so.0 || { rm -f libGenome.so.0 && ln -s libGenome.so.0.1.3 libGenome.so.0; }; }) libtool: install: (cd /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so || { rm -f libGenome.so && ln -s libGenome.so.0.1.3 libGenome.so; }; }) libtool: install: /usr/bin/install -c .libs/libGenome.lai /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.la libtool: install: /usr/bin/install -c .libs/libGenome.a /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: install: chmod 644 /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: install: ranlib /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnABISource.h gnDataBaseSource.h gnLocation.h gnSetup.h gnBaseFeature.h gnDebug.h gnMultiSpec.h gnSourceFactory.h gnBaseFilter.h gnDefs.h gnSourceHeader.h gnPosSpecificTranslator.h gnBaseHeader.h gnFASSource.h gnSourceQualifier.h gnBaseQualifier.h gnSourceSpec.h gnStringQualifier.h gnBaseSource.h gnFeature.h gnProteinSequence.h gnStringHeader.h gnBaseSpec.h gnFileContig.h gnRAWSource.h gnClone.h gnFileSource.h gnRNASequence.h gnStringSpec.h gnCompare.h gnFilter.h gnSEQSource.h gnStringTools.h gnContigSpec.h gnFragmentSpec.h gnTranslator.h gnDNASequence.h gnGBKSource.h gnVersion.h gnFastTranslator.h '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnGenomeSpec.h gnSequence.h gnException.h gnExceptionCode.h IntervalSequenceTree.h OmpGuard.h '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libGenome.pc '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' dh_install # Call d-shlibmove to comply with library packaging guide # mv debian/tmp/usr/include/*/* debian/tmp/usr/include/ d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libgenome0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0 debian/libgenome0/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 debian/libgenome0/usr/lib/x86_64-linux-gnu PKGDEV=libgenome-dev PKGSHL=libgenome0 install -d -m 755 debian/libgenome-dev/usr/include mv debian/tmp/usr/include/libGenome debian/libgenome-dev/usr/include install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name libGenome.la -delete make[1]: Leaving directory '/build/reproducible-path/libgenome-1.3.11+svn20110227.4616' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libgenome0/DEBIAN/symbols doesn't match completely debian/libgenome0.symbols.amd64 --- debian/libgenome0.symbols.amd64 (libgenome0_1.3.11+svn20110227.4616-6_amd64) +++ dpkg-gensymbolsH_YKp9 2026-09-29 03:42:08.063106401 +0000 @@ -626,56 +626,68 @@ (optional)_ZNSt12_Vector_baseIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt12_Vector_baseIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt12_Vector_baseIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIN6genome10gnLocationESaIS1_EE17_M_realloc_appendIJRKS1_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EED1Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIN6genome10gnLocationESaIS1_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJRKS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS5_S7_EERSA_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS5_S7_EERSA_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS2_S4_EERS7_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS2_S4_EERS7_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIySaIyEE17_M_realloc_insertIJyEEEvN9__gnu_cxx17__normal_iteratorIPyS1_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_appendIJRKS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 + _ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_appendIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIjSaIjEE17_M_realloc_appendIJRKjEEEvDpOT_@Base 1.3.11+svn20110227.4616-6 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt6vectorIySaIyEE17_M_realloc_insertIJyEEEvN9__gnu_cxx17__normal_iteratorIPyS1_EEDpOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1110_List_baseINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_clearEv@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1110_List_baseIPKN6genome12gnBaseFilterESaIS4_EE8_M_clearEv@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE16_M_insert_uniqueISB_EES6_ISt17_Rb_tree_iteratorISB_EbEOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 1.3.11+svn20110227.4616 (optional)_ZSt16__do_uninit_copyIPKN6genome10gnLocationEPS1_ET0_T_S6_S5_@Base 1.3.11+svn20110227.4616 - (optional)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EES5_RKS8_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-6# (optional)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EES5_RKS8_@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnBaseSpecE@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnLocationE@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnSequenceE@Base 1.3.11+svn20110227.4616 dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgenome-dev' in '../libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-deb: building package 'libgenome0' in '../libgenome0_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-deb: building package 'libgenome0-dbgsym' in '../libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo dpkg-genchanges --build=binary -O../libgenome_1.3.11+svn20110227.4616-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4150744 and its subdirectories I: Current time: Mon Sep 28 15:42:16 -12 2026 I: pbuilder-time-stamp: 1790653336 Tue Aug 26 21:19:19 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Tue Aug 26 21:19:19 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Tue Aug 26 21:20:27 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Tue Aug 26 21:20:28 UTC 2025 I: libgenome_1.3.11+svn20110227.4616-6_amd64.changes: Format: 1.8 Date: Tue, 18 Jul 2023 14:57:43 +0200 Source: libgenome Binary: libgenome-dev libgenome0 libgenome0-dbgsym Architecture: amd64 Version: 1.3.11+svn20110227.4616-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libgenome-dev - toolkit for developing bioinformatic related software (devel) libgenome0 - toolkit for developing bioinformatic related software Closes: 1015488 1037728 Changes: libgenome (1.3.11+svn20110227.4616-6) unstable; urgency=medium . * d/libgenome0.symbols.amd64: update. Mark symbols optimized out by LTO as optional. This has also the side effect of resolving build issues encountered with Gcc 13. (Closes: #1015488, #1037728) * d/control: declare compliance to standards version 4.6.2. Checksums-Sha1: 6d1d7ffd0d010ca02ecfd906a8cfd87e08921559 187652 libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb 33212c33e32e3557b49bdaef999ca71c316460a9 1790160 libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb fdc97358c371a2abaf42e1abbe0e27abd0a8da73 123720 libgenome0_1.3.11+svn20110227.4616-6_amd64.deb 06559360b718c82067ea537fa5921167de186e60 5789 libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo Checksums-Sha256: ae82618930435ac71946369967792cad9041edc492e21a2034e272cf60cd7b8e 187652 libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb 4a0fc3607771e97acafbfd68b5357094fff1d96492d8b695d5977487f936419c 1790160 libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb 376e328a8f8a4f50b66450a4ccbd207eb11384f59add64df5e617a4259b495b5 123720 libgenome0_1.3.11+svn20110227.4616-6_amd64.deb 95e5764a3d82a87ae5b40b0648224e3d89e75ab2d80e9b496f6a596f15faf9cd 5789 libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo Files: f41f500be441ccedf6eb3f67c2aad600 187652 libdevel optional libgenome-dev_1.3.11+svn20110227.4616-6_amd64.deb 1459c788e898fe17adf5853cb5429680 1790160 debug optional libgenome0-dbgsym_1.3.11+svn20110227.4616-6_amd64.deb 637736f2366260d3710e000b97604851 123720 libs optional libgenome0_1.3.11+svn20110227.4616-6_amd64.deb ee57ad4d74c03210e8e77ec42a8d996e 5789 science optional libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo Tue Aug 26 21:20:29 UTC 2025 I: diffoscope 305 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_24-71400.service; invocation ID: b3f984e2add44038aeb66907c044d18f # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.JTPhK7Xs/libgenome_1.3.11+svn20110227.4616-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.JTPhK7Xs/libgenome_1.3.11+svn20110227.4616-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.JTPhK7Xs/libgenome_1.3.11+svn20110227.4616-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.JTPhK7Xs/b1/libgenome_1.3.11+svn20110227.4616-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.JTPhK7Xs/b2/libgenome_1.3.11+svn20110227.4616-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 202ms CPU time consumed: 170ms Memory peak: 18M (swap: 0B) Tue Aug 26 21:20:29 UTC 2025 I: diffoscope 305 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 26 21:20:29 UTC 2025 I: libgenome from forky built successfully and reproducibly on amd64. Tue Aug 26 21:20:30 UTC 2025 I: Removing signed libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc files: removed './b1/libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc' removed './b2/libgenome_1.3.11+svn20110227.4616-6_amd64.buildinfo.asc'