Sun Sep 14 05:29:31 UTC 2025 I: starting to build libtfbs-perl/forky/amd64 on jenkins on '2025-09-14 05:29' Sun Sep 14 05:29:31 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_10/53386/console.log Sun Sep 14 05:29:31 UTC 2025 I: Downloading source for forky/libtfbs-perl=0.7.1+ds-5 --2025-09-14 05:29:31-- http://deb.debian.org/debian/pool/main/libt/libtfbs-perl/libtfbs-perl_0.7.1%2bds-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2429 (2.4K) [text/prs.lines.tag] Saving to: ‘libtfbs-perl_0.7.1+ds-5.dsc’ 0K .. 100% 282M=0s 2025-09-14 05:29:31 (282 MB/s) - ‘libtfbs-perl_0.7.1+ds-5.dsc’ saved [2429/2429] Sun Sep 14 05:29:31 UTC 2025 I: libtfbs-perl_0.7.1+ds-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libtfbs-perl Binary: libtfbs-perl Architecture: any Version: 0.7.1+ds-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: http://tfbs.genereg.net Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/libtfbs-perl Vcs-Git: https://salsa.debian.org/med-team/libtfbs-perl.git Testsuite: autopkgtest Testsuite-Triggers: libgd-gd2-perl, pkg-perl-autopkgtest, pkg-perl-autopkgtest-heavy Build-Depends: debhelper-compat (= 13), dh-sequence-pdl, perl:native, perl-xs-dev, pdl (>= 1:2.016), libcrypt-dev, bioperl, libwww-perl , libdbi-perl Package-List: libtfbs-perl deb perl optional arch=any Checksums-Sha1: 8906681164013dda04cfabdb52b2d5667e5a972b 196444 libtfbs-perl_0.7.1+ds.orig.tar.xz 5b9fbb109e2e9a69a8a52087482163f1839e7a32 12884 libtfbs-perl_0.7.1+ds-5.debian.tar.xz Checksums-Sha256: 4720e694e55b9df9c9732f4e93102882005666019c49652000d1230244929e73 196444 libtfbs-perl_0.7.1+ds.orig.tar.xz cbd9b1eaa3ed58deab9658f7ef0ae7dd47239ef7b1b0354b43db84794a8ed424 12884 libtfbs-perl_0.7.1+ds-5.debian.tar.xz Files: 77cf0f26efb308a11b8d9e0fdb600fa4 196444 libtfbs-perl_0.7.1+ds.orig.tar.xz 5dd7d527b4e9ed4874fe3b8444d486f0 12884 libtfbs-perl_0.7.1+ds-5.debian.tar.xz Dgit: 162200f966bcca633099bc0f44ba91e35b5e8a32 debian archive/debian/0.7.1+ds-5 https://git.dgit.debian.org/libtfbs-perl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmjDONYUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqDag/+P2lYEx09aLVk7u7VXDU5MIZUqjLT WzrvrkwahSyIDy/GuZ5Du50GN1tLqhnblca3xrWXYkI321MZ5OAVFh5yiU68j0kQ zTc11h1yVn4XLkl0e7Tfh7PhpPsPdMbUveZ4iPcZyW6JYNkKLqkDtLgCqZcynN5p ptIvA43auLSJAkQdR1gQ4b/J8kQsWNTRj2JoVYKWcdxdcjN8wFZfAZhXMQg0jFh+ tGoX5tFlXdhZpbUisfDdwg3H+DiigfUfmt/mYwL/9zztt9WVdJLGNiB5EuT1mSqD R9O627S0RTBTHasEgmZpAYW71veLLjSoxAHpX1bVV5uyxUaE5zWsGUXO4XD+bNPZ Jnk3H8bCdYD8Deft3hI23jV68wV7w5XbqDjkgt3SL/LvWhzV9NaHPpsew5zfzELg lsxtteEloyOI/TXSn1B98ujTgj0hIbo9AsA/Hk90NDdpI7/v4PcqL+ZiNA151PNz 68sMA33BOW8g66953KM9ZYr7Mp969hLc8ozxQvgOgQZs6WGCWuUv0cwbR3h9L0AW LsYk2CIRR50Ik8mZmfKRu3rBAaCPnR/YE/HBm3U0DSze2BeXoF70dUQYJEhv9ogP vyTYHLPEmYPr6aMvcDM+xSP7WdwsfWU4YbY5DgatZ4+rM6zTY6jlUw3mhgfIhi0v qFbd6r8904sB+mY= =EW2Y -----END PGP SIGNATURE----- Sun Sep 14 05:29:31 UTC 2025 I: Checking whether the package is not for us Sun Sep 14 05:29:31 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sun Sep 14 05:29:31 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sun Sep 14 05:31:10 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 16 23:52:32 -12 2026 I: pbuilder-time-stamp: 1792237952 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libtfbs-perl_0.7.1+ds-5.dsc] I: copying [./libtfbs-perl_0.7.1+ds.orig.tar.xz] I: copying [./libtfbs-perl_0.7.1+ds-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libtfbs-perl_0.7.1+ds-5.dsc: no acceptable signature found dpkg-source: info: extracting libtfbs-perl in libtfbs-perl-0.7.1+ds dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds.orig.tar.xz dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying configure.patch dpkg-source: info: applying spelling-errors.patch dpkg-source: info: applying dpkg-1.22.6.patch dpkg-source: info: applying gcc-14.patch dpkg-source: info: applying gcc-15.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4073987/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='7ea1d6ef12fc42a08461117ca10e0e1f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4073987' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NFpNGQwN/pbuilderrc_a0k2 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NFpNGQwN/b1 --logfile b1/build.log libtfbs-perl_0.7.1+ds-5.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4073987/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-pdl, perl:native, perl-xs-dev, pdl (>= 1:2.016), libcrypt-dev, bioperl, libwww-perl, libdbi-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-pdl; however: Package dh-sequence-pdl is not installed. pbuilder-satisfydepends-dummy depends on perl:native. pbuilder-satisfydepends-dummy depends on perl-xs-dev; however: Package perl-xs-dev is not installed. pbuilder-satisfydepends-dummy depends on pdl (>= 1:2.016); however: Package pdl is not installed. pbuilder-satisfydepends-dummy depends on bioperl; however: Package bioperl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbi-perl; however: Package libdbi-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdbi-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libfile-listing-perl{a} libfile-map-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libperl-dev{a} libpipeline1{a} libpod-parser-perl{a} libsub-exporter-progressive-perl{a} libsub-uplevel-perl{a} libterm-readkey-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2-16{a} m4{a} man-db{a} netbase{a} openssl{a} pdl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpdl-filter-perl libpdl-fit-perl libpdl-graphics-trid-perl libpdl-gsl-perl libpdl-io-dicom-perl libpdl-io-envi-perl libpdl-io-gd-perl libpdl-io-hdf-perl libpdl-io-idl-perl libpdl-opt-simplex-perl libpdl-transform-proj4-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libterm-readline-gnu-perl libterm-readline-perl-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 23.1 MB of archives. After unpacking 82.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libbio-perl-perl all 1.7.8-2 [2498 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 23 http://deb.debian.org/debian forky/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 bioperl all 1.7.8-2 [231 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 41 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libdbi-perl amd64 1.647-1 [861 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 56 http://deb.debian.org/debian forky/main amd64 libfile-map-perl amd64 0.71-2 [29.4 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 68 http://deb.debian.org/debian forky/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libio-socket-ssl-perl all 2.095-1 [226 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libwww-perl all 6.78-1 [183 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libperl-dev amd64 5.40.1-6 [1109 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 pdl amd64 1:2.100-1 [3128 kB] Fetched 23.1 MB in 0s (104 MB/s) Preconfiguring packages ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. 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Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libio-html-perl (1.004-3) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.16-2) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.5) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-2) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up openssl (3.5.2-1) ... Setting up liburi-perl (5.30-1) ... Setting up libdbi-perl:amd64 (1.647-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.5.4-5) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up libfile-map-perl (0.71-2) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-9) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up libio-socket-ssl-perl (2.095-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up pdl (1:2.100-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up bioperl (1.7.8-2) ... Setting up debhelper (13.26) ... Setting up libwww-perl (6.78-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libtfbs-perl-0.7.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libtfbs-perl_0.7.1+ds-5_source.changes dpkg-buildpackage: info: source package libtfbs-perl dpkg-buildpackage: info: source version 0.7.1+ds-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" ------------------------------------------------- WARNING ------------------------------------------------- GD.pm does not seem to be installed. GD is reqired to produce "sequence logos" from information content matrices. If you need this functionality, please visit http://stein.cshl.org/WWW/software/GD/ for information on obtaining and installing GD. ------------------------------------------------- Do you have write access to a MySQL database server? [n] Checking if your kit is complete... Warning: the following files are missing in your kit: README Please inform the author. Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for TFBS Writing MYMETA.yml and MYMETA.json dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' make[2]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' Running Mkbootstrap for pwmsearch () "/usr/bin/perl" "/usr/share/perl/5.40.1/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.40/ExtUtils/typemap' pwmsearch.xs > pwmsearch.xsc chmod 644 "pwmsearch.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644 Skip ../blib/lib/TFBS/Ext/pwmsearch.pm (unchanged) Skip ../blib/lib/pwm_search.h (unchanged) cp lib/pwm_searchPFF.c ../blib/lib/pwm_searchPFF.c Skip blib/lib/TFBS/Site.pm (unchanged) cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm Skip blib/lib/TFBS/Tools/SetOperations.pm (unchanged) cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm Skip blib/lib/TFBS/Matrix/_Alignment.pm (unchanged) Skip blib/lib/TFBS/SiteSet.pm (unchanged) cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm Skip blib/lib/TFBS/PatternGen/MEME.pm (unchanged) cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm cp TFBS/DB/JASPAR7.pm blib/lib/TFBS/DB/JASPAR7.pm Skip blib/lib/TFBS/PatternGen/Gibbs/Motif.pm (unchanged) Skip blib/lib/TFBS/PatternGen/Motif/Matrix.pm (unchanged) Skip blib/lib/TFBS/PatternGen/Gibbs.pm (unchanged) cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm Skip blib/lib/TFBS/PatternGen/YMF/Motif.pm (unchanged) cp TFBS/DB/JASPAR6.pm blib/lib/TFBS/DB/JASPAR6.pm Skip blib/lib/TFBS/PatternGen/Motif/Word.pm (unchanged) Skip blib/lib/TFBS/SitePairSet.pm (unchanged) Skip blib/lib/TFBS/DB/LocalTRANSFAC.pm (unchanged) Skip blib/lib/TFBS/PatternI.pm (unchanged) cp TFBS/DB/FlatFileDir.pm blib/lib/TFBS/DB/FlatFileDir.pm Skip blib/lib/TFBS/DB.pm (unchanged) Skip blib/lib/TFBS/PatternGen/SimplePFM.pm (unchanged) cp TFBS/README.md blib/lib/TFBS/README.md Skip blib/lib/TFBS/PatternGen/MEME/Motif.pm (unchanged) cp TFBS/PatternGen/AnnSpec.pm blib/lib/TFBS/PatternGen/AnnSpec.pm cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm Skip blib/lib/TFBS/Matrix/PWM.pm (unchanged) cp TFBS/Matrix/ICM.pm blib/lib/TFBS/Matrix/ICM.pm cp TFBS/DB/TRANSFAC.pm blib/lib/TFBS/DB/TRANSFAC.pm cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm Skip blib/lib/TFBS/DB/JASPAR2.pm (unchanged) Skip blib/lib/TFBS/PatternGen/Elph/Motif.pm (unchanged) Skip blib/lib/TFBS/PatternGen/AnnSpec/Motif.pm (unchanged) Skip blib/lib/TFBS/PatternGen/Elph.pm (unchanged) Skip blib/lib/TFBS/PatternGenI.pm (unchanged) cp TFBS/PatternGen.pm blib/lib/TFBS/PatternGen.pm cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm Please specify prototyping behavior for pwmsearch.xs (see perlxs manual) mv pwmsearch.xsc pwmsearch.c cp TFBS/_Iterator/_MatrixSetIterator.pm blib/lib/TFBS/_Iterator/_MatrixSetIterator.pm cp TFBS/_Iterator/_SiteSetIterator.pm blib/lib/TFBS/_Iterator/_SiteSetIterator.pm Skip blib/lib/TFBS/_Iterator.pm (unchanged) Skip blib/lib/TFBS/Word.pm (unchanged) Skip blib/lib/TFBS/Word/Consensus.pm (unchanged) x86_64-linux-gnu-gcc -c -I. -I./lib -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.2\" -DXS_VERSION=\"0.2\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE" pwmsearch.c In file included from pwmsearch.xs:4: ./lib/pwm_searchPFF.c: In function 'announce': ./lib/pwm_searchPFF.c:44:1: warning: old-style function definition [-Wold-style-definition] 44 | announce(msg) | ^~~~~~~~ ./lib/pwm_searchPFF.c: In function 'err_log': ./lib/pwm_searchPFF.c:64:1: warning: old-style function definition [-Wold-style-definition] 64 | err_log(msg) | ^~~~~~~ ./lib/pwm_searchPFF.c: In function 'save_hit': ./lib/pwm_searchPFF.c:99:1: warning: old-style function definition [-Wold-style-definition] 99 | save_hit(base,strand,score,hits,pnhit) | ^~~~~~~~ ./lib/pwm_searchPFF.c: In function 'get_cmd_args': ./lib/pwm_searchPFF.c:222:5: warning: old-style function definition [-Wold-style-definition] 222 | int get_cmd_args(argc,argv,pargs) | ^~~~~~~~~~~~ ./lib/pwm_searchPFF.c: In function 'get_sequence': ./lib/pwm_searchPFF.c:303:5: warning: old-style function definition [-Wold-style-definition] 303 | int get_sequence(fp,seq_id,sequence) | ^~~~~~~~~~~~ ./lib/pwm_searchPFF.c: In function 'best_pull': ./lib/pwm_searchPFF.c:414:5: warning: old-style function definition [-Wold-style-definition] 414 | int best_pull(pargs,pbase,pstrand,pscore) | ^~~~~~~~~ ./lib/pwm_searchPFF.c: In function 'mark': ./lib/pwm_searchPFF.c:460:1: warning: old-style function definition [-Wold-style-definition] 460 | mark(width) | ^~~~ ./lib/pwm_searchPFF.c: In function 'output': ./lib/pwm_searchPFF.c:478:1: warning: old-style function definition [-Wold-style-definition] 478 | output(pargs,seqid,base,seq,strand,score, outfp) | ^~~~~~ ./lib/pwm_searchPFF.c: In function 'do_seq': ./lib/pwm_searchPFF.c:539:1: warning: old-style function definition [-Wold-style-definition] 539 | do_seq(pargs,pwm,seqid,seq,outfp) | ^~~~~~ ./lib/pwm_searchPFF.c: In function 'loop_on_seqs': ./lib/pwm_searchPFF.c:674:1: warning: old-style function definition [-Wold-style-definition] 674 | loop_on_seqs(pargs,pwm,fp, outfp) | ^~~~~~~~~~~~ rm -f ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong pwmsearch.o -o ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so \ -lm \ chmod 755 ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' Manifying 35 pod documents make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' prove --blib t/01_Matrix.t t/02_Search.t t/03_DB_FlatFileDir.t t/05_DB_JASPAR.t t/06_SimplePFM.t t/07_AnnSpec.t t/07_Elph.t t/07_Gibbs.t t/07_MEME.t t/08_DB_LocalTRANSFAC.t t/09_Word_Consensus.t t/10_Tools_SetOperations.t Ext/t/*.t Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/01_Matrix.t ............... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/02_Search.t ............... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/03_DB_FlatFileDir.t ....... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/05_DB_JASPAR.t ............ ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/06_SimplePFM.t ............ ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_AnnSpec.t .............. ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_Elph.t ................. ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_Gibbs.t ................ ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_MEME.t ................. ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/08_DB_LocalTRANSFAC.t ..... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/09_Word_Consensus.t ....... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/10_Tools_SetOperations.t .. ok Ext/t/pwmsearch.t ........... ok All tests successful. Files=13, Tests=45, 3 wallclock secs ( 0.05 usr 0.03 sys + 2.51 cusr 0.36 csys = 2.95 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libtfbs-perl/ make -j42 install DESTDIR=/build/reproducible-path/libtfbs-perl-0.7.1\+ds/debian/libtfbs-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' make[2]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644 Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' Manifying 35 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/TFBS/Ext/pwmsearch/pwmsearch.so Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/TFBS/Ext/pwmsearch/pwmsearch.bundle Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/pwm_searchPFF.c Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/pwm_search.h Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/ConservationProfile.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/Word.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGenI.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternI.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/DB.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/TFFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/Matrix.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/Site.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/SitePairSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/README.md Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/_Iterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/SiteSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/SitePair.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/MatrixSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/Tools/SetOperations.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/Word/Consensus.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR4.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/DB/FlatFileDir.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR5.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR7.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/DB/LocalTRANSFAC.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR6.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR2.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/DB/TRANSFAC.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/Run/ConservationProfileGenerator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/_Iterator/_SiteSetIterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/_Iterator/_MatrixSetIterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/Ext/pwmsearch.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen/SimplePFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen/Gibbs.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen/MEME.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen/AnnSpec.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen/Elph.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen/YMF.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen/YMF/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen/AnnSpec/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen/Elph/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen/Gibbs/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen/MEME/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen/Motif/Word.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/PatternGen/Motif/Matrix.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/Matrix/Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/Matrix/_Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/Matrix/PWM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/Matrix/PFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/TFBS/Matrix/ICM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternI.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR7.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR5.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PWM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::MatrixSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::SimplePFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Ext::pwmsearch.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::ICM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Site.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePairSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word::Consensus.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePair.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::Alignment.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::LocalTRANSFAC.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::TRANSFAC.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR2.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SiteSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR4.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR6.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::TFFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::FlatFileDir.3pm make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installexamples mkdir -p debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext cp -a Ext/t debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installman dh_lintian dh_perl dh_pdl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_fixperms find debian -name pwmsearch.bundle -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libtfbs-perl' in '../libtfbs-perl_0.7.1+ds-5_amd64.deb'. dpkg-deb: building package 'libtfbs-perl-dbgsym' in '../libtfbs-perl-dbgsym_0.7.1+ds-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libtfbs-perl_0.7.1+ds-5_amd64.buildinfo dpkg-genchanges --build=binary -O../libtfbs-perl_0.7.1+ds-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4073987 and its subdirectories I: Current time: Fri Oct 16 23:54:09 -12 2026 I: pbuilder-time-stamp: 1792238049 Sun Sep 14 05:31:11 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Sun Sep 14 05:31:11 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Sun Sep 14 05:33:38 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Sun Sep 14 05:33:39 UTC 2025 I: libtfbs-perl_0.7.1+ds-5_amd64.changes: Format: 1.8 Date: Thu, 11 Sep 2025 22:40:14 +0200 Source: libtfbs-perl Binary: libtfbs-perl libtfbs-perl-dbgsym Architecture: amd64 Version: 0.7.1+ds-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libtfbs-perl - scanning DNA sequence with a position weight matrix Closes: 1097278 1102835 Changes: libtfbs-perl (0.7.1+ds-5) unstable; urgency=medium . * Team upload. * gcc-15.patch: new: fix ftbfs with gcc-15. (Closes: #1097278) * d/control: approach cross-buildability. This change introduces perl-xs-dev and libcrypt-dev to build dependencies, the latter being needed soon once out of the essential set. In addition, some filtering is implemented and the perl interpreter is requested for the native architecture. Thanks to Helmut Grohne (Closes: #1102835) * d/control: declare compliance to standards version 4.7.2. * d/watch: move to format version 5. * d/salsa-ci.yml: new: configure CI. Checksums-Sha1: b25e2e29cb6e3e27b0305d7ba6127cd18ba04c9b 35072 libtfbs-perl-dbgsym_0.7.1+ds-5_amd64.deb de1bc05f0718e9fa6d9059523a3059385f5c2caf 6506 libtfbs-perl_0.7.1+ds-5_amd64.buildinfo 2a8cbfb63df7cd26aa6ca5d9efb6aef8ea7f7ba9 224412 libtfbs-perl_0.7.1+ds-5_amd64.deb Checksums-Sha256: e65a719ef229a1c48b77999a259156b70daca754e7f5167ed3911f6faa8d3157 35072 libtfbs-perl-dbgsym_0.7.1+ds-5_amd64.deb dc752cdbc807fdfbbc8a82c5f6ec558f590ce6b793232bdd1994610e68d16b51 6506 libtfbs-perl_0.7.1+ds-5_amd64.buildinfo 1f65105793f66bb3dfb6e336ce3d0e41a1b0ee46f776b4006af46ee47c51845a 224412 libtfbs-perl_0.7.1+ds-5_amd64.deb Files: 3b10a6da25036d915c8c4c1753fc8747 35072 debug optional libtfbs-perl-dbgsym_0.7.1+ds-5_amd64.deb 049d54acb2c6258fa7af0fee5ea994b6 6506 perl optional libtfbs-perl_0.7.1+ds-5_amd64.buildinfo 81cde2058eb5717d3567fccb5c4ea1a9 224412 perl optional libtfbs-perl_0.7.1+ds-5_amd64.deb Sun Sep 14 05:33:39 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_10-53386.service; invocation ID: 67e2cca8c8d74f2cae670abf23478848 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NFpNGQwN/libtfbs-perl_0.7.1+ds-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NFpNGQwN/libtfbs-perl_0.7.1+ds-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NFpNGQwN/libtfbs-perl_0.7.1+ds-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NFpNGQwN/b1/libtfbs-perl_0.7.1+ds-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.NFpNGQwN/b2/libtfbs-perl_0.7.1+ds-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 208ms CPU time consumed: 171ms Memory peak: 17.8M (swap: 0B) Sun Sep 14 05:33:40 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sun Sep 14 05:33:40 UTC 2025 I: libtfbs-perl from forky built successfully and reproducibly on amd64. Sun Sep 14 05:33:41 UTC 2025 I: Removing signed libtfbs-perl_0.7.1+ds-5_amd64.buildinfo.asc files: removed './b1/libtfbs-perl_0.7.1+ds-5_amd64.buildinfo.asc' removed './b2/libtfbs-perl_0.7.1+ds-5_amd64.buildinfo.asc'