Sat Sep 6 12:44:30 UTC 2025 I: starting to build macromoleculebuilder/forky/amd64 on jenkins on '2025-09-06 12:44' Sat Sep 6 12:44:30 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_30/57873/console.log Sat Sep 6 12:44:30 UTC 2025 I: Downloading source for forky/macromoleculebuilder=4.0.0+dfsg-5 --2025-09-06 12:44:30-- http://deb.debian.org/debian/pool/main/m/macromoleculebuilder/macromoleculebuilder_4.0.0%2bdfsg-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2491 (2.4K) [text/prs.lines.tag] Saving to: ‘macromoleculebuilder_4.0.0+dfsg-5.dsc’ 0K .. 100% 299M=0s 2025-09-06 12:44:30 (299 MB/s) - ‘macromoleculebuilder_4.0.0+dfsg-5.dsc’ saved [2491/2491] Sat Sep 6 12:44:30 UTC 2025 I: macromoleculebuilder_4.0.0+dfsg-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macromoleculebuilder Binary: libmmb-dev, libmmb4.0t64, mmb, mmb-common Architecture: any all Version: 4.0.0+dfsg-5 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://simtk.org/projects/rnatoolbox Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/macromoleculebuilder Vcs-Git: https://salsa.debian.org/debichem-team/macromoleculebuilder.git Build-Depends: architecture-is-64-bit, asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, dpkg-dev (>= 1.22.5), gemmi-dev (>= 0.6.2+ds-2), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev Package-List: libmmb-dev deb libdevel optional arch=any libmmb4.0t64 deb libs optional arch=any mmb deb science optional arch=any mmb-common deb science optional arch=all Checksums-Sha1: c37eccceb961f3e78d5b7145faf79ce425cf104e 2567256 macromoleculebuilder_4.0.0+dfsg.orig.tar.xz 92ca5482b680f90676592a9fd69ec77274b4269d 5964 macromoleculebuilder_4.0.0+dfsg-5.debian.tar.xz Checksums-Sha256: 2f50d11c886c36fd18476f942d7521536ded599584e0d83462a63ba5f9ccc449 2567256 macromoleculebuilder_4.0.0+dfsg.orig.tar.xz 139eb1301e44a6b967bb990e97300618befc1784e04c2b62bf399c8b835f4afd 5964 macromoleculebuilder_4.0.0+dfsg-5.debian.tar.xz Files: 951370d06adf03fb858edccdee43c075 2567256 macromoleculebuilder_4.0.0+dfsg.orig.tar.xz 69bbd609e8a36fbef46bcfbf9328d2c5 5964 macromoleculebuilder_4.0.0+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmdGxgISHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKH0woP/1yiqADLTU62XcgcSm0k7L/n3cc/ibvP GPwPTAxEtHTmsJhhB23jp5oIG39yIngqgQKNpQ3ghc3kt/oSIOFkVftK7+R7GDmN /nJsECNL1frW2ybKwid9kRy14shL2Fbfrlms5GM1ixfVFi339xS5WMNs5FOBR8/e W2qKUR0i6Tegl8vvhQ9l2XpksN8CFiF0SdkiuwjNKZstfDQ+oNb9EeGKbJMu1mnS G5F5gLkOs8B2AB5WCpfFhwwjEibOLzXDbEl7QemqcYvaWEuV2H6UXP9j2uckcxmk /miIWmIXQ1sqAzvCVgP3nRs9XSz2t87btOBhHx5S7UqWn+3CPsIFXD9KcM/Ddv3R Lj8NTLfyusNgG1ll6b63wSWh6KIPwxuJ6s95HgsJcrwRkld0Fbx5qe9puz0TtQXG HVQ+18ZP2jDCDEnIR4+AOF69/6ZnL5X3AsZ5KuPpHGXtHOl9PZKyh4+JNlY6iTVk 5HGc3ZvJfE3j5HnFDsVaoXwWwAd7tY+8yxpPCjvuepKEWWmJv/fiUyZNUcnKnaw8 /J+YHDZOhyUUeGXG4kC01qvNclX4C/f7WrD+687NOc8EeQqr83grfXSK6Dro7s7Y 6Af+9M/2IXi9jNx34L2My4PtGsDTMo+ngkeG8LtzZSD0DHMML3nWd2+8183l7heH RZbLpKGrsI2K =nsD7 -----END PGP SIGNATURE----- Sat Sep 6 12:44:30 UTC 2025 I: Checking whether the package is not for us Sat Sep 6 12:44:30 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sat Sep 6 12:44:30 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sat Sep 6 12:47:26 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 9 07:07:31 -12 2026 I: pbuilder-time-stamp: 1791572851 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [macromoleculebuilder_4.0.0+dfsg-5.dsc] I: copying [./macromoleculebuilder_4.0.0+dfsg.orig.tar.xz] I: copying [./macromoleculebuilder_4.0.0+dfsg-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./macromoleculebuilder_4.0.0+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting macromoleculebuilder in macromoleculebuilder-4.0.0+dfsg dpkg-source: info: unpacking macromoleculebuilder_4.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking macromoleculebuilder_4.0.0+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying drop-CMAKE_CXX_STANDARD.patch dpkg-source: info: applying 96da444290ab1af4385013c566079d381d8051b4.patch dpkg-source: info: applying bf1ab1ebf49bb9e48f4f133e155f9315cc37079d.patch dpkg-source: info: applying 27.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1717337/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='43d559f74aac42ca83a3360f2424e57b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1717337' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SQPdqDxl/pbuilderrc_jJyE --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SQPdqDxl/b1 --logfile b1/build.log macromoleculebuilder_4.0.0+dfsg-5.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1717337/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: architecture-is-64-bit, asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, dpkg-dev (>= 1.22.5), gemmi-dev (>= 0.6.2+ds-2), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on asciidoc-base; however: Package asciidoc-base is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on docbook-xml; however: Package docbook-xml is not installed. pbuilder-satisfydepends-dummy depends on gemmi-dev (>= 0.6.2+ds-2); however: Package gemmi-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenmm-dev; however: Package libopenmm-dev is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimbody-dev; however: Package libsimbody-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimtkmolmodel-dev (>= 3.1.0); however: Package libsimtkmolmodel-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimtkmolmodel-plugins; however: Package libsimtkmolmodel-plugins is not installed. pbuilder-satisfydepends-dummy depends on libstb-dev; however: Package libstb-dev is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} asciidoc-base{a} asciidoc-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docbook-xml{a} docbook-xsl{a} dwz{a} file{a} freeglut3-dev{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libblas-dev{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm2{a} libedit2{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgcrypt20{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglut-dev{a} libglut3.12{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgnutls30t64{a} libgpg-error0{a} libgssapi-krb5-2{a} libice-dev{a} libice6{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libopengl-dev{a} libopengl0{a} libopenmm-dev{a} libopenmm8.1{a} libp11-kit0{a} libpciaccess0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsimbody-dev{a} libsimbody3.7{a} libsimtkmolmodel-dev{a} libsimtkmolmodel-plugins{a} libsimtkmolmodel3.1t64{a} libsm-dev{a} libsm6{a} libssh2-1t64{a} libstb-dev{a} libstb0t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libvulkan1{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2-16{a} libxml2-utils{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxshmfence1{a} libxslt1.1{a} libxt-dev{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sgml-data{a} tao-pegtl-dev{a} tzdata{a} uuid-dev{a} x11-common{a} x11proto-dev{a} xml-core{a} xorg-sgml-doctools{a} xsltproc{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpg-error-l10n libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix wget xmlto 0 packages upgraded, 169 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After unpacking 489 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-2 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-2 [180 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 architecture-properties amd64 0.2.6 [2336 B] Get: 28 http://deb.debian.org/debian forky/main amd64 asciidoc-common all 10.2.1-1 [104 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 xml-core all 0.19 [20.1 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 docbook-xsl all 1.79.2+dfsg-7 [1221 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libxml2-utils amd64 2.14.5+dfsg-0.2 [123 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libxslt1.1 amd64 1.1.43-0.2 [155 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 xsltproc amd64 1.1.43-0.2 [43.6 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 asciidoc-base all 10.2.1-1 [84.9 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 51 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.15.0-1 [392 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 71 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.14.2-1 [19.8 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.14.2-1 [8768 B] Get: 77 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 sgml-data all 2.0.11+nmu1 [179 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 docbook-xml all 4.5-13 [77.4 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libdrm-common all 2.4.125-2 [8576 B] Get: 92 http://deb.debian.org/debian forky/main amd64 libdrm2 amd64 2.4.125-2 [39.1 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libx11-xcb1 amd64 2:1.8.12-1 [247 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b4 [19.3 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libdrm-amdgpu1 amd64 2.4.125-2 [23.2 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libdrm-intel1 amd64 2.4.125-2 [64.1 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 libllvm19 amd64 1:19.1.7-3+b2 [26.0 MB] Get: 107 http://deb.debian.org/debian forky/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libsensors5 amd64 1:3.6.2-2 [37.5 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libxshmfence1 amd64 1.3.3-1 [10.9 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 mesa-libgallium amd64 25.0.7-2 [9629 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 libwayland-server0 amd64 1.24.0-2+b1 [35.5 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libgbm1 amd64 25.0.7-2 [44.4 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 libvulkan1 amd64 1.4.321.0-1 [133 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 libgl1-mesa-dri amd64 25.0.7-2 [46.1 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 libglx-mesa0 amd64 25.0.7-2 [143 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get: 120 http://deb.debian.org/debian forky/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 libglut3.12 amd64 3.4.0-4 [139 kB] Get: 122 http://deb.debian.org/debian forky/main amd64 libopengl0 amd64 1.7.0-1+b2 [30.9 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 libglu1-mesa amd64 9.0.2-1.1+b3 [184 kB] Get: 124 http://deb.debian.org/debian forky/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 125 http://deb.debian.org/debian forky/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libglx-dev amd64 1.7.0-1+b2 [15.8 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libgl-dev amd64 1.7.0-1+b2 [101 kB] Get: 133 http://deb.debian.org/debian forky/main amd64 libopengl-dev amd64 1.7.0-1+b2 [5388 B] Get: 134 http://deb.debian.org/debian forky/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1+b3 [223 kB] Get: 135 http://deb.debian.org/debian forky/main amd64 libxext-dev amd64 2:1.3.4-1+b3 [104 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+25 [217 kB] Get: 137 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB] Get: 140 http://deb.debian.org/debian forky/main amd64 libice-dev amd64 2:1.1.1-1 [73.8 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 uuid-dev amd64 2.41.1-1 [49.0 kB] Get: 142 http://deb.debian.org/debian forky/main amd64 libsm-dev amd64 2:1.2.6-1 [39.7 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 libxt-dev amd64 1:1.2.1-1.2+b2 [407 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 libglut-dev amd64 3.4.0-4 [163 kB] Get: 145 http://deb.debian.org/debian forky/main amd64 freeglut3-dev amd64 3.4.0-4 [53.4 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Get: 147 http://deb.debian.org/debian forky/main amd64 gemmi-dev amd64 0.7.1+ds-1 [1186 kB] Get: 148 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get: 149 http://deb.debian.org/debian forky/main amd64 libblas-dev amd64 3.12.1-6 [170 kB] Get: 150 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-2 [893 kB] Get: 151 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-6 [2447 kB] Get: 152 http://deb.debian.org/debian forky/main amd64 liblapack-dev amd64 3.12.1-6 [4991 kB] Get: 153 http://deb.debian.org/debian forky/main amd64 libopenmm8.1 amd64 8.1.2+dfsg-11 [1059 kB] Get: 154 http://deb.debian.org/debian forky/main amd64 libopenmm-dev amd64 8.1.2+dfsg-11 [346 kB] Get: 155 http://deb.debian.org/debian forky/main amd64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB] Get: 156 http://deb.debian.org/debian forky/main amd64 libxfixes3 amd64 1:6.0.0-2+b4 [20.2 kB] Get: 157 http://deb.debian.org/debian forky/main amd64 libxfixes-dev amd64 1:6.0.0-2+b4 [22.4 kB] Get: 158 http://deb.debian.org/debian forky/main amd64 libxi-dev amd64 2:1.8.2-1 [241 kB] Get: 159 http://deb.debian.org/debian forky/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get: 160 http://deb.debian.org/debian forky/main amd64 libxmu-headers all 2:1.1.3-3 [68.5 kB] Get: 161 http://deb.debian.org/debian forky/main amd64 libxmu-dev amd64 2:1.1.3-3+b4 [65.3 kB] Get: 162 http://deb.debian.org/debian forky/main amd64 libsimbody3.7 amd64 3.7+dfsg-4 [3363 kB] Get: 163 http://deb.debian.org/debian forky/main amd64 libsimbody-dev amd64 3.7+dfsg-4 [2726 kB] Get: 164 http://deb.debian.org/debian forky/main amd64 libsimtkmolmodel3.1t64 amd64 3.1.0-4.1+b3 [667 kB] Get: 165 http://deb.debian.org/debian forky/main amd64 libsimtkmolmodel-dev amd64 3.1.0-4.1+b3 [1864 kB] Get: 166 http://deb.debian.org/debian forky/main amd64 libsimtkmolmodel-plugins amd64 3.1.0-4.1+b3 [19.6 kB] Get: 167 http://deb.debian.org/debian forky/main amd64 libstb0t64 amd64 0.0~git20241109.5c20573+ds-1 [220 kB] Get: 168 http://deb.debian.org/debian forky/main amd64 libstb-dev amd64 0.0~git20241109.5c20573+ds-1 [655 kB] Get: 169 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 116 MB in 6s (18.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20231 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_amd64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-2_all.deb ... Unpacking readline-common (8.3-2) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-2_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-2) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21246 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-2+b1_amd64.deb ... 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Unpacking libxfixes-dev:amd64 (1:6.0.0-2+b4) ... Selecting previously unselected package libxi-dev:amd64. Preparing to unpack .../144-libxi-dev_2%3a1.8.2-1_amd64.deb ... Unpacking libxi-dev:amd64 (2:1.8.2-1) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../145-libxmu6_2%3a1.1.3-3+b4_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.3-3+b4) ... Selecting previously unselected package libxmu-headers. Preparing to unpack .../146-libxmu-headers_2%3a1.1.3-3_all.deb ... Unpacking libxmu-headers (2:1.1.3-3) ... Selecting previously unselected package libxmu-dev:amd64. Preparing to unpack .../147-libxmu-dev_2%3a1.1.3-3+b4_amd64.deb ... Unpacking libxmu-dev:amd64 (2:1.1.3-3+b4) ... Selecting previously unselected package libsimbody3.7:amd64. Preparing to unpack .../148-libsimbody3.7_3.7+dfsg-4_amd64.deb ... Unpacking libsimbody3.7:amd64 (3.7+dfsg-4) ... Selecting previously unselected package libsimbody-dev:amd64. Preparing to unpack .../149-libsimbody-dev_3.7+dfsg-4_amd64.deb ... Unpacking libsimbody-dev:amd64 (3.7+dfsg-4) ... Selecting previously unselected package libsimtkmolmodel3.1t64:amd64. Preparing to unpack .../150-libsimtkmolmodel3.1t64_3.1.0-4.1+b3_amd64.deb ... Unpacking libsimtkmolmodel3.1t64:amd64 (3.1.0-4.1+b3) ... Selecting previously unselected package libsimtkmolmodel-dev:amd64. Preparing to unpack .../151-libsimtkmolmodel-dev_3.1.0-4.1+b3_amd64.deb ... Unpacking libsimtkmolmodel-dev:amd64 (3.1.0-4.1+b3) ... Selecting previously unselected package libsimtkmolmodel-plugins. Preparing to unpack .../152-libsimtkmolmodel-plugins_3.1.0-4.1+b3_amd64.deb ... Unpacking libsimtkmolmodel-plugins (3.1.0-4.1+b3) ... Selecting previously unselected package libstb0t64:amd64. Preparing to unpack .../153-libstb0t64_0.0~git20241109.5c20573+ds-1_amd64.deb ... Unpacking libstb0t64:amd64 (0.0~git20241109.5c20573+ds-1) ... Selecting previously unselected package libstb-dev:amd64. Preparing to unpack .../154-libstb-dev_0.0~git20241109.5c20573+ds-1_amd64.deb ... Unpacking libstb-dev:amd64 (0.0~git20241109.5c20573+ds-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../155-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libpciaccess0:amd64 (0.17-3+b3) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libxcb-xfixes0:amd64 (1.17.0-2+b1) ... Setting up bsdextrautils (2.41.1-1) ... Setting up libgpg-error0:amd64 (1.55-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up architecture-properties:amd64 (0.2.6) ... Setting up libglvnd0:amd64 (1.7.0-1+b2) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libxcb-glx0:amd64 (1.17.0-2+b1) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libedit2:amd64 (3.1-20250104-1) ... Setting up libuv1t64:amd64 (1.51.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up x11-common (1:7.7+25) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.2-2) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libgcrypt20:amd64 (1.11.2-2) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libopengl0:amd64 (1.7.0-1+b2) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libseqan2-dev (2.4.0+dfsg-16) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 9 19:09:53 UTC 2026. Universal Time is now: Fri Oct 9 19:09:53 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20240727.1) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libblas3:amd64 (3.12.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libx11-data (2:1.8.12-1) ... Setting up libxcb-sync1:amd64 (1.17.0-2+b1) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up uuid-dev:amd64 (2.41.1-1) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libsensors5:amd64 (1:3.6.2-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libgfortran5:amd64 (15.2.0-2) ... Setting up libvulkan1:amd64 (1.4.321.0-1) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.26) ... Setting up libxshmfence1:amd64 (1.3.3-1) ... Setting up libxcb-randr0:amd64 (1.17.0-2+b1) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libxslt1.1:amd64 (1.1.43-0.2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up cmake-data (3.31.6-2) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libglu1-mesa:amd64 (9.0.2-1.1+b3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libopengl-dev:amd64 (1.7.0-1+b2) ... Setting up libstb0t64:amd64 (0.0~git20241109.5c20573+ds-1) ... Setting up libopenmm8.1 (8.1.2+dfsg-11) ... Setting up libdrm-common (2.4.125-2) ... Setting up libarchive13t64:amd64 (3.7.4-4+b1) ... Setting up readline-common (8.3-2) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libblas-dev:amd64 (3.12.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up tao-pegtl-dev (3.2.7-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.2-1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Setting up libllvm19:amd64 (1:19.1.7-3+b2) ... Setting up libwayland-server0:amd64 (1.24.0-2+b1) ... Setting up libx11-xcb1:amd64 (2:1.8.12-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up libice-dev:amd64 (2:1.1.1-1) ... Setting up libtool (2.5.4-5) ... Setting up gemmi-dev (0.7.1+ds-1) ... Setting up xsltproc (1.1.43-0.2) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libopenmm-dev (8.1.2+dfsg-11) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b4) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up liblapack-dev:amd64 (3.12.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libreadline8t64:amd64 (8.3-2) ... Setting up dh-strip-nondeterminism (1.14.2-1) ... Setting up libdrm2:amd64 (2.4.125-2) ... Setting up libstb-dev:amd64 (0.0~git20241109.5c20573+ds-1) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libxml2-utils (2.14.5+dfsg-0.2) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.125-2) ... Setting up libgnutls30t64:amd64 (3.8.9-3) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libxi6:amd64 (2:1.8.2-1) ... Setting up python3.13 (3.13.7-1) ... Setting up libsm-dev:amd64 (2:1.2.6-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libdrm-intel1:amd64 (2.4.125-2) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libx11-dev:amd64 (2:1.8.12-1) ... Setting up python3 (3.13.5-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxfixes-dev:amd64 (1:6.0.0-2+b4) ... Setting up asciidoc-common (10.2.1-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ... Setting up libxext-dev:amd64 (2:1.3.4-1+b3) ... Setting up libxi-dev:amd64 (2:1.8.2-1) ... Setting up mesa-libgallium:amd64 (25.0.7-2) ... Setting up libxmu-headers (2:1.1.3-3) ... Setting up libxmu6:amd64 (2:1.1.3-3+b4) ... Setting up libcurl4t64:amd64 (8.15.0-1) ... Setting up libgbm1:amd64 (25.0.7-2) ... Setting up libgl1-mesa-dri:amd64 (25.0.7-2) ... Setting up debhelper (13.26) ... Setting up libxt-dev:amd64 (1:1.2.1-1.2+b2) ... Setting up cmake (3.31.6-2) ... Setting up libglx-mesa0:amd64 (25.0.7-2) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up libxmu-dev:amd64 (2:1.1.3-3+b4) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up libglut3.12:amd64 (3.4.0-4) ... Setting up libsimbody3.7:amd64 (3.7+dfsg-4) ... Setting up libglx-dev:amd64 (1.7.0-1+b2) ... Setting up libgl-dev:amd64 (1.7.0-1+b2) ... Setting up libsimtkmolmodel3.1t64:amd64 (3.1.0-4.1+b3) ... Setting up libglu1-mesa-dev:amd64 (9.0.2-1.1+b3) ... Setting up libglut-dev:amd64 (3.4.0-4) ... Setting up libsimtkmolmodel-plugins (3.1.0-4.1+b3) ... Setting up libsimtkmolmodel-dev:amd64 (3.1.0-4.1+b3) ... Setting up freeglut3-dev:amd64 (3.4.0-4) ... Setting up libsimbody-dev:amd64 (3.7+dfsg-4) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docbook-xsl (1.79.2+dfsg-7) ... Setting up sgml-data (2.0.11+nmu1) ... Setting up asciidoc-base (10.2.1-1) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docbook-xml (4.5-13) ... Processing triggers for sgml-base (1.31+nmu1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/macromoleculebuilder-4.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../macromoleculebuilder_4.0.0+dfsg-5_source.changes dpkg-buildpackage: info: source package macromoleculebuilder dpkg-buildpackage: info: source version 4.0.0+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/macromoleculebuilder-4.0.0+dfsg' dh_auto_configure -- \ -DCMAKE_BUILD_TYPE=Release \ -DENABLE_LEPTON=OFF \ -DGEMMI_DIR=/usr \ -DOpenMM_INCLUDE_DIR=/usr/include \ -DSimTKmolmodel=/usr \ -DCMAKE_CXX_FLAGS="-D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/reproducible-path/macromoleculebuilder-4.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O0" cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release -DENABLE_LEPTON=OFF -DGEMMI_DIR=/usr -DOpenMM_INCLUDE_DIR=/usr/include -DSimTKmolmodel=/usr "-DCMAKE_CXX_FLAGS=-D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/reproducible-path/macromoleculebuilder-4.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O0" .. -- The CXX compiler identification is GNU 14.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMM: /usr/include -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") CMake Error at CMakeLists.txt:17 (message): Gemmi version 0.7.1 is not compatible with MMB. Major version must be exactly 0.6 and minor version .2 or newer. Call Stack (most recent call first): CMakeLists.txt:95 (CHECK_GEMMI_VERSION) -- Configuring incomplete, errors occurred! cd obj-x86_64-linux-gnu && tail -v -n \+0 CMakeCache.txt ==> CMakeCache.txt <== # This is the CMakeCache file. # For build in directory: /build/reproducible-path/macromoleculebuilder-4.0.0+dfsg/obj-x86_64-linux-gnu # It was generated by CMake: /usr/bin/cmake # You can edit this file to change values found and used by cmake. # If you do not want to change any of the values, simply exit the editor. # If you do want to change a value, simply edit, save, and exit the editor. # The syntax for the file is as follows: # KEY:TYPE=VALUE # KEY is the name of a variable in the cache. # TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!. # VALUE is the current value for the KEY. ######################## # EXTERNAL cache entries ######################## //OFF ASSUME_VERSIONED_SIMBODY:BOOL=OFF //Build Python wrapper around libMMB API BUILD_PYTHON_WRAPPER:BOOL=OFF //Build shared binaries BUILD_SHARED:BOOL=ON //Build static binaries BUILD_STATIC:BOOL=OFF //Path to a program. CMAKE_ADDR2LINE:FILEPATH=/usr/bin/addr2line //Path to a program. CMAKE_AR:FILEPATH=/usr/bin/ar //Choose the type of build, options are: None Debug Release RelWithDebInfo // MinSizeRel ... CMAKE_BUILD_TYPE:STRING=Release //Enable/Disable color output during build. CMAKE_COLOR_MAKEFILE:BOOL=ON //CXX compiler CMAKE_CXX_COMPILER:FILEPATH=/usr/bin/c++ //A wrapper around 'ar' adding the appropriate '--plugin' option // for the GCC compiler CMAKE_CXX_COMPILER_AR:FILEPATH=/usr/bin/gcc-ar-14 //A wrapper around 'ranlib' adding the appropriate '--plugin' option // for the GCC compiler CMAKE_CXX_COMPILER_RANLIB:FILEPATH=/usr/bin/gcc-ranlib-14 //Flags used by the CXX compiler during all build types. CMAKE_CXX_FLAGS:STRING=-D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/build/reproducible-path/macromoleculebuilder-4.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O0 //Flags used by the CXX compiler during DEBUG builds. 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