Wed Oct 22 09:59:56 UTC 2025 I: starting to build nim-hts/forky/amd64 on jenkins on '2025-10-22 09:59' Wed Oct 22 09:59:56 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_23/75993/console.log Wed Oct 22 09:59:56 UTC 2025 I: Downloading source for forky/nim-hts=0.3.25+ds-3 --2025-10-22 09:59:56-- http://deb.debian.org/debian/pool/main/n/nim-hts/nim-hts_0.3.25%2bds-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1586 (1.5K) [text/prs.lines.tag] Saving to: ‘nim-hts_0.3.25+ds-3.dsc’ 0K . 100% 197M=0s 2025-10-22 09:59:56 (197 MB/s) - ‘nim-hts_0.3.25+ds-3.dsc’ saved [1586/1586] Wed Oct 22 09:59:56 UTC 2025 I: nim-hts_0.3.25+ds-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: nim-hts Binary: nim-hts-dev, nim-hts-examples Architecture: all Version: 0.3.25+ds-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Debian Nim Team Homepage: https://github.com/brentp/hts-nim Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/nim-hts Vcs-Git: https://salsa.debian.org/med-team/nim-hts.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, libhts-dev Build-Depends: debhelper-compat (= 13), nim, libhts-dev, samtools, tabix, bcftools Package-List: nim-hts-dev deb libs optional arch=all nim-hts-examples deb libs optional arch=all Checksums-Sha1: d9eaec99c030759b9cbe77c14520a880a2d1ae93 527888 nim-hts_0.3.25+ds.orig.tar.xz 43a893912b7ff0d886f8d30a2933619eeca10374 342864 nim-hts_0.3.25+ds-3.debian.tar.xz Checksums-Sha256: b588277375a83d45fc96a3c08be69da0783a805ecaf0945083e8390936ee0f63 527888 nim-hts_0.3.25+ds.orig.tar.xz ee3f4731e4409b178355f0c4e7c30c40df1ae24b89259f57407ff652f4a2c928 342864 nim-hts_0.3.25+ds-3.debian.tar.xz Files: 5a5ff42d622f2c3e997812fce01d6030 527888 nim-hts_0.3.25+ds.orig.tar.xz 3ac80ddf80b440b85290d937b4df93c4 342864 nim-hts_0.3.25+ds-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iIgEARYKADAWIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCaNWrvBIcbmlsZXNoQGRl Ymlhbi5vcmcACgkQKieQS9ckPtro4AD/YPvMYTF7Jb0+8Ym1BkJG5W0tUcnrv4ot p71u+zI6y9cA+wd/GyLQndf/9NvKlzytfycCOY4vjp9S0DfPj23VxK4E =VYpR -----END PGP SIGNATURE----- Wed Oct 22 09:59:56 UTC 2025 I: Checking whether the package is not for us Wed Oct 22 09:59:56 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Wed Oct 22 09:59:56 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Wed Oct 22 10:13:47 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 21 22:01:45 -12 2025 I: pbuilder-time-stamp: 1761127305 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nim-hts_0.3.25+ds-3.dsc] I: copying [./nim-hts_0.3.25+ds.orig.tar.xz] I: copying [./nim-hts_0.3.25+ds-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./nim-hts_0.3.25+ds-3.dsc: no acceptable signature found dpkg-source: info: extracting nim-hts in nim-hts-0.3.25+ds dpkg-source: info: unpacking nim-hts_0.3.25+ds.orig.tar.xz dpkg-source: info: unpacking nim-hts_0.3.25+ds-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying dontDoNestedTests.patch dpkg-source: info: applying disable-test-with-sourceless-file.patch dpkg-source: info: applying fix-version-comparision.patch dpkg-source: info: applying no-incompatible-pointer-types.patch dpkg-source: info: applying fixup-gc-for-nim.patch dpkg-source: info: applying skip-tests.patch dpkg-source: info: applying fix-fai.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2656030/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='22522aceaad24ff99956c0da2443f9d4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2656030' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8W4uwF7w/pbuilderrc_xmA9 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8W4uwF7w/b1 --logfile b1/build.log nim-hts_0.3.25+ds-3.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2656030/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), nim, libhts-dev, samtools, tabix, bcftools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19898 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on nim; however: Package nim is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} nim{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} samtools{a} sensible-utils{a} tabix{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl git krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-gffutils python3-matplotlib wget 0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 39.4 MB of archives. After unpacking 140 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-1 [95.2 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 29 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.16.0-4 [400 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libhts3t64 amd64 1.22.1+ds2-1 [499 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 bcftools amd64 1.22-1 [829 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 51 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libunbound8 amd64 1.24.0-2 [614 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libgnutls-dane0t64 amd64 3.8.10-2 [458 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libgnutls-openssl27t64 amd64 3.8.10-2 [458 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libp11-kit-dev amd64 0.25.9-2 [220 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 nettle-dev amd64 3.10.2-1 [1322 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libgnutls28-dev amd64 3.8.10-2 [1423 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libnghttp3-dev amd64 1.12.0-1 [95.5 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.16.0-1 [25.2 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 libngtcp2-dev amd64 1.16.0-1 [193 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libssl-dev amd64 3.5.4-1 [2980 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [375 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libcurl4-gnutls-dev amd64 8.16.0-4 [522 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-2 [349 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libhts-dev amd64 1.22.1+ds2-1 [1807 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 nim amd64 2.2.4-1 [6003 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 samtools amd64 1.22.1-1 [697 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 tabix amd64 1.22.1+ds2-1 [542 kB] Fetched 39.4 MB in 5s (7170 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19898 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. 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Setting up libdeflate0:amd64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up autotools-dev (20240727.1) ... Setting up libunbound8:amd64 (1.24.0-2) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Setting up libncurses6:amd64 (6.5+20250216-2) ... Setting up comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libssl-dev:amd64 (3.5.4-1) ... Setting up autopoint (0.23.1-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libnghttp3-dev:amd64 (1.12.0-1) ... Setting up liblzma-dev:amd64 (5.8.1-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up nim (2.2.4-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libdeflate-dev:amd64 (1.23-2) ... Setting up tabix (1.22.1+ds2-1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:amd64 (3.10.2-1) ... Setting up libtool (2.5.4-5) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libngtcp2-dev:amd64 (1.16.0-1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.9-2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-4) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libp11-kit-dev:amd64 (0.25.9-2) ... Setting up libgnutls30t64:amd64 (3.8.10-2) ... Setting up libgnutls-openssl27t64:amd64 (3.8.10-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:amd64 (3.8.10-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up libgnutls28-dev:amd64 (3.8.10-2) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up libcurl3t64-gnutls:amd64 (8.16.0-4) ... Setting up debhelper (13.28) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.16.0-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up bcftools (1.22-1) ... Setting up samtools (1.22.1-1) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libcurl4-gnutls-dev:amd64 (8.16.0-4) ... Setting up libhts-dev:amd64 (1.22.1+ds2-1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/nim-hts-0.3.25+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nim-hts_0.3.25+ds-3_source.changes dpkg-buildpackage: info: source package nim-hts dpkg-buildpackage: info: source version 0.3.25+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.25+ds' dh_auto_clean # remnants from testing rm -f ____t.vcf t.gz ti.txt.gz ti.txt.gz.csi rm -f tests/run tests/HG02002.bam.csi tests/auxtest tests/newsample.vcf tests/outmissing.vcf tests/outv.vcf tests/outz.vcf tests/sample.fa.fai tests/all tests/htstest tests/bgzftest tests/bamtest rm -rf tests/nimcache make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.25+ds' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/nim-hts-dev.substvars debian/nim-hts-examples.substvars debian/files rm -fr -- debian/nim-hts-dev/ debian/tmp/ debian/nim-hts-examples/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.25+ds' dh_auto_build # Regenerate repacked files cat tests/sa.sam | samtools view -Sb - > tests/sa.bam samtools index tests/sa.bam tests/sa.bam.bai cat debian/missing-sources/HG02002.sam | samtools view -Sb - > tests/HG02002.bam samtools index tests/HG02002.bam tests/HG02002.bam.bai tabix tests/test.vcf.gz bcftools index tests/test.bcf make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.25+ds' rm -f debian/nim-hts-dev.debhelper.log debian/nim-hts-examples.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/nim-hts-0.3.25+ds' nim c --nimcache:/build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache --mm:refc -d:useSysAssert -d:useGcAssert --lineDir:on --debuginfo -r tests/all Hint: used config file '/etc/nim/nim.cfg' [Conf] Hint: used config file '/etc/nim/config.nims' [Conf] Hint: used config file '/build/reproducible-path/nim-hts-0.3.25+ds/tests/nim.cfg' [Conf] .......................................................................................................................................... /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/flag.nim(1, 19) Hint: duplicate import of 'hts_concat'; previous import here: /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(1, 18) [DuplicateModuleImport] . /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/cigar.nim(1, 19) Hint: duplicate import of 'hts_concat'; previous import here: /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/flag.nim(1, 19) [DuplicateModuleImport] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/cigar.nim(2, 8) Hint: duplicate import of 'strutils'; previous import here: /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(4, 8) [DuplicateModuleImport] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(262, 52) Warning: implicit conversion to 'cstring' from a non-const location: region; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(373, 28) Warning: implicit conversion to 'cstring' from a non-const location: mode; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(409, 35) Warning: implicit conversion to 'cstring' from a non-const location: spl[0]; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(409, 43) Warning: implicit conversion to 'cstring' from a non-const location: spl[1]; this will become a compile time error in the future [CStringConv] .. /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(3, 6) Hint: duplicate import of 'strformat'; previous import here: /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim(3, 8) [DuplicateModuleImport] .... /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(118, 18) Warning: conversion to enum with holes is unsafe: Status(ret) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(119, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(181, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(190, 16) Warning: conversion to enum with holes is unsafe: Status(bcf_hdr_sync(h.hdr)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(288, 18) Warning: conversion to enum with holes is unsafe: Status(int(bcf_update_format(f.v.vcf.header.hdr, f.v.c, cstring(key), nil, 0, cint(htype)))) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(297, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(309, 22) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(320, 22) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(352, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(359, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(366, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(376, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(391, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(405, 20) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(432, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(436, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(441, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(461, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(467, 16) Warning: conversion to enum with holes is unsafe: Status(int(ret)) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(527, 23) Warning: conversion to enum with holes is unsafe: BCF_TYPE(fmt.type) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(542, 23) Warning: conversion to enum with holes is unsafe: BCF_TYPE(fld.type) [HoleEnumConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(601, 27) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(603, 31) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(645, 30) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(664, 36) Warning: implicit conversion to 'cstring' from a non-const location: `[]`(region) do: 0 .. pred(cidx, 1); this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(700, 32) Warning: implicit conversion to 'cstring' from a non-const location: v.fname; this will become a compile time error in the future [CStringConv] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(837, 13) Warning: Use `newSeqUninit` instead; newSeqUninitialized is deprecated [Deprecated] /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim(931, 12) Warning: Use `newSeqUninit` instead; newSeqUninitialized is deprecated [Deprecated] . /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/fai.nim(39, 24) Warning: See corresponding Defect; IndexError is deprecated [Deprecated] ... /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/csi.nim(17, 51) Warning: implicit conversion to 'cstring' from a non-const location: base_path & ".csi"; this will become a compile time error in the future [CStringConv] ... /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 1) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(4, 3) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(10, 23) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(53, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 1) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(4, 3) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(13, 25) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(71, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 1) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(4, 3) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(13, 25) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(74, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 1) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(4, 3) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(17, 27) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(63, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 1) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(4, 3) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(17, 27) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(66, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 1) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(4, 3) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(17, 27) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(74, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(3, 1) template/generic instantiation of `suite` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(25, 3) template/generic instantiation of `test` from here /build/reproducible-path/nim-hts-0.3.25+ds/tests/auxtest.nim(40, 25) template/generic instantiation of `tag` from here /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam/auxtags.nim(58, 7) Warning: unreachable code after 'return' statement or '{.noReturn.}' proc [UnreachableCode] ..... CC: ../../../../usr/lib/nim/lib/system/exceptions.nim CC: ../../../../usr/lib/nim/lib/system/ctypes.nim CC: ../../../../usr/lib/nim/lib/std/private/digitsutils.nim CC: ../../../../usr/lib/nim/lib/std/assertions.nim CC: ../../../../usr/lib/nim/lib/std/private/dragonbox.nim CC: ../../../../usr/lib/nim/lib/std/formatfloat.nim CC: ../../../../usr/lib/nim/lib/system/dollars.nim CC: ../../../../usr/lib/nim/lib/std/typedthreads.nim CC: ../../../../usr/lib/nim/lib/pure/collections/sharedlist.nim CC: ../../../../usr/lib/nim/lib/std/syncio.nim CC: ../../../../usr/lib/nim/lib/system.nim CC: ../../../../usr/lib/nim/lib/std/exitprocs.nim CC: ../../../../usr/lib/nim/lib/pure/parseutils.nim CC: ../../../../usr/lib/nim/lib/pure/math.nim CC: ../../../../usr/lib/nim/lib/pure/algorithm.nim CC: ../../../../usr/lib/nim/lib/pure/unicode.nim /usr/lib/nim/lib/pure/parseutils.nim: In function '_ZN10parseutils22integerOutOfRangeErrorE': /usr/lib/nim/lib/pure/parseutils.nim:429:186: warning: 'noreturn' function does return 429 | raise newException(ValueError, "Parsed integer outside of valid range") | ^ CC: ../../../../usr/lib/nim/lib/pure/strutils.nim /usr/lib/nim/lib/std/syncio.nim: In function '_ZN6syncio8raiseEIOE6string': /usr/lib/nim/lib/std/syncio.nim:157:159: warning: 'noreturn' function does return 157 | raise newException(IOError, msg) | ^ /usr/lib/nim/lib/system/fatal.nim: In function '_ZN10assertions8sysFatalE8typeDescIN10exceptions15AssertionDefectEE6string': /usr/lib/nim/lib/system/fatal.nim:53:169: warning: 'noreturn' function does return 53 | raise (ref exceptn)(msg: message) | ^ CC: ../../../../usr/lib/nim/lib/pure/streams.nim CC: ../../../../usr/lib/nim/lib/pure/times.nim CC: ../../../../usr/lib/nim/lib/pure/hashes.nim CC: ../../../../usr/lib/nim/lib/pure/collections/sets.nim CC: ../../../../usr/lib/nim/lib/std/oserrors.nim CC: ../../../../usr/lib/nim/lib/std/private/oscommon.nim /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sstrutils.nim.c:157:9: warning: '_GNU_SOURCE' redefined 157 | #define _GNU_SOURCE | ^~~~~~~~~~~ In file included from /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sstrutils.nim.c:151: /usr/lib/nim/lib/nimbase.h:79:11: note: this is the location of the previous definition 79 | # define _GNU_SOURCE 1 | ^~~~~~~~~~~ CC: ../../../../usr/lib/nim/lib/std/private/osfiles.nim CC: ../../../../usr/lib/nim/lib/std/envvars.nim CC: ../../../../usr/lib/nim/lib/std/cmdline.nim CC: ../../../../usr/lib/nim/lib/pure/strformat.nim CC: ../../../../usr/lib/nim/lib/pure/terminal.nim CC: ../../../../usr/lib/nim/lib/pure/unittest.nim CC: ../src/hts/private/hts_concat.nim CC: ../src/hts/bam/flag.nim CC: flagtest.nim CC: ../src/hts/bam.nim CC: cigartest.nim CC: htstest.nim /usr/lib/nim/lib/system/fatal.nim: In function '_ZN6system8sysFatalE8typeDescIN10exceptions11RangeDefectEE6string': /usr/lib/nim/lib/system/fatal.nim:53:165: warning: 'noreturn' function does return 53 | raise (ref exceptn)(msg: message) | ^ /usr/lib/nim/lib/system/fatal.nim: In function '_ZN6system8sysFatalE8typeDescIN10exceptions11IndexDefectEE6string': /usr/lib/nim/lib/system/fatal.nim:53:128: warning: 'noreturn' function does return 53 | raise (ref exceptn)(msg: message) | ^ /usr/lib/nim/lib/system/fatal.nim: In function '_ZN6system8sysFatalE8typeDescIN10exceptions13ReraiseDefectEE6string': /usr/lib/nim/lib/system/fatal.nim:53:167: warning: 'noreturn' function does return 53 | raise (ref exceptn)(msg: message) | ^ /usr/lib/nim/lib/system/fatal.nim: In function '_ZN6system8sysFatalE8typeDescIN10exceptions14OverflowDefectEE6string': /usr/lib/nim/lib/system/fatal.nim:53:131: warning: 'noreturn' function does return 53 | raise (ref exceptn)(msg: message) | ^ CC: ../src/hts/vcf.nim /usr/lib/nim/lib/pure/unittest.nim: In function '_ZN8unittest9testEndedE3refIN8unittest36JUnitOutputFormattercolonObjectType_EEN8unittest10TestResultE': /usr/lib/nim/lib/pure/unittest.nim:366:107: warning: passing argument 2 of '_ZN7streams9writeLineE3refIN7streams9StreamObjEE7varargsI6stringE' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 366 | formatter.stream.writeLine("") | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:420:164: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 420 | N_LIB_PRIVATE N_NIMCALL(void, _ZN7streams9writeLineE3refIN7streams9StreamObjEE7varargsI6stringE)(tyObject_StreamObj__r1XfanY7DoimMbYEDg3nww* s_p0, NimStringDesc** args_p1, NI args_p1Len_0); | ~~~~~~~~~~~~~~~~^~~~~~~ /usr/lib/nim/lib/pure/unittest.nim:396:105: warning: passing argument 2 of '_ZN7streams9writeLineE3refIN7streams9StreamObjEE7varargsI6stringE' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 396 | formatter.stream.writeLine("\t\t") | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:420:164: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 420 | N_LIB_PRIVATE N_NIMCALL(void, _ZN7streams9writeLineE3refIN7streams9StreamObjEE7varargsI6stringE)(tyObject_StreamObj__r1XfanY7DoimMbYEDg3nww* s_p0, NimStringDesc** args_p1, NI args_p1Len_0); | ~~~~~~~~~~~~~~~~^~~~~~~ /usr/lib/nim/lib/pure/unittest.nim: In function '_ZN8unittest10suiteEndedE3refIN8unittest36JUnitOutputFormattercolonObjectType_EE': /usr/lib/nim/lib/pure/unittest.nim:399:105: warning: passing argument 2 of '_ZN7streams9writeLineE3refIN7streams9StreamObjEE7varargsI6stringE' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 399 | formatter.stream.writeLine("\t") | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@m..@s..@s..@s..@susr@slib@snim@slib@spure@sunittest.nim.c:420:164: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 420 | N_LIB_PRIVATE N_NIMCALL(void, _ZN7streams9writeLineE3refIN7streams9StreamObjEE7varargsI6stringE)(tyObject_StreamObj__r1XfanY7DoimMbYEDg3nww* s_p0, NimStringDesc** args_p1, NI args_p1Len_0); | ~~~~~~~~~~~~~~~~^~~~~~~ CC: ../src/hts/fai.nim /usr/lib/nim/lib/system/fatal.nim: In function '_ZN6system8sysFatalE8typeDescIN10exceptions22ObjectAssignmentDefectEE6string': /usr/lib/nim/lib/system/fatal.nim:53:176: warning: 'noreturn' function does return 53 | raise (ref exceptn)(msg: message) | ^ /usr/lib/nim/lib/system/fatal.nim: In function '_ZN6system8sysFatalE8typeDescIN10exceptions15NilAccessDefectEE6string': /usr/lib/nim/lib/system/fatal.nim:53:169: warning: 'noreturn' function does return 53 | raise (ref exceptn)(msg: message) | ^ /usr/lib/nim/lib/system/fatal.nim: In function '_ZN6system8sysFatalE8typeDescIN10exceptions22ObjectConversionDefectEE6string': /usr/lib/nim/lib/system/fatal.nim:53:139: warning: 'noreturn' function does return 53 | raise (ref exceptn)(msg: message) | ^ CC: ../src/hts/bgzf.nim CC: ../src/hts/csi.nim /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim: In function '_ZN3bam10set_fieldsE3refIN3bam19BamcolonObjectType_EE7varargsIN3bam8SamFieldEE': /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim:437:85: warning: passing argument 2 of '_ZN6syncio9writeLineE3ptrIN6syncio5CFileEE7varargsI6stringE' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 437 | stderr.write_line("couldn't set opts") | ^ /usr/lib/nim/lib/std/syncio.nim:618:112: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 618 | proc writeLine*[Ty](f: File, x: varargs[Ty, `$`]) {.inline, | ^ /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim: In function '_ZN3bam10set_optionE3refIN3bam19BamcolonObjectType_EEN3bam12FormatOptionE3int': /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bam.nim:443:85: warning: passing argument 2 of '_ZN6syncio9writeLineE3ptrIN6syncio5CFileEE7varargsI6stringE' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 443 | stderr.write_line("couldn't set opts") | ^ /usr/lib/nim/lib/std/syncio.nim:618:112: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 618 | proc writeLine*[Ty](f: File, x: varargs[Ty, `$`]) {.inline, | ^ CC: ../src/hts/bgzf/bgzi.nim CC: ../src/hts.nim CC: bgzftest.nim /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim: In function '_ZN3vcf11destroy_vcfE3refIN3vcf19VCFcolonObjectType_EE': /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim:205:89: warning: passing argument 2 of '_ZN6syncio9writeLineE3ptrIN6syncio5CFileEE7varargsI6stringE' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 205 | stderr.write_line "[hts-nim] underlying error closing vcf file" | ^ /usr/lib/nim/lib/std/syncio.nim:618:112: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 618 | proc writeLine*[Ty](f: File, x: varargs[Ty, `$`]) {.inline, | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/htstest.nim: In function 'atmhtstestdotnim_Init000': /build/reproducible-path/nim-hts-0.3.25+ds/tests/htstest.nim:42:204: warning: passing argument 2 of '_ZN3bam10set_fieldsE3refIN3bam19BamcolonObjectType_EE7varargsIN3bam8SamFieldEE' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 42 | check b.set_fields(SamField.SAM_POS, SamField.SAM_RNEXT) == 0 | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mhtstest.nim.c:537:210: note: expected 'tyEnum_SamField__X2cR6BONOoTFDvxhQumPEg *' {aka 'int *'} but argument is of type 'const tyEnum_SamField__X2cR6BONOoTFDvxhQumPEg *' {aka 'const int *'} 537 | N_LIB_PRIVATE N_NIMCALL(NI, _ZN3bam10set_fieldsE3refIN3bam19BamcolonObjectType_EE7varargsIN3bam8SamFieldEE)(tyObject_BamcolonObjectType___zLgK6uZ6NMEpK8cH5JbCUw* b_p0, tyEnum_SamField__X2cR6BONOoTFDvxhQumPEg* fields_p1, NI fields_p1Len_0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ CC: faitest.nim CC: auxtest.nim /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bgzf/bgzi.nim: In function '_ZN4bgzi5closeE3refIN4bgzi20BGZIcolonObjectType_EE': /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bgzf/bgzi.nim:99:84: warning: passing argument 2 of '_ZN6syncio9writeLineE3ptrIN6syncio5CFileEE7varargsI6stringE' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 99 | stderr.write_line("[hts-nim] error writing CSI meta") | ^ /usr/lib/nim/lib/std/syncio.nim:618:112: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 618 | proc writeLine*[Ty](f: File, x: varargs[Ty, `$`]) {.inline, | ^ /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bgzf/bgzi.nim:102:85: warning: passing argument 2 of '_ZN6syncio9writeLineE3ptrIN6syncio5CFileEE7varargsI6stringE' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 102 | stderr.write_line("[hts-nim] error closing bgzf") | ^ /usr/lib/nim/lib/std/syncio.nim:618:112: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 618 | proc writeLine*[Ty](f: File, x: varargs[Ty, `$`]) {.inline, | ^ CC: bamtest.nim /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/csi.nim: In function '_ZN3csi7new_csiE3int3int3int4bool3int3int': /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/csi.nim:40:84: warning: passing argument 2 of '_ZN6syncio9writeLineE3ptrIN6syncio5CFileEE7varargsI6stringE' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 40 | stderr.write_line("[hts-nim] error creating index in new_csi") | ^ /usr/lib/nim/lib/std/syncio.nim:618:112: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 618 | proc writeLine*[Ty](f: File, x: varargs[Ty, `$`]) {.inline, | ^ CC: statstests.nim CC: vcfiso.nim CC: ../src/hts/files.nim CC: test_files.nim CC: all.nim /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim: In function 'atmvcfisodotnim_Init000': /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim:687:201: warning: passing argument 1 of '_ZN6system8containsE9openArrayI6stringE6string' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 687 | if region in ["-3", "*"]: | ^ /usr/lib/nim/lib/system.nim:1765:91: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 1765 | proc contains*[T](a: openArray[T], item: T): bool {.inline.}= | ^ /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim:712:132: warning: passing argument 2 of 'nsuSplitCharSet' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 712 | tid = bcf_hdr_name2id(v.header.hdr, region.split({':'}, maxsplit=1)[0].cstring) | ^ /build/reproducible-path/nim-hts-0.3.25+ds/tests/nimcache/@mvcfiso.nim.c:643:138: note: expected 'NU8 *' {aka 'unsigned char *'} but argument is of type 'const NU8 *' {aka 'const unsigned char *'} 643 | N_LIB_PRIVATE N_NIMCALL(tySequence__sM4lkSb7zS6F7OVMvW9cffQ*, nsuSplitCharSet)(NimStringDesc* s_p0, tySet_tyChar__nmiMWKVIe46vacnhAFrQvw seps_p1, NI maxsplit_p2); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim:723:105: warning: passing argument 2 of '_ZN6syncio9writeLineE3ptrIN6syncio5CFileEE7varargsI6stringE' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 723 | stderr.write_line "[hts-nim/vcf] error with bcf subset format" | ^ /usr/lib/nim/lib/std/syncio.nim:618:112: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 618 | proc writeLine*[Ty](f: File, x: varargs[Ty, `$`]) {.inline, | ^ /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/vcf.nim:731:101: warning: passing argument 2 of '_ZN6syncio9writeLineE3ptrIN6syncio5CFileEE7varargsI6stringE' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 731 | stderr.write_line "hts-nim/vcf: error parsing " | ^ /usr/lib/nim/lib/std/syncio.nim:618:112: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 618 | proc writeLine*[Ty](f: File, x: varargs[Ty, `$`]) {.inline, | ^ /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bgzf/bgzi.nim: In function '_ZN4bgzi14write_intervalE3refIN4bgzi20BGZIcolonObjectType_EE6string6string3int3int': /build/reproducible-path/nim-hts-0.3.25+ds/src/hts/bgzf/bgzi.nim:92:84: warning: passing argument 2 of '_ZN6syncio9writeLineE3ptrIN6syncio5CFileEE7varargsI6stringE' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 92 | stderr.write_line("[hts-nim] error adding to csi index") | ^ /usr/lib/nim/lib/std/syncio.nim:618:112: note: expected 'NimStringDesc **' but argument is of type 'NimStringDesc * const*' 618 | proc writeLine*[Ty](f: File, x: varargs[Ty, `$`]) {.inline, | ^ Hint: [Link] Hint: mm: refc; threads: on; opt: none (DEBUG BUILD, `-d:release` generates faster code) 66492 lines; 10.768s; 113.129MiB peakmem; proj: tests/all; out: /build/reproducible-path/nim-hts-0.3.25+ds/tests/all [SuccessX] Hint: /build/reproducible-path/nim-hts-0.3.25+ds/tests/all [Exec] [Suite] flag test-suite [OK] test flags [Suite] flag cigar-suite [OK] test op [OK] new cigar [Suite] flag hts-suite [OK] test hts [Suite] bgzf-suite [OK] test-write [OK] test-read [OK] bgzf-iterator [E::bgzf_read_block] Failed to read BGZF block data at offset 0 expected 24944 bytes; hread returned 982 [OK] bgzf-iterator-err [OK] write-with-index [OK] read-new-index [OK] csi-iterator [Suite] fai-suite [OK] fai-read [OK] fai chrom_len [OK] fai indexing [OK] issue26 [OK] close [Suite] aux-test [OK] test aux [OK] tag [OK] drop tag [Suite] bam-suite [OK] xam_index [OK] test sa sam [OK] test sa bam [OK] cram writing [OK] set aux [OK] set qname [OK] test from string [Suite] stats suite 0.09873714670538818 0.0022214337732292737 0.0022214337732292737 [OK] binomial [Suite] bugs [OK] vcf/bcf subset alts [Suite] test files [OK] that iteration works [OK] file types [E::hts_open_format] Failed to open file "tests/sadfasdfasdfasdf" : No such file or directory [OK] that bad path gives reasonable error message [OK] readLine make[1]: Leaving directory '/build/reproducible-path/nim-hts-0.3.25+ds' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/nim-hts-dev.substvars debian/nim-hts-examples.substvars rm -fr -- debian/.debhelper/generated/nim-hts-dev/ debian/nim-hts-dev/ debian/tmp/ debian/.debhelper/generated/nim-hts-examples/ debian/nim-hts-examples/ dh_install install -m0755 -d debian/nim-hts-dev/usr/share/nimble/hts/ cp --reflink=auto -a ./src/hts ./src/hts.nim debian/nim-hts-dev/usr/share/nimble/hts// install -m0755 -d debian/nim-hts-examples/usr/share/doc/nim-hts-examples cp --reflink=auto -a ./debian/missing-sources/HG02002.sam ./debian/tests/run-unit-test ./debian/tests/test1.nim ./debian/tests/test2.nim ./tests/HG02002.bam ./tests/HG02002.bam.bai ./tests/HG02002.bam.csi ./tests/aa.fa ./tests/aa.fa.fai ./tests/all.nim ./tests/auxtest.nim ./tests/bamtest.nim ./tests/bgzftest.nim ./tests/cigartest.nim ./tests/decomposed.vcf ./tests/faitest.nim ./tests/flagtest.nim ./tests/htstest.nim ./tests/run.nim ./tests/sa.bam ./tests/sa.bam.bai ./tests/sa.sam ./tests/sample.fa ./tests/sample.fa.fai ./tests/statstests.nim ./tests/test.bcf ./tests/test.bcf.csi ./tests/test_files ./tests/test_files.nim ./tests/test_readme.nim ./tests/unknown-alts.vcf ./tests/vcfiso.nim ./tests/vcftest.nim debian/nim-hts-examples/usr/share/doc/nim-hts-examples/ dh_installdocs install -m0755 -d debian/nim-hts-dev/usr/share/doc/nim-hts-dev install -p -m0644 debian/copyright debian/nim-hts-dev/usr/share/doc/nim-hts-dev/copyright install -p -m0644 debian/copyright debian/nim-hts-examples/usr/share/doc/nim-hts-examples/copyright dh_installchangelogs install -m0755 -d debian/nim-hts-dev/usr/share/doc/nim-hts-dev install -p -m0644 debian/.debhelper/generated/nim-hts-dev/dh_installchangelogs.dch.trimmed debian/nim-hts-dev/usr/share/doc/nim-hts-dev/changelog.Debian install -p -m0644 ./CHANGES.md debian/nim-hts-dev/usr/share/doc/nim-hts-dev/changelog install -m0755 -d debian/nim-hts-examples/usr/share/doc/nim-hts-examples install -p -m0644 debian/.debhelper/generated/nim-hts-examples/dh_installchangelogs.dch.trimmed debian/nim-hts-examples/usr/share/doc/nim-hts-examples/changelog.Debian install -p -m0644 ./CHANGES.md debian/nim-hts-examples/usr/share/doc/nim-hts-examples/changelog dh_perl dh_link dh_strip_nondeterminism Using 1758833460 as canonical time Normalizing debian/nim-hts-examples/usr/share/doc/nim-hts-examples/test_files/simple.tsv.gz using File::StripNondeterminism::handlers::gzip dh_compress cd debian/nim-hts-examples cd debian/nim-hts-dev chmod a-x usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim chmod a-x usr/share/doc/nim-hts-dev/changelog usr/share/doc/nim-hts-dev/changelog.Debian gzip -9nf usr/share/doc/nim-hts-dev/changelog usr/share/doc/nim-hts-dev/changelog.Debian gzip -9nf usr/share/doc/nim-hts-examples/HG02002.bam usr/share/doc/nim-hts-examples/HG02002.bam.bai usr/share/doc/nim-hts-examples/HG02002.sam usr/share/doc/nim-hts-examples/changelog usr/share/doc/nim-hts-examples/changelog.Debian usr/share/doc/nim-hts-examples/sa.bam usr/share/doc/nim-hts-examples/sa.bam.bai usr/share/doc/nim-hts-examples/sa.sam usr/share/doc/nim-hts-examples/test.bcf usr/share/doc/nim-hts-examples/unknown-alts.vcf usr/share/doc/nim-hts-examples/vcftest.nim cd '/build/reproducible-path/nim-hts-0.3.25+ds' cd '/build/reproducible-path/nim-hts-0.3.25+ds' dh_fixperms find debian/nim-hts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/nim-hts-examples ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/nim-hts-examples/usr/share/doc -type f -a -true -a ! -regex 'debian/nim-hts-examples/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nim-hts-examples/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/nim-hts-examples -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nim-hts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/nim-hts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nim-hts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/nim-hts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing dh_installdeb install -m0755 -d debian/nim-hts-dev/DEBIAN install -m0755 -d debian/nim-hts-examples/DEBIAN dh_gencontrol install -m0755 -d debian/nim-hts-dev/DEBIAN echo misc:Depends= >> debian/nim-hts-dev.substvars echo misc:Pre-Depends= >> debian/nim-hts-dev.substvars dpkg-gencontrol -pnim-hts-dev -ldebian/changelog -Tdebian/nim-hts-dev.substvars -cdebian/control -Pdebian/nim-hts-dev install -m0755 -d debian/nim-hts-examples/DEBIAN echo misc:Depends= >> debian/nim-hts-examples.substvars echo misc:Pre-Depends= >> debian/nim-hts-examples.substvars dpkg-gencontrol -pnim-hts-examples -ldebian/changelog -Tdebian/nim-hts-examples.substvars -cdebian/control -Pdebian/nim-hts-examples chmod 0644 -- debian/nim-hts-dev/DEBIAN/control chmod 0644 -- debian/nim-hts-examples/DEBIAN/control dh_md5sums install -m0755 -d debian/nim-hts-dev/DEBIAN install -m0755 -d debian/nim-hts-examples/DEBIAN cd debian/nim-hts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/nim-hts-examples >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/nim-hts-dev/DEBIAN/md5sums chmod 0644 -- debian/nim-hts-examples/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/nim-hts-dev .. dpkg-deb --root-owner-group --build debian/nim-hts-examples .. dpkg-deb: building package 'nim-hts-dev' in '../nim-hts-dev_0.3.25+ds-3_all.deb'. dpkg-deb: building package 'nim-hts-examples' in '../nim-hts-examples_0.3.25+ds-3_all.deb'. dpkg-genbuildinfo --build=binary -O../nim-hts_0.3.25+ds-3_amd64.buildinfo dpkg-genchanges --build=binary -O../nim-hts_0.3.25+ds-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2656030 and its subdirectories I: Current time: Tue Oct 21 22:13:46 -12 2025 I: pbuilder-time-stamp: 1761128026 Wed Oct 22 10:13:47 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Wed Oct 22 10:13:47 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Wed Oct 22 10:14:41 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Wed Oct 22 10:14:41 UTC 2025 I: nim-hts_0.3.25+ds-3_amd64.changes: Format: 1.8 Date: Fri, 26 Sep 2025 02:21:00 +0530 Source: nim-hts Binary: nim-hts-dev nim-hts-examples Architecture: all Version: 0.3.25+ds-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: nim-hts-dev - wrapper for hts C library nim-hts-examples - examples for nim-hts: wrapper for hts C library Closes: 1112655 Changes: nim-hts (0.3.25+ds-3) unstable; urgency=medium . * Team Upload. * Backport upstream patch to build with newer nim compiler * d/patches: (Closes: #1112655) + Skip some failing tests + Add patch to fixup fai test * Update Build-test command as in hts nimble file * Drop myself from uploaders. Checksums-Sha1: 877b0a9b6603bed3e78d99b5f33a88eda752a261 36548 nim-hts-dev_0.3.25+ds-3_all.deb 04a1751f5d72351c3ff3d42595c5f0720476c22e 1089424 nim-hts-examples_0.3.25+ds-3_all.deb bfe25b22fa322ea163a975f8ad81cefc5aa3b074 7013 nim-hts_0.3.25+ds-3_amd64.buildinfo Checksums-Sha256: 05c5777d80b9c84ac2c36cb9f46d82212103c6085c60cd33f66053dacd7c55da 36548 nim-hts-dev_0.3.25+ds-3_all.deb a6b835f4dcedd2721575abbf6e8bb5448ec7e21dcbcdfcace48dd5944a47240b 1089424 nim-hts-examples_0.3.25+ds-3_all.deb 20c8635f9a105f46929a205bf4c8c10ed90a2971f88e7e20685f4f60dc08a788 7013 nim-hts_0.3.25+ds-3_amd64.buildinfo Files: 3d61ae25310df948677099da714d096b 36548 libs optional nim-hts-dev_0.3.25+ds-3_all.deb 8baf6cbc9f6317e34d02560573a57579 1089424 libs optional nim-hts-examples_0.3.25+ds-3_all.deb d00e2a330bd88e63bf57688b3ccb162f 7013 libs optional nim-hts_0.3.25+ds-3_amd64.buildinfo Wed Oct 22 10:14:42 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_23-75993.service; invocation ID: 697afbc901b347d2a91b1988d518ed7c # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.8W4uwF7w/nim-hts_0.3.25+ds-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.8W4uwF7w/nim-hts_0.3.25+ds-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.8W4uwF7w/nim-hts_0.3.25+ds-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.8W4uwF7w/b1/nim-hts_0.3.25+ds-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.8W4uwF7w/b2/nim-hts_0.3.25+ds-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 192ms CPU time consumed: 163ms Memory peak: 18M (swap: 0B) Wed Oct 22 10:14:42 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Wed Oct 22 10:14:42 UTC 2025 I: nim-hts from forky built successfully and reproducibly on amd64. Wed Oct 22 10:14:43 UTC 2025 I: Removing signed nim-hts_0.3.25+ds-3_amd64.buildinfo.asc files: removed './b1/nim-hts_0.3.25+ds-3_amd64.buildinfo.asc' removed './b2/nim-hts_0.3.25+ds-3_amd64.buildinfo.asc'