Sun Sep 14 10:25:56 UTC 2025 I: starting to build ntcard/forky/amd64 on jenkins on '2025-09-14 10:25' Sun Sep 14 10:25:56 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_34/80679/console.log Sun Sep 14 10:25:56 UTC 2025 I: Downloading source for forky/ntcard=1.2.2+dfsg-9 --2025-09-14 10:25:57-- http://deb.debian.org/debian/pool/main/n/ntcard/ntcard_1.2.2%2bdfsg-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2157 (2.1K) [text/prs.lines.tag] Saving to: ‘ntcard_1.2.2+dfsg-9.dsc’ 0K .. 100% 252M=0s 2025-09-14 10:25:57 (252 MB/s) - ‘ntcard_1.2.2+dfsg-9.dsc’ saved [2157/2157] Sun Sep 14 10:25:57 UTC 2025 I: ntcard_1.2.2+dfsg-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ntcard Binary: ntcard Architecture: any Version: 1.2.2+dfsg-9 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra , Étienne Mollier Homepage: https://github.com/bcgsc/ntCard Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/ntcard Vcs-Git: https://salsa.debian.org/med-team/ntcard.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), architecture-is-64-bit Package-List: ntcard deb science optional arch=any Checksums-Sha1: 41dbffe6384de113dec420f1cb68f90969aa03db 62710 ntcard_1.2.2+dfsg.orig.tar.gz 3bef27e49643b9f185c5ced8a064de883f2dc5a3 772540 ntcard_1.2.2+dfsg-9.debian.tar.xz Checksums-Sha256: 74d063a840f04ede0442c7ca061b569ac5423b9632beb120d80e283728ac5345 62710 ntcard_1.2.2+dfsg.orig.tar.gz 60253be65690bfc5beaeedb84f60bd09d8150a746a68e4a2dd32eee378fea253 772540 ntcard_1.2.2+dfsg-9.debian.tar.xz Files: 184d4ad9728fdc3c6a1f301e07d2fa20 62710 ntcard_1.2.2+dfsg.orig.tar.gz 4b6bbb6540873cb088c1912bd7897744 772540 ntcard_1.2.2+dfsg-9.debian.tar.xz Dgit: f073d01f618e89b92590105e8d4faec8bf47a4e8 debian archive/debian/1.2.2+dfsg-9 https://git.dgit.debian.org/ntcard -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmar+A4UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdquRQ//RwC81TERsiruAkT0BKfKnYtNPyEH 2pHVauvG3NY+YF4sWcFvlJgNTTNXqw7G2VwIB7z79gPvq5Cj9eCD6nJo+RhpaQCK owm+s2QuQfoeubGaz0D+nW/46i3ZqYBnxDNsS+94phtYbU11QK2aCdTMDw6ike8y 8JxX1sJRGft0uIHfHrvwM6b2nIbWtWHS/VP0XIce4k4EzYAepeGct/F8Toggj96t /q8z1speriqusAdGowJiVzO0a7BoFZYgRlOkIvH/EjWcYNj9tenhYo5mr7xdekt0 8ofz9/LitkShkGo9rNeajXBWbTspwwLHJEu5WscTuV6b6+DfZREth/qQfdmdV8Pu QxkUaXoTS5Fqpkt+VbqizbtQkGqF4o6NMEUA98ZVZl1Z6s0Gnpyyi8S6KjJroQ7T I31mWE2VKMttOv5IeiLGhFzXD/LaVaYe1snQXeZe/pVokcK1rlIa4JGBYwJIjaLl jmgDiXAZCOQyZ7GOXv8ZfQvPKE385SHf9H7FxaEReyGQPvsuLpYdu3v3aBup2ldb fsoAblk/QZRnlvxOnW4T9pq7glldrpQ+vJHljL4iY24i4pijoHTo7QJSelf196jJ mT+DLKsSP1o41YY4NRIqRBu9JqvJ2TLhI+TLP9sLRkDK9iemoiBe8y8d4858x6TK LRKLsavBtZBmB1g= =B7dz -----END PGP SIGNATURE----- Sun Sep 14 10:25:57 UTC 2025 I: Checking whether the package is not for us Sun Sep 14 10:25:57 UTC 2025 I: Starting 1st build on remote node infom02-amd64.debian.net. Sun Sep 14 10:25:57 UTC 2025 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Sun Sep 14 10:28:04 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 17 04:48:59 -12 2026 I: pbuilder-time-stamp: 1792255739 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ntcard_1.2.2+dfsg-9.dsc] I: copying [./ntcard_1.2.2+dfsg.orig.tar.gz] I: copying [./ntcard_1.2.2+dfsg-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ntcard_1.2.2+dfsg-9.dsc: no acceptable signature found dpkg-source: info: extracting ntcard in ntcard-1.2.2+dfsg dpkg-source: info: unpacking ntcard_1.2.2+dfsg.orig.tar.gz dpkg-source: info: unpacking ntcard_1.2.2+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-packaged-nthash.patch dpkg-source: info: applying fix-clean-target.patch dpkg-source: info: applying fixup-configure.ac.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/794343/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b31af8b851454c29850dbee3f2b265c7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='794343' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xVXoT7e5/pbuilderrc_Y2eY --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xVXoT7e5/b1 --logfile b1/build.log ntcard_1.2.2+dfsg-9.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/794343/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 architecture-properties amd64 0.2.6 [2336 B] Get: 12 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 23 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Fetched 11.2 MB in 3s (4447 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-2_amd64.deb ... Unpacking bsdextrautils (2.41.1-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package architecture-properties:amd64. Preparing to unpack .../10-architecture-properties_0.2.6_amd64.deb ... Unpacking architecture-properties:amd64 (0.2.6) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../24-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../25-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up architecture-properties:amd64 (0.2.6) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ntcard-1.2.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ntcard_1.2.2+dfsg-9_source.changes dpkg-buildpackage: info: source package ntcard dpkg-buildpackage: info: source version 1.2.2+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:7: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.ac:7: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:7: the top level configure.ac:29: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:29: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:29: the top level configure.ac:38: warning: The macro 'AC_FUNC_SETVBUF_REVERSED' is obsolete. Remove it and all references to SETVBUF_REVERSED. ./lib/autoconf/functions.m4:1785: AC_FUNC_SETVBUF_REVERSED is expanded from... configure.ac:38: the top level configure.ac:19: installing './compile' configure.ac:35: installing './config.guess' configure.ac:35: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' Makefile.am: installing './depcomp' debian/rules execute_before_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' cp -a debian/vendor/*.hpp /build/reproducible-path/ntcard-1.2.2+dfsg make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gawk... (cached) mawk checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for ranlib... ranlib checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for vfork.h... no checking for dlfcn.h... yes checking for fcntl.h... yes checking for float.h... yes checking for limits.h... yes checking for stddef.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/param.h... yes checking for zlib.h... no checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for dup2... yes checking for gethostname... yes checking for getopt_long... yes checking for getpagesize... yes checking for memset... yes checking for strdup... yes checking for strerror... yes checking for strtoul... yes checking for pid_t... yes checking for fork... yes checking for vfork... yes checking for vprintf... yes checking for working fork... yes checking for working vfork... (cached) yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for working memcmp... yes checking for GNU libc compatible realloc... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for ptrdiff_t... yes checking for mode_t... yes checking for pid_t... (cached) yes checking for size_t... yes checking for ssize_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for sqrt in -lm... yes checking for pow... yes checking for sqrt... yes checking for ceilf... yes checking for dlsym in -ldl... yes checking for gzwrite in -lz... no checking for g++ option to support OpenMP... -fopenmp checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j16 make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' make all-recursive make[2]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' Making all in data make[3]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data' make[3]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o ntcard-ntcard.o `test -f 'ntcard.cpp' || echo './'`ntcard.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o nthll-nthll.o `test -f 'nthll.cpp' || echo './'`nthll.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o Common/ntcard-Uncompress.o `test -f 'Common/Uncompress.cpp' || echo './'`Common/Uncompress.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o Common/ntcard-SignalHandler.o `test -f 'Common/SignalHandler.cpp' || echo './'`Common/SignalHandler.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o Common/ntcard-Fcontrol.o `test -f 'Common/Fcontrol.cpp' || echo './'`Common/Fcontrol.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o Common/nthll-Uncompress.o `test -f 'Common/Uncompress.cpp' || echo './'`Common/Uncompress.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o Common/nthll-SignalHandler.o `test -f 'Common/SignalHandler.cpp' || echo './'`Common/SignalHandler.cpp g++ -DHAVE_CONFIG_H -I. -I./Common -I/usr/include -I/build/reproducible-path/ntcard-1.2.2+dfsg -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o Common/nthll-Fcontrol.o `test -f 'Common/Fcontrol.cpp' || echo './'`Common/Fcontrol.cpp g++ -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wl,-z,relro -Wl,-z,now -o nthll Common/nthll-Uncompress.o Common/nthll-SignalHandler.o Common/nthll-Fcontrol.o nthll-nthll.o -ldl -lm g++ -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/build/reproducible-path/ntcard-1.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wl,-z,relro -Wl,-z,now -o ntcard Common/ntcard-Uncompress.o Common/ntcard-SignalHandler.o Common/ntcard-Fcontrol.o ntcard-ntcard.o -ldl -lm make[3]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' make[2]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' echo "I: Tests try to download external files, skip build time tests" I: Tests try to download external files, skip build time tests make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/ntcard/ make -j16 install DESTDIR=/build/reproducible-path/ntcard-1.2.2\+dfsg/debian/ntcard AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' Making install in data make[2]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data' make[3]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data' make[2]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg/data' make[2]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' make[3]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' /usr/bin/mkdir -p '/build/reproducible-path/ntcard-1.2.2+dfsg/debian/ntcard/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/ntcard-1.2.2+dfsg/debian/ntcard/usr/share/doc/ntcard' /usr/bin/install -c -m 644 ChangeLog CITATION.bib LICENSE README.md '/build/reproducible-path/ntcard-1.2.2+dfsg/debian/ntcard/usr/share/doc/ntcard' /usr/bin/install -c ntcard nthll '/build/reproducible-path/ntcard-1.2.2+dfsg/debian/ntcard/usr/bin' make[3]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' make[2]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' dh_installdocs debian/rules execute_after_dh_installdocs make[1]: Entering directory '/build/reproducible-path/ntcard-1.2.2+dfsg' find debian -name 'LICENSE' | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/ntcard-1.2.2+dfsg' dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ntcard' in '../ntcard_1.2.2+dfsg-9_amd64.deb'. dpkg-deb: building package 'ntcard-dbgsym' in '../ntcard-dbgsym_1.2.2+dfsg-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ntcard_1.2.2+dfsg-9_amd64.buildinfo dpkg-genchanges --build=binary -O../ntcard_1.2.2+dfsg-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/794343 and its subdirectories I: Current time: Sat Oct 17 04:51:04 -12 2026 I: pbuilder-time-stamp: 1792255864 Sun Sep 14 10:28:05 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Sun Sep 14 10:28:05 UTC 2025 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Sun Sep 14 10:29:31 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. Sun Sep 14 10:29:31 UTC 2025 I: ntcard_1.2.2+dfsg-9_amd64.changes: Format: 1.8 Date: Thu, 01 Aug 2024 22:58:36 +0200 Source: ntcard Binary: ntcard ntcard-dbgsym Architecture: amd64 Version: 1.2.2+dfsg-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: ntcard - Streaming algorithm to estimate cardinality in genomics datasets Closes: 1075324 Changes: ntcard (1.2.2+dfsg-9) unstable; urgency=medium . * d/v/nthash.hpp: fix an off-by-one error spotted by gcc-14. (Closes: #1075324) * fixup-configure.ac.patch: new: fix configure script issue: ./configure: line 3675: test: syntax error: `-O2' unexpected * d/control: declare compliance to standards version 4.7.0. * d/control: declare architecture-is-64-bit. Checksums-Sha1: c91585013d9104be6ce05fbe0c0196cdf8d9164c 309204 ntcard-dbgsym_1.2.2+dfsg-9_amd64.deb 7196e19ad6e8e5352fe2c966bf99517083d98159 4913 ntcard_1.2.2+dfsg-9_amd64.buildinfo cfacd3f4b8303d2ef5ecc8e0a15c745ec101b3bc 43060 ntcard_1.2.2+dfsg-9_amd64.deb Checksums-Sha256: 9c2fb167f0da99a537c839620a5a826125b8dfa2be742596b62dd07aa81f02db 309204 ntcard-dbgsym_1.2.2+dfsg-9_amd64.deb ecd3c50f7d7a741f86d4250e9388e67ff568b31a86bf627dc8a56acb3efa933c 4913 ntcard_1.2.2+dfsg-9_amd64.buildinfo 3a6e3addc1b1a2bb868d8a05391b28dbf2401705993d037437b62a0d4875a794 43060 ntcard_1.2.2+dfsg-9_amd64.deb Files: 9076fc53787cea847be05bd276e3ad5c 309204 debug optional ntcard-dbgsym_1.2.2+dfsg-9_amd64.deb 8854150fe83dd31e90f2e12d88fcf5e0 4913 science optional ntcard_1.2.2+dfsg-9_amd64.buildinfo 2d7b87d14dceebf99cfaf1e316bae8a5 43060 science optional ntcard_1.2.2+dfsg-9_amd64.deb Sun Sep 14 10:29:32 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_34-80679.service; invocation ID: dc1d6d77fa204c06bdbc2ab75c3f3cad # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.xVXoT7e5/ntcard_1.2.2+dfsg-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.xVXoT7e5/ntcard_1.2.2+dfsg-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.xVXoT7e5/ntcard_1.2.2+dfsg-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.xVXoT7e5/b1/ntcard_1.2.2+dfsg-9_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.xVXoT7e5/b2/ntcard_1.2.2+dfsg-9_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 209ms CPU time consumed: 174ms Memory peak: 18.2M (swap: 0B) Sun Sep 14 10:29:32 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sun Sep 14 10:29:32 UTC 2025 I: ntcard from forky built successfully and reproducibly on amd64. Sun Sep 14 10:29:33 UTC 2025 I: Removing signed ntcard_1.2.2+dfsg-9_amd64.buildinfo.asc files: removed './b1/ntcard_1.2.2+dfsg-9_amd64.buildinfo.asc' removed './b2/ntcard_1.2.2+dfsg-9_amd64.buildinfo.asc'