Tue Aug 26 23:04:15 UTC 2025 I: starting to build packmol/forky/amd64 on jenkins on '2025-08-26 23:04' Tue Aug 26 23:04:15 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_36/78237/console.log Tue Aug 26 23:04:16 UTC 2025 I: Downloading source for forky/packmol=1:21.1.0-1 --2025-08-26 23:04:16-- http://deb.debian.org/debian/pool/main/p/packmol/packmol_21.1.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1920 (1.9K) [text/prs.lines.tag] Saving to: ‘packmol_21.1.0-1.dsc’ 0K . 100% 235M=0s 2025-08-26 23:04:16 (235 MB/s) - ‘packmol_21.1.0-1.dsc’ saved [1920/1920] Tue Aug 26 23:04:16 UTC 2025 I: packmol_21.1.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: packmol Binary: packmol Architecture: any Version: 1:21.1.0-1 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: http://m3g.iqm.unicamp.br/packmol/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/debichem-team/packmol Vcs-Git: https://salsa.debian.org/debichem-team/packmol.git Build-Depends: debhelper-compat (= 13), cmake, gfortran Package-List: packmol deb science optional arch=any Checksums-Sha1: 515fff483a4430b765658dd7c26dc871fc2502c6 634772 packmol_21.1.0.orig.tar.gz 16d7b46a9e685178da8cddeac76ccd182a05fa3e 3132 packmol_21.1.0-1.debian.tar.xz Checksums-Sha256: bcb64849bd490c329018210cf91375871108004ac8bf3e8cf9463e42e551fe46 634772 packmol_21.1.0.orig.tar.gz 62c9920ad2c3746db2328b705ffa6f1103fcd5c012b16c88a689e536050a72e6 3132 packmol_21.1.0-1.debian.tar.xz Files: 659dedd6afb8ca2c7871b91dfb2fa7ce 634772 packmol_21.1.0.orig.tar.gz ffc743f1174f8ff1dc1a6dd5cc6a627b 3132 packmol_21.1.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAminGNUACgkQVz7x5L1a AfqRlhAAh5ClnpQnIFsN2ldjahmQH9M3CVeyrBJYp/QNIEK6ZM9SIvNWvMo5fZsD oxO5hTJt0A7jA9ZpMKhBojbysgVcXnz69a2teDLo0qJ9Cg8cdRoNbFuALfEdzP7G +0svWT7HzelRHyK6SAMextwGyRICLsI9Q2ZEho4KAjcy6YnFFZrscLo5B1180fCj VKu9aGLGrKXOMGlDnHde5qoQt4QTNPTNjoYabNCnmJKK+NUDHjUEANJuAfpS5h2p /6N/DRF3PXX26ireQyozTSCvINiT7wm/93sb7Kh8MXse+Xt4wl1wUvB+rZYIqQCI yPddYE4f9PdROJl678Jj5T++WxPAfNmQ6nv+nWkqkshaUV80i655xBGh8f4n+NaG PiKxWfwiAadOGiaNF4L901KBJ9FYIgignIiSs/cWeO/fy3wqR/hOAiK6AbhiLww3 ynumO9mir2lAn3nzuGfH2+umS56nwn94xAC8g3rN7eAOwlPGJu8ofUUR8tT2NDWe 1bBU9c1AtSVBP5kKgqW9+ugQYUpeP0ethbBxtTPQlZ06Vv1vjkqQsucnOOJOohTD WHBN70nDyUClYDSMzw+nupUuQ8wZk8yFK107srYaimSNkmUZ1PVH/1T/RR6L/sl+ dm3nSFOt12TTPlSq5rXygFmNqStxMcR1Wy4TdlUyrUiUENz2/uE= =lWLu -----END PGP SIGNATURE----- Tue Aug 26 23:04:16 UTC 2025 I: Checking whether the package is not for us Tue Aug 26 23:04:16 UTC 2025 I: Starting 1st build on remote node infom02-amd64.debian.net. Tue Aug 26 23:04:16 UTC 2025 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Tue Aug 26 23:05:40 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Sep 28 17:27:17 -12 2026 I: pbuilder-time-stamp: 1790659637 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [packmol_21.1.0-1.dsc] I: copying [./packmol_21.1.0.orig.tar.gz] I: copying [./packmol_21.1.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./packmol_21.1.0-1.dsc: no acceptable signature found dpkg-source: info: extracting packmol in packmol-21.1.0 dpkg-source: info: unpacking packmol_21.1.0.orig.tar.gz dpkg-source: info: unpacking packmol_21.1.0-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3829081/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f56988c79de0467d8410995b9e4cdfe8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3829081' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tRykueMw/pbuilderrc_Ykc3 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tRykueMw/b1 --logfile b1/build.log packmol_21.1.0-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3829081/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, gfortran dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19855 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran-14-dev{a} libgfortran5{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 65 newly installed, 0 to remove and 0 not upgraded. Need to get 44.8 MB of archives. After unpacking 160 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.1 [640 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 27 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.15.0-1 [392 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 48 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.25 [91.6 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-4 [539 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 54 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 debhelper all 13.25 [937 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-1 [862 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libgfortran-14-dev amd64 14.3.0-5 [879 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.3.0-5 [11.7 MB] Get: 63 http://deb.debian.org/debian forky/main amd64 gfortran-14 amd64 14.3.0-5 [15.2 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 65 http://deb.debian.org/debian forky/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Fetched 44.8 MB in 2s (29.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19855 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.1-1_amd64.deb ... Unpacking bsdextrautils (2.41.1-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. 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I: Building the package I: Running cd /build/reproducible-path/packmol-21.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../packmol_21.1.0-1_source.changes dpkg-buildpackage: info: source package packmol dpkg-buildpackage: info: source version 1:21.1.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake dh_auto_configure -O--buildsystem=cmake cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. 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/usr/bin/cmake -E cmake_copy_f90_mod swaptypemod.mod CMakeFiles/packmol.dir/swaptypemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod exit_codes.mod CMakeFiles/packmol.dir/exit_codes.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod sizes.mod CMakeFiles/packmol.dir/sizes.mod.stamp GNU /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/exit_codes.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod ahestetic.mod CMakeFiles/packmol.dir/ahestetic.mod.stamp GNU /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/swaptypemod.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod pbc.mod CMakeFiles/packmol.dir/pbc.mod.stamp GNU /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/sizes.f90.o.provides.build /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/ahestetic.f90.o.provides.build [ 29%] Building Fortran object CMakeFiles/packmol.dir/src/flashmod.f90.o [ 31%] Building Fortran object CMakeFiles/packmol.dir/src/compute_data.f90.o [ 34%] Building Fortran object CMakeFiles/packmol.dir/src/input.f90.o [ 36%] Building Fortran object CMakeFiles/packmol.dir/src/usegencan.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/flashmod.f90 -o CMakeFiles/packmol.dir/src/flashmod.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/compute_data.f90 -o CMakeFiles/packmol.dir/src/compute_data.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/input.f90 -o CMakeFiles/packmol.dir/src/input.f90.o /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/pbc.f90.o.provides.build [ 41%] Building Fortran object CMakeFiles/packmol.dir/src/title.f90.o [ 41%] Building Fortran object CMakeFiles/packmol.dir/src/comparegrad.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/usegencan.f90 -o CMakeFiles/packmol.dir/src/usegencan.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/comparegrad.f90 -o CMakeFiles/packmol.dir/src/comparegrad.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/title.f90 -o CMakeFiles/packmol.dir/src/title.f90.o /usr/bin/cmake -E cmake_copy_f90_mod flashsort.mod CMakeFiles/packmol.dir/flashsort.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod usegencan.mod CMakeFiles/packmol.dir/usegencan.mod.stamp GNU /build/reproducible-path/packmol-21.1.0/src/gencan.f:62:37: 62 | subroutine evalnal(n,x,m,lambda,rho,g,flag) | 1 Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:62:41: 62 | subroutine evalnal(n,x,m,lambda,rho,g,flag) | 1 Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:2571:40: 2571 | +steabs,epsrel,epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'infabs' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:2571:33: 2571 | +steabs,epsrel,epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:2571:12: 2571 | +steabs,epsrel,epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'steabs' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:2570:71: 2570 | +fmin,maxfc,iprint,fcnt,inform,xtrial,d,gamma,sigma1,sigma2,sterel, | 1 Warning: Unused dummy argument 'sterel' at (1) [-Wunused-dummy-argument] /usr/bin/cmake -E cmake_copy_f90_mod input.mod CMakeFiles/packmol.dir/input.mod.stamp GNU /build/reproducible-path/packmol-21.1.0/src/gencan.f:3805:61: 3805 | +sigma1,sigma2,sterel,steabs,epsrel,epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'infabs' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:3805:54: 3805 | +sigma1,sigma2,sterel,steabs,epsrel,epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] /usr/bin/cmake -E cmake_copy_f90_mod compute_data.mod CMakeFiles/packmol.dir/compute_data.mod.stamp GNU /build/reproducible-path/packmol-21.1.0/src/gencan.f:4:36: 4 | subroutine evalal(n,x,m,lambda,rho,f,flag) | 1 Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:4:40: 4 | subroutine evalal(n,x,m,lambda,rho,f,flag) | 1 Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:2967:19: 2967 | +epsabs,infrel,infabs) | 1 Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:5165:19: 5165 | +steabs,inform) | 1 Warning: Unused dummy argument 'inform' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:5164:52: 5164 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1 Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:5164:56: 5164 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1 Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:5165:12: 5165 | +steabs,inform) | 1 Warning: Unused dummy argument 'steabs' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:5164:71: 5164 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1 Warning: Unused dummy argument 'sterel' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:5164:64: 5164 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1 Warning: Unused dummy argument 'xtmp' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.0/src/gencan.f:125:25: 125 | subroutine evalhd(n) | 1 Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument] /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/usegencan.f90.o.provides.build /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/flashmod.f90.o.provides.build /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/input.f90.o.provides.build /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/compute_data.f90.o.provides.build [ 43%] Building Fortran object CMakeFiles/packmol.dir/src/cli_parser.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/cli_parser.f90 -o CMakeFiles/packmol.dir/src/cli_parser.f90.o [ 48%] Building Fortran object CMakeFiles/packmol.dir/src/pgencan.f90.o [ 46%] Building Fortran object CMakeFiles/packmol.dir/src/strlength.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/pgencan.f90 -o CMakeFiles/packmol.dir/src/pgencan.f90.o [ 51%] Building Fortran object CMakeFiles/packmol.dir/src/cell_indexing.f90.o [ 53%] Building Fortran object CMakeFiles/packmol.dir/src/cenmass.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/strlength.f90 -o CMakeFiles/packmol.dir/src/strlength.f90.o [ 56%] Building Fortran object CMakeFiles/packmol.dir/src/getinp.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/cell_indexing.f90 -o CMakeFiles/packmol.dir/src/cell_indexing.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/cenmass.f90 -o CMakeFiles/packmol.dir/src/cenmass.f90.o [ 58%] Building Fortran object CMakeFiles/packmol.dir/src/output.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/getinp.f90 -o CMakeFiles/packmol.dir/src/getinp.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/output.f90 -o CMakeFiles/packmol.dir/src/output.f90.o [ 60%] Building Fortran object CMakeFiles/packmol.dir/src/setsizes.f90.o [ 63%] Building Fortran object CMakeFiles/packmol.dir/src/gparc.f90.o [ 65%] Building Fortran object CMakeFiles/packmol.dir/src/checkpoint.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/setsizes.f90 -o CMakeFiles/packmol.dir/src/setsizes.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/gparc.f90 -o CMakeFiles/packmol.dir/src/gparc.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/checkpoint.f90 -o CMakeFiles/packmol.dir/src/checkpoint.f90.o [ 70%] Building Fortran object CMakeFiles/packmol.dir/src/fparc.f90.o [ 70%] Building Fortran object CMakeFiles/packmol.dir/src/writesuccess.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/fparc.f90 -o CMakeFiles/packmol.dir/src/fparc.f90.o [ 73%] Building Fortran object CMakeFiles/packmol.dir/src/gwalls.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. 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/build/reproducible-path/packmol-21.1.0/src/tobar.f90 -o CMakeFiles/packmol.dir/src/tobar.f90.o [ 82%] Building Fortran object CMakeFiles/packmol.dir/src/restmol.f90.o [ 82%] Building Fortran object CMakeFiles/packmol.dir/src/swaptype.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/restmol.f90 -o CMakeFiles/packmol.dir/src/restmol.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/swaptype.f90 -o CMakeFiles/packmol.dir/src/swaptype.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cell_indexing.mod CMakeFiles/packmol.dir/cell_indexing.mod.stamp GNU [ 85%] Building Fortran object CMakeFiles/packmol.dir/src/heuristics.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/heuristics.f90 -o CMakeFiles/packmol.dir/src/heuristics.f90.o /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/cell_indexing.f90.o.provides.build [ 87%] Building Fortran object CMakeFiles/packmol.dir/src/initial.f90.o [ 90%] Building Fortran object CMakeFiles/packmol.dir/src/resetcells.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/initial.f90 -o CMakeFiles/packmol.dir/src/initial.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/resetcells.f90 -o CMakeFiles/packmol.dir/src/resetcells.f90.o [ 92%] Building Fortran object CMakeFiles/packmol.dir/src/computef.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cli_parser.mod CMakeFiles/packmol.dir/cli_parser.mod.stamp GNU /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/computef.f90 -o CMakeFiles/packmol.dir/src/computef.f90.o [ 95%] Building Fortran object CMakeFiles/packmol.dir/src/computeg.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/src/computeg.f90 -o CMakeFiles/packmol.dir/src/computeg.f90.o /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/cli_parser.f90.o.provides.build [ 97%] Building Fortran object CMakeFiles/packmol.dir/app/packmol.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -Wall -c /build/reproducible-path/packmol-21.1.0/app/packmol.f90 -o CMakeFiles/packmol.dir/app/packmol.f90.o /build/reproducible-path/packmol-21.1.0/src/getinp.f90:979:15: 979 | if(ires.ne.ireslast) then | ^ Warning: 'ireslast' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/src/getinp.f90:964:35: 964 | integer :: iread, ires, ireslast, nres, ioerr | ^ note: 'ireslast' was declared here /build/reproducible-path/packmol-21.1.0/src/output.f90:350:36: 350 | nres = ilres - ifres + 1 | ^ Warning: 'ilres' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/src/output.f90:19:39: 19 | iimol, ichain, iatom, irec, ilres, ifres,& | ^ note: 'ilres' was declared here /build/reproducible-path/packmol-21.1.0/app/packmol.f90:614:44: 614 | iratom(icart,iratcount) = iirest | ^ Warning: 'iirest' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/app/packmol.f90:52:42: 52 | integer :: i, iline, iiatom, iat, iirest, iratcount, ival | ^ note: 'iirest' was declared here /build/reproducible-path/packmol-21.1.0/src/gencan.f:3339:72: 3339 | + beta ** 2 * dnorm2 | ^ Warning: 'alpha' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/src/gencan.f:3221:31: 3221 | double precision aa,alpha,amax,amax1,amax1n,amaxn,amax2,amax2n, | ^ note: 'alpha' was declared here /build/reproducible-path/packmol-21.1.0/src/gencan.f:3480:72: 3480 | amax = min( amax1 , amax2 ) | ^ Warning: 'amax1' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/src/gencan.f:3221:42: 3221 | double precision aa,alpha,amax,amax1,amax1n,amaxn,amax2,amax2n, | ^ note: 'amax1' was declared here /build/reproducible-path/packmol-21.1.0/src/gencan.f:3481:72: 3481 | amaxn = max( amax1n, amax2n ) | ^ Warning: 'amax1n' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/src/gencan.f:3221:49: 3221 | double precision aa,alpha,amax,amax1,amax1n,amaxn,amax2,amax2n, | ^ note: 'amax1n' was declared here /build/reproducible-path/packmol-21.1.0/src/gencan.f:3339:72: 3339 | + beta ** 2 * dnorm2 | ^ Warning: 'dnorm2' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/src/gencan.f:3222:67: 3222 | + amax2nx,amax2x,bb,bestprog,beta,cc,currprog,dd,dnorm2,dtr, | ^ note: 'dnorm2' was declared here /build/reproducible-path/packmol-21.1.0/src/gencan.f:3339:72: 3339 | + beta ** 2 * dnorm2 | ^ Warning: 'dtr' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/src/gencan.f:3222:71: 3222 | + amax2nx,amax2x,bb,bestprog,beta,cc,currprog,dd,dnorm2,dtr, | ^ note: 'dtr' was declared here /build/reproducible-path/packmol-21.1.0/src/gencan.f:3339:72: 3339 | + beta ** 2 * dnorm2 | ^ Warning: 'dtw' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/src/gencan.f:3223:21: 3223 | + dts,dtw,gnorm2,gts,norm2s,q,qamax,qamaxn,qprev,rnorm2, | ^ note: 'dtw' was declared here /build/reproducible-path/packmol-21.1.0/src/gencan.f:3332:72: 3332 | beta = rnorm2 / rnorm2prev | ^ Warning: 'rnorm2prev' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/src/gencan.f:3224:24: 3224 | + rnorm2prev,snorm2,snorm2prev | ^ note: 'rnorm2prev' was declared here /build/reproducible-path/packmol-21.1.0/src/gencan.f:3629:72: 3629 | rbdind = rbdposaind | ^ Warning: 'rbdposaind' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/src/gencan.f:3220:56: 3220 | integer i,itnqmp,rbdnegaind,rbdnegatype,rbdposaind,rbdposatype | ^ note: 'rbdposaind' was declared here /build/reproducible-path/packmol-21.1.0/src/gencan.f:3636:14: 3636 | if ( rbdtype .eq. 1 ) then | ^ Warning: 'rbdposatype' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/src/gencan.f:3220:68: 3220 | integer i,itnqmp,rbdnegaind,rbdnegatype,rbdposaind,rbdposatype | ^ note: 'rbdposatype' was declared here /build/reproducible-path/packmol-21.1.0/src/gencan.f:2128:72: 2128 | delta = max( delmin, 10.0d0 * sqrt( sts ) ) | ^ Warning: 'sts' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/src/gencan.f:1677:37: 1677 | + kappa,lamspg,ometa2,sts,sty,xnorm | ^ note: 'sts' was declared here /build/reproducible-path/packmol-21.1.0/src/gencan.f:2300:35: 2300 | if ( iter .eq. 1 .or. sty .le. 0.0d0 ) then | ^ Warning: 'sty' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.0/src/gencan.f:1677:41: 1677 | + kappa,lamspg,ometa2,sts,sty,xnorm | ^ note: 'sty' was declared here [100%] Linking Fortran executable packmol /usr/bin/cmake -E cmake_link_script CMakeFiles/packmol.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/packmol.dir/link.d -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.0=. -fstack-protector-strong -fstack-clash-protection -fcf-protection CMakeFiles/packmol.dir/src/exit_codes.f90.o CMakeFiles/packmol.dir/src/cenmass.f90.o CMakeFiles/packmol.dir/src/gencan.f.o CMakeFiles/packmol.dir/src/gencan_ieee_signal_routines.f90.o CMakeFiles/packmol.dir/src/pgencan.f90.o CMakeFiles/packmol.dir/src/initial.f90.o CMakeFiles/packmol.dir/src/title.f90.o CMakeFiles/packmol.dir/src/setsizes.f90.o CMakeFiles/packmol.dir/src/getinp.f90.o CMakeFiles/packmol.dir/src/strlength.f90.o CMakeFiles/packmol.dir/src/output.f90.o CMakeFiles/packmol.dir/src/cli_parser.f90.o CMakeFiles/packmol.dir/src/checkpoint.f90.o CMakeFiles/packmol.dir/src/writesuccess.f90.o CMakeFiles/packmol.dir/src/fparc.f90.o CMakeFiles/packmol.dir/src/gparc.f90.o CMakeFiles/packmol.dir/src/gwalls.f90.o CMakeFiles/packmol.dir/src/comprest.f90.o CMakeFiles/packmol.dir/src/comparegrad.f90.o CMakeFiles/packmol.dir/app/packmol.f90.o CMakeFiles/packmol.dir/src/polartocart.f90.o CMakeFiles/packmol.dir/src/resetcells.f90.o CMakeFiles/packmol.dir/src/tobar.f90.o CMakeFiles/packmol.dir/src/cell_indexing.f90.o CMakeFiles/packmol.dir/src/restmol.f90.o CMakeFiles/packmol.dir/src/swaptype.f90.o CMakeFiles/packmol.dir/src/swaptypemod.f90.o CMakeFiles/packmol.dir/src/ahestetic.f90.o CMakeFiles/packmol.dir/src/heuristics.f90.o CMakeFiles/packmol.dir/src/flashsort.f90.o CMakeFiles/packmol.dir/src/jacobi.f90.o CMakeFiles/packmol.dir/src/random.f90.o CMakeFiles/packmol.dir/src/sizes.f90.o CMakeFiles/packmol.dir/src/pbc.f90.o CMakeFiles/packmol.dir/src/usegencan.f90.o CMakeFiles/packmol.dir/src/compute_data.f90.o CMakeFiles/packmol.dir/src/flashmod.f90.o CMakeFiles/packmol.dir/src/computef.f90.o CMakeFiles/packmol.dir/src/computeg.f90.o CMakeFiles/packmol.dir/src/input.f90.o -o packmol make[3]: Leaving directory '/build/reproducible-path/packmol-21.1.0/obj-x86_64-linux-gnu' [100%] Built target packmol make[2]: Leaving directory '/build/reproducible-path/packmol-21.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/packmol-21.1.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/packmol-21.1.0/obj-x86_64-linux-gnu' dh_auto_test -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/packmol/ -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/reproducible-path/packmol-21.1.0/debian/packmol AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/packmol-21.1.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/packmol-21.1.0 -B/build/reproducible-path/packmol-21.1.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/packmol-21.1.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/packmol-21.1.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/packmol-21.1.0/debian/packmol/usr/bin/packmol make[1]: Leaving directory '/build/reproducible-path/packmol-21.1.0/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/packmol/usr/bin/packmol was not linked against libgcc_s.so.1 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'packmol' in '../packmol_21.1.0-1_amd64.deb'. dpkg-deb: building package 'packmol-dbgsym' in '../packmol-dbgsym_21.1.0-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../packmol_21.1.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../packmol_21.1.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3829081 and its subdirectories I: Current time: Mon Sep 28 17:28:40 -12 2026 I: pbuilder-time-stamp: 1790659720 Tue Aug 26 23:05:41 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Tue Aug 26 23:05:41 UTC 2025 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Tue Aug 26 23:06:48 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. Tue Aug 26 23:06:49 UTC 2025 I: packmol_21.1.0-1_amd64.changes: Format: 1.8 Date: Thu, 21 Aug 2025 14:58:35 +0200 Source: packmol Binary: packmol packmol-dbgsym Architecture: amd64 Version: 1:21.1.0-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Drew Parsons Description: packmol - Initial configurations for Molecular Dynamics Simulations Changes: packmol (1:21.1.0-1) unstable; urgency=medium . * New upstream release - applies all debian patches Checksums-Sha1: 0dcc7ddb76665f92822bbb3444a6af7374be8593 131960 packmol-dbgsym_21.1.0-1_amd64.deb 8583f15d0994b991262486260709b2c0ff5b3544 6088 packmol_21.1.0-1_amd64.buildinfo 7c23b7a8d9d9172a48745f240ad01bb19b978bdb 119940 packmol_21.1.0-1_amd64.deb Checksums-Sha256: 6f620a43853cc5fa5f41375491344646f79840e230953ae93b2f4b124afb1db9 131960 packmol-dbgsym_21.1.0-1_amd64.deb 29218962fcb56d1fe9f14c527f2c61e6b3022d2c9301fb6c457a55e000713f5a 6088 packmol_21.1.0-1_amd64.buildinfo 6f9a2d089f22b6575b441dab67be31ce28d042c5c427af775279db2172016c91 119940 packmol_21.1.0-1_amd64.deb Files: 2f4b78fa83c00bcc21dcc7fc4741dfb9 131960 debug optional packmol-dbgsym_21.1.0-1_amd64.deb 7bd0b0167917bd525d73b5d3671e65ec 6088 science optional packmol_21.1.0-1_amd64.buildinfo 9f04a54d3baa3c1a34e9eee52d8a7ce0 119940 science optional packmol_21.1.0-1_amd64.deb Tue Aug 26 23:06:49 UTC 2025 I: diffoscope 305 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_36-78237.service; invocation ID: ff96e36932d34cca84beb54dc890d9cf # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.tRykueMw/packmol_21.1.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.tRykueMw/packmol_21.1.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.tRykueMw/packmol_21.1.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.tRykueMw/b1/packmol_21.1.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.tRykueMw/b2/packmol_21.1.0-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 197ms CPU time consumed: 172ms Memory peak: 17.6M (swap: 0B) Tue Aug 26 23:06:51 UTC 2025 I: diffoscope 305 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 26 23:06:51 UTC 2025 I: packmol from forky built successfully and reproducibly on amd64. Tue Aug 26 23:06:52 UTC 2025 I: Removing signed packmol_21.1.0-1_amd64.buildinfo.asc files: removed './b1/packmol_21.1.0-1_amd64.buildinfo.asc' removed './b2/packmol_21.1.0-1_amd64.buildinfo.asc'