Mon Nov 3 07:12:49 UTC 2025 I: starting to build pbcopper/forky/amd64 on jenkins on '2025-11-03 07:12' Mon Nov 3 07:12:49 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_31/62598/console.log Mon Nov 3 07:12:50 UTC 2025 I: Downloading source for forky/pbcopper=2.3.0+dfsg-4 --2025-11-03 07:12:50-- http://deb.debian.org/debian/pool/main/p/pbcopper/pbcopper_2.3.0%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2319 (2.3K) [text/prs.lines.tag] Saving to: ‘pbcopper_2.3.0+dfsg-4.dsc’ 0K .. 100% 211M=0s 2025-11-03 07:12:50 (211 MB/s) - ‘pbcopper_2.3.0+dfsg-4.dsc’ saved [2319/2319] Mon Nov 3 07:12:50 UTC 2025 I: pbcopper_2.3.0+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbcopper Binary: libpbcopper2.3.0, libpbcopper-dev Architecture: any Version: 2.3.0+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/pbcopper Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/pbcopper Vcs-Git: https://salsa.debian.org/med-team/pbcopper.git Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, d-shlibs, meson, cmake, pkgconf, libboost-dev, libboost-iostreams-dev, googletest, libgtest-dev, libsimde-dev Package-List: libpbcopper-dev deb libdevel optional arch=any libpbcopper2.3.0 deb libs optional arch=any Checksums-Sha1: 7f03fb0c39532e685be6893190fbd1556a45eb0b 736204 pbcopper_2.3.0+dfsg.orig.tar.xz d8396cf912113ff32d9a23fbb9ad247f3482b876 8208 pbcopper_2.3.0+dfsg-4.debian.tar.xz Checksums-Sha256: 778862e58f051159b8b35bdae7d3361011a1cbc674423e6a23992b094f76f162 736204 pbcopper_2.3.0+dfsg.orig.tar.xz 92e8cb13f891902a6d9eb839879fbc4b89e826f2e585e2f0648a9c39ba1415b7 8208 pbcopper_2.3.0+dfsg-4.debian.tar.xz Files: 2dad359fad146c0886f57c921055a49b 736204 pbcopper_2.3.0+dfsg.orig.tar.xz 7c73a220b6ad354550f5d9012cb0f6c3 8208 pbcopper_2.3.0+dfsg-4.debian.tar.xz Dgit: 1f39e68bc333d1946548a0f3c9b673593dccd59a debian archive/debian/2.3.0+dfsg-4 https://git.dgit.debian.org/pbcopper -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmji460UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrJnQ/9HHn7XmbxHMx1+ejZU4+ZOG2OMuLE YXsk8b5RC9ffUkKPEszblpR2Kdo335VsVa+mNv2z7l2IeU2YvLtNOBAEVkmlvruJ bMu+wuY9ZeAb8Qgnhwk0gP5OgoBMUH2JpFUVvvDaHiTw947cHIkwJRLFFLreXa5L rFnutpVINMIhOstrNFPfFaSJ6X4pYoYoDHHUic/PUASH2rlXw3/pkJAak2tBJ/o4 WiDwv7VUz0D8+r6+GAGq39nuUsdmnbZeFVtb29pKE4+2eVH8oO7oVoYSSFFm+mDe 85pXNzAyFq/S7XfIwa2ZDmvw/edBsljevUw5nSmiRU8q2TQk7lOT0fDFULPrIr5m GpBJII4eR2hfDIYrfpuvtgvdDGjeBDkSXHPJ8t4wSM0Dh/J3FnMHawOn3exHoFe6 RNDJxCINgAj/OvWlTLwIcnRnaCdQMspX5qymyQL8Q5D4oti87eANBdCAd+po6d7l nQtcMpLtsDFjtxA+4DV+F9MiewvBnnb2GXpfk1Ux2s/4NxvK2R5MCcOhKqvLDdY2 55Yt1HTmbmqMwnwnOeqIczeqcg3YuWH7ON0hydGF8VcQrAasRm7TE2GZNphlmIuO MNEZC4MAjYuXqoLUDmObeONCu9Ret9ZnLc0tkIPGjoUvcbIn/c5fUkEaPZZswOpW jAPNm8LSdczElF4= =vCmS -----END PGP SIGNATURE----- Mon Nov 3 07:12:50 UTC 2025 I: Checking whether the package is not for us Mon Nov 3 07:12:50 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Mon Nov 3 07:12:50 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Mon Nov 3 07:18:04 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 2 19:12:51 -12 2025 I: pbuilder-time-stamp: 1762153971 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbcopper_2.3.0+dfsg-4.dsc] I: copying [./pbcopper_2.3.0+dfsg.orig.tar.xz] I: copying [./pbcopper_2.3.0+dfsg-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pbcopper_2.3.0+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting pbcopper in pbcopper-2.3.0+dfsg dpkg-source: info: unpacking pbcopper_2.3.0+dfsg.orig.tar.xz dpkg-source: info: unpacking pbcopper_2.3.0+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying simde.patch dpkg-source: info: applying static+shared_lib.patch dpkg-source: info: applying skip_test_Parallel_FireAndForget.patch dpkg-source: info: applying gcc-13 dpkg-source: info: applying gcc-15 I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/286032/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='cabd5adfe82e4ecb9e26901cc8383c25' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='286032' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vIYUs0wI/pbuilderrc_SkFC --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vIYUs0wI/b1 --logfile b1/build.log pbcopper_2.3.0+dfsg-4.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/286032/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, d-shlibs, meson, cmake, pkgconf, libboost-dev, libboost-iostreams-dev, googletest, libgtest-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu-dev{a} libicu76{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libstdc++-14-dev{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 106 newly installed, 0 to remove and 0 not upgraded. Need to get 79.4 MB of archives. After unpacking 467 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 architecture-properties amd64 0.2.6 [2336 B] Get: 28 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 43 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0~rc3-1 [409 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 63 http://deb.debian.org/debian forky/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 70 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-10 [52.4 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 googletest all 1.17.0-1 [522 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libgcc-14-dev amd64 14.3.0-10 [2670 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libstdc++-14-dev amd64 14.3.0-10 [2674 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libboost1.83-dev amd64 1.83.0-5 [10.6 MB] Get: 83 http://deb.debian.org/debian forky/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 84 http://deb.debian.org/debian forky/main amd64 libboost-regex1.83.0 amd64 1.83.0-5 [336 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 86 http://deb.debian.org/debian forky/main amd64 libboost-regex1.83-dev amd64 1.83.0-5 [352 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-5 [265 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 89 http://deb.debian.org/debian forky/main amd64 libgtest-dev amd64 1.17.0-1 [259 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 ninja-build amd64 1.12.1-1 [142 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 99 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 meson all 1.9.1-1 [665 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Fetched 79.4 MB in 18s (4367 kB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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I: Building the package I: Running cd /build/reproducible-path/pbcopper-2.3.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbcopper_2.3.0+dfsg-4_source.changes dpkg-buildpackage: info: source package pbcopper dpkg-buildpackage: info: source version 2.3.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --builddirectory=build dh_auto_clean -O--builddirectory=build dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build dh_auto_configure -O--builddirectory=build cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Dpython.bytecompile=-1 The Meson build system Version: 1.9.1 Source dir: /build/reproducible-path/pbcopper-2.3.0+dfsg Build dir: /build/reproducible-path/pbcopper-2.3.0+dfsg/build Build type: native build ../meson.build:2: WARNING: Keyword argument "default_options" defined multiple times. WARNING: This will be an error in Meson 2.0. Project name: pbcopper Project version: 2.3.0 C compiler for the host machine: cc (gcc 15.2.0 "cc (Debian 15.2.0-7) 15.2.0") C linker for the host machine: cc ld.bfd 2.45 C++ compiler for the host machine: c++ (gcc 15.2.0 "c++ (Debian 15.2.0-7) 15.2.0") C++ linker for the host machine: c++ ld.bfd 2.45 Host machine cpu family: x86_64 Host machine cpu: x86_64 Compiler for C++ supports arguments -Wduplicated-cond: YES Compiler for C++ supports arguments -Wduplicated-branches: YES Compiler for C++ supports arguments -Wlogical-op: YES Compiler for C++ supports arguments -Wrestrict: YES Compiler for C++ supports arguments -Wdouble-promotion: YES Compiler for C++ supports arguments -Wshadow: YES Compiler for C++ supports arguments -Wformat=1: YES Compiler for C supports arguments -Wc++-compat: YES Compiler for C supports arguments -Wno-unused-parameter: YES Compiler for C supports arguments -Wno-unused-variable: YES Compiler for C supports arguments -Wno-sign-compare: YES Compiler for C supports arguments -Wno-unused-but-set-variable: YES Compiler for C supports arguments -msse4.1: YES Run-time dependency threads found: YES Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency Boost found: YES 1.83.0 (/usr) Configuring PbcopperVersion.cpp using configuration Configuring LibraryVersion.h using configuration Program tools/check-formatting found: YES (/build/reproducible-path/pbcopper-2.3.0+dfsg/tools/check-formatting) Run-time dependency GTest found: YES 1.17.0 Configuring PbcopperTestData.h using configuration Build targets in project: 5 pbcopper 2.3.0 User defined options buildtype : plain libdir : lib/x86_64-linux-gnu localstatedir : /var prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja dh_auto_build -O--builddirectory=build cd build && LC_ALL=C.UTF-8 ninja -j40 -v [1/182] /usr/bin/meson --internal vcstagger ../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 2.3.0 /build/reproducible-path/pbcopper-2.3.0+dfsg/src/utility @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [2/182] /usr/bin/meson --internal vcstagger ../src/LibraryGitHash.h.in src/LibraryGitHash.h 2.3.0 /build/reproducible-path/pbcopper-2.3.0+dfsg/src @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [3/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -MF 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-D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o -MF tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o.d -o tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o -c ../tests/src/container/test_CapacityPointer.cpp [7/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o -MF tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o.d -o tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o -c ../tests/src/align/test_EdlibAlign.cpp [8/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time 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-std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o -c ../src/data/QualityValue.cpp [54/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o -c ../src/data/MovieName.cpp [55/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o -c ../src/cli2/OptionValue.cpp [56/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o -c ../tests/src/cli2/test_MultiToolInterfaceHelpPrinter.cpp [57/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o -c ../src/cli2/HelpMetrics.cpp [58/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o -c ../src/data/Clipping.cpp [59/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o -c ../src/data/Frames.cpp [60/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o -c ../src/data/Strand.cpp [61/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o -MF src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o.d -o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o -c ../src/math/FishersExact.cpp [62/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o -c ../src/data/SNR.cpp [63/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -c ../tests/src/algorithm/test_LSHIndex.cpp In file included from /usr/include/string.h:548, from /usr/include/c++/15/cstring:48, from ../include/pbcopper/third-party/robin_hood/robin_hood.h:43, from ../include/pbcopper/container/RHUnordered.h:6, from ../include/pbcopper/container/Unordered.h:6, from ../include/pbcopper/algorithm/KMerIndex.h:6, from ../tests/src/algorithm/test_LSHIndex.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘KeyT PacBio::Algorithm::LSHIndex::hashMemory(const T&, int64_t) const [with T = long unsigned int; KeyT = long unsigned int; IdT = unsigned int]’ at ../include/pbcopper/algorithm/LSHIndex.h:630:24, inlined from ‘KeyT PacBio::Algorithm::LSHIndex::hashIndex(const Sketch&, int64_t, int64_t) const [with Sketch = std::vector >; KeyT = long unsigned int; IdT = unsigned int]’ at ../include/pbcopper/algorithm/LSHIndex.h:678:30: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: ‘void* __builtin___memcpy_chk(void*, const void*, long unsigned int, long unsigned int)’ writing 8 or more bytes into a region of size 4 overflows the destination [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [64/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o -MF src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o.d -o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o -c ../src/cli2/MultiToolInterfaceHelpPrinter.cpp [65/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o -c ../src/data/Cigar.cpp [66/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o -MF src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o.d -o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o -c ../src/logging/LogConfig.cpp [67/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o -c ../tests/src/algorithm/test_Heteroduplex.cpp [68/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o -c ../src/data/RSMovieName.cpp [69/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o -MF src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o.d -o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o -c ../src/logging/LogLevel.cpp [70/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o -MF src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o.d -o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o -c ../src/data/ReadId.cpp [71/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 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-Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o -MF src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o.d -o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o -c ../src/pbmer/Dbg.cpp [138/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong 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tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o -c ../tests/src/data/test_RSReadName.cpp [154/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -c ../tests/src/utility/test_Stopwatch.cpp [155/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -c ../tests/src/utility/test_FileUtils.cpp [156/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o -MF src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o.d -o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o -c ../src/reports/ReportPrinter.cpp [157/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -c ../tests/src/utility/test_Alarm.cpp [158/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -c ../tests/src/utility/test_Shuffle.cpp [159/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_ReadName.cpp.o -MF tests/pbcopper_test.p/src_data_test_ReadName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_ReadName.cpp.o -c ../tests/src/data/test_ReadName.cpp [160/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o -MF src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o.d -o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o -c ../src/poa/PoaGraphTraversals.cpp [161/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -c ../tests/src/parallel/test_FireAndForget.cpp [162/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -MF tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -c ../tests/src/utility/test_TimeReporter.cpp [163/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -c ../tests/src/pbmer/test_KFGraph.cpp [164/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_logging_test_Logging.cpp.o -MF tests/pbcopper_test.p/src_logging_test_Logging.cpp.o.d -o tests/pbcopper_test.p/src_logging_test_Logging.cpp.o -c ../tests/src/logging/test_Logging.cpp [165/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o -MF src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o.d -o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o -c ../src/utility/Alarm.cpp [166/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -c ../tests/src/parallel/test_FireAndForgetIndexed.cpp ../tests/src/parallel/test_FireAndForgetIndexed.cpp: In member function ‘virtual void Parallel_FireAndForgetIndexed_strings_Test::TestBody()’: ../tests/src/parallel/test_FireAndForgetIndexed.cpp:15:25: warning: unused variable ‘numElements’ [-Wunused-variable] 15 | static const size_t numElements = 10000; | ^~~~~~~~~~~ ../tests/src/parallel/test_FireAndForgetIndexed.cpp:28:10: warning: variable ‘Submit’ set but not used [-Wunused-but-set-variable] 28 | auto Submit = [&vec](size_t index, size_t data) { vec[index] += data; }; | ^~~~~~ [167/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -c ../tests/src/utility/test_MoveAppend.cpp [168/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -MF tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -c ../tests/src/poa/test_SparsePoa.cpp [169/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -c ../tests/src/pbmer/test_DnaBit.cpp [170/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -MF tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -c ../tests/src/poa/test_PoaConsensus.cpp [171/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -MF tests/pbcopper_test.p/src_qgram_test_Index.cpp.o.d -o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -c ../tests/src/qgram/test_Index.cpp [172/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -c ../tests/src/pbmer/test_Dbg.cpp [173/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -c ../tests/src/parallel/test_WorkQueue.cpp [174/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -c ../tests/src/utility/test_StringUtils.cpp [175/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -MF tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -c ../tests/src/utility/test_PartitionElements.cpp [176/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -c ../tests/src/utility/test_MoveInsert.cpp [177/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_reports_test_Report.cpp.o -MF tests/pbcopper_test.p/src_reports_test_Report.cpp.o.d -o tests/pbcopper_test.p/src_reports_test_Report.cpp.o -c ../tests/src/reports/test_Report.cpp [178/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o -MF src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o.d -o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o -c ../src/poa/PoaGraphImpl.cpp [179/182] rm -f src/libpbcopper.a && gcc-ar csrD src/libpbcopper.a src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o [180/182] c++ -o src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,-soname,libpbcopper.so.2.3.0 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread [181/182] /usr/bin/meson --internal symbolextractor /build/reproducible-path/pbcopper-2.3.0+dfsg/build src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0.p/libpbcopper.so.2.3.0.symbols [182/182] c++ -o tests/pbcopper_test tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o tests/pbcopper_test.p/src_align_test_Alignment.cpp.o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o tests/pbcopper_test.p/src_align_test_Seeds.cpp.o tests/pbcopper_test.p/src_container_test_BitContainer.cpp.o tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o tests/pbcopper_test.p/src_container_test_BitmaskContainer.cpp.o tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o tests/pbcopper_test.p/src_container_test_Contains.cpp.o tests/pbcopper_test.p/src_container_test_DNAString.cpp.o tests/pbcopper_test.p/src_container_test_Unordered.cpp.o tests/pbcopper_test.p/src_container_test_RHUnordered.cpp.o tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o tests/pbcopper_test.p/src_cli2_test_Interface.cpp.o tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_Results.cpp.o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o tests/pbcopper_test.p/src_data_test_Cigar.cpp.o tests/pbcopper_test.p/src_data_test_Frames.cpp.o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o tests/pbcopper_test.p/src_data_test_Interval.cpp.o tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o tests/pbcopper_test.p/src_data_test_MovieName.cpp.o tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o tests/pbcopper_test.p/src_data_test_Read.cpp.o tests/pbcopper_test.p/src_data_test_ReadName.cpp.o tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o tests/pbcopper_test.p/src_data_test_SNR.cpp.o tests/pbcopper_test.p/src_json_test_JSON.cpp.o tests/pbcopper_test.p/src_library_test_Library.cpp.o tests/pbcopper_test.p/src_logging_test_Logging.cpp.o tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o tests/pbcopper_test.p/src_reports_test_Report.cpp.o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 '-Wl,-rpath,$ORIGIN/../src' -Wl,--start-group src/libpbcopper.so.2.3.0 /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a -Wl,--end-group -pthread debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' cd build && meson test --no-rebuild --print-errorlogs 1/2 pbcopper formatting check OK 0.01s 2/2 pbcopper gtest unittests OK 8.90s Ok: 2 Fail: 0 Full log written to /build/reproducible-path/pbcopper-2.3.0+dfsg/build/meson-logs/testlog.txt make[1]: Leaving directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install -O--builddirectory=build cd build && DESTDIR=/build/reproducible-path/pbcopper-2.3.0\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install [1/9] Generating src/LibraryGitHash.h with a custom command [2/8] Generating src/utility/PbcopperGitHash.cpp with a custom command [2/3] Installing files Installing src/libpbcopper.so.2.3.0 to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu Installing src/libpbcopper.a to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/LibraryInfo.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/PbcopperConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/Heteroduplex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/KMerIndex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/LSHIndex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/internal/HeteroduplexUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/AffineAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/AlignConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/BandedChainAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/ChainSeeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/ChainSeedsConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/EdlibAlign.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/FindSeeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/GlobalLocalAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/LinearAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/LocalAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/PairwiseAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/Seed.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/Seeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/SparseAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/internal/BCAlignBlocks.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/internal/BCAlignImpl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/cssw/ssw.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/cssw Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/cssw/ssw_cpp.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/cssw Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/CLI.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Interface.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/MultiToolInterface.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Option.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/OptionValue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/OptionGroup.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/PositionalArgument.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Result.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Results.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/ResultsHandler.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Tool.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/VersionPrinterCallback.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/BuiltinOptions.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/CommandLineParser.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/HelpMetrics.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/HiddenOptionMode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceHelpPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceHelpPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/OptionData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/OptionTranslator.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentTranslator.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/VersionPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitContainer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitConversion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitmaskContainer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/CapacityPointer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/Contains.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/DNAString.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/RHUnordered.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/Unordered.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cuda/AsciiConversion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cuda Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cuda/Cuda.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cuda Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/dagcon/Alignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/dagcon Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/dagcon/AlignmentGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/dagcon Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Accuracy.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/CCSTag.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Cigar.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/CigarOperation.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Clipping.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/FrameCodec.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/FrameEncoders.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Frames.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/GenomicInterval.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Interval.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/IntervalTree.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/LocalContextFlags.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/MappedRead.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/MovieName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Orientation.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Position.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/QualityValue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/QualityValues.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Read.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/ReadId.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/ReadName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/RSMovieName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/RSReadName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/SNR.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Strand.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Zmw.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ClippingImpl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/MovieName-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/RSMovieName-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/json/JSON.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/json Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/library/Bundle.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/library Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/library/Info.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/library Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/Logging.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogField.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogLevel.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogMessage.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/math/ConfusionMatrix.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/math Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/math/FishersExact.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/math Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/FireAndForget.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/FireAndForgetIndexed.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/ThreadCount.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/WorkQueue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Bubble.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Dbg.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/DbgNode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/DnaBit.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Kmer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Mers.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Parser.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/SparseHaplotype.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/KFGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/KFNode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/PoaConsensus.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/PoaGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/RangeFinder.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/SparsePoa.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/reports/Report.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/reports Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/Index.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/IndexHit.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/IndexHits.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/internal/Hashing-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/internal/Index-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/edlib.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/htslib/kfunc.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/htslib Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/kxsort/kxsort.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/kxsort Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/ksw2/kalloc.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/ksw2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/ksw2/ksw2.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/ksw2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/rigtorp/MPMCQueue.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/rigtorp Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/rigtorp/SPSCQueue.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/rigtorp Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/robin_hood/robin_hood.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/robin_hood Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/sparc/sparc.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/sparc Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Alarm.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Base64.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Deleters.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/FastMod.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/FileUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Intrinsics.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MemoryConsumption.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MinMax.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MoveAppend.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MoveInsert.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/OStreamRedirect.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Overloaded.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/PartitionElements.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/PbcopperVersion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Random.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/SafeSubtract.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/SequenceUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Shuffle.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Ssize.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Stopwatch.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/StringUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/TimeReporter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Unused.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/internal/FileUtils-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/internal/Stopwatch-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/third-party/json.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/build/meson-private/pbcopper.pc to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig Installing symlink pointing to libpbcopper.so.2.3.0 to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libpbcopper.so debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libpbcopper2.3.0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libpbcopper.a debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libpbcopper.so debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libpbcopper.so.2.3.0 debian/libpbcopper2.3.0/usr/lib/x86_64-linux-gnu PKGDEV=libpbcopper-dev PKGSHL=libpbcopper2.3.0 install -d -m 755 debian/libpbcopper-dev/usr mv debian/tmp/usr/include debian/libpbcopper-dev/usr install -d -m 755 debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libpbcopper-dev/usr/lib/x86_64-linux-gnu/pkgconfig make[1]: Leaving directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -a -O--builddirectory=build dh_strip -a -O--builddirectory=build dh_makeshlibs -a -O--builddirectory=build dh_shlibdeps -a -O--builddirectory=build dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dpkg-gencontrol: warning: Depends field of package libpbcopper-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'libpbcopper2.3.0-dbgsym' in '../libpbcopper2.3.0-dbgsym_2.3.0+dfsg-4_amd64.deb'. dpkg-deb: building package 'libpbcopper2.3.0' in '../libpbcopper2.3.0_2.3.0+dfsg-4_amd64.deb'. dpkg-deb: building package 'libpbcopper-dev' in '../libpbcopper-dev_2.3.0+dfsg-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pbcopper_2.3.0+dfsg-4_amd64.buildinfo dpkg-genchanges --build=binary -O../pbcopper_2.3.0+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/286032 and its subdirectories I: Current time: Sun Nov 2 19:18:03 -12 2025 I: pbuilder-time-stamp: 1762154283 Mon Nov 3 07:18:04 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Mon Nov 3 07:18:04 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Mon Nov 3 07:20:22 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Mon Nov 3 07:20:23 UTC 2025 I: pbcopper_2.3.0+dfsg-4_amd64.changes: Format: 1.8 Date: Sun, 05 Oct 2025 23:30:23 +0200 Source: pbcopper Binary: libpbcopper-dev libpbcopper2.3.0 libpbcopper2.3.0-dbgsym Architecture: amd64 Version: 2.3.0+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libpbcopper-dev - data structures, algorithms, and utilities for C++ applications - libpbcopper2.3.0 - data structures, algorithms, and utilities for C++ applications Closes: 1117413 Changes: pbcopper (2.3.0+dfsg-4) unstable; urgency=medium . * Team upload. * d/control: build depends on libboost-iostreams-dev. (Closes: #1117413) Checksums-Sha1: 004304fc6468ba4981d74b84ff3562b1237b6eae 1053480 libpbcopper-dev_2.3.0+dfsg-4_amd64.deb 6564c329c870a82deae9f9bd45145cff8f1300e7 13638596 libpbcopper2.3.0-dbgsym_2.3.0+dfsg-4_amd64.deb 8c0958c4387b198aeacd6940245329d6eac8d129 716868 libpbcopper2.3.0_2.3.0+dfsg-4_amd64.deb f9bc36590884c741ace8bd660fe5fb22636a2966 7978 pbcopper_2.3.0+dfsg-4_amd64.buildinfo Checksums-Sha256: 524bcb57188afbab9ce50454920727e11cca5c37c1d48b559c724e7d02f08e7f 1053480 libpbcopper-dev_2.3.0+dfsg-4_amd64.deb d8e30e44933756d1fb998f8c8ef0d5d33f7e9347f2028561b259bbff43761947 13638596 libpbcopper2.3.0-dbgsym_2.3.0+dfsg-4_amd64.deb 5bb1953c7abc375a9dcbcd02bd2bad4812ca2acde91820f75c960b809c333c01 716868 libpbcopper2.3.0_2.3.0+dfsg-4_amd64.deb 2dd53fc6e86c1812cc76a327f87fbc70ed407ba5d3f7aa2d340f2160b184996a 7978 pbcopper_2.3.0+dfsg-4_amd64.buildinfo Files: aa8e4b8dd5663deed3f50f18e4d89ec7 1053480 libdevel optional libpbcopper-dev_2.3.0+dfsg-4_amd64.deb 1874e5e3b70853e9810a5a8f31ef7055 13638596 debug optional libpbcopper2.3.0-dbgsym_2.3.0+dfsg-4_amd64.deb 0d7aadaad1d046f04b0148ad2c8a56f1 716868 libs optional libpbcopper2.3.0_2.3.0+dfsg-4_amd64.deb 41999bbe20be9b043c86e29a38e19100 7978 science optional pbcopper_2.3.0+dfsg-4_amd64.buildinfo Mon Nov 3 07:20:23 UTC 2025 I: diffoscope 307 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_31-62598.service; invocation ID: cbec655d253c441b8730b85c06be4e42 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.vIYUs0wI/pbcopper_2.3.0+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.vIYUs0wI/pbcopper_2.3.0+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.vIYUs0wI/pbcopper_2.3.0+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.vIYUs0wI/b1/pbcopper_2.3.0+dfsg-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.vIYUs0wI/b2/pbcopper_2.3.0+dfsg-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 212ms CPU time consumed: 181ms Memory peak: 18.9M (swap: 0B) Mon Nov 3 07:26:27 UTC 2025 I: diffoscope 307 found no differences in the changes files, and a .buildinfo file also exists. Mon Nov 3 07:26:27 UTC 2025 I: pbcopper from forky built successfully and reproducibly on amd64. Mon Nov 3 07:26:28 UTC 2025 I: Removing signed pbcopper_2.3.0+dfsg-4_amd64.buildinfo.asc files: removed './b1/pbcopper_2.3.0+dfsg-4_amd64.buildinfo.asc' removed './b2/pbcopper_2.3.0+dfsg-4_amd64.buildinfo.asc'