Tue Sep 2 13:05:18 UTC 2025 I: starting to build pizzly/forky/amd64 on jenkins on '2025-09-02 13:05' Tue Sep 2 13:05:18 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_11/66352/console.log Tue Sep 2 13:05:18 UTC 2025 I: Downloading source for forky/pizzly=0.37.3+ds-9 --2025-09-02 13:05:18-- http://deb.debian.org/debian/pool/main/p/pizzly/pizzly_0.37.3%2bds-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2023 (2.0K) [text/prs.lines.tag] Saving to: ‘pizzly_0.37.3+ds-9.dsc’ 0K . 100% 262M=0s 2025-09-02 13:05:18 (262 MB/s) - ‘pizzly_0.37.3+ds-9.dsc’ saved [2023/2023] Tue Sep 2 13:05:18 UTC 2025 I: pizzly_0.37.3+ds-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pizzly Binary: pizzly Architecture: any Version: 0.37.3+ds-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/pmelsted/pizzly Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/pizzly Vcs-Git: https://salsa.debian.org/med-team/pizzly.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev Package-List: pizzly deb science optional arch=any Checksums-Sha1: 3c134c7e66314d7c3fdb99d6f9aaa4347d12e713 262304 pizzly_0.37.3+ds.orig.tar.xz c0a79cea3c490eccfefb82c35a90de28a72a6c25 5308 pizzly_0.37.3+ds-9.debian.tar.xz Checksums-Sha256: 8dd0dfb08a9341d4eeb525679779d3afb641b198c88df646ffc7e72930039678 262304 pizzly_0.37.3+ds.orig.tar.xz 7dbcaf4d228a00de23bcd05ea43b829bb4736a3c87e83a346b766a14d7dd4141 5308 pizzly_0.37.3+ds-9.debian.tar.xz Files: cba5c09c8f5493378b068821029df3a5 262304 pizzly_0.37.3+ds.orig.tar.xz fdcd50bccd08aad5072daaa28b32a9d8 5308 pizzly_0.37.3+ds-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPSO9oRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFvqA/+MbaQm/vE2hajyraE2L0yrACvQubO82da UhNjI1Gd7Fv7vAo+luy+woCIiejZ4jSIf5abfEM1zIBjIqVUgXUH6XYumtWNLc3s feXtrLXDWP1Auv5OTY1VffqBjThfPV55JSMGc02/1/zVZ8jyZLlPWe2gnZGcZMl2 meTc+XTyuo3ekanyrVJCcGN6Vm2ppJ8nWiJFP9NVdnPfD8xK8eNYcbcOg4FKY7Ud 9jRrTxVFwo1JNEP4z2r7iIp52KMpw09DgNYkgagOMs7CPIzBssy1NF3UwLp8Qd7L cz/s6AZz0x1Ia75iitFPsN6WvodAL4/9C1du5rVrzDbSpziVYoDRm9ATy8IeD9B4 zn6bENzwZ+Mdg2eHrFnuwNaVD3tqMbMeaq8hTR32O/xGb9E+rHmD/kwbiOoqP/Kh obSf1Qd40MERzrHlbYqoIspZxDQkEpyGiBqIqXLTVGoeqBnYdw2uWCAPYm5HoEIz 2RyOsREB+bWW/gQPP7WgRtHQogMjJB0Uar5oELlNV9Iwnpi7jv5/lrqx6YC/gm+t k6ZSSLSyKBYTBDtQoDjt9VNLlZH+QC74ie2wtE6R1gDh6HuaZ5LMjS6FyQwR/X4K 7N35RxXXUAlF45AqAM3f8sfk/Xr21jY2LZCxRmC20uDdsV9Qmx29PHKVI6yIPVmu /x3bFXpik7Q= =aRRI -----END PGP SIGNATURE----- Tue Sep 2 13:05:18 UTC 2025 I: Checking whether the package is not for us Tue Sep 2 13:05:18 UTC 2025 I: Starting 1st build on remote node ionos1-amd64.debian.net. Tue Sep 2 13:05:18 UTC 2025 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Tue Sep 2 13:07:22 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Sep 2 01:05:20 -12 2025 I: pbuilder-time-stamp: 1756818320 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pizzly_0.37.3+ds-9.dsc] I: copying [./pizzly_0.37.3+ds.orig.tar.xz] I: copying [./pizzly_0.37.3+ds-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pizzly_0.37.3+ds-9.dsc: no acceptable signature found dpkg-source: info: extracting pizzly in pizzly-0.37.3+ds dpkg-source: info: unpacking pizzly_0.37.3+ds.orig.tar.xz dpkg-source: info: unpacking pizzly_0.37.3+ds-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying executable-not-elf-or-script.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1173293/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f031f2f4604d473297df08eae51f8354' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1173293' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.q9lFvryG/pbuilderrc_bMWI --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.q9lFvryG/b1 --logfile b1/build.log pizzly_0.37.3+ds-9.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1173293/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on kallisto; however: Package kallisto is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} kallisto{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 35.2 MB of archives. After unpacking 132 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 28 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.15.0-1 [392 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 49 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-4 [539 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.14.2-1 [19.8 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.14.2-1 [8768 B] Get: 55 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 help2man amd64 1.49.3 [198 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.15.0-1 [385 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 kallisto amd64 0.48.0+dfsg-4+b1 [286 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 35.2 MB in 1s (41.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../01-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../02-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../03-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../04-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../06-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../09-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../10-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../11-bsdextrautils_2.41.1-1_amd64.deb ... Unpacking bsdextrautils (2.41.1-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../12-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../13-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.19-8_amd64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pizzly-0.37.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pizzly_0.37.3+ds-9_source.changes dpkg-buildpackage: info: source package pizzly dpkg-buildpackage: info: source version 0.37.3+ds-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_auto_clean rm -f debian/pizzly.1 make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pizzly.substvars debian/files rm -fr -- debian/pizzly/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (0.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/pizzly-0.37.3+ds -B/build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/depend make[3]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pizzly-0.37.3+ds /build/reproducible-path/pizzly-0.37.3+ds /build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu/CMakeFiles/pizzly.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/build make[3]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' [ 50%] Building CXX object CMakeFiles/pizzly.dir/main.cpp.o /usr/bin/c++ -I/build/reproducible-path/pizzly-0.37.3+ds/. -g -O2 -ffile-prefix-map=/build/reproducible-path/pizzly-0.37.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/pizzly.dir/main.cpp.o -MF CMakeFiles/pizzly.dir/main.cpp.o.d -o CMakeFiles/pizzly.dir/main.cpp.o -c /build/reproducible-path/pizzly-0.37.3+ds/main.cpp In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:6: /build/reproducible-path/pizzly-0.37.3+ds/common.h: In constructor 'ProgramOptions::ProgramOptions()': /build/reproducible-path/pizzly-0.37.3+ds/common.h:18:7: warning: 'ProgramOptions::kmerScore' will be initialized after [-Wreorder] 18 | int kmerScore; | ^~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:17:7: warning: 'int ProgramOptions::insertSize' [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:17:7: warning: 'ProgramOptions::insertSize' will be initialized after [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:14:8: warning: 'bool ProgramOptions::ignoreProtein' [-Wreorder] 14 | bool ignoreProtein; | ^~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:8: /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In member function 'bool Transcriptome::translateTrPosition(const std::string&, int, std::string&, int&, std::string&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:117:10: warning: unused variable 'fw' [-Wunused-variable] 117 | bool fw = (trxmodel.strand == Strandedness::FORWARD); | ^~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'void writeTranscriptome(Transcriptome&, std::ostream&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:146:17: warning: unused variable 'gene_id' [-Wunused-variable] 146 | const auto &gene_id = gene.first; | ^~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:172:19: warning: unused variable 'tr_id' [-Wunused-variable] 172 | const auto &tr_id = trlist.first; | ^~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'void parseGTF(Transcriptome&, const std::string&, const ProgramOptions&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:282:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 282 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:329:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 329 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:392:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 392 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:9: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 205 | return std::move(m); | ~~~~~~~~~^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 214 | return std::move(m); | ~~~~~~~~~^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:251:9: warning: unused variable 'matchlen' [-Wunused-variable] 251 | int matchlen = seqan::length(krseq); | ^~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:311:19: warning: comparison of integer expressions of different signedness: 'int' and 'seqan::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 311 | if (tr_stop > seqan::length(trseq)) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 323 | return std::move(tlist); | ~~~~~~~~~^~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:709:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 709 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:738:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 738 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:765:11: warning: unused variable 'gap' [-Wunused-variable] 765 | int gap = d2 - d1; | ^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 781 | return std::move(ret); | ~~~~~~~~~^~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:883:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 883 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:929:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 929 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:867:17: warning: unused variable 'split_reads' [-Wunused-variable] 867 | int split_reads = spp.second; | ^~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1033:29: warning: loop variable 'p' creates a copy from type 'const std::pair > >' [-Wrange-loop-construct] 1033 | for (const auto p : trfmap) { | ^ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1033:29: note: use reference type to prevent copying 1033 | for (const auto p : trfmap) { | ^ | & /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1091:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1091 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1115:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1115 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1112:18: warning: unused variable 'firstJsonRead' [-Wunused-variable] 1112 | bool firstJsonRead = true; | ^~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/main.cpp: In function 'int main(int, const char**)': /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:126:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::unordered_map, seqan::String > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 126 | } else if (numTxpSeqFound != trx.seqs.size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'Strandedness operator~(const Strandedness&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:18:1: warning: control reaches end of non-void function [-Wreturn-type] 18 | } | ^ In file included from /usr/include/seqan/stream.h:119, from /usr/include/seqan/arg_parse.h:46, from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:2: In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = std::__cxx11::basic_string]', inlined from 'seqan::String seqan::_getNumbersFromString(const std::string&)' at /usr/include/seqan/arg_parse/arg_parse_version_check.h:356:46: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function 'seqan::String seqan::_getNumbersFromString(const std::string&)': /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = std::__cxx11::basic_string]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /usr/include/seqan/gff_io/gff_io_base.h:379:44: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]', inlined from 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]' at /usr/include/seqan/gff_io/gff_io_base.h:386:42: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function 'void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]': /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int&' to 'seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:435:15: warning: 'splitStrand' may be used uninitialized [-Wmaybe-uninitialized] 435 | if (forwardRead) { | ^~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:389:22: note: 'splitStrand' was declared here 389 | Strandedness splitStrand, safeStrand; | ^~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In function 'bool filterFusionRecord(const Transcriptome&, ProgramOptions&, const FusionRecord&, SplitRecord&)': /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:602:25: warning: 'st1' may be used uninitialized [-Wmaybe-uninitialized] 602 | splitrec.dir1 = st1 == Strandedness::FORWARD; // check read 1 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:554:18: note: 'st1' was declared here 554 | Strandedness st1,st2; | ^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:603:25: warning: 'st2' may be used uninitialized [-Wmaybe-uninitialized] 603 | splitrec.dir2 = st2 == Strandedness::FORWARD; // check read 2 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:554:22: note: 'st2' was declared here 554 | Strandedness st1,st2; | ^~~ [100%] Linking CXX executable pizzly /usr/bin/cmake -E cmake_link_script CMakeFiles/pizzly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pizzly-0.37.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/pizzly.dir/link.d CMakeFiles/pizzly.dir/main.cpp.o -o pizzly -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' [100%] Built target pizzly make[2]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-x86_64-linux-gnu' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-552LU_Mo create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/pizzly.substvars rm -fr -- debian/.debhelper/generated/pizzly/ debian/pizzly/ debian/tmp/ dh_auto_install --destdir=debian/pizzly/ install -m0755 -d /build/reproducible-path/pizzly-0.37.3\+ds/debian/pizzly debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds' help2man -N -n pizzly -s 1 obj-*/pizzly > debian/pizzly.1 dh_install install -m0755 -d debian/pizzly/usr/bin cp --reflink=auto -a ./obj-x86_64-linux-gnu/pizzly ./scripts/flatten_json.py ./scripts/get_fragment_length.py debian/pizzly/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_installdocs install -m0755 -d debian/pizzly/usr/share/doc/pizzly install -m0755 -d debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./README.md debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./debian/README.Debian debian/pizzly/usr/share/doc/pizzly chmod -R u\+rw,go=rX debian/pizzly/usr/share/doc install -p -m0644 debian/README.Debian debian/pizzly/usr/share/doc/pizzly/README.Debian install -p -m0644 debian/copyright debian/pizzly/usr/share/doc/pizzly/copyright dh_installchangelogs install -m0755 -d debian/pizzly/usr/share/doc/pizzly install -p -m0644 debian/.debhelper/generated/pizzly/dh_installchangelogs.dch.trimmed debian/pizzly/usr/share/doc/pizzly/changelog.Debian dh_installman install -m0755 -d debian/pizzly/usr/share/man/man1/ install -p -m0644 ./debian/pizzly.1 debian/pizzly/usr/share/man/man1/pizzly.1 man-recode --to-code UTF-8 --suffix .dh-new debian/pizzly/usr/share/man/man1/pizzly.1 mv debian/pizzly/usr/share/man/man1/pizzly.1.dh-new debian/pizzly/usr/share/man/man1/pizzly.1 chmod 0644 -- debian/pizzly/usr/share/man/man1/pizzly.1 dh_lintian install -m0755 -d debian/pizzly/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/pizzly/usr/share/lintian/overrides/pizzly dh_perl dh_link install -m0755 -d debian/pizzly/usr/bin rm -f debian/pizzly/usr/bin/pizzly_flatten_json.py ln -s flatten_json.py debian/pizzly/usr/bin/pizzly_flatten_json.py dh_strip_nondeterminism dh_compress cd debian/pizzly chmod a-x usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 gzip -9nf usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 cd '/build/reproducible-path/pizzly-0.37.3+ds' dh_fixperms find debian/pizzly ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/pizzly/usr/share/doc -type f -a -true -a ! -regex 'debian/pizzly/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/pizzly/usr/share/man debian/pizzly/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/pizzly/usr/bin/pizzly dh_strip -a install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/pizzly/usr/bin/pizzly debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/d4/202ab29587d2f6a2d798c496f98007e141a463.debug chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/d4/202ab29587d2f6a2d798c496f98007e141a463.debug strip --remove-section=.comment --remove-section=.note debian/pizzly/usr/bin/pizzly objcopy --add-gnu-debuglink debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/d4/202ab29587d2f6a2d798c496f98007e141a463.debug debian/pizzly/usr/bin/pizzly install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/usr/share/doc ln -s pizzly debian/.debhelper/pizzly/dbgsym-root/usr/share/doc/pizzly-dbgsym install -m0755 -d debian/.debhelper/pizzly dh_makeshlibs -a rm -f debian/pizzly/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/pizzly/DEBIAN dpkg-shlibdeps -Tdebian/pizzly.substvars debian/pizzly/usr/bin/pizzly dh_installdeb install -m0755 -d debian/pizzly/DEBIAN dh_gencontrol install -m0755 -d debian/pizzly/DEBIAN echo misc:Depends= >> debian/pizzly.substvars echo misc:Pre-Depends= >> debian/pizzly.substvars install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -cdebian/control -Pdebian/.debhelper/pizzly/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=pizzly-dbgsym "-DDepends=pizzly (= \${binary:Version})" "-DDescription=debug symbols for pizzly" -DBuild-Ids=d4202ab29587d2f6a2d798c496f98007e141a463 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -cdebian/control -Pdebian/pizzly chmod 0644 -- debian/pizzly/DEBIAN/control dh_md5sums install -m0755 -d debian/pizzly/DEBIAN cd debian/pizzly >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/pizzly/DEBIAN/md5sums install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN cd debian/.debhelper/pizzly/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/pizzly .. dpkg-deb --root-owner-group --build debian/.debhelper/pizzly/dbgsym-root .. dpkg-deb: building package 'pizzly-dbgsym' in '../pizzly-dbgsym_0.37.3+ds-9_amd64.deb'. dpkg-deb: building package 'pizzly' in '../pizzly_0.37.3+ds-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pizzly_0.37.3+ds-9_amd64.buildinfo dpkg-genchanges --build=binary -O../pizzly_0.37.3+ds-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1173293 and its subdirectories I: Current time: Tue Sep 2 01:07:21 -12 2025 I: pbuilder-time-stamp: 1756818441 Tue Sep 2 13:07:24 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Tue Sep 2 13:07:24 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Tue Sep 2 13:11:04 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Tue Sep 2 13:11:05 UTC 2025 I: pizzly_0.37.3+ds-9_amd64.changes: Format: 1.8 Date: Tue, 06 Dec 2022 20:00:06 +0100 Source: pizzly Binary: pizzly pizzly-dbgsym Architecture: amd64 Version: 0.37.3+ds-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: pizzly - Identifies gene fusions in RNA sequencing data Changes: pizzly (0.37.3+ds-9) unstable; urgency=medium . * Team upload. * Really fix watch file Checksums-Sha1: f562be64c5539c3084881a346a394bf6204b234b 3844512 pizzly-dbgsym_0.37.3+ds-9_amd64.deb 9de4557dac730e9ffafeb84eba783c36d6b5b10c 6258 pizzly_0.37.3+ds-9_amd64.buildinfo d4962699730e33a523d6a43ba0f17a89f4f2d443 307348 pizzly_0.37.3+ds-9_amd64.deb Checksums-Sha256: d58f136d3b4a61e01c1ae577bc2edc739903e32a94be125dfa1c68615168a8e7 3844512 pizzly-dbgsym_0.37.3+ds-9_amd64.deb aecf1ee0c476d98b8b6886c975c8e2ff5c6e1b32bd07cb157f9f906f9f1605fe 6258 pizzly_0.37.3+ds-9_amd64.buildinfo b42dce706dceb184195609998deaf2c8c792c224b551ff42f5f29d865666586a 307348 pizzly_0.37.3+ds-9_amd64.deb Files: 8ab78c4cc73b3ff9fe0704e8ca15b771 3844512 debug optional pizzly-dbgsym_0.37.3+ds-9_amd64.deb f2b1bbadaca277a27eafbd78ea39801a 6258 science optional pizzly_0.37.3+ds-9_amd64.buildinfo 2693e09ae32f42c5fa26805e81ae7900 307348 science optional pizzly_0.37.3+ds-9_amd64.deb Tue Sep 2 13:11:06 UTC 2025 I: diffoscope 305 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_11-66352.service; invocation ID: 4e9fda494ee14184b4c71e4b32da950d # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.q9lFvryG/pizzly_0.37.3+ds-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.q9lFvryG/pizzly_0.37.3+ds-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.q9lFvryG/pizzly_0.37.3+ds-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.q9lFvryG/b1/pizzly_0.37.3+ds-9_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.q9lFvryG/b2/pizzly_0.37.3+ds-9_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 214ms CPU time consumed: 174ms Memory peak: 18M (swap: 0B) Tue Sep 2 13:11:06 UTC 2025 I: diffoscope 305 found no differences in the changes files, and a .buildinfo file also exists. Tue Sep 2 13:11:06 UTC 2025 I: pizzly from forky built successfully and reproducibly on amd64. Tue Sep 2 13:11:07 UTC 2025 I: Removing signed pizzly_0.37.3+ds-9_amd64.buildinfo.asc files: removed './b1/pizzly_0.37.3+ds-9_amd64.buildinfo.asc' removed './b2/pizzly_0.37.3+ds-9_amd64.buildinfo.asc'