Sat Nov 1 05:00:34 UTC 2025 I: starting to build python-gsd/forky/amd64 on jenkins on '2025-11-01 05:00' Sat Nov 1 05:00:34 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_2/58481/console.log Sat Nov 1 05:00:34 UTC 2025 I: Downloading source for forky/python-gsd=4.2.0-1 Sat Nov 1 05:00:34 UTC 2025 E: Download of python-gsd=4.2.0-1 sources (for forky) failed. Sat Nov 1 05:00:34 UTC 2025 E: Sleeping 5m before re-trying... Sat Nov 1 05:05:34 UTC 2025 I: Downloading source for forky/python-gsd=4.2.0-1 Sat Nov 1 05:05:34 UTC 2025 E: Download of python-gsd=4.2.0-1 sources (for forky) failed. Sat Nov 1 05:05:34 UTC 2025 E: Sleeping 5m before re-trying... Sat Nov 1 05:10:34 UTC 2025 I: Downloading source for forky/python-gsd=4.2.0-1 --2025-11-01 05:10:34-- http://deb.debian.org/debian/pool/main/p/python-gsd/python-gsd_4.2.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2592 (2.5K) [text/prs.lines.tag] Saving to: ‘python-gsd_4.2.0-1.dsc’ 0K .. 100% 307M=0s 2025-11-01 05:10:34 (307 MB/s) - ‘python-gsd_4.2.0-1.dsc’ saved [2592/2592] Sat Nov 1 05:10:34 UTC 2025 I: python-gsd_4.2.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-gsd Binary: python3-gsd, python-gsd-doc Architecture: any all Version: 4.2.0-1 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: https://gsd.readthedocs.io/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/debichem-team/python-gsd Vcs-Git: https://salsa.debian.org/debichem-team/python-gsd.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), cython3 (>= 3.1~), dh-python, dh-sequence-numpy3, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-ipython, python3-numpy (>= 1:1.19.0~), python3-pytest , python3-sphinx, architecture-properties, architecture-is-little-endian Build-Depends-Indep: python3-doc, doxygen , furo, libjs-mathjax , python3-breathe, python-numpy-doc , python3-pandas, python3-sphinx-rtd-theme , python3-sphinx-copybutton , python3-sphinx-inline-tabs , python3-pickleshare Package-List: python-gsd-doc deb doc optional arch=all python3-gsd deb python optional arch=any Checksums-Sha1: c40e858530ec8fea865d13c890fd3b3833bb451f 141926 python-gsd_4.2.0.orig.tar.gz 94637e9434d397b5c180bb268c024d02cee991b8 6588 python-gsd_4.2.0-1.debian.tar.xz Checksums-Sha256: 391b9e90bbb760b4cbda5498549ae9a16fa5818d6bbea50aa4de2d0e8f57c61c 141926 python-gsd_4.2.0.orig.tar.gz 3dee67374b4c9405ac934f370e98a60ffe1c397211360fe36c70d2e56404e457 6588 python-gsd_4.2.0-1.debian.tar.xz Files: e9f06f65a889514bf10ce949923bd56d 141926 python-gsd_4.2.0.orig.tar.gz 471c22cda58ad8ab6d6fac52036de47e 6588 python-gsd_4.2.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmj+tfYACgkQVz7x5L1a Afpssg/9E4VMXlbkliYwWzFyQH+xwayC6ey5m37QTDIOB+hkIIyn60EpO8BOOQ6P AMIPSjshffPW4RvLdlqczsG5Suvpw5Nxk2MJr4A+OrUIqdNM/Me+6bdxo57mGQDC FcSMFjN7K4edUbQTg/rDbA+PAd/mNeZbv3thuHWSt5aviEmTNciRt4venHuLxN60 I+JvwxFbgb35+leiezDXE14nFU7xTFNV7+ftb4m0/3Z2mUNBkt05j6Yx3UloaZTF MYpHd9JNmrDlhyIAgTKlhmbZ4TUBr+Ow0GZFg9ksauy9FSX61fKLTr2BjVA5Bnqs 11uz3rNK6ElOq7e0LHsYTjcNUnsvJUVSzGW/tar5TDK8TFKpoZj2Me92ifU0yNzd XPmXBOnBtQtNRnY+OtKyfkf4YIHUFO1/3RsUeQbohzPN0NCpmvBYi63bnddtEXM6 ATE1Jk4/pgMIdVA2dv8vBrGiQQaehJnRGihCV3YHq/dXu7KADzfOvDtPJVIj4Pei 31mkXR3YzhWh7v285NB5uZ0Th7B2y77++rVfCM44tsSYkOx+D0x/Pn2MLJGgKnUC uUwd+0Rqo5aQQyFZ553y2vPThsqE/qBSODNsU//70lekIAKtGbxtc5Dg08upZBSZ /KmZ/ayYa5aSw8wPBa5/uFiOIokdX1vhKDFHtRgCTdmTZMnZJ/4= =dykk -----END PGP SIGNATURE----- Sat Nov 1 05:10:34 UTC 2025 I: Checking whether the package is not for us Sat Nov 1 05:10:34 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sat Nov 1 05:10:34 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sat Nov 1 05:17:49 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 3 23:33:35 -12 2026 I: pbuilder-time-stamp: 1796384015 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-gsd_4.2.0-1.dsc] I: copying [./python-gsd_4.2.0.orig.tar.gz] I: copying [./python-gsd_4.2.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-gsd_4.2.0-1.dsc: no acceptable signature found dpkg-source: info: extracting python-gsd in python-gsd-4.2.0 dpkg-source: info: unpacking python-gsd_4.2.0.orig.tar.gz dpkg-source: info: unpacking python-gsd_4.2.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying docs_local_scripts.patch dpkg-source: info: applying test_large_32bit.patch dpkg-source: info: applying doc_ignore_exceptions.patch dpkg-source: info: applying docs_build.patch dpkg-source: info: applying test_read_log_numpy2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/118575/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='620bbeb217974b52afbb67f0832730cf' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='118575' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NBOsvGPa/pbuilderrc_p0FD --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NBOsvGPa/b1 --logfile b1/build.log python-gsd_4.2.0-1.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/118575/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cython3 (>= 3.1~), dh-python, dh-sequence-numpy3, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-ipython, python3-numpy (>= 1:1.19.0~), python3-pytest, python3-sphinx, architecture-properties, architecture-is-little-endian, python3-doc, doxygen, furo, libjs-mathjax, python3-breathe, python-numpy-doc, python3-pandas, python3-sphinx-rtd-theme, python3-sphinx-copybutton, python3-sphinx-inline-tabs, python3-pickleshare dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cython3 (>= 3.1~); however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-numpy3; however: Package dh-sequence-numpy3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ipython; however: Package python3-ipython is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1:1.19.0~); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on architecture-properties; however: Package architecture-properties is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on python3-doc; however: Package python3-doc is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on furo; however: Package furo is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on python3-breathe; however: Package python3-breathe is not installed. pbuilder-satisfydepends-dummy depends on python-numpy-doc; however: Package python-numpy-doc is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-copybutton; however: Package python3-sphinx-copybutton is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-inline-tabs; however: Package python3-sphinx-inline-tabs is not installed. pbuilder-satisfydepends-dummy depends on python3-pickleshare; however: Package python3-pickleshare is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-lato{a} fonts-mathjax{a} furo{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp19{a} libclang1-19{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} liblab-gamut1{a} liblapack3{a} liblerc4{a} libllvm19{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} librav1e0.8{a} libreadline8t64{a} libsharpyuv0{a} libsm6{a} libsvtav1enc2{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2-16{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyuv0{a} libz3-4{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-numpy-doc{a} python3{a} python3-accessible-pygments{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-asttokens{a} python3-autocommand{a} python3-babel{a} python3-breathe{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-doc{a} python3-docutils{a} python3-executing{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-ipython{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jedi{a} python3-jinja2{a} python3-markupsafe{a} python3-matplotlib-inline{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parso{a} python3-pexpect{a} python3-pickleshare{a} python3-pkg-resources{a} python3-pluggy{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pygments{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytz{a} python3-requests{a} python3-roman-numerals{a} python3-setuptools{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-sphinx{a} python3-sphinx-copybutton{a} python3-sphinx-inline-tabs{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-stack-data{a} python3-traitlets{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-urllib3{a} python3-wcwidth{a} python3-wheel{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-doc{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-basic-ng{a} sphinx-common{a} sphinx-rtd-theme-common{a} tzdata{a} x11-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-liberation javascript-common libarchive-cpio-perl libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-bottleneck python3-html5lib python3-lxml python3-matplotlib python3-numba python3-numexpr python3-odf python3-openpyxl python3-pil python3-scipy python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 221 newly installed, 0 to remove and 0 not upgraded. Need to get 181 MB of archives. After unpacking 891 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 media-types all 14.0.0 [30.8 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.3.3+ds-3 [138 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.3.3+ds-3 [5151 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 architecture-properties amd64 0.2.6 [2336 B] Get: 34 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 cython3 amd64 3.1.6+dfsg-2 [2349 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 46 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 xml-core all 0.19 [20.1 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 docutils-common all 0.22.2+dfsg-2 [128 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libllvm19 amd64 1:19.1.7-7 [25.9 MB] Get: 61 http://deb.debian.org/debian forky/main amd64 libclang-cpp19 amd64 1:19.1.7-7 [13.2 MB] Get: 62 http://deb.debian.org/debian forky/main amd64 libclang1-19 amd64 1:19.1.7-7 [7603 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 doxygen amd64 1.9.8+ds-2.1 [5017 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 python3-accessible-pygments all 0.0.5-2 [1306 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 python3-soupsieve all 2.7-2 [39.0 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 python3-bs4 all 4.14.2-1 [116 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 sphinx-common all 8.2.3-8 [619 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 python3-babel all 2.17.0-1 [117 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 python3-roman-numerals all 3.1.0-2 [8740 B] Get: 88 http://deb.debian.org/debian forky/main amd64 python3-docutils all 0.22.2+dfsg-2 [432 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 90 http://deb.debian.org/debian forky/main amd64 python3-markupsafe amd64 3.0.3-1 [13.8 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 94 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 python3-snowballstemmer all 3.0.1-1 [63.5 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 python3-sphinx all 8.2.3-8 [477 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 sphinx-basic-ng all 1.0.0~beta2-1 [13.0 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 furo all 2025.09.25+dfsg-1 [62.0 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libcdt5 amd64 2.42.4-3 [40.3 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libcgraph6 amd64 2.42.4-3 [64.0 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 libaom3 amd64 3.13.1-2 [1906 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 librav1e0.8 amd64 0.8.1-5 [976 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 libyuv0 amd64 0.0.1919.20250919-1 [175 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libavif16 amd64 1.3.0-1+b1 [137 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 libheif-plugin-dav1d amd64 1.20.2-2+b1 [19.1 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 libde265-0 amd64 1.0.16-1 [189 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libheif-plugin-libde265 amd64 1.20.2-2+b1 [17.7 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 libheif1 amd64 1.20.2-2+b1 [601 kB] Get: 120 http://deb.debian.org/debian forky/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 122 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 124 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 125 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libgd3 amd64 2.3.3-13 [126 kB] Get: 133 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.86.1-1 [1546 kB] Get: 134 http://deb.debian.org/debian forky/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2+b1 [160 kB] Get: 135 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 137 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 140 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 libltdl7 amd64 2.5.4-7 [416 kB] Get: 142 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 145 http://deb.debian.org/debian forky/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get: 147 http://deb.debian.org/debian forky/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 148 http://deb.debian.org/debian forky/main amd64 libpango-1.0-0 amd64 1.56.3-2 [239 kB] Get: 149 http://deb.debian.org/debian forky/main amd64 libpangoft2-1.0-0 amd64 1.56.3-2 [62.0 kB] Get: 150 http://deb.debian.org/debian forky/main amd64 libpangocairo-1.0-0 amd64 1.56.3-2 [38.1 kB] Get: 151 http://deb.debian.org/debian forky/main amd64 libpathplan4 amd64 2.42.4-3 [42.6 kB] Get: 152 http://deb.debian.org/debian forky/main amd64 libgvc6 amd64 2.42.4-3 [686 kB] Get: 153 http://deb.debian.org/debian forky/main amd64 libgvpr2 amd64 2.42.4-3 [192 kB] Get: 154 http://deb.debian.org/debian forky/main amd64 liblab-gamut1 amd64 2.42.4-3 [198 kB] Get: 155 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 156 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 157 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 158 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get: 159 http://deb.debian.org/debian forky/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get: 160 http://deb.debian.org/debian forky/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get: 161 http://deb.debian.org/debian forky/main amd64 graphviz amd64 2.42.4-3 [621 kB] Get: 162 http://deb.debian.org/debian forky/main amd64 libexpat1-dev amd64 2.7.3-1 [165 kB] Get: 163 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 164 http://deb.debian.org/debian forky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 165 http://deb.debian.org/debian forky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 166 http://deb.debian.org/debian forky/main amd64 libpython3.13 amd64 3.13.9-1 [2184 kB] Get: 167 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 168 http://deb.debian.org/debian forky/main amd64 libpython3.13-dev amd64 3.13.9-1 [5311 kB] Get: 169 http://deb.debian.org/debian forky/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 170 http://deb.debian.org/debian forky/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 171 http://deb.debian.org/debian forky/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 172 http://deb.debian.org/debian forky/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 173 http://deb.debian.org/debian forky/main amd64 python3-build all 1.2.2-4 [36.2 kB] Get: 174 http://deb.debian.org/debian forky/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 175 http://deb.debian.org/debian forky/main amd64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 176 http://deb.debian.org/debian forky/main amd64 python-numpy-doc all 1:2.3.3+ds-3 [7268 kB] Get: 177 http://deb.debian.org/debian forky/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 178 http://deb.debian.org/debian forky/main amd64 python3.13-dev amd64 3.13.9-1 [504 kB] Get: 179 http://deb.debian.org/debian forky/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 180 http://deb.debian.org/debian forky/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 181 http://deb.debian.org/debian forky/main amd64 python3-asttokens all 3.0.0-2 [20.2 kB] Get: 182 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 183 http://deb.debian.org/debian forky/main amd64 python3-breathe all 4.36.0-2 [81.0 kB] Get: 184 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 185 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 186 http://deb.debian.org/debian forky/main amd64 python3.13-doc all 3.13.9-1 [15.4 MB] Get: 187 http://deb.debian.org/debian forky/main amd64 python3-doc all 3.13.7-1 [10.4 kB] Get: 188 http://deb.debian.org/debian forky/main amd64 python3-executing all 2.2.0-0.3 [24.6 kB] Get: 189 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 190 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 191 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 192 http://deb.debian.org/debian forky/main amd64 python3-iniconfig all 2.1.0-1 [7432 B] Get: 193 http://deb.debian.org/debian forky/main amd64 python3-parso all 0.8.5-1 [68.2 kB] Get: 194 http://deb.debian.org/debian forky/main amd64 python3-typeshed all 0.0~git20241223.ea91db2-4 [1531 kB] Get: 195 http://deb.debian.org/debian forky/main amd64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get: 196 http://deb.debian.org/debian forky/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 197 http://deb.debian.org/debian forky/main amd64 python3-matplotlib-inline all 0.1.7-1 [9032 B] Get: 198 http://deb.debian.org/debian forky/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 199 http://deb.debian.org/debian forky/main amd64 python3-prompt-toolkit all 3.0.52-1 [280 kB] Get: 200 http://deb.debian.org/debian forky/main amd64 python3-pure-eval all 0.2.3-1 [11.2 kB] Get: 201 http://deb.debian.org/debian forky/main amd64 python3-stack-data all 0.6.3-1 [21.6 kB] Get: 202 http://deb.debian.org/debian forky/main amd64 python3-ptyprocess all 0.7.0-6 [14.5 kB] Get: 203 http://deb.debian.org/debian forky/main amd64 python3-pexpect all 4.9-3 [55.6 kB] Get: 204 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 205 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 206 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 207 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 208 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 209 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 210 http://deb.debian.org/debian forky/main amd64 python3-ipython all 8.35.0-2 [576 kB] Get: 211 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2025.2-4 [31.8 kB] Get: 212 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-2 [4362 kB] Get: 213 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.3.3+dfsg-2 [2935 kB] Get: 214 http://deb.debian.org/debian forky/main amd64 python3-pickleshare all 0.7.5-5 [7600 B] Get: 215 http://deb.debian.org/debian forky/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 216 http://deb.debian.org/debian forky/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 217 http://deb.debian.org/debian forky/main amd64 python3-sphinx-copybutton all 0.5.2-3 [18.1 kB] Get: 218 http://deb.debian.org/debian forky/main amd64 python3-sphinx-inline-tabs all 2023.4.21-3 [36.0 kB] Get: 219 http://deb.debian.org/debian forky/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1023 kB] Get: 220 http://deb.debian.org/debian forky/main amd64 python3-sphinxcontrib.jquery all 4.1-6 [7496 B] Get: 221 http://deb.debian.org/debian forky/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [29.7 kB] Fetched 181 MB in 3s (51.9 MB/s) Preconfiguring packages ... 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Setting up python-babel-localedata (2.17.0-1) ... Setting up librav1e0.8:amd64 (0.8.1-5) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Dec 4 11:35:37 UTC 2026. Universal Time is now: Fri Dec 4 11:35:37 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.7.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up libpathplan4:amd64 (2.42.4-3) ... Setting up libann0 (1.1.2+doc-9+b1) ... Setting up libfribidi0:amd64 (1.0.16-3) ... Setting up libimagequant0:amd64 (4.4.0-3) ... 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Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.22.2+dfsg-2) ... Setting up python3-sphinx (8.2.3-8) ... Setting up python3-sphinx-copybutton (0.5.2-3) ... Setting up python3-breathe (4.36.0-2) ... Setting up python3-sphinxcontrib.jquery (4.1-6) ... Setting up sphinx-basic-ng (1.0.0~beta2-1) ... Setting up python3-sphinx-inline-tabs (2023.4.21-3) ... Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... Setting up furo (2025.09.25+dfsg-1) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-gsd-4.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-gsd_4.2.0-1_source.changes dpkg-buildpackage: info: source package python-gsd dpkg-buildpackage: info: source version 4.2.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from python-gsd-4.2.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/python-gsd-4.2.0' dh_clean rm -f gsd/fl.c || /bin/true rm -rf devdoc rm -rf gsd/test/.pytest_cache make[1]: Leaving directory '/build/reproducible-path/python-gsd-4.2.0' debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-gsd-4.2.0/.pybuild/cpython3_3.13_gsd * Building wheel... Compiling gsd/fl.pyx because it changed. [1/1] Cythonizing gsd/fl.pyx running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-313/gsd copying gsd/pygsd.py -> build/lib.linux-x86_64-cpython-313/gsd copying gsd/hoomd.py -> build/lib.linux-x86_64-cpython-313/gsd copying gsd/version.py -> build/lib.linux-x86_64-cpython-313/gsd copying gsd/__init__.py -> build/lib.linux-x86_64-cpython-313/gsd copying gsd/pytest_plugin_validate.py -> build/lib.linux-x86_64-cpython-313/gsd copying gsd/__main__.py -> build/lib.linux-x86_64-cpython-313/gsd copying gsd/conftest.py -> build/lib.linux-x86_64-cpython-313/gsd creating build/lib.linux-x86_64-cpython-313/gsd/test copying gsd/test/test_fl.py -> build/lib.linux-x86_64-cpython-313/gsd/test copying gsd/test/test_hoomd.py -> build/lib.linux-x86_64-cpython-313/gsd/test copying gsd/test/test_largefile.py -> build/lib.linux-x86_64-cpython-313/gsd/test copying gsd/test/conftest.py -> build/lib.linux-x86_64-cpython-313/gsd/test running egg_info creating gsd.egg-info writing gsd.egg-info/PKG-INFO writing dependency_links to gsd.egg-info/dependency_links.txt writing entry points to gsd.egg-info/entry_points.txt writing requirements to gsd.egg-info/requires.txt writing top-level names to gsd.egg-info/top_level.txt writing manifest file 'gsd.egg-info/SOURCES.txt' dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'gsd.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'gsd.egg-info/SOURCES.txt' copying gsd/fl.c -> build/lib.linux-x86_64-cpython-313/gsd copying gsd/fl.pyx -> build/lib.linux-x86_64-cpython-313/gsd copying gsd/gsd.c -> build/lib.linux-x86_64-cpython-313/gsd copying gsd/gsd.h -> build/lib.linux-x86_64-cpython-313/gsd copying gsd/libgsd.pxd -> build/lib.linux-x86_64-cpython-313/gsd copying gsd/test/pytest.ini -> build/lib.linux-x86_64-cpython-313/gsd/test copying gsd/test/test_gsd_v1.gsd -> build/lib.linux-x86_64-cpython-313/gsd/test running build_ext building 'gsd.fl' extension creating build/temp.linux-x86_64-cpython-313/gsd x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-4.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPy_LIMITED_API=51052544 -Igsd -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c gsd/fl.c -o build/temp.linux-x86_64-cpython-313/gsd/fl.o x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-4.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPy_LIMITED_API=51052544 -Igsd -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c gsd/gsd.c -o build/temp.linux-x86_64-cpython-313/gsd/gsd.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-4.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/gsd/fl.o build/temp.linux-x86_64-cpython-313/gsd/gsd.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/gsd/fl.abi3.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-313/gsd/gsd.c -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-313/gsd/gsd.h -> build/bdist.linux-x86_64/wheel/./gsd creating build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-313/gsd/test/test_fl.py -> build/bdist.linux-x86_64/wheel/./gsd/test copying build/lib.linux-x86_64-cpython-313/gsd/test/test_hoomd.py -> build/bdist.linux-x86_64/wheel/./gsd/test copying build/lib.linux-x86_64-cpython-313/gsd/test/pytest.ini -> build/bdist.linux-x86_64/wheel/./gsd/test copying build/lib.linux-x86_64-cpython-313/gsd/test/test_gsd_v1.gsd -> build/bdist.linux-x86_64/wheel/./gsd/test copying build/lib.linux-x86_64-cpython-313/gsd/test/test_largefile.py -> build/bdist.linux-x86_64/wheel/./gsd/test copying build/lib.linux-x86_64-cpython-313/gsd/test/conftest.py -> build/bdist.linux-x86_64/wheel/./gsd/test copying build/lib.linux-x86_64-cpython-313/gsd/pygsd.py -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-313/gsd/hoomd.py -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-313/gsd/version.py -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-313/gsd/__init__.py -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-313/gsd/fl.abi3.so -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-313/gsd/fl.pyx -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-313/gsd/fl.c -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-313/gsd/pytest_plugin_validate.py -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-313/gsd/__main__.py -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-313/gsd/libgsd.pxd -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-313/gsd/conftest.py -> build/bdist.linux-x86_64/wheel/./gsd running install_egg_info Copying gsd.egg-info to build/bdist.linux-x86_64/wheel/./gsd-4.2.0.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/gsd-4.2.0.dist-info/WHEEL creating '/build/reproducible-path/python-gsd-4.2.0/.pybuild/cpython3_3.13_gsd/.tmp-ugtivhzd/gsd-4.2.0-cp311-abi3-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'gsd/__init__.py' adding 'gsd/__main__.py' adding 'gsd/conftest.py' adding 'gsd/fl.abi3.so' adding 'gsd/fl.c' adding 'gsd/fl.pyx' adding 'gsd/gsd.c' adding 'gsd/gsd.h' adding 'gsd/hoomd.py' adding 'gsd/libgsd.pxd' adding 'gsd/pygsd.py' adding 'gsd/pytest_plugin_validate.py' adding 'gsd/version.py' adding 'gsd/test/conftest.py' adding 'gsd/test/pytest.ini' adding 'gsd/test/test_fl.py' adding 'gsd/test/test_gsd_v1.gsd' adding 'gsd/test/test_hoomd.py' adding 'gsd/test/test_largefile.py' adding 'gsd-4.2.0.dist-info/licenses/LICENSE' adding 'gsd-4.2.0.dist-info/METADATA' adding 'gsd-4.2.0.dist-info/WHEEL' adding 'gsd-4.2.0.dist-info/entry_points.txt' adding 'gsd-4.2.0.dist-info/top_level.txt' adding 'gsd-4.2.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built gsd-4.2.0-cp311-abi3-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/python-gsd-4.2.0' doxygen warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 15 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'TCL_SUBST' at line 43 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 152 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 168 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 200 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 232 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 234 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 245 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 266 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 301 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 306 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 307 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 332 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.8 Notice: Output directory 'devdoc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/python-gsd-4.2.0/gsd Searching for files in directory /build/reproducible-path/python-gsd-4.2.0/gsd/test Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/python-gsd-4.2.0/gsd/gsd.h... Parsing file /build/reproducible-path/python-gsd-4.2.0/gsd/gsd.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file gsd/gsd.h... Generating file documentation... Generating docs for file gsd/gsd.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound gsd_byte_buffer... Generating docs for compound gsd_handle... Generating docs for compound gsd_header... Generating docs for compound gsd_index_buffer... Generating docs for compound gsd_index_entry... Generating docs for compound gsd_name_buffer... Generating docs for compound gsd_name_id_map... Generating docs for compound gsd_name_id_pair... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class gsd_byte_buffer Generating XML output for class gsd_handle Generating XML output for class gsd_header Generating XML output for class gsd_index_buffer Generating XML output for class gsd_index_entry Generating XML output for class gsd_name_buffer Generating XML output for class gsd_name_id_map Generating XML output for class gsd_name_id_pair Generating XML output for file gsd.h Generate XML output for dir /build/reproducible-path/python-gsd-4.2.0/gsd/ Running plantuml with JAVA... type lookup cache used 135/65536 hits=373 misses=144 symbol lookup cache used 173/65536 hits=542 misses=173 finished... PYTHONPATH=/build/reproducible-path/python-gsd-4.2.0/.pybuild/cpython3_3.13_gsd/build READTHEDOCS=True sphinx-build -b html doc /build/reproducible-path/python-gsd-4.2.0/.pybuild/html # HTML generator Running Sphinx v8.2.3 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. loading intersphinx inventory 'python' from /usr/share/doc/python3/html/objects.inv ... loading intersphinx inventory 'numpy' from /usr/share/doc/python-numpy/html/objects.inv ... building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 22 source files that are out of date updating environment: [new config] 22 added, 0 changed, 0 removed reading sources... [ 5%] c-api reading sources... [ 9%] changes reading sources... [ 14%] cli reading sources... [ 18%] community reading sources... [ 23%] contributing reading sources... [ 27%] credits reading sources... [ 32%] file-layer reading sources... [ 36%] fl-examples /usr/lib/python3/dist-packages/IPython/paths.py:69: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," reading sources... [ 41%] hoomd-examples implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/invalid reading sources... [ 45%] index reading sources... [ 50%] indices reading sources... [ 55%] installation reading sources... [ 59%] license reading sources... [ 64%] python-api reading sources... [ 68%] python-module-gsd.fl reading sources... [ 73%] python-module-gsd.hoomd reading sources... [ 77%] python-module-gsd.pygsd reading sources... [ 82%] python-module-gsd.version reading sources... [ 86%] schema-hoomd reading sources... [ 91%] shapes reading sources... [ 95%] specification reading sources... [100%] style /build/reproducible-path/python-gsd-4.2.0/doc/c-api.rst:12: WARNING: Invalid C declaration: Expected identifier in nested name. [error at 0] ^ /build/reproducible-path/python-gsd-4.2.0/doc/c-api.rst:12: WARNING: Invalid C declaration: Expected identifier in nested name. [error at 0] ^ docstring of gsd.fl.GSDFile.chunk_exists:13: ERROR: Error in "highlight" directive: no content permitted. .. highlight:: python with gsd.fl.open(name='file.gsd', mode='w', application="My application", schema="My Schema", schema_version=[1,0]) as f: f.write_chunk(name='chunk1', data=numpy.array([1,2,3,4], dtype=numpy.float32)) f.write_chunk(name='chunk2', data=numpy.array([[5,6],[7,8]], dtype=numpy.float32)) f.end_frame() f.write_chunk(name='chunk1', data=numpy.array([9,10,11,12], dtype=numpy.float32)) f.write_chunk(name='chunk2', data=numpy.array([[13,14],[15,16]], dtype=numpy.float32)) f.end_frame() f = gsd.fl.open(name='file.gsd', mode='r', application="My application", schema="My Schema", schema_version=[1,0]) f.chunk_exists(frame=0, name='chunk1') f.chunk_exists(frame=0, name='chunk2') f.chunk_exists(frame=0, name='chunk3') f.chunk_exists(frame=10, name='chunk1') f.close() [docutils] docstring of gsd.fl.GSDFile.truncate:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] docstring of gsd.fl.GSDFile.truncate:14: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] docstring of gsd.fl.GSDFile.truncate:19: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/python-gsd-4.2.0/.pybuild/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-gsd-4.2.0/.pybuild/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-gsd-4.2.0/.pybuild/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-gsd-4.2.0/.pybuild/html/_static/copybutton.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 5%] c-api writing output... [ 9%] changes writing output... [ 14%] cli writing output... [ 18%] community writing output... [ 23%] contributing writing output... [ 27%] credits writing output... [ 32%] file-layer writing output... [ 36%] fl-examples writing output... [ 41%] hoomd-examples writing output... [ 45%] index writing output... [ 50%] indices writing output... [ 55%] installation writing output... [ 59%] license writing output... [ 64%] python-api writing output... [ 68%] python-module-gsd.fl writing output... [ 73%] python-module-gsd.hoomd writing output... [ 77%] python-module-gsd.pygsd writing output... [ 82%] python-module-gsd.version writing output... [ 86%] schema-hoomd writing output... [ 91%] shapes writing output... [ 95%] specification writing output... [100%] style /build/reproducible-path/python-gsd-4.2.0/.pybuild/cpython3_3.13_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.BondData:13: WARNING: 'any' reference target not found: hoomd.State [ref.any] /build/reproducible-path/python-gsd-4.2.0/.pybuild/cpython3_3.13_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ConstraintData:11: WARNING: 'any' reference target not found: hoomd.State [ref.any] /build/reproducible-path/python-gsd-4.2.0/.pybuild/cpython3_3.13_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:11: WARNING: 'any' reference target not found: hoomd.State [ref.any] /build/reproducible-path/python-gsd-4.2.0/doc/schema-hoomd.rst:21: WARNING: 'any' reference target not found: hoomd.State [ref.any] generating indices... genindex py-modindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 10 warnings. The HTML pages are in ../../build/reproducible-path/python-gsd-4.2.0/.pybuild/html. make[1]: Leaving directory '/build/reproducible-path/python-gsd-4.2.0' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-gsd-4.2.0/.pybuild/cpython3_3.13_gsd/build; python3.13 -m pytest /build/reproducible-path/python-gsd-4.2.0/gsd/test ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/python-gsd-4.2.0/gsd/test configfile: pytest.ini plugins: typeguard-4.4.4 collected 141 items ../../../gsd/test/test_fl.py ........................................... [ 30%] ............................................. [ 62%] ../../../gsd/test/test_hoomd.py ........................................ [ 90%] .......... [ 97%] ../../../gsd/test/test_largefile.py ... [100%] =============================== warnings summary =============================== ../../../gsd/test/test_largefile.py:15 /build/reproducible-path/python-gsd-4.2.0/gsd/test/test_largefile.py:15: PytestUnknownMarkWarning: Unknown pytest.mark.validate - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.validate -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 141 passed, 1 warning in 236.01s (0:03:56) ================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-gsd-doc. If the default is wrong, please use --doc-main-package or the X-Doc-Main-Package field dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-gsd-doc/usr/share/doc/python-gsd-doc/html/_static/copybutton.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-gsd-doc/usr/share/doc/python-gsd-doc/html/_static/clipboard.min.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-gsd-doc/usr/share/doc/python-gsd-doc/html/_static/tabs.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-gsd-doc/usr/share/doc/python-gsd-doc/html/_static/copybutton_funcs.js dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/python3-gsd/usr/bin/gsd dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_numpy3 -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-gsd-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-gsd-doc' in '../python-gsd-doc_4.2.0-1_all.deb'. dpkg-deb: building package 'python3-gsd-dbgsym' in '../python3-gsd-dbgsym_4.2.0-1_amd64.deb'. dpkg-deb: building package 'python3-gsd' in '../python3-gsd_4.2.0-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../python-gsd_4.2.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-gsd_4.2.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-gsd-4.2.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/118575 and its subdirectories I: Current time: Thu Dec 3 23:40:47 -12 2026 I: pbuilder-time-stamp: 1796384447 Sat Nov 1 05:17:49 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Sat Nov 1 05:17:49 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Sat Nov 1 05:19:36 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Sat Nov 1 05:19:36 UTC 2025 I: python-gsd_4.2.0-1_amd64.changes: Format: 1.8 Date: Mon, 27 Oct 2025 00:51:52 +0100 Source: python-gsd Binary: python-gsd-doc python3-gsd python3-gsd-dbgsym Architecture: all amd64 Version: 4.2.0-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Drew Parsons Description: python-gsd-doc - native file format for HOOMD-blue (documentation) python3-gsd - native file format for HOOMD-blue (Python 3 module) Closes: 1118348 Changes: python-gsd (4.2.0-1) unstable; urgency=medium . * New upstream release - versioned Build-Depends: cython3 (>= 3.1~). Closes: #1118348. - Build-Depends-Indep: python3-sphinx-inline-tabs * Build-Depends-Indep: python3-pickleshare for ipython bookmarks in docs Checksums-Sha1: f50fb2f38e53a4b5bfadcaa579082d812dfd303f 132280 python-gsd-doc_4.2.0-1_all.deb a50fa72c38db3bb32ded8bb05b254c1cf876114f 11171 python-gsd_4.2.0-1_amd64.buildinfo 733d027f92cb514f0602aee57521c4763feba2ed 317604 python3-gsd-dbgsym_4.2.0-1_amd64.deb 837cbf0b67dd802171fab9202b9694c84ee35aa1 205668 python3-gsd_4.2.0-1_amd64.deb Checksums-Sha256: 6e1500467210e37a05fe44d3c1824914220baa4ef84058f5f15087e3fb189257 132280 python-gsd-doc_4.2.0-1_all.deb 58c96e743cbcf4227ec0beee09cb6a6f8690f6afd881dbccc31dc43678c6a2ea 11171 python-gsd_4.2.0-1_amd64.buildinfo eb756ca7e55abf1dabe5263632de55647dec9244d9955de1f98d5df21eb7045b 317604 python3-gsd-dbgsym_4.2.0-1_amd64.deb 613a9c74f8692684ed9a9cab667e3a0fc8b383f33bf90d74e198652f83da2285 205668 python3-gsd_4.2.0-1_amd64.deb Files: 5a5f9301ce5925e037c10e6133e73fb8 132280 doc optional python-gsd-doc_4.2.0-1_all.deb a6fc51ee719a62e11d7f423b257d2d02 11171 python optional python-gsd_4.2.0-1_amd64.buildinfo 70f451e42ac8d63eb258b6506c49db15 317604 debug optional python3-gsd-dbgsym_4.2.0-1_amd64.deb 881be85dde93c0cef165bb41d87d8aa4 205668 python optional python3-gsd_4.2.0-1_amd64.deb Sat Nov 1 05:19:37 UTC 2025 I: diffoscope 307 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_2-58481.service; invocation ID: 9cb1c5e79f9b4b6aafc6f0c927e6eeb6 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NBOsvGPa/python-gsd_4.2.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NBOsvGPa/python-gsd_4.2.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NBOsvGPa/python-gsd_4.2.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NBOsvGPa/b1/python-gsd_4.2.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.NBOsvGPa/b2/python-gsd_4.2.0-1_amd64.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer ## command (total time: 0.228s) 0.102s 8 calls diff 0.082s 11 calls js-beautify 0.030s 6 calls xz 0.005s 11 calls html2text 0.004s 3 calls cmp 0.004s 3 calls cmp (external) 0.001s 16 calls cmp (internal) ## compare_files (cumulative) (total time: 4.721s) 0.998s 1 call abc.DotChangesFile 0.985s 1 call abc.DebFile 0.972s 2 calls abc.XzFile 0.922s 1 call abc.DebDataTarFile 0.781s 1 call abc.JavaScriptFile 0.042s 1 call abc.HtmlFile 0.017s 1 call abc.TarFile 0.004s 1 call abc.Md5sumsFile ## container_extract (total time: 0.057s) 0.030s 6 calls diffoscope.comparators.xz.XzContainer 0.023s 148 calls diffoscope.comparators.deb.DebTarContainer 0.002s 8 calls diffoscope.comparators.deb.DebContainer 0.002s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.010s) 0.010s 20 calls linediff ## has_same_content_as (total time: 0.006s) 0.003s 3 calls abc.DebFile 0.002s 1 call abc.DebDataTarFile 0.000s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 2 calls abc.TextFile 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.HtmlFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.TarFile 0.000s 1 call abc.JavaScriptFile ## main (total time: 1.347s) 1.343s 2 calls outputs 0.004s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.090s) 0.090s 1 call html 0.000s 1 call text 0.000s 1 call json ## recognizes (total time: 0.056s) 0.031s 584 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.014s 12 calls diffoscope.comparators.binary.FilesystemFile 0.008s 264 calls diffoscope.comparators.utils.archive.ArchiveMember 0.003s 162 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.285s) 0.285s 18 calls specialize Finished with result: success Main processes terminated with: code=exited, status=1/FAILURE Service runtime: 1.584s CPU time consumed: 1.633s Memory peak: 68M (swap: 0B) Sat Nov 1 05:19:38 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sat Nov 1 05:19:38 UTC 2025 E: python-gsd failed to build reproducibly in forky on amd64. Sat Nov 1 05:19:39 UTC 2025 I: Removing signed python-gsd_4.2.0-1_amd64.buildinfo.asc files: removed './b1/python-gsd_4.2.0-1_amd64.buildinfo.asc' removed './b2/python-gsd_4.2.0-1_amd64.buildinfo.asc'