Sun Sep 7 17:07:30 UTC 2025 I: starting to build python-skbio/forky/amd64 on jenkins on '2025-09-07 17:07' Sun Sep 7 17:07:30 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_31/56712/console.log Sun Sep 7 17:07:30 UTC 2025 I: Downloading source for forky/python-skbio=0.6.3-1 --2025-09-07 17:07:30-- http://deb.debian.org/debian/pool/main/p/python-skbio/python-skbio_0.6.3-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3059 (3.0K) [text/prs.lines.tag] Saving to: ‘python-skbio_0.6.3-1.dsc’ 0K .. 100% 327M=0s 2025-09-07 17:07:30 (327 MB/s) - ‘python-skbio_0.6.3-1.dsc’ saved [3059/3059] Sun Sep 7 17:07:31 UTC 2025 I: python-skbio_0.6.3-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-skbio Binary: python-skbio-doc, python3-skbio Architecture: any all Version: 0.6.3-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Kevin Murray , Étienne Mollier Homepage: https://github.com/biocore/scikit-bio Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/python-skbio Vcs-Git: https://salsa.debian.org/med-team/python-skbio.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), cython3 (>= 3), dh-sequence-python3, python3-all-dev, python3-biom-format, python3-setuptools, python3-numpy, python3-matplotlib, python3-cachecontrol, python3-decorator, python3-h5py, python3-pandas, python3-scipy, python3-ipython, python3-hdmedians, python3-sklearn, python3-natsort, python3-statsmodels, libssw-dev, sphinx-common, libsimde-dev, python3-numpy-dev Build-Depends-Arch: python3-pytest , architecture-is-64-bit Build-Depends-Indep: python3-sphinx , python3-sphinx-design , python3-sphinx-copybutton , python3-sphinx-sitemap , python3-pydata-sphinx-theme , python3-doc , python3-numpydoc , python-scipy-doc , python-biom-format-doc , python-pandas-doc , python-numpy-doc , python-matplotlib-doc , python-sklearn-doc , python-statsmodels-doc Package-List: python-skbio-doc deb doc optional arch=all profile=!nodoc python3-skbio deb python optional arch=any Checksums-Sha1: c6e472a29d36e3828acae4d90bb112b68b6f64d1 4518288 python-skbio_0.6.3.orig.tar.gz 1ede156a978937bf741681e2298377bc1be5b716 11276 python-skbio_0.6.3-1.debian.tar.xz Checksums-Sha256: e7c2727d0bc84fb46eeeebdd38e5c98287407a8fa6a7e6be4c73f9134b934ce8 4518288 python-skbio_0.6.3.orig.tar.gz e003e2086d0b3b019ff9bc60877829338df36ca23725ad4fcb37511e623df288 11276 python-skbio_0.6.3-1.debian.tar.xz Files: c50739195544daffc9acf52b2c369e53 4518288 python-skbio_0.6.3.orig.tar.gz 502b0f8e8cca19c781b132abd22ff6da 11276 python-skbio_0.6.3-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmi3LNESHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+biY5EQAKZJhJacxHgmNabneUin/E1mEjT8DLh4 lfRERusrHVPIFwaTt/2C498itq0k7EtXrsDTjaz5k/yZaeMWI5EEEFJZZWr5NKtZ sJLdZJ064XLMQvKPHqIVsaz1AU8FJTAnO1q5HMOdBCUi8OCkitnqSmQ0g3mgcVLw k2Wehx2XFkTLIN3LFFIETFAdVHWcAXBFpKpu4U94vUPHmwBDeRowPbfddDT0IwKf KkN60dn9YG7C23rtF+0UaZvw3yQHvRMK7GSeEOIz1NoalcBRapJTGkKCh6H00f4V nES4jZGNAwTGibsdlMHfnrSHArMOxbQSW5mLV6hvjwdfIRbppvGwJTLtqcfiXPNw 3Jt/FHpkHiStuOWaj7WqNyv8fLHceG8s6Z+sNbDROIhAof3XYeKD/UgciUf1qI14 AvFDTdWOVE1hn4kOPPUVkJRENAdyVBD4gsNcNHlHffOdfsUi9I0wImo2mSKv+8xw wdJ+sAbw+clF5z78p72QP/NtGvvTcibqcQUIzkc0flNr911Y8Qp8ssRuB9xXW8MJ rzDxb+BGaB+8NrMmEoANuABUBuhUDKwV/1SKyb4R4KsjY9MSgfM09i6Q2MErVJ97 wvJ+zVU94dMlO0KoaunirHoOICzcJdhlKFuHJf9uEeKt5mCf+y5/ehXbtQEpPPRu nOm5a7MXdnxJ =zvmp -----END PGP SIGNATURE----- Sun Sep 7 17:07:31 UTC 2025 I: Checking whether the package is not for us Sun Sep 7 17:07:31 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sun Sep 7 17:07:31 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sun Sep 7 17:17:45 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 7 05:07:32 -12 2025 I: pbuilder-time-stamp: 1757264852 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-skbio_0.6.3-1.dsc] I: copying [./python-skbio_0.6.3.orig.tar.gz] I: copying [./python-skbio_0.6.3-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-skbio_0.6.3-1.dsc: no acceptable signature found dpkg-source: info: extracting python-skbio in python-skbio-0.6.3 dpkg-source: info: unpacking python-skbio_0.6.3.orig.tar.gz dpkg-source: info: unpacking python-skbio_0.6.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_packaged_simde dpkg-source: info: applying mathjax-path dpkg-source: info: applying 0002-use-libsww-as-library-not-embedded-src.patch dpkg-source: info: applying no_privacy_breach_logo.patch dpkg-source: info: applying local_inventory dpkg-source: info: applying docs-no-version-switch dpkg-source: info: applying privacy I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2107516/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5b75f8880ecb419a807df14579ca5cb0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2107516' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sgsShbG2/pbuilderrc_LbqH --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sgsShbG2/b1 --logfile b1/build.log python-skbio_0.6.3-1.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2107516/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cython3 (>= 3), dh-sequence-python3, python3-all-dev, python3-biom-format, python3-setuptools, python3-numpy, python3-matplotlib, python3-cachecontrol, python3-decorator, python3-h5py, python3-pandas, python3-scipy, python3-ipython, python3-hdmedians, python3-sklearn, python3-natsort, python3-statsmodels, libssw-dev, sphinx-common, libsimde-dev, python3-numpy-dev, python3-sphinx, python3-sphinx-design, python3-sphinx-copybutton, python3-sphinx-sitemap, python3-pydata-sphinx-theme, python3-doc, python3-numpydoc, python-scipy-doc, python-biom-format-doc, python-pandas-doc, python-numpy-doc, python-matplotlib-doc, python-sklearn-doc, python-statsmodels-doc, python3-pytest, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cython3 (>= 3); however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-cachecontrol; however: Package python3-cachecontrol is not installed. pbuilder-satisfydepends-dummy depends on python3-decorator; however: Package python3-decorator is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-ipython; however: Package python3-ipython is not installed. pbuilder-satisfydepends-dummy depends on python3-hdmedians; however: Package python3-hdmedians is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-natsort; however: Package python3-natsort is not installed. pbuilder-satisfydepends-dummy depends on python3-statsmodels; however: Package python3-statsmodels is not installed. pbuilder-satisfydepends-dummy depends on libssw-dev; however: Package libssw-dev is not installed. pbuilder-satisfydepends-dummy depends on sphinx-common; however: Package sphinx-common is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy-dev; however: Package python3-numpy-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-design; however: Package python3-sphinx-design is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-copybutton; however: Package python3-sphinx-copybutton is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-sitemap; however: Package python3-sphinx-sitemap is not installed. pbuilder-satisfydepends-dummy depends on python3-pydata-sphinx-theme; however: Package python3-pydata-sphinx-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-doc; however: Package python3-doc is not installed. pbuilder-satisfydepends-dummy depends on python3-numpydoc; however: Package python3-numpydoc is not installed. pbuilder-satisfydepends-dummy depends on python-scipy-doc; however: Package python-scipy-doc is not installed. pbuilder-satisfydepends-dummy depends on python-biom-format-doc; however: Package python-biom-format-doc is not installed. pbuilder-satisfydepends-dummy depends on python-pandas-doc; however: Package python-pandas-doc is not installed. pbuilder-satisfydepends-dummy depends on python-numpy-doc; however: Package python-numpy-doc is not installed. pbuilder-satisfydepends-dummy depends on python-matplotlib-doc; however: Package python-matplotlib-doc is not installed. pbuilder-satisfydepends-dummy depends on python-sklearn-doc; however: Package python-sklearn-doc is not installed. pbuilder-satisfydepends-dummy depends on python-statsmodels-doc; however: Package python-statsmodels-doc is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-mathjax{a} fonts-open-sans{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libabsl20240722{a} libaec0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-hl-310{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap4{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-popper.js{a} libjs-requirejs{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsimde-dev{a} libssh2-1t64{a} libssw-dev{a} libssw0{a} libsvtav1enc2{a} libsz2{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyuv0{a} libzopfli1{a} m4{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} procps{a} python-babel-localedata{a} python-biom-format-doc{a} python-matplotlib-data{a} python-matplotlib-doc{a} python-numpy-doc{a} python-pandas-doc{a} python-scipy-doc{a} python-sklearn-doc{a} python-statsmodels-doc{a} python3{a} python3-accessible-pygments{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-asttokens{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-biom-format{a} python3-brotli{a} python3-bs4{a} python3-cachecontrol{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-doc{a} python3-docutils{a} python3-executing{a} python3-fonttools{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-ipython{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jedi{a} python3-jinja2{a} python3-joblib{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-matplotlib-inline{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-msgpack{a} python3-natsort{a} python3-numpy{a} python3-numpy-dev{a} python3-numpydoc{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parso{a} python3-patsy{a} python3-pexpect{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pydata-sphinx-theme{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytz{a} python3-requests{a} python3-roman{a} python3-roman-numerals{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-sphinx{a} python3-sphinx-copybutton{a} python3-sphinx-design{a} python3-sphinx-sitemap{a} python3-stack-data{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-sympy{a} python3-threadpoolctl{a} python3-tk{a} python3-traitlets{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-ufolib2{a} python3-urllib3{a} python3-wcwidth{a} python3-zipp{a} python3-zopfli{a} python3.13{a} python3.13-dev{a} python3.13-doc{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules linux-sysctl-defaults lynx node-jquery psmisc publicsuffix python3-bottleneck python3-colorama python3-cssselect python3-cvxopt python3-html5lib python3-numba python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-psutil python3-tables python3-tz python3-yaml shared-mime-info wget xdg-user-dirs 0 packages upgraded, 269 newly installed, 0 to remove and 0 not upgraded. Need to get 510 MB of archives. After unpacking 1978 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-2 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-2 [180 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-2 [893 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-6 [2447 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 architecture-properties amd64 0.2.6 [2336 B] Get: 35 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+25 [217 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get: 61 http://deb.debian.org/debian forky/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.14.2-1 [19.8 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.14.2-1 [8768 B] Get: 68 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 xml-core all 0.19 [20.1 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 fonts-lyx all 2.4.3-1 [190 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 fonts-open-sans all 1.11-2 [574 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 javascript-common all 12+nmu1 [4864 B] Get: 84 http://deb.debian.org/debian forky/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libaec0 amd64 1.1.4-2 [23.8 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libaom3 amd64 3.12.1-1 [1871 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 librav1e0.7 amd64 0.7.1-9+b2 [946 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 libyuv0 amd64 0.0.1916.20250814-1 [172 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libavif16 amd64 1.3.0-1 [135 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 98 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.15.0-1 [392 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 libgpg-error0 amd64 1.55-2 [88.1 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 libgcrypt20 amd64 1.11.2-2 [865 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-3 [75.1 kB] Get: 120 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 libsz2 amd64 1.1.4-2 [8108 B] Get: 122 http://deb.debian.org/debian forky/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 124 http://deb.debian.org/debian forky/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 125 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [519 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libjs-requirejs all 2.3.7+ds+~2.1.37-1 [196 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 133 http://deb.debian.org/debian forky/main amd64 libjs-sphinxdoc all 8.2.3-2 [27.3 kB] Get: 134 http://deb.debian.org/debian forky/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 135 http://deb.debian.org/debian forky/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 137 http://deb.debian.org/debian forky/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 libpython3.13 amd64 3.13.7-1 [2162 kB] Get: 140 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 libpython3.13-dev amd64 3.13.7-1 [5279 kB] Get: 142 http://deb.debian.org/debian forky/main amd64 libpython3-dev amd64 3.13.5-1 [10.4 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 libpython3-all-dev amd64 3.13.5-1 [1068 B] Get: 144 http://deb.debian.org/debian forky/main amd64 libqhull-r8.0 amd64 2020.2-7 [248 kB] Get: 145 http://deb.debian.org/debian forky/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 147 http://deb.debian.org/debian forky/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Get: 148 http://deb.debian.org/debian forky/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get: 149 http://deb.debian.org/debian forky/main amd64 libssw-dev amd64 1.1-15+b2 [24.6 kB] Get: 150 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 151 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.0-4 [346 kB] Get: 152 http://deb.debian.org/debian forky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 153 http://deb.debian.org/debian forky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 154 http://deb.debian.org/debian forky/main amd64 libxslt1.1 amd64 1.1.43-0.2 [155 kB] Get: 155 http://deb.debian.org/debian forky/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get: 156 http://deb.debian.org/debian forky/main amd64 node-fortawesome-fontawesome-free all 6.7.2+ds1-1 [1521 kB] Get: 157 http://deb.debian.org/debian forky/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 158 http://deb.debian.org/debian forky/main amd64 python-biom-format-doc all 2.1.16-1 [67.3 kB] Get: 159 http://deb.debian.org/debian forky/main amd64 python-matplotlib-data all 3.10.1+dfsg1-4 [2737 kB] Get: 160 http://deb.debian.org/debian forky/main amd64 python-matplotlib-doc all 3.10.1+dfsg1-4 [170 MB] Get: 161 http://deb.debian.org/debian forky/main amd64 python-numpy-doc all 1:2.2.4+ds-1 [5814 kB] Get: 162 http://deb.debian.org/debian forky/main amd64 python-pandas-doc all 2.2.3+dfsg-9 [10.8 MB] Get: 163 http://deb.debian.org/debian forky/main amd64 python-scipy-doc all 1.15.3-1 [24.6 MB] Get: 164 http://deb.debian.org/debian forky/main amd64 python-sklearn-doc all 1.4.2+dfsg-8 [52.4 MB] Get: 165 http://deb.debian.org/debian forky/main amd64 python-statsmodels-doc all 0.14.5+dfsg-1 [52.0 MB] Get: 166 http://deb.debian.org/debian forky/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 167 http://deb.debian.org/debian forky/main amd64 python3-accessible-pygments all 0.0.5-2 [1306 kB] Get: 168 http://deb.debian.org/debian forky/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 169 http://deb.debian.org/debian forky/main amd64 python3-all amd64 3.13.5-1 [1048 B] Get: 170 http://deb.debian.org/debian forky/main amd64 python3.13-dev amd64 3.13.7-1 [504 kB] Get: 171 http://deb.debian.org/debian forky/main amd64 python3-dev amd64 3.13.5-1 [26.1 kB] Get: 172 http://deb.debian.org/debian forky/main amd64 python3-all-dev amd64 3.13.5-1 [1068 B] Get: 173 http://deb.debian.org/debian forky/main amd64 python3-asttokens all 3.0.0-2 [20.2 kB] Get: 174 http://deb.debian.org/debian forky/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get: 175 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 176 http://deb.debian.org/debian forky/main amd64 python3-babel all 2.17.0-1 [117 kB] Get: 177 http://deb.debian.org/debian forky/main amd64 python3-h5py-serial amd64 3.13.0-1+b1 [1065 kB] Get: 178 http://deb.debian.org/debian forky/main amd64 python3-h5py all 3.13.0-1 [15.0 kB] Get: 179 http://deb.debian.org/debian forky/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 180 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 181 http://deb.debian.org/debian forky/main amd64 python3-pytz all 2025.2-3 [152 kB] Get: 182 http://deb.debian.org/debian forky/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4595 kB] Get: 183 http://deb.debian.org/debian forky/main amd64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get: 184 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 185 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.15.3-1 [16.3 MB] Get: 186 http://deb.debian.org/debian forky/main amd64 python3-biom-format amd64 2.1.16-1+b5 [151 kB] Get: 187 http://deb.debian.org/debian forky/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get: 188 http://deb.debian.org/debian forky/main amd64 python3-soupsieve all 2.7-2 [39.0 kB] Get: 189 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 190 http://deb.debian.org/debian forky/main amd64 python3-bs4 all 4.13.4-4 [167 kB] Get: 191 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 192 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 193 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 194 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 195 http://deb.debian.org/debian forky/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 196 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.32.4+dfsg-1 [72.4 kB] Get: 197 http://deb.debian.org/debian forky/main amd64 python3-msgpack amd64 1.0.3-3+b4 [84.5 kB] Get: 198 http://deb.debian.org/debian forky/main amd64 python3-cachecontrol all 0.14.3-1 [18.4 kB] Get: 199 http://deb.debian.org/debian forky/main amd64 python3-contourpy amd64 1.3.1-2 [215 kB] Get: 200 http://deb.debian.org/debian forky/main amd64 python3-cycler all 0.12.1-2 [9616 B] Get: 201 http://deb.debian.org/debian forky/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 202 http://deb.debian.org/debian forky/main amd64 python3.13-doc all 3.13.7-1 [15.5 MB] Get: 203 http://deb.debian.org/debian forky/main amd64 python3-doc all 3.13.5-1 [10.4 kB] Get: 204 http://deb.debian.org/debian forky/main amd64 python3-roman all 5.1-1 [11.0 kB] Get: 205 http://deb.debian.org/debian forky/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 206 http://deb.debian.org/debian forky/main amd64 python3-executing all 2.2.0-0.3 [24.6 kB] Get: 207 http://deb.debian.org/debian forky/main amd64 python3-platformdirs all 4.3.7-1 [16.6 kB] Get: 208 http://deb.debian.org/debian forky/main amd64 python3-fs all 2.4.16-7 [95.2 kB] Get: 209 http://deb.debian.org/debian forky/main amd64 python3-lxml amd64 6.0.1-1 [1434 kB] Get: 210 http://deb.debian.org/debian forky/main amd64 python3-lz4 amd64 4.4.4+dfsg-1 [25.4 kB] Get: 211 http://deb.debian.org/debian forky/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 212 http://deb.debian.org/debian forky/main amd64 python3-sympy all 1.14.0-2 [4228 kB] Get: 213 http://deb.debian.org/debian forky/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 214 http://deb.debian.org/debian forky/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get: 215 http://deb.debian.org/debian forky/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 216 http://deb.debian.org/debian forky/main amd64 python3-fonttools amd64 4.57.0-1 [1438 kB] Get: 217 http://deb.debian.org/debian forky/main amd64 python3-hdmedians amd64 0.14.2-6+b1 [121 kB] Get: 218 http://deb.debian.org/debian forky/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 219 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 220 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 221 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 222 http://deb.debian.org/debian forky/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 223 http://deb.debian.org/debian forky/main amd64 python3-parso all 0.8.4-1 [67.8 kB] Get: 224 http://deb.debian.org/debian forky/main amd64 python3-typeshed all 0.0~git20241223.ea91db2-4 [1531 kB] Get: 225 http://deb.debian.org/debian forky/main amd64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get: 226 http://deb.debian.org/debian forky/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 227 http://deb.debian.org/debian forky/main amd64 python3-matplotlib-inline all 0.1.7-1 [9032 B] Get: 228 http://deb.debian.org/debian forky/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 229 http://deb.debian.org/debian forky/main amd64 python3-prompt-toolkit all 3.0.51-4 [278 kB] Get: 230 http://deb.debian.org/debian forky/main amd64 python3-pure-eval all 0.2.3-1 [11.2 kB] Get: 231 http://deb.debian.org/debian forky/main amd64 python3-stack-data all 0.6.3-1 [21.6 kB] Get: 232 http://deb.debian.org/debian forky/main amd64 python3-ptyprocess all 0.7.0-6 [14.5 kB] Get: 233 http://deb.debian.org/debian forky/main amd64 python3-pexpect all 4.9-3 [55.6 kB] Get: 234 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 235 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 236 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 237 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 238 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 239 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 240 http://deb.debian.org/debian forky/main amd64 python3-ipython all 8.35.0-1 [576 kB] Get: 241 http://deb.debian.org/debian forky/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Get: 242 http://deb.debian.org/debian forky/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 243 http://deb.debian.org/debian forky/main amd64 python3-joblib all 1.4.2-5 [216 kB] Get: 244 http://deb.debian.org/debian forky/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get: 245 http://deb.debian.org/debian forky/main amd64 python3-pil amd64 11.3.0-1 [526 kB] Get: 246 http://deb.debian.org/debian forky/main amd64 python3.13-tk amd64 3.13.7-1 [108 kB] Get: 247 http://deb.debian.org/debian forky/main amd64 python3-tk amd64 3.13.5-1 [9604 B] Get: 248 http://deb.debian.org/debian forky/main amd64 python3-pil.imagetk amd64 11.3.0-1 [81.1 kB] Get: 249 http://deb.debian.org/debian forky/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 250 http://deb.debian.org/debian forky/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 251 http://deb.debian.org/debian forky/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-4 [23.8 MB] Get: 252 http://deb.debian.org/debian forky/main amd64 python3-natsort all 8.4.0-1 [38.9 kB] Get: 253 http://deb.debian.org/debian forky/main amd64 sphinx-common all 8.2.3-2 [618 kB] Get: 254 http://deb.debian.org/debian forky/main amd64 python3-roman-numerals all 3.1.0-2 [8740 B] Get: 255 http://deb.debian.org/debian forky/main amd64 python3-snowballstemmer all 3.0.1-1 [63.5 kB] Get: 256 http://deb.debian.org/debian forky/main amd64 python3-sphinx all 8.2.3-2 [477 kB] Get: 257 http://deb.debian.org/debian forky/main amd64 python3-numpydoc all 1.9.0-1 [52.3 kB] Get: 258 http://deb.debian.org/debian forky/main amd64 python3-patsy all 1.0.1-1 [172 kB] Get: 259 http://deb.debian.org/debian forky/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 260 http://deb.debian.org/debian forky/main amd64 python3-pydata-sphinx-theme all 0.16.1+dfsg-3 [917 kB] Get: 261 http://deb.debian.org/debian forky/main amd64 python3-pytest all 8.3.5-2 [250 kB] Get: 262 http://deb.debian.org/debian forky/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 263 http://deb.debian.org/debian forky/main amd64 python3-sklearn-lib amd64 1.4.2+dfsg-8 [3980 kB] Get: 264 http://deb.debian.org/debian forky/main amd64 python3-sklearn all 1.4.2+dfsg-8 [2248 kB] Get: 265 http://deb.debian.org/debian forky/main amd64 python3-sphinx-copybutton all 0.5.2-3 [18.1 kB] Get: 266 http://deb.debian.org/debian forky/main amd64 python3-sphinx-design all 0.6.1-1 [883 kB] Get: 267 http://deb.debian.org/debian forky/main amd64 python3-sphinx-sitemap all 2.6.0-1 [8508 B] Get: 268 http://deb.debian.org/debian forky/main amd64 python3-statsmodels-lib amd64 0.14.5+dfsg-1 [1631 kB] Get: 269 http://deb.debian.org/debian forky/main amd64 python3-statsmodels all 0.14.5+dfsg-1 [4827 kB] Fetched 510 MB in 19s (26.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20231 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_amd64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-2_all.deb ... Unpacking readline-common (8.3-2) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-2_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-2) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21246 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../002-libblas3_3.12.1-6_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-6) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../003-libgfortran5_15.2.0-2_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-2) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../004-liblapack3_3.12.1-6_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-6) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1_amd64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../006-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. 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Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../015-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../016-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../017-bsdextrautils_2.41.1-2_amd64.deb ... Unpacking bsdextrautils (2.41.1-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../018-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../019-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... 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Preparing to unpack .../026-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../027-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../028-libpng16-16t64_1.6.50-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.50-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../029-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../030-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../031-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... 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Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Sep 7 17:09:08 UTC 2025. Universal Time is now: Sun Sep 7 17:09:08 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.7.1-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libzopfli1 (1.0.3-3) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up liblzf1:amd64 (3.6-4+b3) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libimagequant0:amd64 (4.4.0-3) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-skbio-0.6.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-skbio_0.6.3-1_source.changes dpkg-buildpackage: info: source package python-skbio dpkg-buildpackage: info: source version 0.6.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-skbio-0.6.3' if [ "`find . -name "*.pyo"`" = "" ] ; then echo no need to clean up ; else dh_auto_clean; fi no need to clean up make[1]: Leaving directory '/build/reproducible-path/python-skbio-0.6.3' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/python-skbio-0.6.3' if [ -f simde-sse2.h.orig ] ; then mv simde-sse2.h.orig simde-sse2.h ; fi dh_clean find ./skbio -name '*.so' -delete find ./skbio -name '*.o' -delete rm -rf doc/build build doc/source/generated find doc -name *.doctree -delete rm -rf .pybuild rm -f scikit_bio.egg-info/PKG-INFO scikit_bio.egg-info/SOURCES.txt scikit_bio.egg-info/dependency_links.txt scikit_bio.egg-info/requires.txt scikit_bio.egg-info/top_level.txt rm -f skbio/alignment/_ssw_wrapper.c skbio/diversity/_phylogenetic.c skbio/stats/__subsample.c skbio/metadata/_intersection.c mv simde-sse2.h.orig simde-sse2.h || true mv: cannot stat 'simde-sse2.h.orig': No such file or directory make[1]: Leaving directory '/build/reproducible-path/python-skbio-0.6.3' debian/rules binary dh binary --with sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/python-skbio-0.6.3' mv simde-sse2.h simde-sse2.h.orig rm -f skbio/alignment/_ssw_wrapper.c skbio/diversity/_phylogenetic.c skbio/stats/__subsample.c skbio/metadata/_intersection.c dh_auto_configure I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/alignment/_ssw_wrapper.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/diversity/_phylogenetic.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/metadata/_intersection.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/stats/distance/_cutils.pyx tree = Parsing.p_module(s, pxd, full_module_name) performance hint: skbio/stats/distance/_cutils.pyx:398:5: Exception check on '_dist_euclidean' will always require the GIL to be acquired. Declare '_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:407:5: Exception check on '_norm_euclidean' will always require the GIL to be acquired. Declare '_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:414:5: Exception check on '_sum' will always require the GIL to be acquired. Declare '_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_0_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_0_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_0_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_1_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_1_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_1_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. warning: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/stats/ordination/_cutils.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/tree/_c_nj.pyx tree = Parsing.p_module(s, pxd, full_module_name) [1/7] Cythonizing skbio/alignment/_ssw_wrapper.pyx [2/7] Cythonizing skbio/diversity/_phylogenetic.pyx [3/7] Cythonizing skbio/metadata/_intersection.pyx [4/7] Cythonizing skbio/stats/distance/_cutils.pyx [5/7] Cythonizing skbio/stats/ordination/_cutils.pyx [6/7] Cythonizing skbio/tree/_c_me.pyx [7/7] Cythonizing skbio/tree/_c_nj.pyx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config make[1]: Leaving directory '/build/reproducible-path/python-skbio-0.6.3' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/python-skbio-0.6.3' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/alignment/_ssw_wrapper.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/diversity/_phylogenetic.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/metadata/_intersection.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/stats/distance/_cutils.pyx tree = Parsing.p_module(s, pxd, full_module_name) performance hint: skbio/stats/distance/_cutils.pyx:398:5: Exception check on '_dist_euclidean' will always require the GIL to be acquired. Declare '_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:407:5: Exception check on '_norm_euclidean' will always require the GIL to be acquired. Declare '_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:414:5: Exception check on '_sum' will always require the GIL to be acquired. Declare '_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_0_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_0_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_0_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_1_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_1_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_1_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. warning: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/stats/ordination/_cutils.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/tree/_c_nj.pyx tree = Parsing.p_module(s, pxd, full_module_name) [1/7] Cythonizing skbio/alignment/_ssw_wrapper.pyx [2/7] Cythonizing skbio/diversity/_phylogenetic.pyx [3/7] Cythonizing skbio/metadata/_intersection.pyx [4/7] Cythonizing skbio/stats/distance/_cutils.pyx [5/7] Cythonizing skbio/stats/ordination/_cutils.pyx [6/7] Cythonizing skbio/tree/_c_me.pyx [7/7] Cythonizing skbio/tree/_c_nj.pyx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio copying skbio/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio copying skbio/_base.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio copying skbio/test.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio copying skbio/workflow.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity copying skbio/diversity/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity copying skbio/diversity/_driver.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity copying skbio/diversity/_block.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity copying skbio/diversity/_util.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence copying skbio/sequence/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence copying skbio/sequence/_grammared_sequence.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence copying skbio/sequence/_nucleotide_mixin.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence copying skbio/sequence/_alphabet.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence copying skbio/sequence/_protein.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence copying skbio/sequence/_sequence.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence copying skbio/sequence/_repr.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence copying skbio/sequence/distance.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence copying skbio/sequence/_genetic_code.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence copying skbio/sequence/_substitution.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence copying skbio/sequence/_dna.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence copying skbio/sequence/_rna.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tests copying skbio/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tests copying skbio/tests/test_base.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tests copying skbio/tests/test_workflow.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table copying skbio/table/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table copying skbio/table/_base.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io copying skbio/io/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io copying skbio/io/registry.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io copying skbio/io/_warning.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io copying skbio/io/_iosources.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io copying skbio/io/_exception.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io copying skbio/io/util.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io copying skbio/io/_fileobject.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util copying skbio/util/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util copying skbio/util/_testing.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util copying skbio/util/_plotting.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util copying skbio/util/_decorator.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util copying skbio/util/_warning.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util copying skbio/util/_exception.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util copying skbio/util/_misc.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util copying skbio/util/_docstring.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats copying skbio/stats/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats copying skbio/stats/_subsample.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats copying skbio/stats/power.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats copying skbio/stats/gradient.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats copying skbio/stats/_misc.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats copying skbio/stats/composition.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment copying skbio/alignment/_tabular_msa.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment copying skbio/alignment/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment copying skbio/alignment/_path.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment copying skbio/alignment/_indexing.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment copying skbio/alignment/_repr.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment copying skbio/alignment/_pairwise.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding copying skbio/embedding/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding copying skbio/embedding/_protein.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding copying skbio/embedding/_embedding.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata copying skbio/metadata/_mixin.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata copying skbio/metadata/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata copying skbio/metadata/_testing.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata copying skbio/metadata/_metadata.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata copying skbio/metadata/missing.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata copying skbio/metadata/_enan.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata copying skbio/metadata/io.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata copying skbio/metadata/base.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata copying skbio/metadata/_repr.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata copying skbio/metadata/_interval.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree copying skbio/tree/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree copying skbio/tree/_tree.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree copying skbio/tree/_nj.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree copying skbio/tree/_upgma.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree copying skbio/tree/_utils.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree copying skbio/tree/_exception.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree copying skbio/tree/_me.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree copying skbio/tree/_majority_rule.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree copying skbio/tree/_compare.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/tests copying skbio/diversity/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/tests copying skbio/diversity/tests/test_block.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/tests copying skbio/diversity/tests/test_util.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/tests copying skbio/diversity/tests/test_driver.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta copying skbio/diversity/beta/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta copying skbio/diversity/beta/_unifrac.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/_lladser.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/_chao1.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/_base.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/_ace.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/_gini.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha copying skbio/diversity/alpha/_pd.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests copying skbio/diversity/beta/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests copying skbio/diversity/beta/tests/test_unifrac.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_pd.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_ace.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_base.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_gini.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_lladser.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_chao1.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_grammared_sequence.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_protein.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_rna.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_substitution.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_sequence.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_distance.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_alphabet.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_genetic_code.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_nucleotide_sequences.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests copying skbio/sequence/tests/test_dna.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table/tests copying skbio/table/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table/tests copying skbio/table/tests/test_base.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/emptyfile.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/stockholm.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/binary_dm.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/blast7.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/clustal.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/embed.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/_blast.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/embl.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/_base.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/phylip.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/taxdump.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/ordination.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/qseq.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/gff3.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/sample_metadata.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/blast6.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/fastq.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/fasta.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/lsmat.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/_sequence_feature_vocabulary.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/newick.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/genbank.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format copying skbio/io/format/biom.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests copying skbio/io/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests copying skbio/io/tests/test_util.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests copying skbio/io/tests/test_iosources.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests copying skbio/io/tests/test_registry.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_ordination.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_newick.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_sample_metadata.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_biom.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_genbank.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_base.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_clustal.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_fasta.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_emptyfile.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_blast7.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_stockholm.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_fastq.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_embl.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_lsmat.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_phylip.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_binary_dm.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_sequence_feature_vocabulary.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_gff3.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_qseq.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_blast6.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_taxdump.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests copying skbio/io/format/tests/test_embed.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests copying skbio/util/tests/test_warning.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests copying skbio/util/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests copying skbio/util/tests/test_decorator.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests copying skbio/util/tests/test_plotting.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests copying skbio/util/tests/test_testing.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests copying skbio/util/tests/test_misc.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests copying skbio/util/tests/test_docstring.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve copying skbio/stats/evolve/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve copying skbio/stats/evolve/_hommola.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/_correspondence_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/_principal_coordinate_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/_redundancy_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/_utils.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination copying skbio/stats/ordination/_ordination_results.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests copying skbio/stats/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests copying skbio/stats/tests/test_power.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests copying skbio/stats/tests/test_subsample.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests copying skbio/stats/tests/test_gradient.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests copying skbio/stats/tests/test_misc.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests copying skbio/stats/tests/test_composition.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance copying skbio/stats/distance/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance copying skbio/stats/distance/_anosim.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance copying skbio/stats/distance/_mantel.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance copying skbio/stats/distance/_bioenv.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance copying skbio/stats/distance/_base.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance copying skbio/stats/distance/_utils.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance copying skbio/stats/distance/_permdisp.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance copying skbio/stats/distance/_permanova.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve/tests copying skbio/stats/evolve/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve/tests copying skbio/stats/evolve/tests/test_hommola.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_correspondence_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_util.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_ordination_results.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_redundancy_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_mantel.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_permanova.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_anosim.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_base.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_bioenv.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_permdisp.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests copying skbio/alignment/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests copying skbio/alignment/tests/test_ssw.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests copying skbio/alignment/tests/test_path.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests copying skbio/alignment/tests/test_tabular_msa.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests copying skbio/alignment/tests/test_pairwise.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_lib copying skbio/alignment/_lib/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_lib creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/tests copying skbio/embedding/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/tests copying skbio/embedding/tests/test_protein.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/tests copying skbio/embedding/tests/test_embedding.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests copying skbio/metadata/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests copying skbio/metadata/tests/test_intersection.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests copying skbio/metadata/tests/test_interval.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests copying skbio/metadata/tests/test_enan.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests copying skbio/metadata/tests/test_io.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests copying skbio/metadata/tests/test_metadata_column.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests copying skbio/metadata/tests/test_missing.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests copying skbio/metadata/tests/test_metadata.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests copying skbio/metadata/tests/test_mixin.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests copying skbio/tree/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests copying skbio/tree/tests/test_compare.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests copying skbio/tree/tests/test_me.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests copying skbio/tree/tests/test_nj.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests copying skbio/tree/tests/test_majority_rule.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests copying skbio/tree/tests/test_tree.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests copying skbio/tree/tests/test_upgma.py -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt copying skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt copying skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt copying skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt copying skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/example_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/real_file_2 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/example_file.bz2 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/big5_file.bz2 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/big5_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/big5_file.gz -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/example_file.gz -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data copying skbio/io/tests/data/real_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace-split-id.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_gr_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error10 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_6_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_variable_length_ids -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error18 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_single_seq_long -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_single_record_lower -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/tsv_8_fields -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_vtab.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_custom_mixed_nans -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_custom_single_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_multi_seq_spaces -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_gf_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_header_too_long -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_footer -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_default_single_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_default_multi_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_w_beginning_whitespace -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_invalid_column_types -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_and_blast7_default -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_header -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_rna -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_filter -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_different_padding -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/tsv_10_fields -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_custom_multi_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embed2.txt.npy -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error8 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error17 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_constructed -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/sample-metadata-comments.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_nonstring_labels -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error9 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_diff_ids.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_max_width_1 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_seq_too_short -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multiple_trees -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_max_width_5 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/empty -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_multi_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multiple_references -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_single_record -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_unit_sep.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_feature_level_record -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error4 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_multi_records -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_duplicate_gr -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_del.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_extensive -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/whitespace_only -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_single_record -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_uniprot_record -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record_simple -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_reference_items -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_x -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error14 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_tabular_msa_different_type -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_header_too_short -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_metadata_only -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/prot.emb -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_2_seqs_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_all_data_types -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error13 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/sample-metadata-comments-comment-char-id.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/wrapping_as_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_gc_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_gibberish -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error22 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_double_seq.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_for_sniffer -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_dna -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_multi_seq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_no_data -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_space.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_references_mixed -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_data_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_multi_seq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_10_seqs -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_mixed_nans -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_custom_minimal -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error1 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_lane -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_duplicate_gc -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error15 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error23 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/sample-metadata-comments-mixed-case.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_invalid_data_type -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_tabular_msa_different_type -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error6 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_tabs.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_blank_lines -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_gs_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/wrapping_as_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_single_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error12 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/pdb_hits.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_spaces.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error24 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_blanks_end_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_max_width_1 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error2 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/sample-metadata-complete-types-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multiple_msa -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_blank_lines -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_example2_scores -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_differing_gr_data_length -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_example3_scores -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_y -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_header -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_differing_seq_lengths -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_writer_sanger_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_two_of_each_metadata -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_multi_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_single_seq_short -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_minimal -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_tile -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_feature_level_record_no_FT -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/tiny_embedding_file.npz -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_escape.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_bad_missing_directive -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_double_qual.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_ws_lines_between_records -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_null.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_dna_3_seqs -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_short_qual.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_no_header -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_whitespace_only_lines -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_default_single_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_multi_records -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record_lower -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_single_seq_sanger -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error11 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_blank_lines_between_records -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_two_chunks -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/taxdump_nodes.dmp -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_header -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_single_reference -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_references -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_invalid_type_in_column -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_tab.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_string -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_max_width_5 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record_upper -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_missing_header -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_missing_locus_name -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error16 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error19 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_blank_lines_between_records -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error21 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_seq_too_long -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_plus.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_single_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_read -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_default_multi_line -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error3 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_seq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_no_data -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_3_seqs_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_bad_wrong_columns -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/longreads_as_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/taxdump_names.dmp -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_minimal -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/sample-metadata-empty-rows.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_legacy_format -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error5 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error20 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_extensive_mixed -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/prot_vec.emb -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_long_qual.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_seq.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_single_record_upper -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_multi_record -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_data_only -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_seq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/embed1.txt.npy -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error7 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_invalid_differing_fields -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_no_qual.fastq -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/gr_wo_msg_raw -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/vr_real_raw -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/vr_raw -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/cr_data_out -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/gr_wo_msg_out -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/cr_data_raw -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/gr_w_msg_raw -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/cr_no_data_out -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/vr_real_out -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/vr_out -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/cr_no_data_raw -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data copying skbio/stats/tests/data/gr_w_msg_out -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_X -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_X -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_Y -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_Y -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/L&L_CA_data -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/varespec.csv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_skbio -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/varechem.csv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/frameSeries_dm.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm2.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm4.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm3.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm_reordered.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/exp_results.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/df.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/df_extra_column.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/frameSeries_grouping.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/tests/data copying skbio/embedding/tests/data/embed1.txt.npy -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/tests/data creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/header-only.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/duplicate-ids-with-whitespace.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/column-name-conflicts-with-id-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/invalid-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/empty-id.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/whitespace-only-column-name.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/unrecognized-column-type.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/id-conflicts-with-id-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/non-utf-8.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/types-directive-non-numeric.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/qiime1-empty.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/header-only-with-comments-and-empty-rows.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/duplicate-column-names-with-whitespace.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/whitespace-only-id.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/duplicate-ids.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/duplicate-directives.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/unrecognized-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/directive-before-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/directive-longer-than-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/data-longer-than-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/empty-column-name.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/simple-utf-16le.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/empty-file -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/comments-and-empty-rows-only.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/simple-utf-16be.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/duplicate-column-names.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/directive-after-directives-section.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid copying skbio/metadata/tests/data/invalid/missing-unknown-scheme.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid creating /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/qiita-preparation-information.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/empty-rows.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/single-id.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/numeric-column.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/unix-line-endings.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/missing-data.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/minimal.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/simple.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/override-insdc.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/BOM-simple.txt -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/windows-line-endings.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/empty-types-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/single-column.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/complete-types-directive_w_sk.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/no-newline-at-eof.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/simple.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/all-cells-padded.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/no-id-or-column-name-type-cast.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/biom-observation-metadata.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/leading-trailing-whitespace.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/mac-line-endings.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/comments.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/qiita-sample-information.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/trailing-columns.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/partial-types-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/jagged-trailing-columns.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/jagged.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/column-order.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/missing-insdc.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/complete-types-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/simple-with-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/recommended-ids.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/case-insensitive-types-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/no-columns.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/non-standard-characters.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/qiime1.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/missing-insdc-no-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid copying skbio/metadata/tests/data/valid/rows-shorter-than-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid running build_ext building 'skbio.metadata._intersection' extension creating build/temp.linux-x86_64-cpython-313/skbio/metadata x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/metadata/_intersection.c -o build/temp.linux-x86_64-cpython-313/skbio/metadata/_intersection.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/metadata/_intersection.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/_intersection.cpython-313-x86_64-linux-gnu.so building 'skbio.alignment._ssw_wrapper' extension creating build/temp.linux-x86_64-cpython-313/skbio/alignment x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -Iskbio/alignment -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/alignment/_ssw_wrapper.c -o build/temp.linux-x86_64-cpython-313/skbio/alignment/_ssw_wrapper.o In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from skbio/alignment/_ssw_wrapper.c:1273: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/alignment/_ssw_wrapper.o -L/usr/lib/x86_64-linux-gnu -lssw -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_ssw_wrapper.cpython-313-x86_64-linux-gnu.so building 'skbio.tree._c_nj' extension creating build/temp.linux-x86_64-cpython-313/skbio/tree x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/tree/_c_nj.c -o build/temp.linux-x86_64-cpython-313/skbio/tree/_c_nj.o -I. -fopenmp-simd -DSIMDE_ENABLE_OPENMP -fopenmp x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/tree/_c_nj.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_c_nj.cpython-313-x86_64-linux-gnu.so -fopenmp building 'skbio.tree._c_me' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/tree/_c_me.c -o build/temp.linux-x86_64-cpython-313/skbio/tree/_c_me.o -I. -fopenmp-simd -DSIMDE_ENABLE_OPENMP -fopenmp x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/tree/_c_me.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_c_me.cpython-313-x86_64-linux-gnu.so -fopenmp building 'skbio.diversity._phylogenetic' extension creating build/temp.linux-x86_64-cpython-313/skbio/diversity x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/diversity/_phylogenetic.c -o build/temp.linux-x86_64-cpython-313/skbio/diversity/_phylogenetic.o In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from skbio/diversity/_phylogenetic.c:1249: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/diversity/_phylogenetic.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/_phylogenetic.cpython-313-x86_64-linux-gnu.so building 'skbio.stats.ordination._cutils' extension creating build/temp.linux-x86_64-cpython-313/skbio/stats/ordination x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/stats/ordination/_cutils.c -o build/temp.linux-x86_64-cpython-313/skbio/stats/ordination/_cutils.o -I. -fopenmp-simd -DSIMDE_ENABLE_OPENMP -fopenmp x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/stats/ordination/_cutils.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/_cutils.cpython-313-x86_64-linux-gnu.so -fopenmp building 'skbio.stats.distance._cutils' extension creating build/temp.linux-x86_64-cpython-313/skbio/stats/distance x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/stats/distance/_cutils.c -o build/temp.linux-x86_64-cpython-313/skbio/stats/distance/_cutils.o -I. -fopenmp-simd -DSIMDE_ENABLE_OPENMP -fopenmp In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from skbio/stats/distance/_cutils.c:1249: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/stats/distance/_cutils.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/_cutils.cpython-313-x86_64-linux-gnu.so -fopenmp make[1]: Leaving directory '/build/reproducible-path/python-skbio-0.6.3' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/python-skbio-0.6.3' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/alignment/_ssw_wrapper.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/diversity/_phylogenetic.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/metadata/_intersection.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/stats/distance/_cutils.pyx tree = Parsing.p_module(s, pxd, full_module_name) performance hint: skbio/stats/distance/_cutils.pyx:398:5: Exception check on '_dist_euclidean' will always require the GIL to be acquired. Declare '_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:407:5: Exception check on '_norm_euclidean' will always require the GIL to be acquired. Declare '_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:414:5: Exception check on '_sum' will always require the GIL to be acquired. Declare '_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_0_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_0_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_0_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_1_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_1_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_1_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. warning: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/stats/ordination/_cutils.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/tree/_c_nj.pyx tree = Parsing.p_module(s, pxd, full_module_name) [1/7] Cythonizing skbio/alignment/_ssw_wrapper.pyx [2/7] Cythonizing skbio/diversity/_phylogenetic.pyx [3/7] Cythonizing skbio/metadata/_intersection.pyx [4/7] Cythonizing skbio/stats/distance/_cutils.pyx [5/7] Cythonizing skbio/stats/ordination/_cutils.pyx [6/7] Cythonizing skbio/tree/_c_me.pyx [7/7] Cythonizing skbio/tree/_c_nj.pyx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py running build_ext building 'skbio.metadata._intersection' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/metadata/_intersection.c -o build/temp.linux-x86_64-cpython-313/skbio/metadata/_intersection.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/metadata/_intersection.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/_intersection.cpython-313-x86_64-linux-gnu.so building 'skbio.alignment._ssw_wrapper' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -Iskbio/alignment -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/alignment/_ssw_wrapper.c -o build/temp.linux-x86_64-cpython-313/skbio/alignment/_ssw_wrapper.o In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from skbio/alignment/_ssw_wrapper.c:1273: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/alignment/_ssw_wrapper.o -L/usr/lib/x86_64-linux-gnu -lssw -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_ssw_wrapper.cpython-313-x86_64-linux-gnu.so building 'skbio.tree._c_nj' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/tree/_c_nj.c -o build/temp.linux-x86_64-cpython-313/skbio/tree/_c_nj.o -I. -fopenmp-simd -DSIMDE_ENABLE_OPENMP -fopenmp x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/tree/_c_nj.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_c_nj.cpython-313-x86_64-linux-gnu.so -fopenmp building 'skbio.tree._c_me' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/tree/_c_me.c -o build/temp.linux-x86_64-cpython-313/skbio/tree/_c_me.o -I. -fopenmp-simd -DSIMDE_ENABLE_OPENMP -fopenmp x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/tree/_c_me.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_c_me.cpython-313-x86_64-linux-gnu.so -fopenmp building 'skbio.diversity._phylogenetic' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/diversity/_phylogenetic.c -o build/temp.linux-x86_64-cpython-313/skbio/diversity/_phylogenetic.o In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from skbio/diversity/_phylogenetic.c:1249: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/diversity/_phylogenetic.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/_phylogenetic.cpython-313-x86_64-linux-gnu.so building 'skbio.stats.ordination._cutils' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/stats/ordination/_cutils.c -o build/temp.linux-x86_64-cpython-313/skbio/stats/ordination/_cutils.o -I. -fopenmp-simd -DSIMDE_ENABLE_OPENMP -fopenmp x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/stats/ordination/_cutils.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/_cutils.cpython-313-x86_64-linux-gnu.so -fopenmp building 'skbio.stats.distance._cutils' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/stats/distance/_cutils.c -o build/temp.linux-x86_64-cpython-313/skbio/stats/distance/_cutils.o -I. -fopenmp-simd -DSIMDE_ENABLE_OPENMP -fopenmp In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from skbio/stats/distance/_cutils.c:1249: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/stats/distance/_cutils.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/_cutils.cpython-313-x86_64-linux-gnu.so -fopenmp PYTHONPATH=/build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build \ http_proxy='127.0.0.1:9' MPLCONFIGDIR=.\ python3 `which sphinx-build` -b html -d doc/build/doctrees doc/source doc/build/html Running Sphinx v8.2.3 loading translations [en]... done making output directory... done [autosummary] generating autosummary for: alignment.rst, diversity.rst, embedding.rst, index.rst, io.rst, metadata.rst, sequence.rst, stats.rst, table.rst, tree.rst, util.rst, workflow.rst [autosummary] generating autosummary for: /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.AlignPath.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.AlignmentStructure.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.PairAlignPath.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.StripedSmithWaterman.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.TabularMSA.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.global_pairwise_align.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.global_pairwise_align_nucleotide.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.global_pairwise_align_protein.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.local_pairwise_align.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.local_pairwise_align_nucleotide.rst, ..., /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.util.find_duplicates.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.util.get_data_path.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.util.get_rng.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.util.overrides.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.util.params_aliased.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.util.register_aliases.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.util.safe_md5.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.workflow.Workflow.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.workflow.method.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.workflow.requires.rst [autosummary] generating autosummary for: /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.AlignPath.from_bits.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.AlignPath.from_coordinates.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.AlignPath.from_indices.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.AlignPath.from_tabular.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.AlignPath.to_bits.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.AlignPath.to_coordinates.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.AlignPath.to_indices.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.AlignmentStructure.is_zero_based.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.AlignmentStructure.set_zero_based.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.alignment.PairAlignPath.from_bits.rst, ..., /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.tree.TreeNode.total_length.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.tree.TreeNode.traverse.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.tree.TreeNode.unpack.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.tree.TreeNode.unpack_by_func.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.tree.TreeNode.unroot.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.tree.TreeNode.unrooted_copy.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.tree.TreeNode.unrooted_deepcopy.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.tree.TreeNode.unrooted_move.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.tree.TreeNode.write.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.workflow.Workflow.initialize_state.rst [autosummary] generating autosummary for: /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.io.registry.Format.reader.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.io.registry.Format.sniffer.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.io.registry.Format.writer.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.io.registry.IORegistry.add_format.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.io.registry.IORegistry.create_format.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.io.registry.IORegistry.get_reader.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.io.registry.IORegistry.get_sniffer.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.io.registry.IORegistry.get_writer.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.io.registry.IORegistry.list_read_formats.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.io.registry.IORegistry.list_write_formats.rst, ..., /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.stats.distance.DistanceMatrix.permute.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.stats.distance.DistanceMatrix.to_series.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.stats.gradient.CategoryResults.to_files.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.stats.gradient.GradientANOVA.get_trajectories.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.stats.gradient.GradientANOVAResults.to_files.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.stats.gradient.GroupResults.to_files.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.stats.ordination.OrdinationResults.plot.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.stats.ordination.OrdinationResults.read.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.stats.ordination.OrdinationResults.rename.rst, /build/reproducible-path/python-skbio-0.6.3/doc/source/generated/skbio.stats.ordination.OrdinationResults.write.rst loading intersphinx inventory 'python' from /usr/share/doc/python3/html/objects.inv ... loading intersphinx inventory 'numpy' from /usr/share/doc/python-numpy/html/objects.inv ... loading intersphinx inventory 'scipy' from /usr/share/doc/python-scipy-doc/html/objects.inv ... loading intersphinx inventory 'matplotlib' from /usr/share/doc/python-matplotlib-doc/html/objects.inv ... loading intersphinx inventory 'pandas' from /usr/share/doc/python-pandas-doc/html/objects.inv ... loading intersphinx inventory 'sklearn' from /usr/share/doc/python-sklearn-doc/html/objects.inv ... loading intersphinx inventory 'statsmodels' from /usr/share/doc/python-statsmodels-doc/html/objects.inv ... loading intersphinx inventory 'biom-format' from /usr/share/doc/python-biom-format-doc/html/objects.inv ... building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 12 source files that are out of date updating environment: [new config] 515 added, 0 changed, 0 removed reading sources... [ 0%] alignment reading sources... [ 0%] diversity reading sources... [ 1%] embedding reading sources... [ 1%] generated/skbio.alignment.AlignPath reading sources... [ 1%] generated/skbio.alignment.AlignPath.from_bits reading sources... [ 1%] generated/skbio.alignment.AlignPath.from_coordinates reading sources... [ 1%] generated/skbio.alignment.AlignPath.from_indices reading sources... [ 2%] generated/skbio.alignment.AlignPath.from_tabular reading sources... [ 2%] generated/skbio.alignment.AlignPath.to_bits reading sources... [ 2%] generated/skbio.alignment.AlignPath.to_coordinates reading sources... [ 2%] generated/skbio.alignment.AlignPath.to_indices reading sources... [ 2%] generated/skbio.alignment.AlignmentStructure reading sources... [ 3%] generated/skbio.alignment.AlignmentStructure.is_zero_based reading sources... [ 3%] generated/skbio.alignment.AlignmentStructure.set_zero_based reading sources... [ 3%] generated/skbio.alignment.PairAlignPath reading sources... [ 3%] generated/skbio.alignment.PairAlignPath.from_bits reading sources... [ 3%] generated/skbio.alignment.PairAlignPath.from_cigar reading sources... [ 3%] generated/skbio.alignment.PairAlignPath.to_bits reading sources... [ 4%] generated/skbio.alignment.PairAlignPath.to_cigar reading sources... [ 4%] generated/skbio.alignment.StripedSmithWaterman reading sources... [ 4%] generated/skbio.alignment.TabularMSA reading sources... [ 4%] generated/skbio.alignment.TabularMSA.append reading sources... [ 4%] generated/skbio.alignment.TabularMSA.consensus reading sources... [ 5%] generated/skbio.alignment.TabularMSA.conservation reading sources... [ 5%] generated/skbio.alignment.TabularMSA.extend reading sources... [ 5%] generated/skbio.alignment.TabularMSA.from_dict reading sources... [ 5%] generated/skbio.alignment.TabularMSA.from_path_seqs reading sources... [ 5%] generated/skbio.alignment.TabularMSA.gap_frequencies reading sources... [ 6%] generated/skbio.alignment.TabularMSA.iter_positions reading sources... [ 6%] generated/skbio.alignment.TabularMSA.join reading sources... [ 6%] generated/skbio.alignment.TabularMSA.read reading sources... [ 6%] generated/skbio.alignment.TabularMSA.reassign_index reading sources... [ 6%] generated/skbio.alignment.TabularMSA.sort reading sources... [ 7%] generated/skbio.alignment.TabularMSA.to_dict reading sources... [ 7%] generated/skbio.alignment.TabularMSA.write reading sources... [ 7%] generated/skbio.alignment.global_pairwise_align reading sources... [ 7%] generated/skbio.alignment.global_pairwise_align_nucleotide reading sources... [ 7%] generated/skbio.alignment.global_pairwise_align_protein reading sources... [ 8%] generated/skbio.alignment.local_pairwise_align reading sources... [ 8%] generated/skbio.alignment.local_pairwise_align_nucleotide reading sources... [ 8%] generated/skbio.alignment.local_pairwise_align_protein reading sources... [ 8%] generated/skbio.alignment.local_pairwise_align_ssw reading sources... [ 8%] generated/skbio.alignment.make_identity_substitution_matrix reading sources... [ 9%] generated/skbio.diversity.alpha reading sources... [ 9%] generated/skbio.diversity.alpha.ace reading sources... [ 9%] generated/skbio.diversity.alpha.berger_parker_d reading sources... [ 9%] generated/skbio.diversity.alpha.brillouin_d reading sources... [ 9%] generated/skbio.diversity.alpha.chao1 reading sources... [ 10%] generated/skbio.diversity.alpha.chao1_ci reading sources... [ 10%] generated/skbio.diversity.alpha.dominance reading sources... [ 10%] generated/skbio.diversity.alpha.doubles reading sources... [ 10%] generated/skbio.diversity.alpha.enspie reading sources... [ 10%] generated/skbio.diversity.alpha.esty_ci reading sources... [ 10%] generated/skbio.diversity.alpha.faith_pd reading sources... [ 11%] generated/skbio.diversity.alpha.fisher_alpha reading sources... [ 11%] generated/skbio.diversity.alpha.gini_index reading sources... [ 11%] generated/skbio.diversity.alpha.goods_coverage reading sources... [ 11%] generated/skbio.diversity.alpha.heip_e reading sources... [ 11%] generated/skbio.diversity.alpha.hill reading sources... [ 12%] generated/skbio.diversity.alpha.inv_simpson reading sources... [ 12%] generated/skbio.diversity.alpha.kempton_taylor_q reading sources... [ 12%] generated/skbio.diversity.alpha.lladser_ci reading sources... [ 12%] generated/skbio.diversity.alpha.lladser_pe reading sources... [ 12%] generated/skbio.diversity.alpha.margalef reading sources... [ 13%] generated/skbio.diversity.alpha.mcintosh_d reading sources... [ 13%] generated/skbio.diversity.alpha.mcintosh_e reading sources... [ 13%] generated/skbio.diversity.alpha.menhinick reading sources... [ 13%] generated/skbio.diversity.alpha.michaelis_menten_fit reading sources... [ 13%] generated/skbio.diversity.alpha.observed_features reading sources... [ 14%] generated/skbio.diversity.alpha.osd reading sources... [ 14%] generated/skbio.diversity.alpha.phydiv reading sources... [ 14%] generated/skbio.diversity.alpha.pielou_e reading sources... [ 14%] generated/skbio.diversity.alpha.renyi reading sources... [ 14%] generated/skbio.diversity.alpha.robbins reading sources... [ 15%] generated/skbio.diversity.alpha.shannon reading sources... [ 15%] generated/skbio.diversity.alpha.simpson reading sources... [ 15%] generated/skbio.diversity.alpha.simpson_d reading sources... [ 15%] generated/skbio.diversity.alpha.simpson_e reading sources... [ 15%] generated/skbio.diversity.alpha.singles reading sources... [ 16%] generated/skbio.diversity.alpha.sobs reading sources... [ 16%] generated/skbio.diversity.alpha.strong reading sources... [ 16%] generated/skbio.diversity.alpha.tsallis reading sources... [ 16%] generated/skbio.diversity.alpha_diversity reading sources... [ 16%] generated/skbio.diversity.beta reading sources... [ 17%] generated/skbio.diversity.beta.unweighted_unifrac reading sources... [ 17%] generated/skbio.diversity.beta.weighted_unifrac reading sources... [ 17%] generated/skbio.diversity.beta_diversity reading sources... [ 17%] generated/skbio.diversity.block_beta_diversity reading sources... [ 17%] generated/skbio.diversity.get_alpha_diversity_metrics reading sources... [ 17%] generated/skbio.diversity.get_beta_diversity_metrics reading sources... [ 18%] generated/skbio.diversity.partial_beta_diversity reading sources... [ 18%] generated/skbio.diversity.vectorize_counts_and_tree reading sources... [ 18%] generated/skbio.embedding.Embedding reading sources... [ 18%] generated/skbio.embedding.Embedding.bytes reading sources... [ 18%] generated/skbio.embedding.Embedding.read reading sources... [ 19%] generated/skbio.embedding.Embedding.write reading sources... [ 19%] generated/skbio.embedding.EmbeddingVector reading sources... [ 19%] generated/skbio.embedding.ProteinEmbedding reading sources... [ 19%] generated/skbio.embedding.ProteinVector reading sources... [ 19%] generated/skbio.embedding.SequenceEmbedding reading sources... [ 20%] generated/skbio.embedding.SequenceVector reading sources... [ 20%] generated/skbio.embedding.embed_vec_to_dataframe reading sources... [ 20%] generated/skbio.embedding.embed_vec_to_distances reading sources... [ 20%] generated/skbio.embedding.embed_vec_to_numpy reading sources... [ 20%] generated/skbio.embedding.embed_vec_to_ordination reading sources... [ 21%] generated/skbio.io.format.binary_dm reading sources... [ 21%] generated/skbio.io.format.biom reading sources... [ 21%] generated/skbio.io.format.blast6 reading sources... [ 21%] generated/skbio.io.format.blast7 reading sources... [ 21%] generated/skbio.io.format.clustal reading sources... [ 22%] generated/skbio.io.format.embed reading sources... [ 22%] generated/skbio.io.format.embl reading sources... [ 22%] generated/skbio.io.format.fasta reading sources... [ 22%] generated/skbio.io.format.fastq reading sources... [ 22%] generated/skbio.io.format.genbank reading sources... [ 23%] generated/skbio.io.format.gff3 reading sources... [ 23%] generated/skbio.io.format.lsmat reading sources... [ 23%] generated/skbio.io.format.newick reading sources... [ 23%] generated/skbio.io.format.ordination reading sources... [ 23%] generated/skbio.io.format.phylip reading sources... [ 23%] generated/skbio.io.format.qseq reading sources... [ 24%] generated/skbio.io.format.sample_metadata reading sources... [ 24%] generated/skbio.io.format.stockholm reading sources... [ 24%] generated/skbio.io.format.taxdump reading sources... [ 24%] generated/skbio.io.registry reading sources... [ 24%] generated/skbio.io.registry.Format reading sources... [ 25%] generated/skbio.io.registry.Format.reader reading sources... [ 25%] generated/skbio.io.registry.Format.sniffer reading sources... [ 25%] generated/skbio.io.registry.Format.writer reading sources... [ 25%] generated/skbio.io.registry.IORegistry reading sources... [ 25%] generated/skbio.io.registry.IORegistry.add_format reading sources... [ 26%] generated/skbio.io.registry.IORegistry.create_format reading sources... [ 26%] generated/skbio.io.registry.IORegistry.get_reader reading sources... [ 26%] generated/skbio.io.registry.IORegistry.get_sniffer reading sources... [ 26%] generated/skbio.io.registry.IORegistry.get_writer reading sources... [ 26%] generated/skbio.io.registry.IORegistry.list_read_formats reading sources... [ 27%] generated/skbio.io.registry.IORegistry.list_write_formats reading sources... [ 27%] generated/skbio.io.registry.IORegistry.read reading sources... [ 27%] generated/skbio.io.registry.IORegistry.remove_format reading sources... [ 27%] generated/skbio.io.registry.IORegistry.sniff reading sources... [ 27%] generated/skbio.io.registry.IORegistry.write reading sources... [ 28%] generated/skbio.io.registry.create_format reading sources... [ 28%] generated/skbio.io.registry.read reading sources... [ 28%] generated/skbio.io.registry.sniff reading sources... [ 28%] generated/skbio.io.registry.write reading sources... [ 28%] generated/skbio.io.util reading sources... [ 29%] generated/skbio.io.util.open reading sources... [ 29%] generated/skbio.io.util.open_file reading sources... [ 29%] generated/skbio.io.util.open_files reading sources... [ 29%] generated/skbio.metadata.CategoricalMetadataColumn reading sources... [ 29%] generated/skbio.metadata.Interval reading sources... [ 30%] generated/skbio.metadata.Interval.drop reading sources... [ 30%] generated/skbio.metadata.IntervalMetadata reading sources... [ 30%] generated/skbio.metadata.IntervalMetadata.add reading sources... [ 30%] generated/skbio.metadata.IntervalMetadata.concat reading sources... [ 30%] generated/skbio.metadata.IntervalMetadata.drop reading sources... [ 30%] generated/skbio.metadata.IntervalMetadata.merge reading sources... [ 31%] generated/skbio.metadata.IntervalMetadata.query reading sources... [ 31%] generated/skbio.metadata.IntervalMetadata.read reading sources... [ 31%] generated/skbio.metadata.IntervalMetadata.sort reading sources... [ 31%] generated/skbio.metadata.IntervalMetadata.write reading sources... [ 31%] generated/skbio.metadata.IntervalMetadataMixin reading sources... [ 32%] generated/skbio.metadata.IntervalMetadataMixin.has_interval_metadata reading sources... [ 32%] generated/skbio.metadata.MetadataColumn reading sources... [ 32%] generated/skbio.metadata.MetadataColumn.drop_missing_values reading sources... [ 32%] generated/skbio.metadata.MetadataColumn.filter_ids reading sources... [ 32%] generated/skbio.metadata.MetadataColumn.get_ids reading sources... [ 33%] generated/skbio.metadata.MetadataColumn.get_missing reading sources... [ 33%] generated/skbio.metadata.MetadataColumn.get_value reading sources... [ 33%] generated/skbio.metadata.MetadataColumn.has_missing_values reading sources... [ 33%] generated/skbio.metadata.MetadataColumn.to_dataframe reading sources... [ 33%] generated/skbio.metadata.MetadataColumn.to_series reading sources... [ 34%] generated/skbio.metadata.MetadataMixin reading sources... [ 34%] generated/skbio.metadata.MetadataMixin.has_metadata reading sources... [ 34%] generated/skbio.metadata.NumericMetadataColumn reading sources... [ 34%] generated/skbio.metadata.PositionalMetadataMixin reading sources... [ 34%] generated/skbio.metadata.PositionalMetadataMixin.has_positional_metadata reading sources... [ 35%] generated/skbio.metadata.SampleMetadata reading sources... [ 35%] generated/skbio.metadata.SampleMetadata.filter_columns reading sources... [ 35%] generated/skbio.metadata.SampleMetadata.filter_ids reading sources... [ 35%] generated/skbio.metadata.SampleMetadata.get_column reading sources... [ 35%] generated/skbio.metadata.SampleMetadata.get_ids reading sources... [ 36%] generated/skbio.metadata.SampleMetadata.load reading sources... [ 36%] generated/skbio.metadata.SampleMetadata.merge reading sources... [ 36%] generated/skbio.metadata.SampleMetadata.to_dataframe reading sources... [ 36%] generated/skbio.sequence.DNA reading sources... [ 36%] generated/skbio.sequence.DNA.find_motifs reading sources... [ 37%] generated/skbio.sequence.DNA.read reading sources... [ 37%] generated/skbio.sequence.DNA.transcribe reading sources... [ 37%] generated/skbio.sequence.DNA.translate reading sources... [ 37%] generated/skbio.sequence.DNA.translate_six_frames reading sources... [ 37%] generated/skbio.sequence.DNA.write reading sources... [ 37%] generated/skbio.sequence.GeneticCode reading sources... [ 38%] generated/skbio.sequence.GeneticCode.from_ncbi reading sources... [ 38%] generated/skbio.sequence.GeneticCode.translate reading sources... [ 38%] generated/skbio.sequence.GeneticCode.translate_six_frames reading sources... [ 38%] generated/skbio.sequence.GrammaredSequence reading sources... [ 38%] generated/skbio.sequence.GrammaredSequence.definites reading sources... [ 39%] generated/skbio.sequence.GrammaredSequence.degap reading sources... [ 39%] generated/skbio.sequence.GrammaredSequence.degenerates reading sources... [ 39%] generated/skbio.sequence.GrammaredSequence.expand_degenerates reading sources... [ 39%] generated/skbio.sequence.GrammaredSequence.find_motifs reading sources... [ 39%] generated/skbio.sequence.GrammaredSequence.gaps reading sources... [ 40%] generated/skbio.sequence.GrammaredSequence.has_definites reading sources... [ 40%] generated/skbio.sequence.GrammaredSequence.has_degenerates reading sources... [ 40%] generated/skbio.sequence.GrammaredSequence.has_gaps reading sources... [ 40%] generated/skbio.sequence.GrammaredSequence.has_nondegenerates reading sources... [ 40%] generated/skbio.sequence.GrammaredSequence.nondegenerates reading sources... [ 41%] generated/skbio.sequence.GrammaredSequence.to_definites reading sources... [ 41%] generated/skbio.sequence.GrammaredSequence.to_regex reading sources... [ 41%] generated/skbio.sequence.NucleotideMixin reading sources... [ 41%] generated/skbio.sequence.NucleotideMixin.complement reading sources... [ 41%] generated/skbio.sequence.NucleotideMixin.gc_content reading sources... [ 42%] generated/skbio.sequence.NucleotideMixin.gc_frequency reading sources... [ 42%] generated/skbio.sequence.NucleotideMixin.is_reverse_complement reading sources... [ 42%] generated/skbio.sequence.NucleotideMixin.reverse_complement reading sources... [ 42%] generated/skbio.sequence.Protein reading sources... [ 42%] generated/skbio.sequence.Protein.find_motifs reading sources... [ 43%] generated/skbio.sequence.Protein.has_stops reading sources... [ 43%] generated/skbio.sequence.Protein.read reading sources... [ 43%] generated/skbio.sequence.Protein.stops reading sources... [ 43%] generated/skbio.sequence.Protein.write reading sources... [ 43%] generated/skbio.sequence.RNA reading sources... [ 43%] generated/skbio.sequence.RNA.find_motifs reading sources... [ 44%] generated/skbio.sequence.RNA.read reading sources... [ 44%] generated/skbio.sequence.RNA.reverse_transcribe reading sources... [ 44%] generated/skbio.sequence.RNA.translate reading sources... [ 44%] generated/skbio.sequence.RNA.translate_six_frames reading sources... [ 44%] generated/skbio.sequence.RNA.write reading sources... [ 45%] generated/skbio.sequence.Sequence reading sources... [ 45%] generated/skbio.sequence.Sequence.concat reading sources... [ 45%] generated/skbio.sequence.Sequence.count reading sources... [ 45%] generated/skbio.sequence.Sequence.distance reading sources... [ 45%] generated/skbio.sequence.Sequence.find_with_regex reading sources... [ 46%] generated/skbio.sequence.Sequence.frequencies reading sources... [ 46%] generated/skbio.sequence.Sequence.index reading sources... [ 46%] generated/skbio.sequence.Sequence.iter_contiguous reading sources... [ 46%] generated/skbio.sequence.Sequence.iter_kmers reading sources... [ 46%] generated/skbio.sequence.Sequence.kmer_frequencies reading sources... [ 47%] generated/skbio.sequence.Sequence.lowercase reading sources... [ 47%] generated/skbio.sequence.Sequence.match_frequency reading sources... [ 47%] generated/skbio.sequence.Sequence.matches reading sources... [ 47%] generated/skbio.sequence.Sequence.mismatch_frequency reading sources... [ 47%] generated/skbio.sequence.Sequence.mismatches reading sources... [ 48%] generated/skbio.sequence.Sequence.read reading sources... [ 48%] generated/skbio.sequence.Sequence.replace reading sources... [ 48%] generated/skbio.sequence.Sequence.to_indices reading sources... [ 48%] generated/skbio.sequence.Sequence.write reading sources... [ 48%] generated/skbio.sequence.SubstitutionMatrix reading sources... [ 49%] generated/skbio.sequence.SubstitutionMatrix.by_name reading sources... [ 49%] generated/skbio.sequence.SubstitutionMatrix.from_dict reading sources... [ 49%] generated/skbio.sequence.SubstitutionMatrix.get_names reading sources... [ 49%] generated/skbio.sequence.SubstitutionMatrix.identity reading sources... [ 49%] generated/skbio.sequence.SubstitutionMatrix.to_dict reading sources... [ 50%] generated/skbio.sequence.distance reading sources... [ 50%] generated/skbio.sequence.distance.hamming reading sources... [ 50%] generated/skbio.sequence.distance.kmer_distance reading sources... [ 50%] generated/skbio.stats.composition reading sources... [ 50%] generated/skbio.stats.composition.alr reading sources... [ 50%] generated/skbio.stats.composition.alr_inv reading sources... [ 51%] generated/skbio.stats.composition.ancom reading sources... [ 51%] generated/skbio.stats.composition.centralize reading sources... [ 51%] generated/skbio.stats.composition.closure reading sources... [ 51%] generated/skbio.stats.composition.clr reading sources... [ 51%] generated/skbio.stats.composition.clr_inv reading sources... [ 52%] generated/skbio.stats.composition.dirmult_ttest reading sources... [ 52%] generated/skbio.stats.composition.ilr reading sources... [ 52%] generated/skbio.stats.composition.ilr_inv reading sources... [ 52%] generated/skbio.stats.composition.inner reading sources... [ 52%] generated/skbio.stats.composition.multi_replace reading sources... [ 53%] generated/skbio.stats.composition.pairwise_vlr reading sources... [ 53%] generated/skbio.stats.composition.perturb reading sources... [ 53%] generated/skbio.stats.composition.perturb_inv reading sources... [ 53%] generated/skbio.stats.composition.power reading sources... [ 53%] generated/skbio.stats.composition.sbp_basis reading sources... [ 54%] generated/skbio.stats.composition.tree_basis reading sources... [ 54%] generated/skbio.stats.composition.vlr reading sources... [ 54%] generated/skbio.stats.distance reading sources... [ 54%] generated/skbio.stats.distance.DissimilarityMatrix reading sources... [ 54%] generated/skbio.stats.distance.DissimilarityMatrix.between reading sources... [ 55%] generated/skbio.stats.distance.DissimilarityMatrix.copy reading sources... [ 55%] generated/skbio.stats.distance.DissimilarityMatrix.filter reading sources... [ 55%] generated/skbio.stats.distance.DissimilarityMatrix.from_iterable reading sources... [ 55%] generated/skbio.stats.distance.DissimilarityMatrix.index reading sources... [ 55%] generated/skbio.stats.distance.DissimilarityMatrix.plot reading sources... [ 56%] generated/skbio.stats.distance.DissimilarityMatrix.read reading sources... [ 56%] generated/skbio.stats.distance.DissimilarityMatrix.redundant_form reading sources... [ 56%] generated/skbio.stats.distance.DissimilarityMatrix.rename reading sources... [ 56%] generated/skbio.stats.distance.DissimilarityMatrix.to_data_frame reading sources... 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[ 67%] generated/skbio.stats.subsample_counts reading sources... [ 67%] generated/skbio.table.Table /usr/lib/python3/dist-packages/numpydoc/docscrape.py:420: UserWarning: Unknown section Paramaters in the docstring of Table in /usr/lib/python3/dist-packages/biom/table.py. self[section] = content reading sources... [ 67%] generated/skbio.table.Table.add_group_metadata reading sources... [ 67%] generated/skbio.table.Table.add_metadata reading sources... [ 67%] generated/skbio.table.Table.align_to reading sources... [ 68%] generated/skbio.table.Table.align_to_dataframe reading sources... [ 68%] generated/skbio.table.Table.align_tree reading sources... [ 68%] generated/skbio.table.Table.collapse reading sources... [ 68%] generated/skbio.table.Table.concat reading sources... [ 68%] generated/skbio.table.Table.copy reading sources... [ 69%] generated/skbio.table.Table.data reading sources... [ 69%] generated/skbio.table.Table.del_metadata reading sources... 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[ 78%] generated/skbio.table.example_table /usr/lib/python3/dist-packages/numpydoc/docscrape.py:420: UserWarning: Unknown section Paramaters in the docstring of Table self[section] = content reading sources... [ 78%] generated/skbio.tree.TreeNode reading sources... [ 78%] generated/skbio.tree.TreeNode.ancestors reading sources... [ 78%] generated/skbio.tree.TreeNode.append reading sources... [ 79%] generated/skbio.tree.TreeNode.ascii_art reading sources... [ 79%] generated/skbio.tree.TreeNode.assign_ids reading sources... [ 79%] generated/skbio.tree.TreeNode.assign_supports reading sources... [ 79%] generated/skbio.tree.TreeNode.bifurcate reading sources... [ 79%] generated/skbio.tree.TreeNode.bipart reading sources... [ 80%] generated/skbio.tree.TreeNode.biparts reading sources... [ 80%] generated/skbio.tree.TreeNode.cache_attr reading sources... [ 80%] generated/skbio.tree.TreeNode.clear_caches reading sources... 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[ 98%] generated/skbio.workflow.Workflow reading sources... [ 98%] generated/skbio.workflow.Workflow.initialize_state reading sources... [ 98%] generated/skbio.workflow.method reading sources... [ 98%] generated/skbio.workflow.requires reading sources... [ 98%] index reading sources... [ 99%] io reading sources... [ 99%] metadata reading sources... [ 99%] sequence reading sources... [ 99%] stats reading sources... [ 99%] table /usr/lib/python3/dist-packages/numpydoc/docscrape.py:420: UserWarning: Unknown section Paramaters in the docstring of Table in /usr/lib/python3/dist-packages/biom/table.py. self[section] = content /usr/lib/python3/dist-packages/numpydoc/docscrape.py:420: UserWarning: Unknown section Paramaters in the docstring of Table self[section] = content reading sources... [100%] tree reading sources... [100%] util reading sources... [100%] workflow looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/python-skbio-0.6.3/doc/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-skbio-0.6.3/doc/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-skbio-0.6.3/doc/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-skbio-0.6.3/doc/build/html/_static/copybutton.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 0%] alignment writing output... [ 0%] diversity writing output... [ 1%] embedding writing output... [ 1%] generated/skbio.alignment.AlignPath writing output... 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[ 3%] generated/skbio.alignment.PairAlignPath.to_bits writing output... [ 4%] generated/skbio.alignment.PairAlignPath.to_cigar writing output... [ 4%] generated/skbio.alignment.StripedSmithWaterman writing output... [ 4%] generated/skbio.alignment.TabularMSA writing output... [ 4%] generated/skbio.alignment.TabularMSA.append writing output... [ 4%] generated/skbio.alignment.TabularMSA.consensus writing output... [ 5%] generated/skbio.alignment.TabularMSA.conservation writing output... [ 5%] generated/skbio.alignment.TabularMSA.extend writing output... [ 5%] generated/skbio.alignment.TabularMSA.from_dict writing output... [ 5%] generated/skbio.alignment.TabularMSA.from_path_seqs writing output... [ 5%] generated/skbio.alignment.TabularMSA.gap_frequencies writing output... [ 6%] generated/skbio.alignment.TabularMSA.iter_positions writing output... [ 6%] generated/skbio.alignment.TabularMSA.join writing output... [ 6%] generated/skbio.alignment.TabularMSA.read writing output... 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[ 75%] ../build/plot_directive/diversity-3_02.png copying images... [ 88%] ../build/plot_directive/generated/skbio-stats-distance-DissimilarityMatrix-plot-1.png copying images... [100%] ../build/plot_directive/generated/skbio-stats-ordination-OrdinationResults-plot-1.png dumping search index in English (code: en)... done dumping object inventory... done sphinx-sitemap: sitemap.xml was generated for URL https://scikit.bio in /build/reproducible-path/python-skbio-0.6.3/doc/build/html/sitemap.xml build succeeded. The HTML pages are in doc/build/html. make[1]: Leaving directory '/build/reproducible-path/python-skbio-0.6.3' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/python-skbio-0.6.3' echo No testing for the -doc package No testing for the -doc package make[1]: Leaving directory '/build/reproducible-path/python-skbio-0.6.3' dh_auto_test -O--buildsystem=pybuild -Npython-skbio-doc I: pybuild base:311: cd /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build; python3.13 -m skbio.test ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.3.5, pluggy-1.6.0 rootdir: /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 3090 items skbio/alignment/__init__.py . [ 0%] skbio/alignment/_path.py ......... [ 0%] skbio/alignment/_tabular_msa.py ........................ [ 1%] skbio/alignment/tests/test_pairwise.py ......................... [ 1%] skbio/alignment/tests/test_path.py ................. [ 2%] skbio/alignment/tests/test_ssw.py ........................... [ 3%] skbio/alignment/tests/test_tabular_msa.py .............................. [ 4%] ........................................................................ [ 6%] ........................................................................ [ 8%] ........................................................................ [ 11%] ........................................................................ [ 13%] ........................................................................ [ 15%] ............ [ 16%] skbio/diversity/__init__.py . [ 16%] skbio/diversity/alpha/_pd.py . [ 16%] skbio/diversity/alpha/tests/test_ace.py .. [ 16%] skbio/diversity/alpha/tests/test_base.py .............................. [ 17%] skbio/diversity/alpha/tests/test_chao1.py ... [ 17%] skbio/diversity/alpha/tests/test_gini.py .... [ 17%] skbio/diversity/alpha/tests/test_lladser.py ............ [ 18%] skbio/diversity/alpha/tests/test_pd.py ................ [ 18%] skbio/diversity/beta/_unifrac.py .. [ 18%] skbio/diversity/beta/tests/test_unifrac.py ............................ [ 19%] skbio/diversity/tests/test_block.py ........... [ 19%] skbio/diversity/tests/test_driver.py ................................... [ 21%] ... [ 21%] skbio/diversity/tests/test_util.py ................ [ 21%] skbio/embedding/_protein.py .. [ 21%] skbio/embedding/tests/test_embedding.py ................... [ 22%] skbio/embedding/tests/test_protein.py .............. [ 22%] skbio/io/__init__.py . [ 22%] skbio/io/format/biom.py . [ 22%] skbio/io/format/blast6.py . [ 22%] skbio/io/format/blast7.py . [ 22%] skbio/io/format/clustal.py . [ 22%] skbio/io/format/embed.py . [ 22%] skbio/io/format/embl.py . [ 23%] skbio/io/format/fasta.py . [ 23%] skbio/io/format/fastq.py . [ 23%] skbio/io/format/genbank.py . [ 23%] skbio/io/format/gff3.py . [ 23%] skbio/io/format/newick.py . [ 23%] skbio/io/format/ordination.py . [ 23%] skbio/io/format/phylip.py . [ 23%] skbio/io/format/qseq.py . [ 23%] skbio/io/format/stockholm.py . [ 23%] skbio/io/format/taxdump.py . [ 23%] skbio/io/format/tests/test_base.py ................................ [ 24%] skbio/io/format/tests/test_binary_dm.py ......... [ 24%] skbio/io/format/tests/test_biom.py ... [ 24%] skbio/io/format/tests/test_blast6.py ........... [ 25%] skbio/io/format/tests/test_blast7.py .............. [ 25%] skbio/io/format/tests/test_clustal.py ............. [ 25%] skbio/io/format/tests/test_embed.py ......... [ 26%] skbio/io/format/tests/test_embl.py ............................... [ 27%] skbio/io/format/tests/test_emptyfile.py .. [ 27%] skbio/io/format/tests/test_fasta.py ................. [ 27%] skbio/io/format/tests/test_fastq.py ............... [ 28%] skbio/io/format/tests/test_genbank.py ..................... [ 29%] skbio/io/format/tests/test_gff3.py ........................ [ 29%] skbio/io/format/tests/test_lsmat.py ....... [ 30%] skbio/io/format/tests/test_newick.py ....... [ 30%] skbio/io/format/tests/test_ordination.py ..... [ 30%] skbio/io/format/tests/test_phylip.py ....... [ 30%] skbio/io/format/tests/test_qseq.py ...... [ 30%] skbio/io/format/tests/test_sample_metadata.py .... [ 31%] skbio/io/format/tests/test_sequence_feature_vocabulary.py .... [ 31%] skbio/io/format/tests/test_stockholm.py ................................ [ 32%] ........................................... [ 33%] skbio/io/format/tests/test_taxdump.py ...... [ 33%] skbio/io/registry.py ... [ 33%] skbio/io/tests/test_iosources.py .......... [ 34%] skbio/io/tests/test_registry.py ........................................ [ 35%] ............................................... [ 36%] skbio/io/tests/test_util.py .........................................sss [ 38%] sssssssssssssssssssssssssss............................................. [ 40%] ........................................................................ [ 43%] ................................ [ 44%] skbio/io/util.py . [ 44%] skbio/metadata/_interval.py ... [ 44%] skbio/metadata/_mixin.py .... [ 44%] skbio/metadata/tests/test_enan.py ... [ 44%] skbio/metadata/tests/test_intersection.py ............... [ 44%] skbio/metadata/tests/test_interval.py .................................. [ 46%] ..................................... [ 47%] skbio/metadata/tests/test_io.py ........................................ [ 48%] .................................................................. [ 50%] skbio/metadata/tests/test_metadata.py .................................. [ 51%] .......................... [ 52%] skbio/metadata/tests/test_metadata_column.py ........................... [ 53%] .............................................. [ 54%] skbio/metadata/tests/test_missing.py ................ [ 55%] skbio/metadata/tests/test_mixin.py ..................................... [ 56%] ............................................................. [ 58%] skbio/sequence/__init__.py . [ 58%] skbio/sequence/_dna.py .... [ 58%] skbio/sequence/_genetic_code.py ..... [ 58%] skbio/sequence/_grammared_sequence.py ............. [ 59%] skbio/sequence/_nucleotide_mixin.py ..... [ 59%] skbio/sequence/_protein.py ... [ 59%] skbio/sequence/_rna.py .... [ 59%] skbio/sequence/_sequence.py .............................. [ 60%] skbio/sequence/_substitution.py .... [ 60%] skbio/sequence/distance.py .. [ 60%] skbio/sequence/tests/test_alphabet.py ..... [ 61%] skbio/sequence/tests/test_distance.py .......................... [ 61%] skbio/sequence/tests/test_dna.py ... [ 62%] skbio/sequence/tests/test_genetic_code.py .......................... [ 62%] skbio/sequence/tests/test_grammared_sequence.py ........................ [ 63%] ......................... [ 64%] skbio/sequence/tests/test_nucleotide_sequences.py ...................... [ 65%] ....... [ 65%] skbio/sequence/tests/test_protein.py ........... [ 65%] skbio/sequence/tests/test_rna.py ... [ 65%] skbio/sequence/tests/test_sequence.py .................................. [ 66%] ........................................................................ [ 69%] ........................................................................ [ 71%] ........................................................................ [ 73%] .............. [ 74%] skbio/sequence/tests/test_substitution.py ........ [ 74%] skbio/stats/_subsample.py .. [ 74%] skbio/stats/composition.py ..................... [ 75%] skbio/stats/distance/__init__.py . [ 75%] skbio/stats/distance/_anosim.py . [ 75%] skbio/stats/distance/_base.py ...... [ 75%] skbio/stats/distance/_bioenv.py . [ 75%] skbio/stats/distance/_mantel.py .. [ 75%] skbio/stats/distance/_permdisp.py . [ 75%] skbio/stats/distance/tests/test_anosim.py .... [ 75%] skbio/stats/distance/tests/test_base.py ................................ [ 76%] ................................................................. [ 79%] skbio/stats/distance/tests/test_bioenv.py ................. [ 79%] skbio/stats/distance/tests/test_mantel.py .............................. [ 80%] .............. [ 81%] skbio/stats/distance/tests/test_permanova.py ..... [ 81%] skbio/stats/distance/tests/test_permdisp.py .............. [ 81%] skbio/stats/evolve/_hommola.py . [ 81%] skbio/stats/evolve/tests/test_hommola.py ............ [ 82%] skbio/stats/gradient.py . [ 82%] skbio/stats/ordination/__init__.py . [ 82%] skbio/stats/ordination/_ordination_results.py . [ 82%] skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py . [ 82%] ..... [ 82%] skbio/stats/ordination/tests/test_correspondence_analysis.py ........ [ 82%] skbio/stats/ordination/tests/test_ordination_results.py ............. [ 83%] skbio/stats/ordination/tests/test_principal_coordinate_analysis.py ..... [ 83%] ............. [ 83%] skbio/stats/ordination/tests/test_redundancy_analysis.py .... [ 83%] skbio/stats/ordination/tests/test_util.py .......... [ 84%] skbio/stats/power.py .... [ 84%] skbio/stats/tests/test_composition.py .................................. [ 85%] ....................................................... [ 87%] skbio/stats/tests/test_gradient.py .......................... [ 87%] skbio/stats/tests/test_misc.py ... [ 88%] skbio/stats/tests/test_power.py ........................................ [ 89%] ... [ 89%] skbio/stats/tests/test_subsample.py ............ [ 89%] skbio/table/tests/test_base.py . [ 89%] skbio/tests/test_base.py ..... [ 90%] skbio/tests/test_workflow.py ................. [ 90%] skbio/tree/__init__.py . [ 90%] skbio/tree/_compare.py ... [ 90%] skbio/tree/_majority_rule.py . [ 90%] skbio/tree/_me.py ... [ 90%] skbio/tree/_nj.py . [ 90%] skbio/tree/_tree.py .................................................... [ 92%] ................... [ 93%] skbio/tree/_upgma.py . [ 93%] skbio/tree/tests/test_compare.py ... [ 93%] skbio/tree/tests/test_majority_rule.py ...... [ 93%] skbio/tree/tests/test_me.py ................................. [ 94%] skbio/tree/tests/test_nj.py ........ [ 94%] skbio/tree/tests/test_tree.py .......................................... [ 96%] ....................................................... [ 97%] skbio/tree/tests/test_upgma.py .. [ 98%] skbio/util/_misc.py .. [ 98%] skbio/util/tests/test_decorator.py ............ [ 98%] skbio/util/tests/test_docstring.py .. [ 98%] skbio/util/tests/test_misc.py .................... [ 99%] skbio/util/tests/test_plotting.py ...... [ 99%] skbio/util/tests/test_testing.py ............... [ 99%] skbio/util/tests/test_warning.py ... [ 99%] skbio/workflow.py . [100%] =============================== warnings summary =============================== skbio/alignment/__init__.py::skbio.alignment /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:40: DeprecationWarning: `local_pairwise_align_ssw` has been deprecated since 0.5.8. It will be removed in favor of more general purpose and performant aligners. Additional details at https://github.com/scikit-bio/scikit-bio/issues/1814. warn(message, warning) skbio/alignment/__init__.py::skbio.alignment /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_pairwise.py:222: PendingDeprecationWarning: You're using skbio's python implementation of Smith-Waterman alignment. This will be very slow (e.g., thousands of times slower) than skbio.alignment.local_pairwise_align_ssw. warn( skbio/alignment/__init__.py::skbio.alignment /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:40: DeprecationWarning: `make_identity_substitution_matrix` has been deprecated since 0.4.0. It has been replaced by the SubstitutionMatrix class. Additional details at: https://github.com/scikit-bio/scikit-bio/pull/1913. warn(message, warning) skbio/alignment/__init__.py::skbio.alignment /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_pairwise.py:537: PendingDeprecationWarning: You're using skbio's python implementation of Needleman-Wunsch alignment. This is known to be very slow (e.g., thousands of times slower than a native C implementation). We'll be adding a faster version soon (see https://github.com/scikit-bio/scikit-bio/issues/254 to track progress on this). warn( skbio/alignment/tests/test_tabular_msa.py::TestGapFrequencies::test_no_positions_relative /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_tabular_msa.py:1652: RuntimeWarning: invalid value encountered in divide gap_freqs /= length skbio/diversity/tests/test_block.py::ParallelBetaDiversity::test_block_beta_diversity /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:40: DeprecationWarning: `partial_beta_diversity` has been deprecated since 0.5.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. warn(message, warning) skbio/diversity/tests/test_driver.py::BetaDiversityTests::test_available_metrics skbio/diversity/tests/test_driver.py::BetaDiversityTests::test_qualitative_bug_issue_1549 skbio/diversity/tests/test_driver.py::BetaDiversityTests::test_qualitative_bug_issue_1549 /usr/lib/python3/dist-packages/scipy/spatial/distance.py:2322: DeprecationWarning: The sokalmichener metric is deprecated since SciPy 1.15.0 and will be removed in SciPy 1.17.0. Replace usage of 'sokalmichener(u, v)' with 'rogerstanimoto(u, v)'. return pdist_fn(X, out=out, **kwargs) skbio/metadata/tests/test_io.py: 10 warnings /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/io.py:411: FutureWarning: Downcasting behavior in `replace` is deprecated and will be removed in a future version. To retain the old behavior, explicitly call `result.infer_objects(copy=False)`. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` series = series.replace("", np.nan) skbio/metadata/tests/test_io.py::TestSave::test_numeric_metadata_column_insdc_missing skbio/metadata/tests/test_metadata_column.py::TestToSeries::test_encode_missing_true skbio/metadata/tests/test_metadata_column.py::TestToDataframe::test_encode_missing_true /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/_metadata.py:1106: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '['missing']' has dtype incompatible with float64, please explicitly cast to a compatible dtype first. series[missing.index] = missing skbio/metadata/tests/test_missing.py::TestISNDC::test_roundtrip_all_missing_object skbio/metadata/tests/test_missing.py::TestOmitted::test_roundtrip_all_missing_object /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/test_missing.py:53: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pdt.assert_series_equal(missing, series.astype(object)) skbio/metadata/tests/test_missing.py::TestOmitted::test_roundtrip_bool skbio/metadata/tests/test_missing.py::TestOmitted::test_roundtrip_string /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/test_missing.py:31: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pdt.assert_series_equal(missing, series[1:].astype(object)) skbio/sequence/_grammared_sequence.py::skbio.sequence._grammared_sequence.GrammaredSequence.has_nondegenerates skbio/sequence/_grammared_sequence.py::skbio.sequence._grammared_sequence.GrammaredSequence.has_nondegenerates skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_grammared_sequence.py:643: DeprecationWarning: has_nondegenerates is deprecated as of 0.5.0 warn("has_nondegenerates is deprecated as of 0.5.0", DeprecationWarning) skbio/sequence/_grammared_sequence.py::skbio.sequence._grammared_sequence.GrammaredSequence.nondegenerates skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_grammared_sequence.py:576: DeprecationWarning: nondenengerates is deprecated as of 0.5.0. warn("nondenengerates is deprecated as of 0.5.0.", DeprecationWarning) skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars skbio/sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars skbio/sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_grammared_sequence.py:313: DeprecationWarning: nondegenerate_chars is deprecated as of 0.5.0 warn("nondegenerate_chars is deprecated as of 0.5.0", DeprecationWarning) skbio/sequence/tests/test_sequence.py::TestSequence::test_frequencies_empty_sequence /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_sequence.py:1829: RuntimeWarning: invalid value encountered in divide obs_counts = obs_counts / len(self) skbio/stats/distance/_permdisp.py::skbio.stats.distance._permdisp.permdisp skbio/stats/distance/_permdisp.py::skbio.stats.distance._permdisp.permdisp skbio/stats/distance/_permdisp.py::skbio.stats.distance._permdisp.permdisp skbio/stats/distance/_permdisp.py::skbio.stats.distance._permdisp.permdisp /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:214: RuntimeWarning: The result contains negative eigenvalues that are large in magnitude, which may suggest result inaccuracy. See Notes for details. The negative-most eigenvalue is -0.11904505999598314 whereas the largest positive one is 0.6920448057121844. warn( skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:249: RuntimeWarning: invalid value encountered in divide proportion_explained = eigvals / sum_eigenvalues skbio/stats/power.py::skbio.stats.power :1: ConstantInputWarning: An input array is constant; the correlation coefficient is not defined. skbio/stats/tests/test_composition.py::AncomTests::test_ancom_alternative_test /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:586: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable. res = hypotest_fun_out(*samples, **kwds) skbio/stats/tests/test_composition.py::AncomTests::test_ancom_fail_multiple_groups /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/composition.py:1632: DeprecationWarning: You are passing as positional arguments: axis. Please change your invocation to use keyword arguments. From SciPy 1.17.0, passing these as positional arguments will result in an error. return test(*[x[cats == k] for k in cs]) skbio/stats/tests/test_composition.py::VLRTests::test_pairwise_vlr /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/composition.py:970: RuntimeWarning: divide by zero encountered in log X_log = np.log(mat) skbio/stats/tests/test_composition.py::VLRTests::test_pairwise_vlr /usr/lib/python3/dist-packages/numpy/lib/_function_base_impl.py:2888: RuntimeWarning: invalid value encountered in subtract X -= avg[:, None] skbio/stats/tests/test_composition.py::VLRTests::test_vlr /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/composition.py:854: RuntimeWarning: divide by zero encountered in log x = np.log(x) skbio/stats/tests/test_composition.py::VLRTests::test_vlr /usr/lib/python3/dist-packages/numpy/_core/_methods.py:191: RuntimeWarning: invalid value encountered in subtract x = asanyarray(arr - arrmean) skbio/stats/tests/test_gradient.py::GradientTests::test_weight_by_vector /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/gradient.py:167: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '6.357142857142857' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. trajectories.loc[idx] = ( skbio/tree/__init__.py::skbio.tree /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:40: FutureWarning: The default behavior of `root_at_midpoint` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. warn(message, warning) skbio/tree/__init__.py::skbio.tree /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:40: FutureWarning: The default behavior of `root_at` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. warn(message, warning) skbio/tree/__init__.py::skbio.tree /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:40: FutureWarning: The default behavior of `unrooted_copy` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `branch_attrs={"length", "support"}, root_name=None`. warn(message, warning) skbio/tree/__init__.py::skbio.tree /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:40: FutureWarning: The default behavior of `compare_cophenet` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `ignore_self=True`. warn(message, warning) skbio/tree/tests/test_nj.py::NjTests::test_nj_trivial /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:40: DeprecationWarning: `nj` has been deprecated since 0.6.3. `result_constructor` is deprecated and will be removed in a future release. warn(message, warning) skbio/tree/tests/test_nj.py::NjTests::test_nj_zero_branch_length /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:47: DeprecationWarning: `nj`'s parameter `disallow_negative_branch_length` was renamed to `neg_as_zero` in 0.6.3. The old name is kept as an alias but is deprecated. warn(message, warning) skbio/tree/tests/test_tree.py::TreeTests::test_compare_cophenet /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:47: DeprecationWarning: `compare_cophenet`'s parameter `shuffle_f` was renamed to `shuffler` in 0.6.3. The old name is kept as an alias but is deprecated. warn(message, warning) skbio/tree/tests/test_tree.py::TreeTests::test_compare_cophenet /usr/lib/python3/dist-packages/scipy/spatial/distance.py:685: RuntimeWarning: invalid value encountered in scalar divide dist = 1.0 - uv / math.sqrt(uu * vv) skbio/tree/tests/test_tree.py::TreeTests::test_compare_cophenet_new /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:47: DeprecationWarning: `compare_cophenet`'s parameter `dist_f` was renamed to `metric` in 0.6.3. The old name is kept as an alias but is deprecated. warn(message, warning) skbio/tree/tests/test_tree.py::TreeTests::test_compare_subsets /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:47: DeprecationWarning: `compare_subsets`'s parameter `exclude_absent_taxa` was renamed to `shared_only` in 0.6.3. The old name is kept as an alias but is deprecated. warn(message, warning) skbio/tree/tests/test_tree.py::TreeTests::test_deepcopy /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:40: DeprecationWarning: `deepcopy` has been deprecated since 0.6.2. Use `copy` instead. warn(message, warning) skbio/tree/tests/test_tree.py::TreeTests::test_lca /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:47: DeprecationWarning: `lca`'s parameter `tipnames` was renamed to `nodes` in 0.6.3. The old name is kept as an alias but is deprecated. warn(message, warning) skbio/tree/tests/test_tree.py::TreeTests::test_shuffle /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:47: DeprecationWarning: `shuffle`'s parameter `shuffle_f` was renamed to `shuffler` in 0.6.3. The old name is kept as an alias but is deprecated. warn(message, warning) skbio/tree/tests/test_tree.py::TreeTests::test_total_length /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:47: DeprecationWarning: `total_length`'s parameter `tip_subset` was renamed to `nodes` in 0.6.3. The old name is kept as an alias but is deprecated. warn(message, warning) skbio/tree/tests/test_tree.py::TreeTests::test_unrooted_deepcopy /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py:40: DeprecationWarning: `unrooted_deepcopy` has been deprecated since 0.6.2. Because it generates a redundant copy of the tree. Use `unrooted_copy` instead. warn(message, warning) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========== 3060 passed, 30 skipped, 80 warnings in 170.90s (0:02:50) =========== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/alignment/_ssw_wrapper.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/diversity/_phylogenetic.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/metadata/_intersection.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/stats/distance/_cutils.pyx tree = Parsing.p_module(s, pxd, full_module_name) performance hint: skbio/stats/distance/_cutils.pyx:398:5: Exception check on '_dist_euclidean' will always require the GIL to be acquired. Declare '_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:407:5: Exception check on '_norm_euclidean' will always require the GIL to be acquired. Declare '_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:414:5: Exception check on '_sum' will always require the GIL to be acquired. Declare '_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_0_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_0_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_0_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_0_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_0_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:350:36: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:357:24: Exception check after calling '__pyx_fuse_1_sum' will always require the GIL to be acquired. Declare '__pyx_fuse_1_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:381:35: Exception check after calling '__pyx_fuse_1_norm_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. performance hint: skbio/stats/distance/_cutils.pyx:389:34: Exception check after calling '__pyx_fuse_1_dist_euclidean' will always require the GIL to be acquired. Declare '__pyx_fuse_1_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. warning: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:403:15: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:403:22: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:14: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:411:21: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access warning: skbio/stats/distance/_cutils.pyx:418:18: Use boundscheck(False) for faster access /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/stats/ordination/_cutils.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-skbio-0.6.3/skbio/tree/_c_nj.pyx tree = Parsing.p_module(s, pxd, full_module_name) [1/7] Cythonizing skbio/alignment/_ssw_wrapper.pyx [2/7] Cythonizing skbio/diversity/_phylogenetic.pyx [3/7] Cythonizing skbio/metadata/_intersection.pyx [4/7] Cythonizing skbio/stats/distance/_cutils.pyx [5/7] Cythonizing skbio/stats/ordination/_cutils.pyx [6/7] Cythonizing skbio/tree/_c_me.pyx [7/7] Cythonizing skbio/tree/_c_nj.pyx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext building 'skbio.metadata._intersection' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/metadata/_intersection.c -o build/temp.linux-x86_64-cpython-313/skbio/metadata/_intersection.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/metadata/_intersection.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/_intersection.cpython-313-x86_64-linux-gnu.so building 'skbio.alignment._ssw_wrapper' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -Iskbio/alignment -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/alignment/_ssw_wrapper.c -o build/temp.linux-x86_64-cpython-313/skbio/alignment/_ssw_wrapper.o In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from skbio/alignment/_ssw_wrapper.c:1273: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/alignment/_ssw_wrapper.o -L/usr/lib/x86_64-linux-gnu -lssw -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_ssw_wrapper.cpython-313-x86_64-linux-gnu.so building 'skbio.tree._c_nj' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/tree/_c_nj.c -o build/temp.linux-x86_64-cpython-313/skbio/tree/_c_nj.o -I. -fopenmp-simd -DSIMDE_ENABLE_OPENMP -fopenmp x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/tree/_c_nj.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_c_nj.cpython-313-x86_64-linux-gnu.so -fopenmp building 'skbio.tree._c_me' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/tree/_c_me.c -o build/temp.linux-x86_64-cpython-313/skbio/tree/_c_me.o -I. -fopenmp-simd -DSIMDE_ENABLE_OPENMP -fopenmp x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/tree/_c_me.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_c_me.cpython-313-x86_64-linux-gnu.so -fopenmp building 'skbio.diversity._phylogenetic' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/diversity/_phylogenetic.c -o build/temp.linux-x86_64-cpython-313/skbio/diversity/_phylogenetic.o In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from skbio/diversity/_phylogenetic.c:1249: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/diversity/_phylogenetic.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/_phylogenetic.cpython-313-x86_64-linux-gnu.so building 'skbio.stats.ordination._cutils' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/stats/ordination/_cutils.c -o build/temp.linux-x86_64-cpython-313/skbio/stats/ordination/_cutils.o -I. -fopenmp-simd -DSIMDE_ENABLE_OPENMP -fopenmp x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/stats/ordination/_cutils.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/_cutils.cpython-313-x86_64-linux-gnu.so -fopenmp building 'skbio.stats.distance._cutils' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 -fPIC -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c skbio/stats/distance/_cutils.c -o build/temp.linux-x86_64-cpython-313/skbio/stats/distance/_cutils.o -I. -fopenmp-simd -DSIMDE_ENABLE_OPENMP -fopenmp In file included from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from skbio/stats/distance/_cutils.c:1249: /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-skbio-0.6.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/python-skbio-0.6.3 build/temp.linux-x86_64-cpython-313/skbio/stats/distance/_cutils.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/_cutils.cpython-313-x86_64-linux-gnu.so -fopenmp running install_lib creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/.pytest_cache/README.md -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/_driver.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/_block.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/tests/test_block.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/tests/__pycache__/test_util.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/tests/__pycache__/test_block.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/tests/__pycache__/test_driver.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/tests/test_util.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/tests/test_driver.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/_phylogenetic.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/_unifrac.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/__pycache__/test_unifrac.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests/data creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/tests/test_unifrac.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/__pycache__/_unifrac.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/beta/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/_util.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/__pycache__/_util.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/__pycache__/_driver.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/__pycache__/_block.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/_lladser.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/_chao1.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/test_pd.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/test_ace.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/test_base.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/test_gini.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_pd.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_gini.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_ace.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_lladser.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_base.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/__pycache__/test_chao1.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/data creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/test_lladser.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/tests/test_chao1.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/_base.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/__pycache__/_ace.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/__pycache__/_pd.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/__pycache__/_chao1.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/__pycache__/_gini.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/__pycache__/_lladser.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/__pycache__/_base.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/_ace.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/_gini.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/diversity/alpha/_pd.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_grammared_sequence.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_nucleotide_mixin.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_alphabet.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_protein.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/test_grammared_sequence.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/test_protein.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/test_rna.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/test_substitution.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/test_sequence.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/test_distance.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/test_alphabet.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/test_genetic_code.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/__pycache__/test_alphabet.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/__pycache__/test_distance.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/__pycache__/test_dna.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/__pycache__/test_genetic_code.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/__pycache__/test_rna.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/__pycache__/test_grammared_sequence.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/__pycache__/test_substitution.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/__pycache__/test_sequence.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/__pycache__/test_protein.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/__pycache__/test_nucleotide_sequences.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/test_nucleotide_sequences.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/tests/test_dna.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_sequence.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_repr.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/__pycache__/_protein.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/__pycache__/_repr.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/__pycache__/_sequence.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/__pycache__/_rna.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/__pycache__/_dna.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/__pycache__/_nucleotide_mixin.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/__pycache__/_substitution.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/__pycache__/_genetic_code.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/__pycache__/_alphabet.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/__pycache__/distance.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/__pycache__/_grammared_sequence.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/distance.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_genetic_code.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_substitution.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_dna.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/sequence/_rna.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tests/test_base.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tests/__pycache__/test_base.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tests/__pycache__/test_workflow.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tests/test_workflow.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table/tests/test_base.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table/tests/__pycache__/test_base.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table/_base.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/table/__pycache__/_base.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/_base.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/registry.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/_warning.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/emptyfile.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/stockholm.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/binary_dm.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/blast7.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/clustal.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/embed.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/_blast.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_ordination.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_newick.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_sample_metadata.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_biom.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_genbank.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_base.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_clustal.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_fasta.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_emptyfile.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_blast7.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_stockholm.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_fastq.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_embl.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_lsmat.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_phylip.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_binary_dm.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_sequence_feature_vocabulary.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_fasta.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_sample_metadata.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_binary_dm.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_ordination.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_blast6.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_gff3.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_blast7.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_taxdump.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_stockholm.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_emptyfile.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_base.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_genbank.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_embed.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_fastq.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_biom.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_newick.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_lsmat.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_clustal.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_embl.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_sequence_feature_vocabulary.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_phylip.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/__pycache__/test_qseq.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace-split-id.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_malformed_gr_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error10 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_6_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_variable_length_ids -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error18 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_single_seq_long -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_trunc_at_plus.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/genbank_single_record_lower -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/tsv_8_fields -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_qual_vtab.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast7_custom_mixed_nans -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast7_custom_single_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_multi_seq_spaces -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_malformed_gf_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_invalid_header_too_long -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_missing_footer -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast6_custom_mixed_nans -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast7_default_single_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast6_default_multi_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/embl_w_beginning_whitespace -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast6_invalid_column_types -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/legacy9_and_blast7_default -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_missing_header -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_ws_lines_between_records -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_rna -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_invalid_blank_after_header -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qseq_invalid_filter -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_different_padding -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/tsv_10_fields -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast7_custom_multi_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/embed2.txt.npy -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error8 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error17 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/embl_constructed -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/sample-metadata-comments.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_nonstring_labels -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error9 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_diff_ids.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_max_width_1 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_invalid_seq_too_short -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_multiple_trees -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_max_width_5 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/empty -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast6_custom_multi_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_multiple_references -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/gff3_single_record -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_qual_unit_sep.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/embl_feature_level_record -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error4 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/embl_multi_records -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_multi_seq_sanger -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_duplicate_gr -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_qual_del.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_extensive -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/whitespace_only -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/genbank_single_record -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast7_invalid_differing_fields -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/embl_uniprot_record -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/embl_single_record_simple -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_missing_reference_items -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qseq_invalid_x -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_single_tree_with_id -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_blanks_end_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error14 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_multi_blank_between_records -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_invalid_legacy_format -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_tabular_msa_different_type -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/wrapping_original_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_invalid_header_too_short -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_metadata_only -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/prot.emb -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_2_seqs_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_all_data_types -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_invalid_blank_sequence -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_description_newline_replacement_none -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error13 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/sample-metadata-comments-comment-char-id.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/wrapping_as_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast7_invalid_too_many_columns -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_malformed_gc_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_mixed_qual_scores -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast7_invalid_gibberish -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error22 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_multi_seq_roundtrip -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_double_seq.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_trunc_at_qual.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast7_invalid_for_sniffer -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/gff3_dna -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_multi_seq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast7_invalid_no_data -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_qual_space.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_runon_references_mixed -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_malformed_data_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_multi_seq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_10_seqs -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/legacy9_mixed_nans -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast7_custom_minimal -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error1 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_description_newline_replacement_none -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qseq_invalid_lane -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_duplicate_gc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error15 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error23 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/sample-metadata-comments-mixed-case.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_invalid_data_type -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_tabular_msa_different_type -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error6 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_tabs.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_blank_lines -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_malformed_gs_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/wrapping_as_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast6_custom_single_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error12 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/pdb_hits.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_spaces.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error24 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast6_invalid_number_of_columns -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_blanks_end_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_max_width_1 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error2 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/sample-metadata-complete-types-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/longreads_original_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_multiple_msa -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_blank_lines -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_example2_scores -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_differing_gr_data_length -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_example3_scores -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_trunc_in_title.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qseq_invalid_y -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_missing_header -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_differing_seq_lengths -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_3_seqs_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_writer_sanger_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_qual_scores_float -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_3_seqs_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_two_of_each_metadata -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/legacy9_multi_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_single_seq_short -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast6_custom_minimal -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_invalid_zero_seqs -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qseq_invalid_tile -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/embl_feature_level_record_no_FT -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/tiny_embedding_file.npz -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_qual_escape.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/gff3_bad_missing_directive -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_double_qual.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_ws_lines_between_records -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_qual_null.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_dna_3_seqs -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_short_qual.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/embl_single_record -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_invalid_no_header -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_whitespace_only_lines -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast6_default_single_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_ws_lines_end_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/genbank_multi_records -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/embl_single_record_lower -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qseq_single_seq_sanger -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error11 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_blank_lines_between_records -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_two_chunks -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/taxdump_nodes.dmp -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_invalid_missing_header -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_single_reference -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_runon_references -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast6_invalid_type_in_column -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/longreads_as_illumina.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_qual_tab.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_qual_scores_string -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_max_width_5 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_trunc_at_seq.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/genbank_w_beginning_whitespace -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/embl_single_record_upper -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_invalid_missing_header -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_differing_gc_data_length -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/genbank_missing_locus_name -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_blank_sequence -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error16 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error19 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_blank_lines_between_records -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error21 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_invalid_seq_too_long -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_trunc_in_plus.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_single_tree_without_id -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/legacy9_single_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qseq_invalid_read -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/blast7_default_multi_line -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error3 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_single_seq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_no_data -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_3_seqs_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/gff3_bad_wrong_columns -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/longreads_as_sanger.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/taxdump_names.dmp -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_5_blanks_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_missing_rn_tag -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_minimal -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/sample-metadata-empty-rows.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_invalid_legacy_format -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error5 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error20 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_trunc_in_qual.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_extensive_mixed -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/prot_vec.emb -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_long_qual.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_trunc_in_seq.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/genbank_single_record_upper -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/gff3_multi_record -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/stockholm_data_only -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_single_seq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/embed1.txt.npy -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/ordination_error7 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/legacy9_invalid_differing_fields -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/error_no_qual.fastq -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/data/fastq_whitespace_only_lines -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_gff3.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_qseq.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_blast6.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_taxdump.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/tests/test_embed.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/embl.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/_base.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/phylip.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/taxdump.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/ordination.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/qseq.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/gff3.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/gff3.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/clustal.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/newick.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/_blast.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/embl.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/biom.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/phylip.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/sample_metadata.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/stockholm.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/qseq.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/embed.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/ordination.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/taxdump.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/fasta.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/binary_dm.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/genbank.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/blast6.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/emptyfile.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/lsmat.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/fastq.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/blast7.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/_sequence_feature_vocabulary.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/__pycache__/_base.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/sample_metadata.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/blast6.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/fastq.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/fasta.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/lsmat.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/_sequence_feature_vocabulary.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/newick.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/genbank.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/format/biom.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/__pycache__/test_util.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/__pycache__/test_iosources.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/__pycache__/test_registry.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data/example_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data/real_file_2 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data/example_file.bz2 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data/big5_file.bz2 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data/big5_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data/big5_file.gz -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data/example_file.gz -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/data/real_file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/test_util.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/test_iosources.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/tests/test_registry.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/__pycache__/registry.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/__pycache__/_warning.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/__pycache__/_iosources.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/__pycache__/_exception.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/__pycache__/_fileobject.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/_iosources.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/_exception.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/util.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/io/_fileobject.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/test.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/workflow.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/__pycache__/workflow.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/__pycache__/test.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/__pycache__/_base.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_testing.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_plotting.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_decorator.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_warning.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/test_warning.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/test_decorator.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/test_plotting.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/__pycache__/test_misc.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/__pycache__/test_plotting.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/__pycache__/test_testing.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/__pycache__/test_docstring.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/__pycache__/test_decorator.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/__pycache__/test_warning.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/test_testing.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/test_misc.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/tests/test_docstring.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/__pycache__/_plotting.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/__pycache__/_warning.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/__pycache__/_exception.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/__pycache__/_docstring.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/__pycache__/_decorator.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/__pycache__/_misc.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/__pycache__/_testing.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_exception.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_misc.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/util/_docstring.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/_subsample.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve/_hommola.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve/tests/test_hommola.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve/tests/__pycache__/test_hommola.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve/tests/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve/__pycache__/_hommola.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/evolve/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/_correspondence_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/_canonical_correspondence_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/test_correspondence_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/__pycache__/test_util.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/__pycache__/test_ordination_results.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/__pycache__/test_principal_coordinate_analysis.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/__pycache__/test_canonical_correspondence_analysis.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/__pycache__/test_correspondence_analysis.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/__pycache__/test_redundancy_analysis.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example3_X -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example2_X -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/PCoA_sample_data -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example3_Y -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example2_Y -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/L&L_CA_data -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/varespec.csv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/PCoA_skbio -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/varechem.csv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/test_util.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/test_ordination_results.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/tests/test_redundancy_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/_redundancy_analysis.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/_utils.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/_ordination_results.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/_cutils.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/__pycache__/_canonical_correspondence_analysis.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/__pycache__/_correspondence_analysis.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/__pycache__/_redundancy_analysis.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/__pycache__/_utils.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/__pycache__/_principal_coordinate_analysis.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/ordination/__pycache__/_ordination_results.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/test_power.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/test_subsample.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/test_gradient.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/__pycache__/test_misc.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/__pycache__/test_gradient.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/__pycache__/test_composition.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/__pycache__/test_power.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/__pycache__/test_subsample.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data/gr_wo_msg_raw -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data/vr_real_raw -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data/vr_raw -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data/cr_data_out -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data/gr_wo_msg_out -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data/cr_data_raw -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data/gr_w_msg_raw -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data/cr_no_data_out -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data/vr_real_out -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data/vr_out -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data/cr_no_data_raw -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/data/gr_w_msg_out -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/test_misc.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/tests/test_composition.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/power.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/_anosim.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/_mantel.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/test_mantel.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/test_permanova.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/test_anosim.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/test_base.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/__pycache__/test_anosim.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/__pycache__/test_mantel.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/__pycache__/test_permanova.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/__pycache__/test_base.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/__pycache__/test_permdisp.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/__pycache__/test_bioenv.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/frameSeries_dm.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/dm2.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/dm4.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/dm3.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/dm_reordered.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/exp_results.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/df.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/df_extra_column.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/frameSeries_grouping.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/dm.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/exp_results_single_column.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/test_bioenv.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/tests/test_permdisp.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/_bioenv.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/_base.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/_utils.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/_permdisp.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/_cutils.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/__pycache__/_bioenv.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/__pycache__/_permanova.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/__pycache__/_anosim.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/__pycache__/_mantel.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/__pycache__/_utils.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/__pycache__/_permdisp.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/__pycache__/_base.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/distance/_permanova.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/__pycache__/power.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/__pycache__/_subsample.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/__pycache__/composition.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/__pycache__/gradient.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/__pycache__/_misc.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/gradient.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/_misc.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/stats/composition.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_tabular_msa.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_path.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests/test_ssw.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests/test_path.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests/test_tabular_msa.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests/__pycache__/test_pairwise.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests/__pycache__/test_tabular_msa.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests/__pycache__/test_ssw.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests/__pycache__/test_path.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/tests/test_pairwise.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_indexing.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/_lib copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_lib/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/_lib creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/_lib/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_lib/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/_lib/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_repr.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/__pycache__/_repr.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/__pycache__/_pairwise.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/__pycache__/_tabular_msa.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/__pycache__/_path.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/__pycache__/_indexing.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_pairwise.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/alignment/_ssw_wrapper.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/_protein.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/tests/test_protein.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/tests/__pycache__/test_embedding.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/tests/__pycache__/test_protein.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/tests/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/tests/data/embed1.txt.npy -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/tests/data copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/tests/test_embedding.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/__pycache__/_protein.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/__pycache__/_embedding.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/embedding/_embedding.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/_mixin.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/_intersection.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/_testing.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/_metadata.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/missing.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/test_intersection.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/test_interval.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/test_enan.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/test_io.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/test_metadata_column.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/__pycache__/test_metadata_column.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/__pycache__/test_mixin.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/__pycache__/test_missing.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/__pycache__/test_intersection.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/__pycache__/test_interval.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/__pycache__/test_enan.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/__pycache__/test_metadata.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/__pycache__/test_io.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/__pycache__ creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/header-only.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/duplicate-ids-with-whitespace.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/column-name-conflicts-with-id-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/invalid-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/empty-id.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/whitespace-only-column-name.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/unrecognized-column-type.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/id-conflicts-with-id-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/non-utf-8.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/types-directive-non-numeric.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/qiime1-empty.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/header-only-with-comments-and-empty-rows.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/duplicate-column-names-with-whitespace.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/whitespace-only-id.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/duplicate-ids.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/duplicate-directives.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/unrecognized-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/directive-before-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/directive-longer-than-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/data-longer-than-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/empty-column-name.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/simple-utf-16le.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/empty-file -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/comments-and-empty-rows-only.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/simple-utf-16be.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/duplicate-column-names.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/directive-after-directives-section.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/invalid/missing-unknown-scheme.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/invalid creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/qiita-preparation-information.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/empty-rows.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/single-id.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/numeric-column.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/unix-line-endings.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/missing-data.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/minimal.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/simple.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/override-insdc.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/BOM-simple.txt -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/windows-line-endings.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/empty-types-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/single-column.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/complete-types-directive_w_sk.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/no-newline-at-eof.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/simple.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/all-cells-padded.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/no-id-or-column-name-type-cast.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/biom-observation-metadata.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/leading-trailing-whitespace.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/mac-line-endings.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/comments.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/qiita-sample-information.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/trailing-columns.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/partial-types-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/jagged-trailing-columns.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/jagged.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/column-order.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/missing-insdc.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/complete-types-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/simple-with-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/recommended-ids.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/case-insensitive-types-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/no-columns.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/non-standard-characters.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/qiime1.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/missing-insdc-no-directive.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/data/valid/rows-shorter-than-header.tsv -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/data/valid copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/test_missing.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/test_metadata.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/tests/test_mixin.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/_enan.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/io.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/base.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/_repr.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/__pycache__/_repr.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/__pycache__/_mixin.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/__pycache__/io.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/__pycache__/_enan.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/__pycache__/_metadata.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/__pycache__/base.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/__pycache__/_interval.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/__pycache__/_testing.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/__pycache__/missing.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/metadata/_interval.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_tree.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/__init__.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/test_compare.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/test_me.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/test_nj.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/__pycache__/test_upgma.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/__pycache__/test_me.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/__pycache__/test_tree.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/__pycache__/test_compare.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/__pycache__/test_majority_rule.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/__pycache__/test_nj.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/test_majority_rule.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/test_tree.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/tests/test_upgma.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_nj.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_upgma.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_utils.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree creating /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/__pycache__/_compare.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/__pycache__/_majority_rule.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/__pycache__/_tree.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/__pycache__/_exception.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/__pycache__/_upgma.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/__pycache__/_utils.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/__pycache__/_nj.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/__pycache__/_me.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/__pycache__ copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_c_me.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_c_nj.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_exception.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_me.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_majority_rule.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree copying /build/reproducible-path/python-skbio-0.6.3/.pybuild/cpython3_3.13_skbio/build/skbio/tree/_compare.py -> /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/_driver.py to _driver.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/_block.py to _block.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests/test_block.py to test_block.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests/test_util.py to test_util.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/tests/test_driver.py to test_driver.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/_unifrac.py to _unifrac.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/beta/tests/test_unifrac.py to test_unifrac.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/_util.py to _util.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/_lladser.py to _lladser.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/_chao1.py to _chao1.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/test_pd.py to test_pd.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/test_ace.py to test_ace.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/test_base.py to test_base.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/test_gini.py to test_gini.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/test_lladser.py to test_lladser.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/tests/test_chao1.py to test_chao1.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/_base.py to _base.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/_ace.py to _ace.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/_gini.py to _gini.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/diversity/alpha/_pd.py to _pd.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/_grammared_sequence.py to _grammared_sequence.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/_nucleotide_mixin.py to _nucleotide_mixin.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/_alphabet.py to _alphabet.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/_protein.py to _protein.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/test_grammared_sequence.py to test_grammared_sequence.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/test_protein.py to test_protein.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/test_rna.py to test_rna.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/test_substitution.py to test_substitution.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/test_sequence.py to test_sequence.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/test_distance.py to test_distance.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/test_alphabet.py to test_alphabet.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/test_genetic_code.py to test_genetic_code.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/test_nucleotide_sequences.py to test_nucleotide_sequences.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/tests/test_dna.py to test_dna.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/_sequence.py to _sequence.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/_repr.py to _repr.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/distance.py to distance.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/_genetic_code.py to _genetic_code.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/_substitution.py to _substitution.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/_dna.py to _dna.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/sequence/_rna.py to _rna.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tests/test_base.py to test_base.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tests/test_workflow.py to test_workflow.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table/tests/test_base.py to test_base.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/table/_base.py to _base.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/_base.py to _base.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/registry.py to registry.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/_warning.py to _warning.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/emptyfile.py to emptyfile.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/stockholm.py to stockholm.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/binary_dm.py to binary_dm.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/blast7.py to blast7.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/clustal.py to clustal.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/embed.py to embed.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/_blast.py to _blast.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_ordination.py to test_ordination.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_newick.py to test_newick.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_sample_metadata.py to test_sample_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_biom.py to test_biom.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_genbank.py to test_genbank.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_base.py to test_base.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_clustal.py to test_clustal.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_fasta.py to test_fasta.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_emptyfile.py to test_emptyfile.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_blast7.py to test_blast7.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_stockholm.py to test_stockholm.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_fastq.py to test_fastq.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_embl.py to test_embl.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_lsmat.py to test_lsmat.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_phylip.py to test_phylip.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_binary_dm.py to test_binary_dm.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_sequence_feature_vocabulary.py to test_sequence_feature_vocabulary.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_gff3.py to test_gff3.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_qseq.py to test_qseq.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_blast6.py to test_blast6.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_taxdump.py to test_taxdump.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/tests/test_embed.py to test_embed.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/embl.py to embl.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/_base.py to _base.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/phylip.py to phylip.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/taxdump.py to taxdump.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/ordination.py to ordination.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/qseq.py to qseq.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/gff3.py to gff3.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/sample_metadata.py to sample_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/blast6.py to blast6.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/fastq.py to fastq.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/fasta.py to fasta.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/lsmat.py to lsmat.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/_sequence_feature_vocabulary.py to _sequence_feature_vocabulary.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/newick.py to newick.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/genbank.py to genbank.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/format/biom.py to biom.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/test_util.py to test_util.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/test_iosources.py to test_iosources.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/tests/test_registry.py to test_registry.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/_iosources.py to _iosources.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/_exception.py to _exception.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/util.py to util.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/io/_fileobject.py to _fileobject.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/test.py to test.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/workflow.py to workflow.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/_testing.py to _testing.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/_plotting.py to _plotting.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/_decorator.py to _decorator.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/_warning.py to _warning.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/test_warning.py to test_warning.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/test_decorator.py to test_decorator.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/test_plotting.py to test_plotting.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/test_testing.py to test_testing.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/test_misc.py to test_misc.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/tests/test_docstring.py to test_docstring.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/_exception.py to _exception.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/_misc.py to _misc.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/util/_docstring.py to _docstring.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/_subsample.py to _subsample.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve/_hommola.py to _hommola.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/evolve/tests/test_hommola.py to test_hommola.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/_correspondence_analysis.py to _correspondence_analysis.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py to _principal_coordinate_analysis.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/_canonical_correspondence_analysis.py to _canonical_correspondence_analysis.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/test_principal_coordinate_analysis.py to test_principal_coordinate_analysis.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/test_correspondence_analysis.py to test_correspondence_analysis.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/test_util.py to test_util.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py to test_canonical_correspondence_analysis.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/test_ordination_results.py to test_ordination_results.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/tests/test_redundancy_analysis.py to test_redundancy_analysis.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/_redundancy_analysis.py to _redundancy_analysis.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/_utils.py to _utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/ordination/_ordination_results.py to _ordination_results.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/test_power.py to test_power.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/test_subsample.py to test_subsample.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/test_gradient.py to test_gradient.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/test_misc.py to test_misc.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/tests/test_composition.py to test_composition.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/power.py to power.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/_anosim.py to _anosim.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/_mantel.py to _mantel.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/test_mantel.py to test_mantel.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/test_permanova.py to test_permanova.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/test_anosim.py to test_anosim.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/test_base.py to test_base.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/test_bioenv.py to test_bioenv.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/tests/test_permdisp.py to test_permdisp.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/_bioenv.py to _bioenv.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/_base.py to _base.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/_utils.py to _utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/_permdisp.py to _permdisp.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/distance/_permanova.py to _permanova.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/gradient.py to gradient.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/_misc.py to _misc.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/stats/composition.py to composition.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/_tabular_msa.py to _tabular_msa.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/_path.py to _path.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests/test_ssw.py to test_ssw.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests/test_path.py to test_path.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests/test_tabular_msa.py to test_tabular_msa.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/tests/test_pairwise.py to test_pairwise.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/_indexing.py to _indexing.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/_lib/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/_repr.py to _repr.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/alignment/_pairwise.py to _pairwise.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/_protein.py to _protein.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/tests/test_protein.py to test_protein.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/tests/test_embedding.py to test_embedding.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/embedding/_embedding.py to _embedding.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/_mixin.py to _mixin.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/_testing.py to _testing.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/_metadata.py to _metadata.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/missing.py to missing.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/test_intersection.py to test_intersection.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/test_interval.py to test_interval.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/test_enan.py to test_enan.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/test_io.py to test_io.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/test_metadata_column.py to test_metadata_column.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/test_missing.py to test_missing.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/test_metadata.py to test_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/tests/test_mixin.py to test_mixin.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/_enan.py to _enan.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/io.py to io.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/base.py to base.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/_repr.py to _repr.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/metadata/_interval.py to _interval.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/_tree.py to _tree.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/test_compare.py to test_compare.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/test_me.py to test_me.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/test_nj.py to test_nj.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/test_majority_rule.py to test_majority_rule.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/test_tree.py to test_tree.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/tests/test_upgma.py to test_upgma.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/_nj.py to _nj.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/_upgma.py to _upgma.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/_utils.py to _utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/_exception.py to _exception.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/_me.py to _me.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/_majority_rule.py to _majority_rule.cpython-313.pyc byte-compiling /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/skbio/tree/_compare.py to _compare.cpython-313.pyc running install_egg_info running egg_info creating scikit_bio.egg-info writing scikit_bio.egg-info/PKG-INFO writing dependency_links to scikit_bio.egg-info/dependency_links.txt writing requirements to scikit_bio.egg-info/requires.txt writing top-level names to scikit_bio.egg-info/top_level.txt writing manifest file 'scikit_bio.egg-info/SOURCES.txt' dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'scikit_bio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'simde-sse2.h' no previously-included directories found matching 'web/_build' warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution warning: no previously-included files matching '.coverage' found anywhere in distribution adding license file 'LICENSE.txt' writing manifest file 'scikit_bio.egg-info/SOURCES.txt' Copying scikit_bio.egg-info to /build/reproducible-path/python-skbio-0.6.3/debian/python3-skbio/usr/lib/python3.13/dist-packages/scikit_bio-0.6.3.egg-info Skipping SOURCES.txt running install_scripts dh_install -O--buildsystem=pybuild debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-skbio-0.6.3' dh_numpy3 Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. make[1]: Leaving directory '/build/reproducible-path/python-skbio-0.6.3' dh_installdocs -O--buildsystem=pybuild debian/rules override_dh_sphinxdoc make[1]: Entering directory '/build/reproducible-path/python-skbio-0.6.3' dh_link --package=python-skbio-doc \ /usr/share/javascript/mathjax/MathJax.js \ /usr/share/doc/python-skbio-doc/html/_static/MathJax.js dh_sphinxdoc --package=python-skbio-doc dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-skbio-doc/usr/share/doc/python-skbio-doc/html/_static/copybutton.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-skbio-doc/usr/share/doc/python-skbio-doc/html/_static/MathJax.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-skbio-doc/usr/share/doc/python-skbio-doc/html/_static/scripts/fontawesome.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-skbio-doc/usr/share/doc/python-skbio-doc/html/_static/clipboard.min.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-skbio-doc/usr/share/doc/python-skbio-doc/html/_static/copybutton_funcs.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-skbio-doc/usr/share/doc/python-skbio-doc/html/_static/design-tabs.js make[1]: Leaving directory '/build/reproducible-path/python-skbio-0.6.3' dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-skbio-doc' in '../python-skbio-doc_0.6.3-1_all.deb'. dpkg-deb: building package 'python3-skbio' in '../python3-skbio_0.6.3-1_amd64.deb'. dpkg-deb: building package 'python3-skbio-dbgsym' in '../python3-skbio-dbgsym_0.6.3-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../python-skbio_0.6.3-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-skbio_0.6.3-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2107516 and its subdirectories I: Current time: Sun Sep 7 05:17:44 -12 2025 I: pbuilder-time-stamp: 1757265464 Sun Sep 7 17:17:45 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sun Sep 7 17:17:45 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sun Sep 7 17:34:22 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sun Sep 7 17:34:22 UTC 2025 I: python-skbio_0.6.3-1_amd64.changes: Format: 1.8 Date: Tue, 02 Sep 2025 19:41:32 +0200 Source: python-skbio Binary: python-skbio-doc python3-skbio python3-skbio-dbgsym Architecture: all amd64 Version: 0.6.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: python-skbio-doc - Data structures, algorithms, educational resources for bioinforma python3-skbio - Python3 data structures, algorithms, educational resources for bi Changes: python-skbio (0.6.3-1) unstable; urgency=medium . * Team upload. * New upstream release. * Standards-Version: 4.7.2 (routine-update) * d/control: reformat, remove unneeded versioned dependency information for scipy. * Refreshed patches, added additional -doc dependencies. Removed two patches applied upstream. * Add missing build dependency on python3-numpy-dev for command dh_numpy3. * Reformatted upstream metadata fields. * d/rules: set MPLCONFIGDIR while building the docs * d/control: additional docs dependency: python3-sphinx-sitemap * d/rules: use the skbio.test wrapper for pytest. * Fixed some lintian overrides syntax * Added patch to disable use of Google analytics for the docs. * d/patches/no_privacy_breach_logo.patch: fix metadata Checksums-Sha1: cb5a95a7b9a445ab2bb7ca210c66323a77900958 2216764 python-skbio-doc_0.6.3-1_all.deb 1b51fb8d567ee914dbdbeb6d63a67d302668c8ed 12930 python-skbio_0.6.3-1_amd64.buildinfo 5f0cabaa28ca39e5d189ca35cb47774771cbfd38 2600704 python3-skbio-dbgsym_0.6.3-1_amd64.deb f41b8c4e4b43c74fc266d851ac4713aecd34c20b 3772296 python3-skbio_0.6.3-1_amd64.deb Checksums-Sha256: f1328a199eda43c10e7d3bdc9c35b64f27729ac1aaf9efd1bf7ea6a7f2a332de 2216764 python-skbio-doc_0.6.3-1_all.deb d167290c9cd8687e153daedaa759594f8fdd4529034fb80f82fd9c5f5196917d 12930 python-skbio_0.6.3-1_amd64.buildinfo a49765532640db83366f077f22aaa5108fdbeab8f1534bead98f6c87dd9f5e8b 2600704 python3-skbio-dbgsym_0.6.3-1_amd64.deb 31891322dd9d9401071b0dd526c19f6629608f5b51c6ab13f6fcb49af87e20dd 3772296 python3-skbio_0.6.3-1_amd64.deb Files: 7a3ac020704685d0c31a33d1e86ce273 2216764 doc optional python-skbio-doc_0.6.3-1_all.deb d45f1f71adb1b561552d0b63c5ec55f8 12930 python optional python-skbio_0.6.3-1_amd64.buildinfo 695f9617a12fe3c643f6a81e31790990 2600704 debug optional python3-skbio-dbgsym_0.6.3-1_amd64.deb b20e0dc7be1191f70512d6552e3fc5bd 3772296 python optional python3-skbio_0.6.3-1_amd64.deb Sun Sep 7 17:34:23 UTC 2025 I: diffoscope 305 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_31-56712.service; invocation ID: a2375dd7b1d541369bc4c31835e99ca6 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.sgsShbG2/python-skbio_0.6.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.sgsShbG2/python-skbio_0.6.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.sgsShbG2/python-skbio_0.6.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.sgsShbG2/b1/python-skbio_0.6.3-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.sgsShbG2/b2/python-skbio_0.6.3-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.022s) 0.022s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 267ms CPU time consumed: 198ms Memory peak: 19.2M (swap: 0B) Sun Sep 7 17:38:17 UTC 2025 I: diffoscope 305 found no differences in the changes files, and a .buildinfo file also exists. Sun Sep 7 17:38:17 UTC 2025 I: python-skbio from forky built successfully and reproducibly on amd64. Sun Sep 7 17:38:18 UTC 2025 I: Removing signed python-skbio_0.6.3-1_amd64.buildinfo.asc files: removed './b1/python-skbio_0.6.3-1_amd64.buildinfo.asc' removed './b2/python-skbio_0.6.3-1_amd64.buildinfo.asc'