Tue Oct 21 22:57:12 UTC 2025 I: starting to build raster3d/forky/amd64 on jenkins on '2025-10-21 22:56' Tue Oct 21 22:57:12 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/86886/console.log Tue Oct 21 22:57:12 UTC 2025 I: Downloading source for forky/raster3d=3.0-8-1 --2025-10-21 22:57:12-- http://deb.debian.org/debian/pool/main/r/raster3d/raster3d_3.0-8-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2219 (2.2K) [text/prs.lines.tag] Saving to: ‘raster3d_3.0-8-1.dsc’ 0K .. 100% 277M=0s 2025-10-21 22:57:12 (277 MB/s) - ‘raster3d_3.0-8-1.dsc’ saved [2219/2219] Tue Oct 21 22:57:12 UTC 2025 I: raster3d_3.0-8-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: raster3d Binary: raster3d, raster3d-doc Architecture: any all Version: 3.0-8-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://www.bmsc.washington.edu/raster3d/raster3d.html Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/raster3d Vcs-Git: https://salsa.debian.org/med-team/raster3d.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), gfortran, libgd-dev, libjpeg-dev, libpng-dev, libtiff-dev Package-List: raster3d deb science optional arch=any raster3d-doc deb doc optional arch=all Checksums-Sha1: 08c1eb80780b58fa27c4f2e8e8b21329026d57b3 1724116 raster3d_3.0-8.orig.tar.gz 09f8566e0fa7d0a6a789cb6950e884b0defc737c 14100 raster3d_3.0-8-1.debian.tar.xz Checksums-Sha256: cc2c8b2c0a7df61c5810c9e803e1d04433ad525329239679cab73e63e762cbe2 1724116 raster3d_3.0-8.orig.tar.gz 41ae29105544814ab6d44b8f41ce00a6969563f80b789504eba6d0d214391698 14100 raster3d_3.0-8-1.debian.tar.xz Files: d2e62084b90cc51aa6adc788fe5a2c99 1724116 raster3d_3.0-8.orig.tar.gz cd92c96910da4ce5c8f1639873c90170 14100 raster3d_3.0-8-1.debian.tar.xz Dgit: bc952743467f6ef7bf8d2b62bcfdf16f3983ca82 debian archive/debian/3.0-8-1 https://git.dgit.debian.org/raster3d -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmjUQEMUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdo9FhAAwhSTjcvJVqdG6oN13bv34MkvG256 EUWxXsQvgqS0FwAMgfHM12Qwha2WbPfv2BhS5QkAItvRE1rgO50+UJXcdt0PnQ9F JBzA6n3wCsNX2Cb4MhFy0fTxXUUUfTN/OFXAGxh81ZBYdINDPPoU+dfyvr8q6WgR lS35tyw7WxBsPViDd7QPkyNp2RtMv1b4yaQw4JBIBOxdLmNEMsdraww83xh4BOxf bFjqhnz+rhbUZCN0NAt9p54G4yYm+xM52vksRASXsDBM/+p6XDaR2xlPRIrY1FOk jVzHtEgaSJs1hv4TDwsDo8wELrve3fz/72e2zRwiNRzzmMf1TiTLTFYmnRLpPLbA rQO0aCB43pVmqPvwxJQplKNmj6Bo30x1XgVaW6SU6zYafOyaT/n9Lw/+C3Qpoue6 +ZZStaOzvdhZVGC7VvAcWbRdzXVLeOf2E8pwY7BkI65JUiTbowa6oF+xJu5apKVk oD8EamW66bqwU0suKmEzBsXAD8rHqKboy/WkTNSZgcNrTaeBadSFRfbnZOGjbI0i Zaox3lVyxIC6cNX/QTwr8o+TDp/IIl3asU3+gJsbnfo8IGgCt/DHTigNkHcBHY73 kBzCUQc08cl4ZGyuUpUOSzI1BM6l1Sf55WeF2uEuZRgH9MzgB6zwNBWUQgypQT2J p6mA4OOKtD7qhtQ= =l8q1 -----END PGP SIGNATURE----- Tue Oct 21 22:57:12 UTC 2025 I: Checking whether the package is not for us Tue Oct 21 22:57:12 UTC 2025 I: Starting 1st build on remote node infom01-amd64.debian.net. Tue Oct 21 22:57:12 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Tue Oct 21 22:59:29 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 21 10:57:13 -12 2025 I: pbuilder-time-stamp: 1761087433 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [raster3d_3.0-8-1.dsc] I: copying [./raster3d_3.0-8.orig.tar.gz] I: copying [./raster3d_3.0-8-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./raster3d_3.0-8-1.dsc: no acceptable signature found dpkg-source: info: extracting raster3d in raster3d-3.0-8 dpkg-source: info: unpacking raster3d_3.0-8.orig.tar.gz dpkg-source: info: unpacking raster3d_3.0-8-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying BUGS.diff dpkg-source: info: applying example1.script.diff dpkg-source: info: applying example2.script.diff dpkg-source: info: applying example2.sgi.diff dpkg-source: info: applying example3.script.diff dpkg-source: info: applying example4.script.diff dpkg-source: info: applying example5.script.diff dpkg-source: info: applying example6.script.diff dpkg-source: info: applying example7.script.diff dpkg-source: info: applying example8.script.diff dpkg-source: info: applying example9.script.diff dpkg-source: info: applying Makefile.diff dpkg-source: info: applying Makefile.template.diff dpkg-source: info: applying msms_example.script.diff dpkg-source: info: applying r3d_objects.man.diff dpkg-source: info: applying raster3d.man.diff dpkg-source: info: applying render.man.diff dpkg-source: info: applying rods.man.diff dpkg-source: info: applying prevent_Makefile.incl_removal.patch dpkg-source: info: applying sequence_normal3d_qinp.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2192672/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='a4c7dce14a484ad59a516cb3a87dacc7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2192672' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.umflYmK8/pbuilderrc_IOZZ --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.umflYmK8/b1 --logfile b1/build.log raster3d_3.0-8-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.48+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2192672/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), gfortran, libgd-dev, libjpeg-dev, libpng-dev, libtiff-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19898 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on libgd-dev; however: Package libgd-dev is not installed. pbuilder-satisfydepends-dummy depends on libjpeg-dev; however: Package libjpeg-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on libtiff-dev; however: Package libtiff-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaom-dev{a} libaom3{a} libarchive-zip-perl{a} libavif-dev{a} libavif16{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libdav1d-dev{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig-dev{a} libfontconfig1{a} libfreetype-dev{a} libfreetype6{a} libgav1-1{a} libgd-dev{a} libgd3{a} libgfortran-15-dev{a} libgfortran5{a} libheif-dev{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libimagequant-dev{a} libimagequant0{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblerc-dev{a} liblerc4{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} librav1e-dev{a} librav1e0.8{a} libsharpyuv-dev{a} libsharpyuv0{a} libsvtav1enc-dev{a} libsvtav1enc2{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtool{a} libuchardet0{a} libunistring5{a} libvpx-dev{a} libvpx11{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxml2-16{a} libxpm-dev{a} libxpm4{a} libyuv-dev{a} libyuv0{a} libzstd-dev{a} m4{a} man-db{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} uuid-dev{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl libarchive-cpio-perl libheif-plugin-aomenc libheif-plugin-x265 libltdl-dev libmail-sendmail-perl libpng-tools lynx wget 0 packages upgraded, 114 newly installed, 0 to remove and 0 not upgraded. Need to get 128 MB of archives. After unpacking 491 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-1 [95.2 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 23 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libgfortran-15-dev amd64 15.2.0-4 [886 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-4 [78.8 MB] Get: 37 http://deb.debian.org/debian forky/main amd64 gfortran-15 amd64 15.2.0-4 [17.9 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4 [1276 B] Get: 39 http://deb.debian.org/debian forky/main amd64 gfortran amd64 4:15.2.0-4 [1436 B] Get: 40 http://deb.debian.org/debian forky/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libaom3 amd64 3.13.1-1 [1905 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libaom-dev amd64 3.13.1-1 [2161 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libdav1d-dev amd64 1.5.1-1 [26.6 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 librav1e0.8 amd64 0.8.1-5 [976 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 librav1e-dev amd64 0.8.1-5 [14.3 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libsvtav1enc-dev amd64 2.3.0+dfsg-1 [33.0 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libyuv0 amd64 0.0.1919.20250919-1 [175 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libyuv-dev amd64 0.0.1919.20250919-1 [230 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libavif16 amd64 1.3.0-1+b1 [137 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libavif-dev amd64 1.3.0-1+b1 [60.2 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libde265-0 amd64 1.0.16-1 [189 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libexpat1-dev amd64 2.7.3-1 [165 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libpng-dev amd64 1.6.50-1 [366 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libfreetype-dev amd64 2.13.3+dfsg-1 [622 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 uuid-dev amd64 2.41.2-1 [49.3 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libfontconfig-dev amd64 2.15.0-2.4 [426 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libheif-plugin-dav1d amd64 1.20.2-2+b1 [19.1 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libheif-plugin-libde265 amd64 1.20.2-2+b1 [17.7 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libheif1 amd64 1.20.2-2+b1 [601 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libgd3 amd64 2.3.3-13 [126 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 libsharpyuv-dev amd64 1.5.0-0.1 [120 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libheif-dev amd64 1.20.2-2+b1 [58.9 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libimagequant-dev amd64 4.4.0-3 [8270 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libjbig-dev amd64 2.1-6.1+b2 [31.4 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-2 [349 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [375 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 libwebpdecoder3 amd64 1.5.0-0.1 [208 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libwebp-dev amd64 1.5.0-0.1 [450 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libtiffxx6 amd64 4.7.1-1 [174 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 liblerc-dev amd64 4.0.0+ds-5 [183 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libtiff-dev amd64 4.7.1-1 [504 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libvpx11 amd64 1.15.2-2 [1111 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libvpx-dev amd64 1.15.2-2 [1274 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 xtrans-dev all 1.6.0-1 [93.5 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 libxpm-dev amd64 1:3.5.17-1+b3 [130 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libgd-dev amd64 2.3.3-13 [262 kB] Fetched 128 MB in 2s (57.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19898 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. 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Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/raster3d-3.0-8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../raster3d_3.0-8-1_source.changes dpkg-buildpackage: info: source package raster3d dpkg-buildpackage: info: source version 3.0-8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j12 distclean make[1]: Entering directory '/build/reproducible-path/raster3d-3.0-8' rm -f *.o avs2ps balls rastep render ribbon rings3d rods normal3d core *~ rm -f render_small render_small.f parse_small.f qinp_small.f parameters_small.incl rm -f lists.mod make -C examples clean make[2]: Entering directory '/build/reproducible-path/raster3d-3.0-8/examples' rm -f example1.png example2.png example3.png example4.png example5.png example6_draft.png example6_aa.png example6.png example6_alpha.png example7.png example8.png example9.png example1_diff.png example2_diff.png example3_diff.png example4_diff.png example5_diff.png example6_draft_diff.png example6_aa_diff.png example6_diff.png example6_alpha_diff.png example7_diff.png example8_diff.png example9_diff.png rm -f example2.r3d example8.r3d example9[abcdef].png example9_labels.png rm -rf reference make[2]: Leaving directory '/build/reproducible-path/raster3d-3.0-8/examples' if [ -e aix-patch ] ; then rm -f aix-patch; fi exit 0 make[1]: Leaving directory '/build/reproducible-path/raster3d-3.0-8' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/raster3d-3.0-8' /usr/bin/make linux make[2]: Entering directory '/build/reproducible-path/raster3d-3.0-8' make[2]: Leaving directory '/build/reproducible-path/raster3d-3.0-8' make[1]: Leaving directory '/build/reproducible-path/raster3d-3.0-8' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/raster3d-3.0-8' dh_auto_install -- prefix=/build/reproducible-path/raster3d-3.0-8/debian/tmp make -j12 install DESTDIR=/build/reproducible-path/raster3d-3.0-8/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" prefix=/build/reproducible-path/raster3d-3.0-8/debian/tmp make[2]: Entering directory '/build/reproducible-path/raster3d-3.0-8' gcc -g -O2 -Wall -Dgfortran -I/usr/include -I/usr/local/include -DGUNZIP -DTIFF_SUPPORT -DTIFF_INVERT -DGD_SUPPORT -DLINUX -DNETWORKBYTEORDER -Wl,-z,relro -Wl,-z,now -o avs2ps avs2ps.c -lm gfortran -std=legacy -g -w -O2 -Wno-tabs -ffixed-line-length-132 -Wl,-z,relro -Wl,-z,now -o balls balls.f Making Raster3D 3.0-8 for linux gfortran -std=legacy -g -w -O2 -Wno-tabs -ffixed-line-length-132 -c -o quadric.o quadric.f gfortran -std=legacy -g -w -O2 -Wno-tabs -ffixed-line-length-132 -c -o suv.o suv.f gfortran -std=legacy -g -w -O2 -Wno-tabs -ffixed-line-length-132 -c -o render.o render.f gcc -g -O2 -Wall -Dgfortran -I/usr/include -I/usr/local/include -DGUNZIP -DTIFF_SUPPORT -DTIFF_INVERT -DGD_SUPPORT -DLINUX -DNETWORKBYTEORDER -c local.c gfortran -std=legacy -g -w -O2 -Wno-tabs -ffixed-line-length-132 -c -o parse.o parse.f gfortran -std=legacy -g -w -O2 -Wno-tabs -ffixed-line-length-132 -c -o r3dtogd.o r3dtogd.f gcc -g -O2 -Wall -Dgfortran -DGUNZIP -DLINUX -DNETWORKBYTEORDER -c ungz.c gfortran -std=legacy -g -w -O2 -Wno-tabs -ffixed-line-length-132 -c -o normal3d.o normal3d.f gfortran -std=legacy -g -w -O2 -Wno-tabs -ffixed-line-length-132 -Wl,-z,relro -Wl,-z,now \ ribbon.f ribbon1.f modsubs.f -o ribbon gfortran -std=legacy -g -w -O2 -Wno-tabs -ffixed-line-length-132 -Wl,-z,relro -Wl,-z,now rings3d.f -o rings3d local.c: In function 'local_': local.c:153:5: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 153 | strncpy( &program_name[9], VERSION, strlen(VERSION)+1 ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ local.c:153:41: note: length computed here 153 | strncpy( &program_name[9], VERSION, strlen(VERSION)+1 ); | ^~~~~~~~~~~~~~~ gfortran -std=legacy -g -w -O2 -Wno-tabs -ffixed-line-length-132 -Wl,-z,relro -Wl,-z,now rods.f -o rods gfortran -std=legacy -g -w -O2 -Wno-tabs -ffixed-line-length-132 \ rastep.f quadric.o suv.o -Wl,-z,relro -Wl,-z,now \ -o rastep gfortran -std=legacy -g -O0 -Wall -Wno-tabs -c -o qinp.o qinp.f gfortran -std=legacy -g -w -O2 -Wno-tabs -ffixed-line-length-132 \ normal3d.o quadric.o ungz.o qinp.o -Wl,-z,relro -Wl,-z,now \ -o normal3d /usr/bin/ld: ungz.o: in function `ungz_': /build/reproducible-path/raster3d-3.0-8/ungz.c:19:(.text+0x1d): warning: the use of `tempnam' is dangerous, better use `mkstemp' gfortran -std=legacy -g -w -O2 -Wno-tabs -ffixed-line-length-132 \ render.o local.o quadric.o parse.o r3dtogd.o ungz.o \ qinp.o \ -L/usr/lib -lm -ltiff -lgd -Wl,-z,relro -Wl,-z,now \ -o render /usr/bin/ld: ungz.o: in function `ungz_': /build/reproducible-path/raster3d-3.0-8/ungz.c:19:(.text+0x1d): warning: the use of `tempnam' is dangerous, better use `mkstemp' if [ ! -e /build/reproducible-path/raster3d-3.0-8/debian/tmp ] ; then mkdir -p /build/reproducible-path/raster3d-3.0-8/debian/tmp ; fi if [ ! -e /build/reproducible-path/raster3d-3.0-8/debian/tmp/bin ] ; then mkdir -p /build/reproducible-path/raster3d-3.0-8/debian/tmp/bin ; fi chmod 755 avs2ps balls rastep render ribbon rings3d rods normal3d; for i in normal3d render; do cp $i /build/reproducible-path/raster3d-3.0-8/debian/tmp/bin/$i.real; done cp avs2ps balls label3d rastep ribbon rings3d rods stereo3d /build/reproducible-path/raster3d-3.0-8/debian/tmp/bin chmod 755 stereo3d worms; cp stereo3d worms /build/reproducible-path/raster3d-3.0-8/debian/tmp/bin if [ ! -e /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/raster3d/materials ] ; then mkdir -p /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/raster3d/materials ; fi cp materials/* /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/raster3d/materials if [ ! -e /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/man/man1 ] ; then mkdir -p /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/man/man1 ; fi for i in doc/*.l; do j=`basename $i .l`; cp $i /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/man/man1/${j}.1; done if [ ! -e /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/raster3d/html ] ; then mkdir -p /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/raster3d/html ; fi cp html/* /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/raster3d/html if [ ! -e /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/raster3d/examples ] ; then mkdir -p /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/raster3d/examples ; fi if [ ! -e /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/raster3d/examples/msms ] ; then mkdir -p /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/raster3d/examples/msms ; fi cp -R examples/* /build/reproducible-path/raster3d-3.0-8/debian/tmp/share/raster3d/examples ******************************************** * The examples subdirectory contains input * * scripts to verify your installation and * * to serve as examples of use. * ******************************************** make[2]: Leaving directory '/build/reproducible-path/raster3d-3.0-8' make[1]: Leaving directory '/build/reproducible-path/raster3d-3.0-8' dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/raster3d-3.0-8' dh_installchangelogs CHANGELOG make[1]: Leaving directory '/build/reproducible-path/raster3d-3.0-8' dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/raster3d-3.0-8' dh_compress --exclude=.pdb \ --exclude=.r3d \ --exclude=.mol \ --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/raster3d-3.0-8' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'raster3d' in '../raster3d_3.0-8-1_amd64.deb'. dpkg-deb: building package 'raster3d-dbgsym' in '../raster3d-dbgsym_3.0-8-1_amd64.deb'. dpkg-deb: building package 'raster3d-doc' in '../raster3d-doc_3.0-8-1_all.deb'. dpkg-genbuildinfo --build=binary -O../raster3d_3.0-8-1_amd64.buildinfo dpkg-genchanges --build=binary -O../raster3d_3.0-8-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2192672 and its subdirectories I: Current time: Tue Oct 21 10:59:28 -12 2025 I: pbuilder-time-stamp: 1761087568 Tue Oct 21 22:59:29 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Tue Oct 21 22:59:29 UTC 2025 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Tue Oct 21 23:02:07 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. Tue Oct 21 23:02:07 UTC 2025 I: raster3d_3.0-8-1_amd64.changes: Format: 1.8 Date: Wed, 24 Sep 2025 20:58:06 +0200 Source: raster3d Binary: raster3d raster3d-dbgsym raster3d-doc Architecture: amd64 all Version: 3.0-8-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: raster3d - tools for generating images of proteins or other molecules raster3d-doc - documents and example files for Raster3D Closes: 1097773 1105671 Changes: raster3d (3.0-8-1) unstable; urgency=medium . * Team upload. * New upstream version 3.0-8 (Closes: #1097773) * d/copyright: bump upstream copyright year. * d/control: declare compliance to standards version 4.7.2. * d/control: declare raster3d-doc Multi-Arch foreign. * Makefile.diff: unfuzz patch. * fix_bashism.patch: delete: applied upstream. * spelling.patch: delete: applied upstream. * worms_sh.patch: delete: applied upstream. * d/control: remove redundant Rules-Requires-Root. * d/watch: upgrade to version 5 watchfile. * prevent_Makefile.incl_removal.patch: new. This patch avoids cleaning up a file expecte by dpkg-buildpackage when checking for the integrity of upstream source code. * sequence_normal3d_qinp.patch: new. This change fixes random build failures depending on the order in which make recipes are executed. (Closes: #1105671) * d/rules: restore ability for parallel builds. * d/salsa-ci.yml: disable blhc CI for now. Checksums-Sha1: ecbc2300dcd1e417851ec6b8accd60dceecd4da9 205268 raster3d-dbgsym_3.0-8-1_amd64.deb 7403a9a913929abc740b19700a3a1678678f159b 1410636 raster3d-doc_3.0-8-1_all.deb 4d74a0c0bcfb6210c54a38ad0b629a8a2ec3f8b0 7597 raster3d_3.0-8-1_amd64.buildinfo 2c7421e12a28fad0c73f6e11f5e2743bc8c12bfc 1290252 raster3d_3.0-8-1_amd64.deb Checksums-Sha256: 5a9658d4848e440f766aa4139427017758ae1481149d429131d587579dd36474 205268 raster3d-dbgsym_3.0-8-1_amd64.deb 12d3401fc414bc9faef7056e9a33ad4465c333f105aa99483751314d02daba18 1410636 raster3d-doc_3.0-8-1_all.deb f50a74f7f95692903e458887f8b2f82db14ecd5c75ce139470bbb6b58faf2c9c 7597 raster3d_3.0-8-1_amd64.buildinfo 3867a9d578a188c088a5941c31e414c9fb51dca5e1704a84151fa7404f15bb32 1290252 raster3d_3.0-8-1_amd64.deb Files: d372864574016acb1684ef8a606f07c0 205268 debug optional raster3d-dbgsym_3.0-8-1_amd64.deb 18f44cc78a5aaf5074c7cf2358dc26d4 1410636 doc optional raster3d-doc_3.0-8-1_all.deb 51a16373adbcbb255682ff9c7d9f8e2d 7597 science optional raster3d_3.0-8-1_amd64.buildinfo d92ef939dbce18e19f55dfee7c6316e1 1290252 science optional raster3d_3.0-8-1_amd64.deb Tue Oct 21 23:02:08 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_33-86886.service; invocation ID: 819e3212462a4763a5d894765e3051a7 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.umflYmK8/raster3d_3.0-8-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.umflYmK8/raster3d_3.0-8-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.umflYmK8/raster3d_3.0-8-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.umflYmK8/b1/raster3d_3.0-8-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.umflYmK8/b2/raster3d_3.0-8-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 205ms CPU time consumed: 169ms Memory peak: 18M (swap: 0B) Tue Oct 21 23:02:08 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Tue Oct 21 23:02:08 UTC 2025 I: raster3d from forky built successfully and reproducibly on amd64. Tue Oct 21 23:02:09 UTC 2025 I: Removing signed raster3d_3.0-8-1_amd64.buildinfo.asc files: removed './b1/raster3d_3.0-8-1_amd64.buildinfo.asc' removed './b2/raster3d_3.0-8-1_amd64.buildinfo.asc'