Tue Oct 21 04:47:36 UTC 2025 I: starting to build bifrost/forky/arm64 on jenkins on '2025-10-21 04:47' Tue Oct 21 04:47:36 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_11/128029/console.log Tue Oct 21 04:47:36 UTC 2025 I: Downloading source for forky/bifrost=1.3.5-2 --2025-10-21 04:47:36-- http://deb.debian.org/debian/pool/main/b/bifrost/bifrost_1.3.5-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2101 (2.1K) [text/prs.lines.tag] Saving to: ‘bifrost_1.3.5-2.dsc’ 0K .. 100% 255M=0s 2025-10-21 04:47:36 (255 MB/s) - ‘bifrost_1.3.5-2.dsc’ saved [2101/2101] Tue Oct 21 04:47:36 UTC 2025 I: bifrost_1.3.5-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: bifrost Binary: bifrost, libbifrost0, libbifrost-dev Architecture: any Version: 1.3.5-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Homepage: https://github.com/pmelsted/bifrost Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/bifrost Vcs-Git: https://salsa.debian.org/med-team/bifrost.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev Package-List: bifrost deb python optional arch=any libbifrost-dev deb libdevel optional arch=any libbifrost0 deb libs optional arch=any Checksums-Sha1: e9b886fb1b2b0c9d0de3c1c6b1214d34a1800535 356701 bifrost_1.3.5.orig.tar.gz dbc45b57d0e88ca3c1f6ae0b3757c809f81cb177 253928 bifrost_1.3.5-2.debian.tar.xz Checksums-Sha256: e1b2491328b0cc1a32e433a8a9780f05547fa4b8d674b58abdda9ac8809f5341 356701 bifrost_1.3.5.orig.tar.gz ac1de7709581a84c93417fd6e59bb8b4f35e790223cf7a44801f7705ec56f6fe 253928 bifrost_1.3.5-2.debian.tar.xz Files: 99d8b5ca110be5313dd33d2d343f7a26 356701 bifrost_1.3.5.orig.tar.gz 5c6e069544df8f0e0c8a94c63d97a401 253928 bifrost_1.3.5-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmjwtukRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGxVA//bl6PGPfTcfyptT3StXlZPqKs4jzIKE3b Xw+/Vhqi7Y/EMubb1pPHChAlQM5dziqwtYOHmz5FibpW4aNfRf8Wm+g++b1ajQ90 C0k44Oa7NCJ+kJJeIqIiOauEewY8wnCDNSbGd8hLXSTyTJypklp2SwFYnjMsQO4Y kE+MIJiQVnvRhpiYQXSIJ8gGnZuDNiwHuadDw1B17LtRLtwnupSMIwYLFboLPtJt IutKBFa6fZVLThK4ZKQxilcp3IeNLiQBFLHw7hzT+1jCuigGjVCJcD5VBKVHuQ2r SL78DK7L/hMiC2bnxPYwN+17n8347Dzc6NA3xLCdTIHx+prJmzkTcRv9NO1Ey7YF 3Ag/7nXnlLsCB1Ni9WP3fcKWe7oG5qQemN31hKpeGDa8guHI5iLbkvKD53woKhiS u7JoO19eF1VRwlRerFdw23A8IYJyI/XiOOspDz3c6DTlonomaWF/mH3Pkzgr3pN9 PBJRFT73VkVjiVuHW0DZnO7MAIQGh8ua1M1AbckhvO+DMY60AKxCkK+ih6lh0KzQ oylWOv1IWNnV5kx3D5kyKSApc8QBMgTjCsEA2N/4jZKYcZFusMV/3hmsl+l0fAw2 qI18OBA8Yma/bWFJ0A2vG9MiOw8ClxU6xqupcACv4T2lXpvp1diH4JqLfN0e2kU7 APwkVSSwk2E= =llH/ -----END PGP SIGNATURE----- Tue Oct 21 04:47:36 UTC 2025 I: Checking whether the package is not for us Tue Oct 21 04:47:36 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Tue Oct 21 04:47:36 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Tue Oct 21 04:51:09 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 20 16:47:37 -12 2025 I: pbuilder-time-stamp: 1761022057 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bifrost_1.3.5-2.dsc] I: copying [./bifrost_1.3.5.orig.tar.gz] I: copying [./bifrost_1.3.5-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./bifrost_1.3.5-2.dsc: no acceptable signature found dpkg-source: info: extracting bifrost in bifrost-1.3.5 dpkg-source: info: unpacking bifrost_1.3.5.orig.tar.gz dpkg-source: info: unpacking bifrost_1.3.5-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_soname.patch dpkg-source: info: applying 0002-Fix-compilation-error-with-custom-unitig-data.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2971087/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='71d82ea16c8645158456c9d386473c2d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2971087' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PWhlHwv5/pbuilderrc_e1IL --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PWhlHwv5/b1 --logfile b1/build.log bifrost_1.3.5-2.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2971087/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 30.1 MB of archives. After unpacking 114 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-1 [94.3 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 29 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.16.0-4 [368 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get: 50 http://deb.debian.org/debian forky/main arm64 d-shlibs all 0.109 [11.1 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 57 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 30.1 MB in 0s (134 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_arm64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-1_arm64.deb ... Unpacking bsdextrautils (2.41.2-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/bifrost-1.3.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bifrost_1.3.5-2_source.changes dpkg-buildpackage: info: source package bifrost dpkg-buildpackage: info: source version 1.3.5-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.5' dh_auto_configure -- -DCOMPILATION_ARCH=OFF -DCMAKE_POLICY_VERSION_MINIMUM=3.5 cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCOMPILATION_ARCH=OFF -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE Disabling native architecture compilation (including AVX2) Build type: Release Maximum k-mer size: 31 Maximum g-mer size: 31 -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Configuring done (1.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/bifrost-1.3.5' dh_auto_build cd obj-aarch64-linux-gnu && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bifrost-1.3.5 -B/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/CMakeFiles 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'/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bifrost-1.3.5 /build/reproducible-path/bifrost-1.3.5/src /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src/CMakeFiles/bifrost_dynamic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bifrost_dynamic.dir/build.make src/CMakeFiles/bifrost_dynamic.dir/build make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bifrost_static.dir/build.make src/CMakeFiles/bifrost_static.dir/build make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' [ 6%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o [ 6%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o [ 9%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o [ 12%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -c 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-DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/Bifrost.cpp cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/ColorSet.cpp [ 21%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/CompressedCoverage.cpp [ 25%] Building CXX object src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -MF CMakeFiles/bifrost_static.dir/ColorSet.cpp.o.d -o CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/ColorSet.cpp [ 28%] Building CXX object src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/CompressedSequence.cpp [ 31%] Building CXX object src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -MF CMakeFiles/bifrost_static.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/BitContainer.cpp [ 34%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o [ 37%] Building CXX object src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/FASTX_Parser.cpp cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_static.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/Bifrost.cpp cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/BlockedBloomFilter.cpp cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/CompressedCoverage.cpp [ 40%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/CompressedSequence.cpp [ 43%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/GFA_Parser.cpp [ 46%] Building CXX object src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -MF CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o.d -o CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/FASTX_Parser.cpp [ 50%] Building CXX object src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/GFA_Parser.cpp [ 53%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/Kmer.cpp [ 56%] Building CXX object src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_static.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_static.dir/Kmer.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/Kmer.cpp [ 59%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/KmerIterator.cpp [ 62%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/MinimizerIndex.cpp [ 65%] Building CXX object src/CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o -MF CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o.d -o CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/KmerIterator.cpp [ 68%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/TinyBitmap.cpp [ 71%] Building CXX object src/CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/MinimizerIndex.cpp [ 75%] Building CXX object src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/TinyBitmap.cpp [ 78%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/UnitigMap.cpp [ 81%] Building CXX object src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/UnitigMap.cpp [ 84%] Building C object src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/cc -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o -MF CMakeFiles/bifrost_dynamic.dir/roaring.c.o.d -o CMakeFiles/bifrost_dynamic.dir/roaring.c.o -c /build/reproducible-path/bifrost-1.3.5/src/roaring.c [ 87%] Building C object src/CMakeFiles/bifrost_static.dir/roaring.c.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/cc -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/roaring.c.o -MF CMakeFiles/bifrost_static.dir/roaring.c.o.d -o CMakeFiles/bifrost_static.dir/roaring.c.o -c /build/reproducible-path/bifrost-1.3.5/src/roaring.c [ 90%] Linking CXX shared library libbifrost.so cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bifrost_dynamic.dir/link.txt --verbose=1 /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,--dependency-file=CMakeFiles/bifrost_dynamic.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbifrost.so.0 -o libbifrost.so.0 CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o CMakeFiles/bifrost_dynamic.dir/roaring.c.o -lz cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbifrost.so.0 libbifrost.so.0 libbifrost.so make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' [ 90%] Built target bifrost_dynamic make -f src/CMakeFiles/Bifrost.dir/build.make src/CMakeFiles/Bifrost.dir/depend make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bifrost-1.3.5 /build/reproducible-path/bifrost-1.3.5/src /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src/CMakeFiles/Bifrost.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' make -f src/CMakeFiles/Bifrost.dir/build.make src/CMakeFiles/Bifrost.dir/build make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' [ 93%] Building CXX object src/CMakeFiles/Bifrost.dir/Bifrost.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/Bifrost.dir/Bifrost.cpp.o -MF CMakeFiles/Bifrost.dir/Bifrost.cpp.o.d -o CMakeFiles/Bifrost.dir/Bifrost.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/Bifrost.cpp [ 96%] Linking CXX static library libbifrost.a cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bifrost_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bifrost_static.dir/link.txt --verbose=1 /usr/bin/ar qc libbifrost.a CMakeFiles/bifrost_static.dir/Bifrost.cpp.o CMakeFiles/bifrost_static.dir/BitContainer.cpp.o CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o CMakeFiles/bifrost_static.dir/ColorSet.cpp.o CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o CMakeFiles/bifrost_static.dir/Kmer.cpp.o CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o CMakeFiles/bifrost_static.dir/roaring.c.o /usr/bin/ranlib libbifrost.a make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' [ 96%] Built target bifrost_static [100%] Linking CXX executable Bifrost cd /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bifrost.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/Bifrost.dir/link.d CMakeFiles/Bifrost.dir/Bifrost.cpp.o -o Bifrost -Wl,-rpath,/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/src: libbifrost.so.0 -lz make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' [100%] Built target Bifrost make[2]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/bifrost-1.3.5/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bifrost-1.3.5 -B/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/bin/Bifrost -- Set non-toolchain portion of runtime path of "/build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/bin/Bifrost" to "" -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/lib/libbifrost.so.0 -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/lib/libbifrost.so -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/lib/libbifrost.a -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/BitContainer.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/BlockedBloomFilter.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/ColorSet.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/ColoredCDBG.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/ColoredCDBG.tcc -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/Common.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/CompactedDBG.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/CompactedDBG.tcc -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/CompressedCoverage.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/CompressedSequence.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/DataAccessor.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/DataAccessor.tcc -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/DataManager.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/DataStorage.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/DataStorage.tcc -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/FASTX_Parser.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/File_Parser.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/GFA_Parser.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/IO.tcc -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/Kmer.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/KmerCovIndex.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/KmerCovIndex.tcc -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/KmerHashTable.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/KmerIterator.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/KmerStream.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/Lock.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/MinimizerIndex.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/NeighborIterator.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/NeighborIterator.tcc -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/RepHash.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/Search.tcc -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/StreamCounter.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/TinyBitmap.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/TinyVector.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/Unitig.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/UnitigIterator.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/UnitigIterator.tcc -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/UnitigMap.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/UnitigMap.tcc -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/fastmod.h -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/getRSS.h -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/kseq.h -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/libpopcnt.h -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/minHashIterator.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/roaring.h -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/roaring.hh -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/rw_spin_lock.h -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/strict_fstream.hpp -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/wyhash.h -- Installing: /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/include/bifrost/zstr.hpp make[1]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.5' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbifrost-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libbifrost0/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/libbifrost.a debian/libbifrost-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/libbifrost.la debian/libbifrost-dev/usr/lib/aarch64-linux-gnu || true mv debian/tmp/usr/lib/libbifrost.so debian/libbifrost-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/bifrost-1.3.5/debian/tmp/usr/lib/libbifrost.so.0 debian/libbifrost0/usr/lib/aarch64-linux-gnu PKGDEV=libbifrost-dev PKGSHL=libbifrost0 install -d -m 755 debian/libbifrost-dev/usr/include mv debian/tmp/usr/include/bifrost debian/libbifrost-dev/usr/include mv: cannot stat 'debian/tmp/usr/lib/libbifrost.la': No such file or directory make[1]: Leaving directory '/build/reproducible-path/bifrost-1.3.5' dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libbifrost-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libbifrost-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'bifrost-dbgsym' in '../bifrost-dbgsym_1.3.5-2_arm64.deb'. dpkg-deb: building package 'libbifrost0' in '../libbifrost0_1.3.5-2_arm64.deb'. dpkg-deb: building package 'libbifrost0-dbgsym' in '../libbifrost0-dbgsym_1.3.5-2_arm64.deb'. dpkg-deb: building package 'libbifrost-dev' in '../libbifrost-dev_1.3.5-2_arm64.deb'. dpkg-deb: building package 'bifrost' in '../bifrost_1.3.5-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../bifrost_1.3.5-2_arm64.buildinfo dpkg-genchanges --build=binary -O../bifrost_1.3.5-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2971087 and its subdirectories I: Current time: Mon Oct 20 16:51:08 -12 2025 I: pbuilder-time-stamp: 1761022268 Tue Oct 21 04:51:09 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Tue Oct 21 04:51:09 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Tue Oct 21 04:53:36 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Tue Oct 21 04:53:36 UTC 2025 I: bifrost_1.3.5-2_arm64.changes: Format: 1.8 Date: Thu, 16 Oct 2025 11:07:24 +0200 Source: bifrost Binary: bifrost bifrost-dbgsym libbifrost-dev libbifrost0 libbifrost0-dbgsym Architecture: arm64 Version: 1.3.5-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: bifrost - parallel construction, indexing and querying of de Bruijn graphs libbifrost-dev - static library and header files for libbifrost libbifrost0 - library for parallel construction, indexing and querying of de Br Closes: 1112726 Changes: bifrost (1.3.5-2) unstable; urgency=medium . * d/watch: version=5 * Fix build with CMake 4 Closes: #1112726 * Standards-Version: 4.7.2 (routine-update) * debputy lint --auto-fix (routine-update) Checksums-Sha1: b44e5fb7aab37ea0411d6afb6f1942210af06942 3189524 bifrost-dbgsym_1.3.5-2_arm64.deb 81f455b381604276bd6c64e04955036c89e26855 7059 bifrost_1.3.5-2_arm64.buildinfo 958bb0927aa20444f43007775dd838a71fe268f5 516592 bifrost_1.3.5-2_arm64.deb cf1ea78120b8b3a9f8ba6324d88a7ae8e15fcc9f 623220 libbifrost-dev_1.3.5-2_arm64.deb bd103eb00dbdb0fca5eda1d42718bac834377db3 4178852 libbifrost0-dbgsym_1.3.5-2_arm64.deb 7a171c3cdc0b4a09266aea4b16d8dbdf26c73660 421248 libbifrost0_1.3.5-2_arm64.deb Checksums-Sha256: 32a82ee22f23d524bb9c0fb39d34afb2b627abb9054dd9c875d337690e2172e4 3189524 bifrost-dbgsym_1.3.5-2_arm64.deb d9a4611123612f7c94461041d5479fe1ef772a6cf77606c60d0a6485eb6b6429 7059 bifrost_1.3.5-2_arm64.buildinfo a56b1544c42660b766930f278a2f0c6b43bf90ea3d22f492022c49c85d241cda 516592 bifrost_1.3.5-2_arm64.deb a1bf610e516226b6b2c7eabf2080bdf742f9224b80f1eb3fab5950c428579732 623220 libbifrost-dev_1.3.5-2_arm64.deb f2f3f29d0f8807b30fef5c707b1c85c01430ab227833ec2baa4c3e46d757d500 4178852 libbifrost0-dbgsym_1.3.5-2_arm64.deb 99ded4ebacdb4521004ca7ea148ff8ed316a40c2b8c6a0e57d9fda8380bee6c6 421248 libbifrost0_1.3.5-2_arm64.deb Files: fa0e19e5aa0a6e67ed40273c8890ffa5 3189524 debug optional bifrost-dbgsym_1.3.5-2_arm64.deb a7e4bf3817dfd0aa49caf6d121e184ad 7059 python optional bifrost_1.3.5-2_arm64.buildinfo c9c9dceb0d455e58b3fdc16034a5f598 516592 python optional bifrost_1.3.5-2_arm64.deb 41d5a458f98998ba0a2770070dbe729f 623220 libdevel optional libbifrost-dev_1.3.5-2_arm64.deb 71fcecfdf7699e62802df45ed6eafdad 4178852 debug optional libbifrost0-dbgsym_1.3.5-2_arm64.deb 07cfba9c0bb8ba368fdecc6801d12a22 421248 libs optional libbifrost0_1.3.5-2_arm64.deb Tue Oct 21 04:53:38 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_11-128029.service; invocation ID: 306df2a89d544971ac768ef94501ffe8 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.PWhlHwv5/bifrost_1.3.5-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.PWhlHwv5/bifrost_1.3.5-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.PWhlHwv5/bifrost_1.3.5-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.PWhlHwv5/b1/bifrost_1.3.5-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.PWhlHwv5/b2/bifrost_1.3.5-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 212ms CPU time consumed: 174ms Memory peak: 17.5M (swap: 0B) Tue Oct 21 04:53:38 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Tue Oct 21 04:53:38 UTC 2025 I: bifrost from forky built successfully and reproducibly on arm64. Tue Oct 21 04:53:39 UTC 2025 I: Removing signed bifrost_1.3.5-2_arm64.buildinfo.asc files: removed './b1/bifrost_1.3.5-2_arm64.buildinfo.asc' removed './b2/bifrost_1.3.5-2_arm64.buildinfo.asc'