Tue Aug 19 07:21:32 UTC 2025 I: starting to build gatb-core/forky/arm64 on jenkins on '2025-08-19 07:21' Tue Aug 19 07:21:32 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_11/118484/console.log Tue Aug 19 07:21:32 UTC 2025 I: Downloading source for forky/gatb-core=1.4.2+dfsg-13 --2025-08-19 07:21:32-- http://deb.debian.org/debian/pool/main/g/gatb-core/gatb-core_1.4.2%2bdfsg-13.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2700 (2.6K) [text/prs.lines.tag] Saving to: ‘gatb-core_1.4.2+dfsg-13.dsc’ 0K .. 100% 330M=0s 2025-08-19 07:21:32 (330 MB/s) - ‘gatb-core_1.4.2+dfsg-13.dsc’ saved [2700/2700] Tue Aug 19 07:21:32 UTC 2025 I: gatb-core_1.4.2+dfsg-13.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: gatb-core Binary: gatb-core, libgatbcore3, libgatbcore-dev, gatb-core-testdata Architecture: any-amd64 arm64 loong64 mips64el ppc64el ia64 ppc64 riscv64 sparc64 alpha all Version: 1.4.2+dfsg-13 Maintainer: Debian Med Packaging Team Uploaders: Nadiya Sitdykova , Andreas Tille Homepage: https://github.com/GATB/gatb-core Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/gatb-core Vcs-Git: https://salsa.debian.org/med-team/gatb-core.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, libhdf5-dev, libopenmpi-dev, pkg-config Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz Package-List: gatb-core deb science optional arch=any-amd64,arm64,loong64,mips64el,ppc64el,ia64,ppc64,riscv64,sparc64,alpha gatb-core-testdata deb science optional arch=all libgatbcore-dev deb libdevel optional arch=any-amd64,arm64,loong64,mips64el,ppc64el,ia64,ppc64,riscv64,sparc64,alpha libgatbcore3 deb libs optional arch=any-amd64,arm64,loong64,mips64el,ppc64el,ia64,ppc64,riscv64,sparc64,alpha Checksums-Sha1: cd277a39a042d1b5b3dfdf0b0196b748b7fdb301 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz ab905ac70c7c0039ec6bd5f97d9f02ab790b8e29 105300 gatb-core_1.4.2+dfsg-13.debian.tar.xz Checksums-Sha256: cc72101654da4254253c3c74f02651e3b2cfbf49af95a849d21efdb13481fc66 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz 4152dcb11fb01aa065a437ee50aaa4950ea9d9cfd3765c4d2f02b4d8aedfe49b 105300 gatb-core_1.4.2+dfsg-13.debian.tar.xz Files: ac56735b1e461083d9830d8e1c2a9108 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz 630d851c68b61f192be5a7dee42e3faa 105300 gatb-core_1.4.2+dfsg-13.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWdrXMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHHQhAAkBUbRQFcMHPc6599uXiRDngUdo7fLefp 1DNBVLeDr1xHcxdXnm9ErjLHkeQzJyniMEY0YGhGNQX3RnlFtMg6dpWH2xEKVSgF GWTMXGlOQyY49S8HetLN8hzgFfQw/o0b5v5FtVGLcs53tnQw+yAtPaavU9H4HKnN /z/oY1aDgJBpp+y7crEBDSX1/M3mTGc7IZ3lTxKbT1uzHIhdc6eJBWKUG171bFI+ jE2W3SuJED6gBF+6aXZooAxsNFY8VjsItiwDn/MJD69YxZgmpmEJKiQyPiDD/SKa XDnZhr8zvrLvZL0FhK2xrfFvUY8dOA0DVTeCHCz3c3HY0zFdtnA26h+opAgDCKKq Rt7Sqya4DathCclpuW8Q4KuR4esOeYsWCRfB5di5uUfK+n6IMVplmEG08witbg+a 4lF/Ci0uz6DrlzTllvXtwfz7k7qCHwcGsg3iTcTfZVYSUoMp6adBp0lQUHcCGItF ZAlqhyjmqTXuFXtaX8bEEBGmDyXy0QuNgNQ8ANvNv7cXvjSfKVOMAxrSaKnySICt B7yzj9K3Aptz0krM6/uIT2pgoTjYglix0o8Lgbb9pf6t1Ee9HwwpTKxNjr6d0NWe FOujaNNeG9aPdqY387Qn7eduVOsc10nZHcgUN0cQU1w30aLnVe/Hl0SPqlZH64iw alpr6haaHvc= =4fyT -----END PGP SIGNATURE----- Tue Aug 19 07:21:32 UTC 2025 I: Checking whether the package is not for us Tue Aug 19 07:21:32 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Tue Aug 19 07:21:32 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Tue Aug 19 07:28:08 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 18 19:21:34 -12 2025 I: pbuilder-time-stamp: 1755588094 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [gatb-core_1.4.2+dfsg-13.dsc] I: copying [./gatb-core_1.4.2+dfsg.orig.tar.xz] I: copying [./gatb-core_1.4.2+dfsg-13.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./gatb-core_1.4.2+dfsg-13.dsc: no acceptable signature found dpkg-source: info: extracting gatb-core in gatb-core-1.4.2+dfsg dpkg-source: info: unpacking gatb-core_1.4.2+dfsg.orig.tar.xz dpkg-source: info: unpacking gatb-core_1.4.2+dfsg-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_hdf5.patch dpkg-source: info: applying fix_hdf5_includes.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying fix_install_location.patch dpkg-source: info: applying set_soversion.patch dpkg-source: info: applying dynamic_linking_of_tools.patch dpkg-source: info: applying multiarch.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying avoid_-msse dpkg-source: info: applying use-int-as-return-of-fgetc.patch dpkg-source: info: applying gatbCoreCompileMinia.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1032962/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='87ae47338ee34d5c9f0b7a36f7079bcc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1032962' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vT3S9gem/pbuilderrc_eeP6 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vT3S9gem/b1 --logfile b1/build.log gatb-core_1.4.2+dfsg-13.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.41+deb13-cloud-arm64 #1 SMP Debian 6.12.41-1 (2025-08-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1032962/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20004 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libcppunit-dev; however: Package libcppunit-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libjsoncpp-dev; however: Package libjsoncpp-dev is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libabsl20240722{a} libaec-dev{a} libaec0{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libarchive13t64{a} libavif16{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcppunit-1.15-0{a} libcppunit-dev{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libidn2-0{a} libidn2-dev{a} libimagequant0{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblab-gamut1{a} libldap-dev{a} libldap2{a} liblerc4{a} libllvm19{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} librav1e0.7{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsvtav1enc2{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2-16{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyuv0{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-liberation krb5-locales libarchive-cpio-perl libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 184 newly installed, 0 to remove and 0 not upgraded. Need to get 131 MB of archives. After unpacking 687 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-1 [93.8 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 cmake-data all 3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.1 [583 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 27 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-3 [108 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.9-3 [1375 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.14.1-2 [359 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 cmake arm64 3.31.6-2 [9906 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 d-shlibs all 0.109 [11.1 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.25 [91.6 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-4 [539 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 56 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 debhelper all 13.25 [937 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libllvm19 arm64 1:19.1.7-3+b2 [23.3 MB] Get: 65 http://deb.debian.org/debian forky/main arm64 libclang-cpp19 arm64 1:19.1.7-3+b2 [12.0 MB] Get: 66 http://deb.debian.org/debian forky/main arm64 libclang1-19 arm64 1:19.1.7-3+b2 [6857 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libfmt10 arm64 10.1.1+ds1-4 [121 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 doxygen arm64 1.9.8+ds-2.1 [4519 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 fontconfig-config arm64 2.15.0-2.3 [318 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 libfontconfig1 arm64 2.15.0-2.3 [387 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 fontconfig arm64 2.15.0-2.3 [463 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libann0 arm64 1.1.2+doc-9+b2 [24.1 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libcdt5 arm64 2.42.4-3 [39.2 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libcgraph6 arm64 2.42.4-3 [61.1 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libaom3 arm64 3.12.1-1 [1670 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libdav1d7 arm64 1.5.1-1 [252 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libabsl20240722 arm64 20240722.0-4 [452 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libgav1-1 arm64 0.19.0-3+b1 [491 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 librav1e0.7 arm64 0.7.1-9+b2 [662 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 libsvtav1enc2 arm64 2.3.0+dfsg-1 [1558 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 libyuv0 arm64 0.0.1904.20250204-1 [137 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libavif16 arm64 1.2.1-1.2 [125 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 libheif-plugin-dav1d arm64 1.19.8-1 [11.6 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libde265-0 arm64 1.0.16-1 [153 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 libheif-plugin-libde265 arm64 1.19.8-1 [15.1 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 libheif1 arm64 1.19.8-1 [442 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 97 http://deb.debian.org/debian forky/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 98 http://deb.debian.org/debian forky/main arm64 libtiff6 arm64 4.7.0-3 [325 kB] Get: 99 http://deb.debian.org/debian forky/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 100 http://deb.debian.org/debian forky/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 101 http://deb.debian.org/debian forky/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 102 http://deb.debian.org/debian forky/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 103 http://deb.debian.org/debian forky/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 104 http://deb.debian.org/debian forky/main arm64 libxpm4 arm64 1:3.5.17-1+b3 [53.4 kB] Get: 105 http://deb.debian.org/debian forky/main arm64 libgd3 arm64 2.3.3-13 [115 kB] Get: 106 http://deb.debian.org/debian forky/main arm64 libglib2.0-0t64 arm64 2.84.3-1 [1426 kB] Get: 107 http://deb.debian.org/debian forky/main arm64 libgts-0.7-5t64 arm64 0.7.6+darcs121130-5.2+b1 [145 kB] Get: 108 http://deb.debian.org/debian forky/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 109 http://deb.debian.org/debian forky/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 110 http://deb.debian.org/debian forky/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 111 http://deb.debian.org/debian forky/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 112 http://deb.debian.org/debian forky/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 113 http://deb.debian.org/debian forky/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 114 http://deb.debian.org/debian forky/main arm64 libltdl7 arm64 2.5.4-4 [415 kB] Get: 115 http://deb.debian.org/debian forky/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 116 http://deb.debian.org/debian forky/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 117 http://deb.debian.org/debian forky/main arm64 libharfbuzz0b arm64 10.2.0-1+b1 [442 kB] Get: 118 http://deb.debian.org/debian forky/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 119 http://deb.debian.org/debian forky/main arm64 libdatrie1 arm64 0.2.13-4 [37.4 kB] Get: 120 http://deb.debian.org/debian forky/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 121 http://deb.debian.org/debian forky/main arm64 libpango-1.0-0 arm64 1.56.3-1 [213 kB] Get: 122 http://deb.debian.org/debian forky/main arm64 libpangoft2-1.0-0 arm64 1.56.3-1 [52.9 kB] Get: 123 http://deb.debian.org/debian forky/main arm64 libpangocairo-1.0-0 arm64 1.56.3-1 [33.7 kB] Get: 124 http://deb.debian.org/debian forky/main arm64 libpathplan4 arm64 2.42.4-3 [41.2 kB] Get: 125 http://deb.debian.org/debian forky/main arm64 libgvc6 arm64 2.42.4-3 [629 kB] Get: 126 http://deb.debian.org/debian forky/main arm64 libgvpr2 arm64 2.42.4-3 [181 kB] Get: 127 http://deb.debian.org/debian forky/main arm64 liblab-gamut1 arm64 2.42.4-3 [198 kB] Get: 128 http://deb.debian.org/debian forky/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 129 http://deb.debian.org/debian forky/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 130 http://deb.debian.org/debian forky/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Get: 131 http://deb.debian.org/debian forky/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b2 [173 kB] Get: 132 http://deb.debian.org/debian forky/main arm64 libxmu6 arm64 2:1.1.3-3+b4 [55.7 kB] Get: 133 http://deb.debian.org/debian forky/main arm64 libxaw7 arm64 2:1.0.16-1 [195 kB] Get: 134 http://deb.debian.org/debian forky/main arm64 graphviz arm64 2.42.4-3 [572 kB] Get: 135 http://deb.debian.org/debian forky/main arm64 hdf5-helpers arm64 1.14.5+repack-3 [26.6 kB] Get: 136 http://deb.debian.org/debian forky/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 137 http://deb.debian.org/debian forky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 138 http://deb.debian.org/debian forky/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 139 http://deb.debian.org/debian forky/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 140 http://deb.debian.org/debian forky/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 141 http://deb.debian.org/debian forky/main arm64 libaec0 arm64 1.1.4-2 [22.6 kB] Get: 142 http://deb.debian.org/debian forky/main arm64 libsz2 arm64 1.1.4-2 [8072 B] Get: 143 http://deb.debian.org/debian forky/main arm64 libaec-dev arm64 1.1.4-2 [20.3 kB] Get: 144 http://deb.debian.org/debian forky/main arm64 libboost1.83-dev arm64 1.83.0-4.2 [10.6 MB] Get: 145 http://deb.debian.org/debian forky/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 146 http://deb.debian.org/debian forky/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 147 http://deb.debian.org/debian forky/main arm64 libcppunit-1.15-0 arm64 1.15.1-4+b2 [141 kB] Get: 148 http://deb.debian.org/debian forky/main arm64 libcppunit-dev arm64 1.15.1-4+b2 [202 kB] Get: 149 http://deb.debian.org/debian forky/main arm64 libidn2-dev arm64 2.3.8-3 [102 kB] Get: 150 http://deb.debian.org/debian forky/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 151 http://deb.debian.org/debian forky/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 152 http://deb.debian.org/debian forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 153 http://deb.debian.org/debian forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 154 http://deb.debian.org/debian forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 155 http://deb.debian.org/debian forky/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 156 http://deb.debian.org/debian forky/main arm64 libnghttp3-dev arm64 1.8.0-1 [89.4 kB] Get: 157 http://deb.debian.org/debian forky/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 158 http://deb.debian.org/debian forky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get: 159 http://deb.debian.org/debian forky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get: 160 http://deb.debian.org/debian forky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 161 http://deb.debian.org/debian forky/main arm64 libunbound8 arm64 1.22.0-2 [553 kB] Get: 162 http://deb.debian.org/debian forky/main arm64 libgnutls-dane0t64 arm64 3.8.9-3 [453 kB] Get: 163 http://deb.debian.org/debian forky/main arm64 libgnutls-openssl27t64 arm64 3.8.9-3 [453 kB] Get: 164 http://deb.debian.org/debian forky/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 165 http://deb.debian.org/debian forky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 166 http://deb.debian.org/debian forky/main arm64 nettle-dev arm64 3.10.1-1 [1325 kB] Get: 167 http://deb.debian.org/debian forky/main arm64 libgnutls28-dev arm64 3.8.9-3 [1416 kB] Get: 168 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 169 http://deb.debian.org/debian forky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 170 http://deb.debian.org/debian forky/main arm64 libssl-dev arm64 3.5.1-1 [3385 kB] Get: 171 http://deb.debian.org/debian forky/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 172 http://deb.debian.org/debian forky/main arm64 libzstd-dev arm64 1.5.7+dfsg-1 [335 kB] Get: 173 http://deb.debian.org/debian forky/main arm64 libcurl4-openssl-dev arm64 8.14.1-2 [495 kB] Get: 174 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-1 [370 kB] Get: 175 http://deb.debian.org/debian forky/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Get: 176 http://deb.debian.org/debian forky/main arm64 libhdf5-cpp-310 arm64 1.14.5+repack-3 [121 kB] Get: 177 http://deb.debian.org/debian forky/main arm64 libhdf5-fortran-310 arm64 1.14.5+repack-3 [110 kB] Get: 178 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [66.1 kB] Get: 179 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-3 [42.1 kB] Get: 180 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-3 [24.4 kB] Get: 181 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Get: 182 http://deb.debian.org/debian forky/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Get: 183 http://deb.debian.org/debian forky/main arm64 libhdf5-dev arm64 1.14.5+repack-3 [3225 kB] Get: 184 http://deb.debian.org/debian forky/main arm64 libjsoncpp-dev arm64 1.9.6-3 [25.0 kB] Fetched 131 MB in 1s (190 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20004 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-9_arm64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.41.1-1_arm64.deb ... Unpacking bsdextrautils (2.41.1-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../018-cmake-data_3.31.6-2_all.deb ... Unpacking cmake-data (3.31.6-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../019-libxml2-16_2.14.5+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../020-libarchive13t64_3.7.4-4+b1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-4+b1) ... Selecting previously unselected package libbrotli1:arm64. 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Setting up libidn2-0:arm64 (2.3.8-3) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up libglib2.0-0t64:arm64 (2.84.3-1) ... No schema files found: doing nothing. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libldap-dev:arm64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.8-3) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libgvpr2:arm64 (2.42.4-3) ... Setting up groff-base (1.23.0-9) ... Setting up libharfbuzz0b:arm64 (10.2.0-1+b1) ... Setting up libgts-0.7-5t64:arm64 (0.7.6+darcs121130-5.2+b1) ... Setting up libfontconfig1:arm64 (2.15.0-2.3) ... Setting up libsm6:arm64 (2:1.2.6-1) ... Setting up libp11-kit-dev:arm64 (0.25.5-3) ... Setting up libclang-cpp19 (1:19.1.7-3+b2) ... 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Setting up libxmu6:arm64 (2:1.1.3-3+b4) ... Setting up libcurl4t64:arm64 (8.14.1-2) ... Setting up libkdb5-10t64:arm64 (1.21.3-5) ... Setting up debhelper (13.25) ... Setting up libxaw7:arm64 (2:1.0.16-1) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-5) ... Setting up cmake (3.31.6-2) ... Setting up libhdf5-fortran-310:arm64 (1.14.5+repack-3) ... Setting up krb5-multidev:arm64 (1.21.3-5) ... Setting up libhdf5-cpp-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... Setting up libkrb5-dev:arm64 (1.21.3-5) ... Setting up libcurl4-openssl-dev:arm64 (8.14.1-2) ... Setting up libhdf5-hl-cpp-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-hl-fortran-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-dev (1.14.5+repack-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libheif-plugin-dav1d:arm64 (1.19.8-1) ... Setting up libheif-plugin-libde265:arm64 (1.19.8-1) ... Setting up libheif1:arm64 (1.19.8-1) ... Setting up libgd3:arm64 (2.3.3-13) ... Setting up libgvc6 (2.42.4-3) ... Setting up graphviz (2.42.4-3) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/gatb-core-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatb-core_1.4.2+dfsg-13_source.changes dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.2+dfsg-13 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --sourcedirectory=gatb-core dh_auto_clean -O--sourcedirectory=gatb-core dh_autoreconf_clean -O--sourcedirectory=gatb-core dh_clean -O--sourcedirectory=gatb-core debian/rules binary dh binary --sourcedirectory=gatb-core dh_update_autotools_config -O--sourcedirectory=gatb-core dh_autoreconf -O--sourcedirectory=gatb-core debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_auto_configure -- cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu ../gatb-core CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CppUnit: found headers (in /usr/include) but not the static library (/usr/include/../lib/libcppunit.a) -- CppUnit FOUND (/usr/include) -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed -- Check size of __uint128_t -- Check size of __uint128_t - done -- Options: -std=c++11 -Wno-invalid-offsetof -- Found HDF5: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/aarch64-linux-gnu/libcrypto.so;/usr/lib/aarch64-linux-gnu/libcurl.so;/usr/lib/aarch64-linux-gnu/libpthread.a;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.a;/usr/lib/aarch64-linux-gnu/libm.so (found version "1.14.5") -- HDF5_LIBRARIES="/usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so/usr/lib/aarch64-linux-gnu/libcrypto.so/usr/lib/aarch64-linux-gnu/libcurl.so/usr/lib/aarch64-linux-gnu/libpthread.a/usr/lib/aarch64-linux-gnu/libsz.so/usr/lib/aarch64-linux-gnu/libz.so/usr/lib/aarch64-linux-gnu/libdl.a/usr/lib/aarch64-linux-gnu/libm.so" -- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation CMake Warning (dev) at CMakeLists.txt:199 (set): Cannot set "gatb-core-klist": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------- GATB TESTS ---------- -- ---------- GATB TOOLS ---------- DYNAMIC BINARIES for dbgh5 DYNAMIC BINARIES for dbginfo DYNAMIC BINARIES for leon -- Found HDF5: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/aarch64-linux-gnu/libcrypto.so;/usr/lib/aarch64-linux-gnu/libcurl.so;/usr/lib/aarch64-linux-gnu/libpthread.a;/usr/lib/aarch64-linux-gnu/libsz.so;/usr/lib/aarch64-linux-gnu/libz.so;/usr/lib/aarch64-linux-gnu/libdl.a;/usr/lib/aarch64-linux-gnu/libm.so (found version "1.14.5") found components: C CMake Warning (dev) at thirdparty/CMakeLists.txt:40 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/CMakeLists.txt:42 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/CMakeLists.txt:44 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/CMakeLists.txt:45 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:225 (set): Cannot set "gatb-core-flags": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:226 (set): Cannot set "gatb-core-includes": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:227 (set): Cannot set "gatb-core-libraries": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:228 (set): Cannot set "gatb-core-cmake": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot -- Configuring done (2.8s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_auto_build -a cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core -B/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/depend make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/depend make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/thirdparty /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/build make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None/json make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o [ 1%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o [ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o [ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o [ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None/BooPHF [ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/BooPHF/BooPHF.h /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None/BooPHF/ cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/json/json.hpp /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None/json/ make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Built target thirdparty_copy [ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function 'virtual void gatb::core::bank::impl::BankBinary::Iterator::next()': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp [ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp [ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd 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CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp [ 13%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial 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13%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c 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CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:24, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial 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src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:24, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial 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src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp [ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 23%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 23%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ 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src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -c 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CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ModelData.cpp [ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 30%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial 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Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/System.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial 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src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c 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src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o.d -o 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && 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-ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp [ 78%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include 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/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp [ 79%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp [ 79%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 79%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp [ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp [ 81%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -MF 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp [ 85%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 85%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 85%] Linking CXX shared library ../lib/None/libgatbcore.so cd 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"CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cp[ 86%] Linking CXX static library ../lib/None/libgatbcore.a cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/None/libgatbcore.a "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o" 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"CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o" "CMakeFiles/gatbcore-static.p.in_64.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o" cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target gatbcore-dynamic dir/gatb/tools/misc/impl/Tool.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o" /usr/bin/ranlib ../lib/None/libgatbcore.a make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target gatbcore-static make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/depend make -f tools/CMakeFiles/dbgh5.dir/build.make tools/CMakeFiles/dbgh5.dir/depend make -f 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make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/leon.dir/build.make tools/CMakeFiles/leon.dir/build make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/build make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/build make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 87%] Building CXX object tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o [ 88%] Building CXX object tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/tools && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o -MF CMakeFiles/dbgh5.dir/dbgh5.cpp.o.d -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbgh5.cpp [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/tools && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o -MF CMakeFiles/dbginfo.dir/dbginfo.cpp.o.d -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbginfo.cpp cd 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test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/kmer/TestDSK.cpp [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong 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test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/kmer/TestKmer.cpp [ 93%] Linking CXX executable ../bin/None/leon cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/leon.dir/link.txt --verbose=1 [ 93%] Linking CXX executable ../bin/None/dbginfo cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 [ 93%] Linking CXX executable ../bin/None/dbgh5 cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. 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test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/tools/storage/TestStorage.cpp [100%] Linking CXX executable ../../bin/None/gatb-core-cppunit cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu/test/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatb-core-cppunit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/gatb-core-cppunit.dir/link.d "CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o" -o ../../bin/None/gatb-core-cppunit -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/serial: ../../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libpthread.a /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/aarch64-linux-gnu/libcppunit.so make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' [100%] Built target 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Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' echo "Nothing to do here" Nothing to do here make[1]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_auto_install -O--sourcedirectory=gatb-core -Ngatb-core-testdata cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/gatb-core-1.4.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core -B/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' 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/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/MemoryCommon.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemMacos.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemLinux.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/types.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config_sha1.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ITime.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IThread.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISystemInfo.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISmartPointer.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IMemory.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IFileSystem.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/Exception.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/SortingCountAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Sequence2SuperKmer.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/RepartitionAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartitionsCommand.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartiInfo.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.pri -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/MPHFAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/LinearCounter.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomMinimizerAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithmFactory.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.pri -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorSolidity.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorProxy.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorHistogram.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorDump.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorCutoff.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorChain.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorAbstract.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessor.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/ConfigurationAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Configuration.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomBuilder.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmers.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmerIterator.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api/IModel.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api/ICountProcessor.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/gatb_core.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/GraphUnitigs.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Graph.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/rank_vector.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/dag_vector.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/UnitigsConstructionAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Traversal.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Terminator.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Simplifications.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/NodesDeleter.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/LinkTigs.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/IterativeExtensions.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Frontline.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ExtremityInfo.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ContainerNode.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/BranchingAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api/IContainerNode.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2 -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/unionFind.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ographBin.h -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ograph.h -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/logging.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/binSeq.h -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/bglue_algo.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/bcalm_algo.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ThreadPool.h -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Banks.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankStrings.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankSplitter.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankRandom.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankHelpers.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankFasta.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankConverterAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankComposite.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankBinary.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankAlbum.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Bank.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Alphabet.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/AbstractBank.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/Sequence.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/IBank.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/IAlphabet.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test/gatb-core-cppunit -- Set non-toolchain portion of runtime path of "/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test/gatb-core-cppunit" to "" -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample2.fa -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa.gz -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq.gz -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads3.fa.gz -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads2.fa -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1_list_ids.txt -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa.gz -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa.gz -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/microsnp.fa -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq.leon-ref -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq.leon-ref -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/celegans_reads.h5 -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/album.txt -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/README.md -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbgh5 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbgh5" to "" -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbginfo -- Set non-toolchain portion of runtime path of "/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbginfo" to "" -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/leon -- Set non-toolchain portion of runtime path of "/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/leon" to "" -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/BooPHF -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/BooPHF/BooPHF.h make[1]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-aarch64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev gatb-core/cmake usr/lib \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgatbcore-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libgatbcore3/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libgatbcore.a debian/libgatbcore-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libgatbcore.so debian/libgatbcore-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 debian/libgatbcore3/usr/lib/aarch64-linux-gnu PKGDEV=libgatbcore-dev PKGSHL=libgatbcore3 install -d -m 755 debian/libgatbcore-dev/usr mv debian/tmp/usr/include debian/libgatbcore-dev/usr install -d -m 755 debian/libgatbcore-dev/usr/lib/aarch64-linux-gnu mv gatb-core/cmake debian/libgatbcore-dev/usr/lib/aarch64-linux-gnu mkdir -p debian/gatb-core/usr/lib/gatb-core dh_install -a make[1]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_install -O--sourcedirectory=gatb-core -Ngatb-core -Nlibgatbcore3 -Nlibgatbcore-dev dh_installdocs -O--sourcedirectory=gatb-core dh_installchangelogs -O--sourcedirectory=gatb-core dh_installexamples -O--sourcedirectory=gatb-core dh_installman -O--sourcedirectory=gatb-core dh_installsystemduser -O--sourcedirectory=gatb-core dh_perl -O--sourcedirectory=gatb-core dh_link -O--sourcedirectory=gatb-core dh_strip_nondeterminism -O--sourcedirectory=gatb-core dh_compress -O--sourcedirectory=gatb-core dh_fixperms -O--sourcedirectory=gatb-core debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' # test data are installed manually from main source to enable Architecture all builds rm -rf debian/tmp/usr/test/db dh_missing make[1]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_dwz -a -O--sourcedirectory=gatb-core dh_strip -a -O--sourcedirectory=gatb-core debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_makeshlibs # For whatever reason some symbol version has added Debian revision which leads to # E: libgatbcore3: symbols-file-contains-current-version-with-debian-revision on symbol _ZNSt6vectorImSaImEE9push_backERKm@Base (libgatbcore.so.3) [symbols] # This override is cleaning up the symbols file find debian -name "*symbols*" -exec sed -i 's/+dfsg-[0-9]\+$//' \{\} \; make[1]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_shlibdeps -a -O--sourcedirectory=gatb-core dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: symbol H5Fopen used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Tclose used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Sget_simple_extent_dims used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol gzbuffer used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_NATIVE_UINT8_g used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_NATIVE_UINT16_g used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Dwrite used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Adelete used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Gcreate2 used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Gclose used by debian/libgatbcore3/usr/lib/aarch64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: 55 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--sourcedirectory=gatb-core dh_gencontrol -O--sourcedirectory=gatb-core dh_md5sums -O--sourcedirectory=gatb-core dh_builddeb -O--sourcedirectory=gatb-core dpkg-deb: building package 'gatb-core-dbgsym' in '../gatb-core-dbgsym_1.4.2+dfsg-13_arm64.deb'. dpkg-deb: building package 'gatb-core' in '../gatb-core_1.4.2+dfsg-13_arm64.deb'. dpkg-deb: building package 'libgatbcore3' in '../libgatbcore3_1.4.2+dfsg-13_arm64.deb'. dpkg-deb: building package 'libgatbcore-dev' in '../libgatbcore-dev_1.4.2+dfsg-13_arm64.deb'. dpkg-deb: building package 'libgatbcore3-dbgsym' in '../libgatbcore3-dbgsym_1.4.2+dfsg-13_arm64.deb'. dpkg-deb: building package 'gatb-core-testdata' in '../gatb-core-testdata_1.4.2+dfsg-13_all.deb'. dpkg-genbuildinfo --build=binary -O../gatb-core_1.4.2+dfsg-13_arm64.buildinfo dpkg-genchanges --build=binary -O../gatb-core_1.4.2+dfsg-13_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1032962 and its subdirectories I: Current time: Mon Aug 18 19:27:52 -12 2025 I: pbuilder-time-stamp: 1755588472 Tue Aug 19 07:28:09 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Tue Aug 19 07:28:09 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Tue Aug 19 07:44:56 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Tue Aug 19 07:44:57 UTC 2025 I: gatb-core_1.4.2+dfsg-13_arm64.changes: Format: 1.8 Date: Tue, 09 Jan 2024 20:48:47 +0100 Source: gatb-core Binary: gatb-core gatb-core-dbgsym gatb-core-testdata libgatbcore-dev libgatbcore3 libgatbcore3-dbgsym Architecture: arm64 all Version: 1.4.2+dfsg-13 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: gatb-core - Genome Analysis Toolbox with de-Bruijn graph gatb-core-testdata - Genome Analysis Toolbox with de-Bruijn graph (test data) libgatbcore-dev - development library of the Genome Analysis Toolbox libgatbcore3 - dynamic library of the Genome Analysis Toolbox Closes: 1058714 Changes: gatb-core (1.4.2+dfsg-13) unstable; urgency=medium . * Add build support for loongarch64 Closes: #1058714 * Cleanup symbols file manually Checksums-Sha1: 5d2b7cf2e29e215f4144598faa377ba74178a515 125183764 gatb-core-dbgsym_1.4.2+dfsg-13_arm64.deb 29733155dd9810b2aa3eaff0a5613260d0427548 1795632 gatb-core-testdata_1.4.2+dfsg-13_all.deb 9060cb7a0d0ff9bcf04ee863ff470384000c0db7 11300 gatb-core_1.4.2+dfsg-13_arm64.buildinfo b4f298cd6fbd977fcdc46cd5678c4636717f5ebd 2968544 gatb-core_1.4.2+dfsg-13_arm64.deb 178e765cb2e7cf47bcc3a40d4e23f3f694490c26 4004788 libgatbcore-dev_1.4.2+dfsg-13_arm64.deb a6aaa3e97faf29374a8c4825a9d546bc95a1c5a5 48365536 libgatbcore3-dbgsym_1.4.2+dfsg-13_arm64.deb 9c90bb65ce598e8da782acf9cdde0c15794c3803 1603704 libgatbcore3_1.4.2+dfsg-13_arm64.deb Checksums-Sha256: 2905b6aa755a009735d2909a5f09d3b5ae20caca38ddffad46f0c8d14d33b70e 125183764 gatb-core-dbgsym_1.4.2+dfsg-13_arm64.deb 3fb9afbe9e7314eaa013e57027a356d26a7d7c70d292d2bda088f8d46c3bf7a7 1795632 gatb-core-testdata_1.4.2+dfsg-13_all.deb a2ad9284ff13b98304ea89553347415957553c1123c5652d6fd8a412aaa3a1e6 11300 gatb-core_1.4.2+dfsg-13_arm64.buildinfo 22c4d3dc2e045e584ad177af69d0975bb60f00d4d61bd09794e5661233b1440e 2968544 gatb-core_1.4.2+dfsg-13_arm64.deb f339c6fc64062ce7a6d971a0e836d06424e814aac5ec2b57d8632428424beebc 4004788 libgatbcore-dev_1.4.2+dfsg-13_arm64.deb e6de31d43707e9ed0bc5d9a704c170fd7e459230744e1aa1504ab6b907553391 48365536 libgatbcore3-dbgsym_1.4.2+dfsg-13_arm64.deb 91a6e4d5e9ff2595940d95ae8c167c1a3afb217249fa9cf7eb4f5422328980c2 1603704 libgatbcore3_1.4.2+dfsg-13_arm64.deb Files: 29e51bfcc480a9882e841b8ec02776bb 125183764 debug optional gatb-core-dbgsym_1.4.2+dfsg-13_arm64.deb 36ca5aced02f1614175a7ca533071f32 1795632 science optional gatb-core-testdata_1.4.2+dfsg-13_all.deb bb627ae642f5e547303ade2dcca12fdb 11300 science optional gatb-core_1.4.2+dfsg-13_arm64.buildinfo 46ace0b55737b30e7d21be3a86d3f06d 2968544 science optional gatb-core_1.4.2+dfsg-13_arm64.deb 231b6c1b7ecaf66bc0ffe4c1929218a6 4004788 libdevel optional libgatbcore-dev_1.4.2+dfsg-13_arm64.deb f69e3ed9e4e1568393ebad6cddc4a051 48365536 debug optional libgatbcore3-dbgsym_1.4.2+dfsg-13_arm64.deb 12e3e6354837ad3627a36f06c847ca27 1603704 libs optional libgatbcore3_1.4.2+dfsg-13_arm64.deb Tue Aug 19 07:44:57 UTC 2025 I: diffoscope 303 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_11-118484.service; invocation ID: 3b8ef6db4da54e9b896082349e6ca45d # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.vT3S9gem/gatb-core_1.4.2+dfsg-13.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.vT3S9gem/gatb-core_1.4.2+dfsg-13.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.vT3S9gem/gatb-core_1.4.2+dfsg-13.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.vT3S9gem/b1/gatb-core_1.4.2+dfsg-13_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.vT3S9gem/b2/gatb-core_1.4.2+dfsg-13_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 205ms CPU time consumed: 172ms Memory peak: 18.2M (swap: 0B) Tue Aug 19 07:44:58 UTC 2025 I: diffoscope 303 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 19 07:44:58 UTC 2025 I: gatb-core from forky built successfully and reproducibly on arm64. Tue Aug 19 07:44:58 UTC 2025 I: Removing signed gatb-core_1.4.2+dfsg-13_arm64.buildinfo.asc files: removed './b1/gatb-core_1.4.2+dfsg-13_arm64.buildinfo.asc' removed './b2/gatb-core_1.4.2+dfsg-13_arm64.buildinfo.asc'