Sat Aug 23 13:02:01 UTC 2025 I: starting to build gffread/forky/arm64 on jenkins on '2025-08-23 13:01' Sat Aug 23 13:02:01 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/91970/console.log Sat Aug 23 13:02:01 UTC 2025 I: Downloading source for forky/gffread=0.12.7-8 --2025-08-23 13:02:01-- http://deb.debian.org/debian/pool/main/g/gffread/gffread_0.12.7-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2434 (2.4K) [text/prs.lines.tag] Saving to: ‘gffread_0.12.7-8.dsc’ 0K .. 100% 287M=0s 2025-08-23 13:02:01 (287 MB/s) - ‘gffread_0.12.7-8.dsc’ saved [2434/2434] Sat Aug 23 13:02:01 UTC 2025 I: gffread_0.12.7-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gffread Binary: gffread Architecture: any Version: 0.12.7-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Michael R. Crusoe , Steffen Moeller , Étienne Mollier Homepage: https://ccb.jhu.edu/software/stringtie/gff.shtml Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/gffread Vcs-Git: https://salsa.debian.org/med-team/gffread.git Testsuite: autopkgtest Testsuite-Triggers: augustus-doc, bash, bedtools-test, cnvkit, dpkg-dev, emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, optimir, proteinortho, python3-gffutils, python3-pybedtools, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, spades, trinityrnaseq-examples Build-Depends: debhelper-compat (= 13), libgclib-dev Package-List: gffread deb science optional arch=any Checksums-Sha1: 2d8d3e6e0e2fba6d9c4df6d194280f46b31072d1 403734 gffread_0.12.7.orig.tar.gz 011e282c68da0c3bdcc5df2fa2d5a46dce8de163 9176 gffread_0.12.7-8.debian.tar.xz Checksums-Sha256: 6f3417090b3beb74f435bf5d462c87475b3c704a8a0d71821f6c1321c47dbbbe 403734 gffread_0.12.7.orig.tar.gz 1b9f40f1cd7f630d6fe09529ddebf7fc4aab51424e6e94cdc6f6539dba3d92f6 9176 gffread_0.12.7-8.debian.tar.xz Files: e7b6121f75bf707b487af8850fe3d47c 403734 gffread_0.12.7.orig.tar.gz 4fe0052739c644750de61707b1932d4c 9176 gffread_0.12.7-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmaqGLAACgkQPCZ2P2xn 5uL/ZhAApLOfwAhD6PBVJRMdd6q71dQNAcjB3H9vSUs90qTG9jibOyR2eRmKWLHc MvrMwXSpcnXHNw8+EdX9WzRTMm0kiRTpGCX9vl7JjCNfyrvZmH7pBiTc6gonOTfD ZoLgRsRAJ4rA1YQ1xrF4arl5jp37BcnMPQIT7/mdEDZToQf6HGHjlAdt23wpxdeX MxEyCwJ0pNpU6K96FPD43OXGqu0VhGUTimlA1eAQc8Qo28maodbPIoW8r90Qgi1d Pues081LWoer/m/JIexGwpqyq6C9KyzeVVXfilCzVoP2bklG62X+411GyIFxVT3i lFCjmEBvXa/xCejgubgK+lVH2T6RP9RnVDv2CZsvX2uXXy/awRSbs4oYKC4kMv7p Vq1yG6gTzkHVfbbSTICjP9GRVAFxV1I+Y23O+k4vJhzgbaqiJsZPUSUpIUgJEV0U /c/v7HBiU0KvvuCs838ZqeVHthuTkIYcpQdngkkID88ecHjKhT0QcKzahKbRuJ5t oYb/1xigB06KEna3woL7+LxQR+ONIJHFiMR8yjgnZCYj9i3otLqKifgglUsmvvoc 6vQdnuHj11Rp6ZPIXkk5SNZ27GX8HKFKf0BN1VvVM5v9X1lCX7XJNue+Zy03r2qs e/+ttgWF288Xnd6EHEaIdiLALoyJL5oHH2BNX2FZ1H216UNg5rE= =BxQg -----END PGP SIGNATURE----- Sat Aug 23 13:02:01 UTC 2025 I: Checking whether the package is not for us Sat Aug 23 13:02:01 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sat Aug 23 13:02:01 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sat Aug 23 13:02:30 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Aug 23 01:02:03 -12 2025 I: pbuilder-time-stamp: 1755954123 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [gffread_0.12.7-8.dsc] I: copying [./gffread_0.12.7.orig.tar.gz] I: copying [./gffread_0.12.7-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./gffread_0.12.7-8.dsc: no acceptable signature found dpkg-source: info: extracting gffread in gffread-0.12.7 dpkg-source: info: unpacking gffread_0.12.7.orig.tar.gz dpkg-source: info: unpacking gffread_0.12.7-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gclib.patch dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3980895/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='d2f41ce57ff543f1a7e81ed54d4347c8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3980895' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GC9lkCZ2/pbuilderrc_1Djh --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GC9lkCZ2/b1 --logfile b1/build.log gffread_0.12.7-8.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.41+deb13-cloud-arm64 #1 SMP Debian 6.12.41-1 (2025-08-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3980895/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libgclib-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20003 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libgclib-dev; however: Package libgclib-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgclib-dev{a} libgclib3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 11.3 MB of archives. After unpacking 46.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-1 [93.8 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.25 [91.6 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.1 [583 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 debhelper all 13.25 [937 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libgclib3 arm64 0.12.7+ds-6 [134 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libgclib-dev arm64 0.12.7+ds-6 [270 kB] Fetched 11.3 MB in 0s (62.2 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20003 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-1_arm64.deb ... Unpacking bsdextrautils (2.41.1-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.25_all.deb ... Unpacking libdebhelper-perl (13.25) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../24-libxml2-16_2.14.5+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.25_all.deb ... Unpacking debhelper (13.25) ... Selecting previously unselected package libgclib3:arm64. Preparing to unpack .../29-libgclib3_0.12.7+ds-6_arm64.deb ... Unpacking libgclib3:arm64 (0.12.7+ds-6) ... Selecting previously unselected package libgclib-dev:arm64. Preparing to unpack .../30-libgclib-dev_0.12.7+ds-6_arm64.deb ... Unpacking libgclib-dev:arm64 (0.12.7+ds-6) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.1) ... Setting up libdebhelper-perl (13.25) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libgclib3:arm64 (0.12.7+ds-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-4) ... Setting up libgclib-dev:arm64 (0.12.7+ds-6) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.25) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/gffread-0.12.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gffread_0.12.7-8_source.changes dpkg-buildpackage: info: source package gffread dpkg-buildpackage: info: source version 0.12.7-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/gffread-0.12.7' make[1]: Leaving directory '/build/reproducible-path/gffread-0.12.7' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/gffread-0.12.7' dh_auto_build -- 'LINKER=$(CXX)' make -j12 "INSTALL=install --strip-program=true" LINKER=\$\(CXX\) make[2]: Entering directory '/build/reproducible-path/gffread-0.12.7' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -std=c++11 -I. -I/usr/include/gclib -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_REENTRANT -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O2 -ffile-prefix-map=/build/reproducible-path/gffread-0.12.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c gffread.cpp -o gffread.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -std=c++11 -I. -I/usr/include/gclib -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_REENTRANT -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O2 -ffile-prefix-map=/build/reproducible-path/gffread-0.12.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c gff_utils.cpp -o gff_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -o gffread gffread.o gff_utils.o -lgclib -pthread make[2]: Leaving directory '/build/reproducible-path/gffread-0.12.7' make[1]: Leaving directory '/build/reproducible-path/gffread-0.12.7' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/gffread/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'gffread' in '../gffread_0.12.7-8_arm64.deb'. dpkg-deb: building package 'gffread-dbgsym' in '../gffread-dbgsym_0.12.7-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../gffread_0.12.7-8_arm64.buildinfo dpkg-genchanges --build=binary -O../gffread_0.12.7-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3980895 and its subdirectories I: Current time: Sat Aug 23 01:02:29 -12 2025 I: pbuilder-time-stamp: 1755954149 Sat Aug 23 13:02:31 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sat Aug 23 13:02:31 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sat Aug 23 13:03:28 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sat Aug 23 13:03:29 UTC 2025 I: gffread_0.12.7-8_arm64.changes: Format: 1.8 Date: Wed, 31 Jul 2024 12:54:36 +0200 Source: gffread Binary: gffread gffread-dbgsym Architecture: arm64 Version: 0.12.7-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: gffread - GFF/GTF format conversions, region filtering, FASTA sequence extr Changes: gffread (0.12.7-8) unstable; urgency=medium . [ Charles Plessy ] * Remove Breaks/Replace on cufflinks (<< 2.2.1+dfsg.1-4), as oldstable already has 2.2.1+dfsg.1-8+b1 . [ Michael R. Crusoe ] * d/tests/{control,run-tests}: instead, we explictly skip cnvkit on s390x Checksums-Sha1: 601e8a4f8b44e0cd436b176e12b6a25c4f37cdf9 202932 gffread-dbgsym_0.12.7-8_arm64.deb 5ea02b1a7fe118d52668f6b01dcbc1d7ac7f18ea 4925 gffread_0.12.7-8_arm64.buildinfo b94866e946315d43250d0b1502a5b54f0ba47e93 57200 gffread_0.12.7-8_arm64.deb Checksums-Sha256: a6481bf386cf560dbdf73b0f6a0cca7bc7a04e6a7ebccbe8d41ae9b11d259641 202932 gffread-dbgsym_0.12.7-8_arm64.deb b8477fee5f52299c01397322ae691b25e3ab5775b0695e2f9746caa823152722 4925 gffread_0.12.7-8_arm64.buildinfo 0b4bd04cbdb7bb81d748c46619a42c3c0efcd3287faf4333900fe698d1b3b617 57200 gffread_0.12.7-8_arm64.deb Files: 2b1e1fefac8a290d25f94545bb41cdd2 202932 debug optional gffread-dbgsym_0.12.7-8_arm64.deb 317e1abad7f35fa821ad18d5f237ee98 4925 science optional gffread_0.12.7-8_arm64.buildinfo 8ba57d794dedc13b3cdd67b9fc648604 57200 science optional gffread_0.12.7-8_arm64.deb Sat Aug 23 13:03:29 UTC 2025 I: diffoscope 305 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_7-91970.service; invocation ID: 90e1e4cce57342e088b10d30ed3a40e6 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.GC9lkCZ2/gffread_0.12.7-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.GC9lkCZ2/gffread_0.12.7-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.GC9lkCZ2/gffread_0.12.7-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.GC9lkCZ2/b1/gffread_0.12.7-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.GC9lkCZ2/b2/gffread_0.12.7-8_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 225ms CPU time consumed: 178ms Memory peak: 17.6M (swap: 0B) Sat Aug 23 13:03:30 UTC 2025 I: diffoscope 305 found no differences in the changes files, and a .buildinfo file also exists. Sat Aug 23 13:03:30 UTC 2025 I: gffread from forky built successfully and reproducibly on arm64. Sat Aug 23 13:03:30 UTC 2025 I: Removing signed gffread_0.12.7-8_arm64.buildinfo.asc files: removed './b1/gffread_0.12.7-8_arm64.buildinfo.asc' removed './b2/gffread_0.12.7-8_arm64.buildinfo.asc'