Sat Sep 27 21:50:14 UTC 2025 I: starting to build king-probe/forky/arm64 on jenkins on '2025-09-27 21:50' Sat Sep 27 21:50:14 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/101743/console.log Sat Sep 27 21:50:14 UTC 2025 I: Downloading source for forky/king-probe=02.21-1 --2025-09-27 21:50:14-- http://deb.debian.org/debian/pool/main/k/king-probe/king-probe_02.21-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2129 (2.1K) [text/prs.lines.tag] Saving to: ‘king-probe_02.21-1.dsc’ 0K .. 100% 229M=0s 2025-09-27 21:50:14 (229 MB/s) - ‘king-probe_02.21-1.dsc’ saved [2129/2129] Sat Sep 27 21:50:14 UTC 2025 I: king-probe_02.21-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: king-probe Binary: king-probe Architecture: any Version: 02.21-1 Maintainer: Debian Med Packaging Team Uploaders: Malihe Asemani , Andreas Tille , Michael Prisant , Pranav Ballaney Homepage: http://kinemage.biochem.duke.edu/software/probe.php Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/king-probe Vcs-Git: https://salsa.debian.org/med-team/king-probe.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: king-probe deb science optional arch=any Checksums-Sha1: 381b032c62144576cb1430b54883793a4325e55e 132885 king-probe_02.21.orig.tar.gz a9076d64ecd5bbef45ce16556f9aa660a93c15ba 41704 king-probe_02.21-1.debian.tar.xz Checksums-Sha256: f9d5f2ce7e9c8650321cef24716618b0537077919701aab5c14f75076b294e22 132885 king-probe_02.21.orig.tar.gz e2e37f5fa2945487f190b7705e6adea354dd18c99d51970a5e7e612156eaf388 41704 king-probe_02.21-1.debian.tar.xz Files: 8d4a82afea1a46b27085c58ababcdf5f 132885 king-probe_02.21.orig.tar.gz 48c195a517eb8fc612a0389215531df7 41704 king-probe_02.21-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmH0E7gRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEsUA//akJVSKToss0T4iOOYp0oVLvARO+1Iqok 7yxwPh41H4hMyGrbwRRE6iSTytj7HB3pD08PCoJNyo8JKkOmPUoJjV77pXOgZ0iE fPABZcLKvfKYWMi49jd5P1mbfD2nAh/kYaep60FMtYIWvlRW6ovGwiJoKestlq9m OjyCU40sP4Yarl7CVII7UjdYa+uVyG5UybvW42MtJkk0WFQE5KhGVzuyXiCM0ol+ vLb1F9mI8WXb82sXTPUH98Z8eOROVcbLrJwvVOiueDySCMmwFjpBjcAxXdj3knOC Yjv/EFSAoxXmZirHALYQVRtjnh1z4NmHWCirZafyrnaugrRHUKtAsI1AHllAxL1p Dtgg1u4m/Stj70TRIb0WPOyjWVlJjcredjoThSZ2ZlyGtGN+wk0I4Bi9fPrLPXrg ohoot9mvm2dAzThPP71xqTkh5QKGK/2uuixv0oHoVggCFpyc9EPjXZyJhOHENI3K Cyj6pMzPBJ9Qk5KwvsutnZHQWuDUrRIHc4FMP3KW3JJ6Tv7novm45J+W3KvPVMhP B1YX7231xLvT09ysVdXaRgbOCo6eQXSLVs+WnfHLXfp/4k8cT+SHSrbAb6vwoWPp Y6eZPMK6fkQYsgYiqqlD2KwA0f4y8vIcOPjUw+USEKaiTVwJcJhYdcSVgzHBGtD9 oEPMnJtJO8U= =PJJG -----END PGP SIGNATURE----- Sat Sep 27 21:50:14 UTC 2025 I: Checking whether the package is not for us Sat Sep 27 21:50:14 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sat Sep 27 21:50:14 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sat Sep 27 21:50:45 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Sep 27 09:50:16 -12 2025 I: pbuilder-time-stamp: 1759009816 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [king-probe_02.21-1.dsc] I: copying [./king-probe_02.21.orig.tar.gz] I: copying [./king-probe_02.21-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./king-probe_02.21-1.dsc: no acceptable signature found dpkg-source: info: extracting king-probe in king-probe-02.21 dpkg-source: info: unpacking king-probe_02.21.orig.tar.gz dpkg-source: info: unpacking king-probe_02.21-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_build_issue.patch dpkg-source: info: applying compiler_flags.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2127599/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='d1d57644511b4a9abef0be51045e54ca' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2127599' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VFWZqtdH/pbuilderrc_Qt4I --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VFWZqtdH/b1 --logfile b1/build.log king-probe_02.21-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2127599/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.0 MB of archives. After unpacking 44.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.27 [92.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 debhelper all 13.27 [940 kB] Fetched 11.0 MB in 0s (83.9 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-3_arm64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.27_all.deb ... Unpacking libdebhelper-perl (13.27) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../24-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.27_all.deb ... Unpacking debhelper (13.27) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.27) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.27) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/king-probe-02.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../king-probe_02.21-1_source.changes dpkg-buildpackage: info: source package king-probe dpkg-buildpackage: info: source version 02.21-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/king-probe-02.21' dh_auto_clean make -j12 clean make[2]: Entering directory '/build/reproducible-path/king-probe-02.21' make[2]: Leaving directory '/build/reproducible-path/king-probe-02.21' rm -f probe make[1]: Leaving directory '/build/reproducible-path/king-probe-02.21' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/king-probe-02.21' dh_auto_build --buildsystem=makefile -- -f Makefile.linux probe make -j12 INSTALL="install --strip-program=true" -f Makefile.linux probe make[2]: Entering directory '/build/reproducible-path/king-probe-02.21' cc -c probe.c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/king-probe-02.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard cc -c dots.c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/king-probe-02.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard cc -c abin.c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/king-probe-02.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard cc -c readPDBrecs.c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/king-probe-02.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard cc -c geom3d.c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/king-probe-02.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard cc -c utility.c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/king-probe-02.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard cc -c select.c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/king-probe-02.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard cc -c parse.c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/king-probe-02.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard cc -c atomprops.c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/king-probe-02.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard cc -c stdconntable.c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/king-probe-02.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard cc -c autobondrot.c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/king-probe-02.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard cc -c hybrid_36_c.c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/king-probe-02.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard probe.c: In function 'countsummary': probe.c:6650:21: warning: '%s' directive writing up to 255 bytes into a region of size 200 [-Wformat-overflow=] 6650 | sprintf(message,"%s",inputfilename); | ^~ ~~~~~~~~~~~~~ probe.c:6650:4: note: 'sprintf' output between 1 and 256 bytes into a destination of size 200 6650 | sprintf(message,"%s",inputfilename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -o probe probe.o dots.o abin.o readPDBrecs.o geom3d.o utility.o select.o parse.o atomprops.o stdconntable.o autobondrot.o hybrid_36_c.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/king-probe-02.21' make[1]: Leaving directory '/build/reproducible-path/king-probe-02.21' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'king-probe' in '../king-probe_02.21-1_arm64.deb'. dpkg-deb: building package 'king-probe-dbgsym' in '../king-probe-dbgsym_02.21-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../king-probe_02.21-1_arm64.buildinfo dpkg-genchanges --build=binary -O../king-probe_02.21-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2127599 and its subdirectories I: Current time: Sat Sep 27 09:50:44 -12 2025 I: pbuilder-time-stamp: 1759009844 Sat Sep 27 21:50:45 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sat Sep 27 21:50:45 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sat Sep 27 21:51:36 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sat Sep 27 21:51:36 UTC 2025 I: king-probe_02.21-1_arm64.changes: Format: 1.8 Date: Fri, 28 Jan 2022 16:54:59 +0100 Source: king-probe Binary: king-probe king-probe-dbgsym Architecture: arm64 Version: 02.21-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: king-probe - Evaluate and visualize protein interatomic packing Changes: king-probe (02.21-1) unstable; urgency=medium . * Cleanup watch file * New upstream version Checksums-Sha1: cc5d675d06f2b2952cc51256f080e24d007ae35d 143400 king-probe-dbgsym_02.21-1_arm64.deb f3f2c7295ac885aefa495d4ce9b9f27c78f837bf 4850 king-probe_02.21-1_arm64.buildinfo e09a4e43e504f2a09472320ab037825276837141 135676 king-probe_02.21-1_arm64.deb Checksums-Sha256: 8f2221387125603242dc3f322b01e1b8d37665d08236dd6e676aa717798807be 143400 king-probe-dbgsym_02.21-1_arm64.deb 37ae1456bb6e97eb4a2e7f432256d1ace007659180d4ed4c283b91e133027054 4850 king-probe_02.21-1_arm64.buildinfo 88216efe8f3841c0a94960f4216f1c910e134082b141c252ab584af48be13a1a 135676 king-probe_02.21-1_arm64.deb Files: cf38b60b02309945fd9e59fff5e9154b 143400 debug optional king-probe-dbgsym_02.21-1_arm64.deb 61e6b7ac84f68c0c07d38dce167bf7f2 4850 science optional king-probe_02.21-1_arm64.buildinfo 8e3353eeb5e1f0e2515970936be9e57f 135676 science optional king-probe_02.21-1_arm64.deb Sat Sep 27 21:51:37 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_9-101743.service; invocation ID: af90856c940f43dda9b37fa0864e9548 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.VFWZqtdH/king-probe_02.21-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.VFWZqtdH/king-probe_02.21-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.VFWZqtdH/king-probe_02.21-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.VFWZqtdH/b1/king-probe_02.21-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.VFWZqtdH/b2/king-probe_02.21-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.002s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 190ms CPU time consumed: 162ms Memory peak: 17.7M (swap: 0B) Sat Sep 27 21:51:37 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sat Sep 27 21:51:37 UTC 2025 I: king-probe from forky built successfully and reproducibly on arm64. Sat Sep 27 21:51:38 UTC 2025 I: Removing signed king-probe_02.21-1_arm64.buildinfo.asc files: removed './b1/king-probe_02.21-1_arm64.buildinfo.asc' removed './b2/king-probe_02.21-1_arm64.buildinfo.asc'