Sat Oct 11 15:36:42 UTC 2025 I: starting to build libbpp-raa/forky/arm64 on jenkins on '2025-10-11 15:36' Sat Oct 11 15:36:42 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/102750/console.log Sat Oct 11 15:36:42 UTC 2025 I: Downloading source for forky/libbpp-raa=2.4.1-10 --2025-10-11 15:36:42-- http://deb.debian.org/debian/pool/main/libb/libbpp-raa/libbpp-raa_2.4.1-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2296 (2.2K) [text/prs.lines.tag] Saving to: ‘libbpp-raa_2.4.1-10.dsc’ 0K .. 100% 135M=0s 2025-10-11 15:36:42 (135 MB/s) - ‘libbpp-raa_2.4.1-10.dsc’ saved [2296/2296] Sat Oct 11 15:36:42 UTC 2025 I: libbpp-raa_2.4.1-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbpp-raa Binary: libbpp-raa-dev, libbpp-raa4t64 Architecture: any Version: 2.4.1-10 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-raa Vcs-Git: https://salsa.debian.org/med-team/libbpp-raa.git Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), zlib1g-dev, libbpp-seq-dev Package-List: libbpp-raa-dev deb libdevel optional arch=any libbpp-raa4t64 deb libs optional arch=any Checksums-Sha1: 31eefa01d441b72db441e1f5e1fb0e07acc24717 83211 libbpp-raa_2.4.1.orig.tar.gz 5a7fce30e55781b4a695e7f348178c1f65bd5d61 11020 libbpp-raa_2.4.1-10.debian.tar.xz Checksums-Sha256: 21ed87b5c0c80f5b1632493127b30a77ae92ac0853985c048f31bed5fd0fb301 83211 libbpp-raa_2.4.1.orig.tar.gz 12fa8b916a9fe3bab26695f57095193a4d2302e9ec69cab1a6ed82b1573b7a05 11020 libbpp-raa_2.4.1-10.debian.tar.xz Files: 6ccf1fcd43852bb6d20959b0308fb754 83211 libbpp-raa_2.4.1.orig.tar.gz 4123e934a16bfcc33c0f863686b0728e 11020 libbpp-raa_2.4.1-10.debian.tar.xz Dgit: 842be943f184c82b2fe9c066412c5c8ab01c60dd debian archive/debian/2.4.1-10 https://git.dgit.debian.org/libbpp-raa -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmja8LUUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoksg//ZGPR8dDhiLHDJwDaYCC4h0Tybi7N FUA5Ki6e/ctCiQEVYsaYThLTM1ndnx2caCBb85C/ZM3+JhetGlaRvWuANskBeTSu i6cEHe0kakbPG2C5RGvXk5Kqg6ifrDfQk/xhwn5JWJSL+LgU5pNr9zvlD2T+hqjE 5xmSao0/wFr2LuWVt7ErQz5QZdAukZlxm+zSJPT+YRXbwLxtWga6PHudrXbWwkQL pgvqwuRjd0FpWR8FIWXFkGd2bhmJlvE0enasi7zgyzbhbC53upggtRzA6UPFquIp 3iWN1ijp+6C/Ilz4I7tHyo60R7ypkliweJU6Jpi9VvUNZm2xQ8PBnQszFV2grQtv 9Gfw8kQFk3ZKXE+ggMIn0p5r32qWDHpNeGA6mljIU++riiS0ZE/oV9l5lNHodR1d PDBkMJCEGgXnsI/uyDLj1k5ACxywufTQmDmuQY5e4CEd1ajsCd07rVYbLo3Nw5J6 3pnnNkHp3ieGfLuE7sG+MFrebgCockxP8PAY8P0jQYIsPqGQ/QGkUTjg8p8v6H4J YydR7rQc8ViZjba3E55Na/ozNN+Ik659hcASy39U2SfYr/Klzzz98yABQy4WHnG5 h7fVSG7iVS4wMeSvhLtBCN+Yk3klDxjLtV6q1jCrxDc9oQMGWQ+2D6gSTGX66L2C TllTyL7RGc9GlyU= =z7C4 -----END PGP SIGNATURE----- Sat Oct 11 15:36:42 UTC 2025 I: Checking whether the package is not for us Sat Oct 11 15:36:42 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sat Oct 11 15:36:42 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sat Oct 11 15:37:18 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 11 03:36:43 -12 2025 I: pbuilder-time-stamp: 1760197003 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbpp-raa_2.4.1-10.dsc] I: copying [./libbpp-raa_2.4.1.orig.tar.gz] I: copying [./libbpp-raa_2.4.1-10.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbpp-raa_2.4.1-10.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-raa in libbpp-raa-2.4.1 dpkg-source: info: unpacking libbpp-raa_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-raa_2.4.1-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying cmake-4.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/640132/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='fa9cb8284aa44dafad3bd3146e3e1693' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='640132' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CW5AXwOX/pbuilderrc_Z2s6 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CW5AXwOX/b1 --logfile b1/build.log libbpp-raa_2.4.1-10.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/640132/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), zlib1g-dev, libbpp-seq-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106~); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbpp-seq-dev; however: Package libbpp-seq-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 32.7 MB of archives. After unpacking 135 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-1 [94.3 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 29 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.16.0-4 [368 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get: 50 http://deb.debian.org/debian forky/main arm64 d-shlibs all 0.109 [11.1 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 57 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libbpp-core4t64 arm64 2.4.1-14 [534 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libbpp-core-dev arm64 2.4.1-14 [922 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libbpp-seq12t64 arm64 2.4.1-14 [435 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libbpp-seq-dev arm64 2.4.1-14 [701 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 32.7 MB in 1s (61.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_arm64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-1_arm64.deb ... Unpacking bsdextrautils (2.41.2-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. 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Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libbpp-seq-dev:arm64 (2.4.1-14) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libgnutls30t64:arm64 (3.8.10-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libcurl4t64:arm64 (8.16.0-4) ... Setting up debhelper (13.28) ... Setting up cmake (4.1.1+really3.31.6-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/libbpp-raa-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-raa_2.4.1-10_source.changes dpkg-buildpackage: info: source package libbpp-raa dpkg-buildpackage: info: source version 2.4.1-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-raa-2.4.1 -B/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bpp-raa-static.dir/build.make src/CMakeFiles/bpp-raa-static.dir/depend make -f src/CMakeFiles/bpp-raa-shared.dir/build.make src/CMakeFiles/bpp-raa-shared.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-raa-2.4.1 /build/reproducible-path/libbpp-raa-2.4.1/src /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-raa-static.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-raa-2.4.1 /build/reproducible-path/libbpp-raa-2.4.1/src /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-raa-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bpp-raa-static.dir/build.make src/CMakeFiles/bpp-raa-static.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bpp-raa-shared.dir/build.make src/CMakeFiles/bpp-raa-shared.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' [ 5%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c [ 16%] Building CXX object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o [ 16%] Building CXX object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o [ 22%] Building CXX object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o [ 27%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o [ 33%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaList.cpp cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA.cpp [ 38%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaSpeciesTree.cpp cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA_acnuc.c cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/misc_acnuc.c [ 44%] Building C object src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o [ 50%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA_acnuc.c [ 55%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/parser.c cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -MD -MT src/CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o -MF CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o.d -o CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/zsockr.c cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaList.cpp [ 61%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o [ 66%] Building CXX object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RAA.cpp cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/RaaSpeciesTree.cpp /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:34: warning: argument 1 of type 'uint32[4]' {aka 'unsigned int[4]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:35: note: previously declared as 'uint32 *' {aka 'unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~^~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:55: warning: argument 2 of type 'const uint32[16]' {aka 'const unsigned int[16]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:54: note: previously declared as 'const uint32 *' {aka 'const unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~~~~~~~^~ [ 72%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c [ 77%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/misc_acnuc.c [ 83%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/parser.c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:34: warning: argument 1 of type 'uint32[4]' {aka 'unsigned int[4]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:35: note: previously declared as 'uint32 *' {aka 'unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~^~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:214:55: warning: argument 2 of type 'const uint32[16]' {aka 'const unsigned int[16]'} with mismatched bound [-Warray-parameter=] 214 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/md5.c:48:54: note: previously declared as 'const uint32 *' {aka 'const unsigned int *'} 48 | static void MD5_Transform(uint32* buf, uint32 const* in); | ~~~~~~~~~~~~~~^~ [ 88%] Building C object src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cc -Dbpp_raa_shared_EXPORTS -I/build/reproducible-path/libbpp-raa-2.4.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -MD -MT src/CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o -MF CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o.d -o CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o -c /build/reproducible-path/libbpp-raa-2.4.1/src/Bpp/Raa/zsockr.c [ 94%] Linking CXX shared library libbpp-raa.so cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-raa-shared.dir/link.txt --verbose=1 [100%] Linking CXX static library libbpp-raa.a cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-raa-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-raa-static.dir/link.txt --verbose=1 /usr/lib/aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/ar qc libbpp-raa.a "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaList.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RaaSpeciesTree.cpp.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/RAA_acnuc.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/md5.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/misc_acnuc.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/parser.c.o" "CMakeFiles/bpp-raa-static.dir/Bpp/Raa/zsockr.c.o" /usr/bin/ranlib libbpp-raa.a make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-raa-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,--dependency-file=CMakeFiles/bpp-raa-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-raa.so.4 -o libbpp-raa.so.4.0.0 "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaList.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RaaSpeciesTree.cpp.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/RAA_acnuc.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/md5.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/misc_acnuc.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/parser.c.o" "CMakeFiles/bpp-raa-shared.dir/Bpp/Raa/zsockr.c.o" /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 [100%] Built target bpp-raa-static cd /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-raa.so.4.0.0 libbpp-raa.so.4 libbpp-raa.so make[3]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' [100%] Built target bpp-raa-shared make[2]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/libbpp-raa-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-raa-2.4.1 -B/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-raa/bpp-raa-config.cmake -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-raa/bpp-raa-config-version.cmake -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.a -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.so.4.0.0 -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.so.4 -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.so -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/parser.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaSpeciesTree.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaSeqAttributes.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RaaList.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RAA_acnuc.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/include/Bpp/Raa/RAA.h -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-raa/bpp-raa-targets.cmake -- Installing: /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/bpp-raa/bpp-raa-targets-none.cmake make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libbpp-raa-2.4.1' dh_install d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/aarch64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbpp-raa-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libbpp-raa4t64/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.a debian/libbpp-raa-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.so debian/libbpp-raa-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.so.4 debian/libbpp-raa4t64/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/libbpp-raa-2.4.1/debian/tmp/usr/lib/aarch64-linux-gnu/libbpp-raa.so.4.0.0 debian/libbpp-raa4t64/usr/lib/aarch64-linux-gnu PKGDEV=libbpp-raa-dev PKGSHL=libbpp-raa4t64 install -d -m 755 debian/libbpp-raa-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-raa-dev/usr/include install -d -m 755 debian/libbpp-raa-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/cmake debian/libbpp-raa-dev/usr/lib/aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libbpp-raa-2.4.1' dh_installdocs dh_installchangelogs dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbpp-raa4t64-dbgsym' in '../libbpp-raa4t64-dbgsym_2.4.1-10_arm64.deb'. dpkg-deb: building package 'libbpp-raa-dev' in '../libbpp-raa-dev_2.4.1-10_arm64.deb'. dpkg-deb: building package 'libbpp-raa4t64' in '../libbpp-raa4t64_2.4.1-10_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libbpp-raa_2.4.1-10_arm64.buildinfo dpkg-genchanges --build=binary -O../libbpp-raa_2.4.1-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/640132 and its subdirectories I: Current time: Sat Oct 11 03:37:17 -12 2025 I: pbuilder-time-stamp: 1760197037 Sat Oct 11 15:37:18 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sat Oct 11 15:37:18 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sat Oct 11 15:37:56 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sat Oct 11 15:37:57 UTC 2025 I: libbpp-raa_2.4.1-10_arm64.changes: Format: 1.8 Date: Mon, 29 Sep 2025 22:45:44 +0200 Source: libbpp-raa Binary: libbpp-raa-dev libbpp-raa4t64 libbpp-raa4t64-dbgsym Architecture: arm64 Version: 2.4.1-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libbpp-raa-dev - Bio++ Remote Acnuc Access library development files libbpp-raa4t64 - Bio++ Remote Acnuc Access library Closes: 1113120 Changes: libbpp-raa (2.4.1-10) unstable; urgency=medium . * Team upload. * cmake-4.patch: new: bump cmake requirement to 3.10. (Closes: #1113120) * d/control: declare compliance to standards version 4.7.2. * d/control: remove redundant Rules-Requires-Root: no. * d/copyright: remove the old FSF address. * d/watch: bump to v5 Github template. * d/*lintian-overrides: remove unsed soname override. * d/s/lintian-overrides: glob d/control line number. This stabilises the override when d/control length varies. Checksums-Sha1: cb07eaa840e943fafc5c5ccaae13ab0935c2287d 66428 libbpp-raa-dev_2.4.1-10_arm64.deb e16019cf1ddd03e5b04274fd4650410772977173 234484 libbpp-raa4t64-dbgsym_2.4.1-10_arm64.deb a0e3e6f16ca3af9559b0d87968b8342cba3eba2e 49696 libbpp-raa4t64_2.4.1-10_arm64.deb e98c67d0bf0deafb9a40bf84f78d5bf585fd45f9 6679 libbpp-raa_2.4.1-10_arm64.buildinfo Checksums-Sha256: 7d6092a395dec24505bddb6c5231c3f343a0144d95e6ad5c1c1376da0bc6258b 66428 libbpp-raa-dev_2.4.1-10_arm64.deb 9fbbb9a2a22638baa49f95d03b33983b97ab587427061090505c9351ef49d548 234484 libbpp-raa4t64-dbgsym_2.4.1-10_arm64.deb d734eeec72131208f8469d0a29679ccd4b58692a4d58042314e6726c2a1699eb 49696 libbpp-raa4t64_2.4.1-10_arm64.deb 9ad188999ff98ed2c81ee72354b33360eaf9a615f10e5804672095572831a744 6679 libbpp-raa_2.4.1-10_arm64.buildinfo Files: 7a946f52d119e80f77a3620f1930fcaf 66428 libdevel optional libbpp-raa-dev_2.4.1-10_arm64.deb fbbf13ac8db878b959597b4eb658c7aa 234484 debug optional libbpp-raa4t64-dbgsym_2.4.1-10_arm64.deb b839d11b9aac85605e25c4078257c99d 49696 libs optional libbpp-raa4t64_2.4.1-10_arm64.deb 7c1980e30ee870c1546977c42ea6b397 6679 science optional libbpp-raa_2.4.1-10_arm64.buildinfo Sat Oct 11 15:37:57 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_9-102750.service; invocation ID: c1605079ac054a7598ed1448b2ec7038 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.CW5AXwOX/libbpp-raa_2.4.1-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.CW5AXwOX/libbpp-raa_2.4.1-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.CW5AXwOX/libbpp-raa_2.4.1-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.CW5AXwOX/b1/libbpp-raa_2.4.1-10_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.CW5AXwOX/b2/libbpp-raa_2.4.1-10_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 224ms CPU time consumed: 195ms Memory peak: 17.6M (swap: 0B) Sat Oct 11 15:37:58 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sat Oct 11 15:37:58 UTC 2025 I: libbpp-raa from forky built successfully and reproducibly on arm64. Sat Oct 11 15:37:59 UTC 2025 I: Removing signed libbpp-raa_2.4.1-10_arm64.buildinfo.asc files: removed './b1/libbpp-raa_2.4.1-10_arm64.buildinfo.asc' removed './b2/libbpp-raa_2.4.1-10_arm64.buildinfo.asc'