Sat Sep 13 20:47:20 UTC 2025 I: starting to build libedlib/forky/arm64 on jenkins on '2025-09-13 20:47' Sat Sep 13 20:47:20 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/96985/console.log Sat Sep 13 20:47:20 UTC 2025 I: Downloading source for forky/libedlib=1.2.7-6 --2025-09-13 20:47:20-- http://deb.debian.org/debian/pool/main/libe/libedlib/libedlib_1.2.7-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2389 (2.3K) [text/prs.lines.tag] Saving to: ‘libedlib_1.2.7-6.dsc’ 0K .. 100% 108M=0s 2025-09-13 20:47:20 (108 MB/s) - ‘libedlib_1.2.7-6.dsc’ saved [2389/2389] Sat Sep 13 20:47:20 UTC 2025 I: libedlib_1.2.7-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libedlib Binary: libedlib1, libedlib-dev, edlib-aligner, python3-edlib Architecture: any Version: 1.2.7-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/Martinsos/edlib Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libedlib Vcs-Git: https://salsa.debian.org/med-team/libedlib.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, dh-sequence-python3, d-shlibs, rename, cython3, python3-all-dev, python3-setuptools Package-List: edlib-aligner deb science optional arch=any libedlib-dev deb libdevel optional arch=any libedlib1 deb libs optional arch=any python3-edlib deb python optional arch=any Checksums-Sha1: 9e3702547e7c789015df742f84b987bec43811c5 4318998 libedlib_1.2.7.orig.tar.gz 759885673bcd2b65df1e146d38ca291c0a39a68b 7604 libedlib_1.2.7-6.debian.tar.xz Checksums-Sha256: 8767bc1b04a1a67282d57662e5702c4908996e96b1753b5520921ff189974621 4318998 libedlib_1.2.7.orig.tar.gz 9658aa68789c15bfc99ca921e054f0ca22a19fe54e3f898a2081e5428a0d6c96 7604 libedlib_1.2.7-6.debian.tar.xz Files: 77917d44bfd08216f2dd4480578688c2 4318998 libedlib_1.2.7.orig.tar.gz 7671249397981f88d56c9b603579f19b 7604 libedlib_1.2.7-6.debian.tar.xz Dgit: d93b8a9602cbc0d28f1532a96d2f358266020c8f debian archive/debian/1.2.7-6 https://git.dgit.debian.org/libedlib -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmaSzNEUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqlORAAnAlDygDmsRWHr3+aK0STtazDcGkF ctHwajdxm75GHbjLFGUrpA6tjPygYUILJKkGieb19JqPKdmirYVVOyg5Ltu+WJ1h ZQWzVxESOjFSzGqP3eIziZXDnSVm+UbREzfQmjDJmTfjZMWgRUrDjhT4Q1AoWVL0 H/RuuR7JhKAvbeI5TfePhbL3WSIW1W4tHQTwat+pD610u6YrMcIVTSHs6nXBtg7e o25m5w1jv8bbhUyzhjGbie1ylE3W95cm/w+hfe8jDFTr9ddltV1gU4u3FcZNV7AG TLidtDtoVDwYtkcjMVWKrP97Gf6eyLWwzFYhVn2ts/Kv+lTyVP9IDOAwJPnewcni BBEBIyMBStYwsYmTmitTGSmX6rWckFbhfmYBwJ8xPotKptaC0o0nafpdeJeRUIFx cmrYF2egeNtjiZfvxeOwZ7H9g4UG0/dUWlGOAP4gehSunWFldcUrGLYCY8CRfIwT IsCgQBGm7nLeyAwFBI4i7YzCznXz+U9jFcwFtQ2rXdELZH3hOoAMBIsas0Uj6++O jQ4z1HBukfN97Bw5tIbKKXy6ifmcO8Fj64hwTWQsT73CfwayuYks+XvQMDBiBpgE rlt1+Te/sPPqrD8+2BmAnU0as4c/fVZobGtQhOwbopZ4bTnIB5B8jYPpZUMiYsAu eRUYoHjPHgrQ2lM= =n0hE -----END PGP SIGNATURE----- Sat Sep 13 20:47:20 UTC 2025 I: Checking whether the package is not for us Sat Sep 13 20:47:20 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sat Sep 13 20:47:20 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sat Sep 13 20:48:16 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Sep 13 08:47:22 -12 2025 I: pbuilder-time-stamp: 1757796442 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libedlib_1.2.7-6.dsc] I: copying [./libedlib_1.2.7.orig.tar.gz] I: copying [./libedlib_1.2.7-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libedlib_1.2.7-6.dsc: no acceptable signature found dpkg-source: info: extracting libedlib in libedlib-1.2.7 dpkg-source: info: unpacking libedlib_1.2.7.orig.tar.gz dpkg-source: info: unpacking libedlib_1.2.7-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cython3.patch dpkg-source: info: applying enable_shared_and_static.patch dpkg-source: info: applying really_exclude_readme.rst.patch dpkg-source: info: applying fix-package-version.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3024026/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='70f82d9016444f26bef33945677c9c6e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3024026' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.biIEOZAe/pbuilderrc_gU0t --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.biIEOZAe/b1 --logfile b1/build.log libedlib_1.2.7-6.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3024026/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, dh-sequence-python3, d-shlibs, rename, cython3, python3-all-dev, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjs-sphinxdoc{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} rename{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 47.1 MB of archives. After unpacking 192 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-2 [93.9 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 cmake-data all 4.1.1+really3.31.6-1 [2268 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 40 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.9-3 [1375 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.15.0-1 [360 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 cmake arm64 4.1.1+really3.31.6-1 [9905 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 d-shlibs all 0.109 [11.1 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 68 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.1-2 [145 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.7-1 [1978 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.7-1 [4924 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.5-1 [10.4 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.5-1 [1068 B] Get: 82 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.5-1 [1044 B] Get: 83 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.7-1 [504 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.5-1 [26.1 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.5-1 [1068 B] Get: 86 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 97 http://deb.debian.org/debian forky/main arm64 rename all 2.02-1 [21.8 kB] Fetched 47.1 MB in 0s (214 MB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... 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Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libuv1t64:arm64 (1.51.0-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Sep 13 20:47:44 UTC 2025. Universal Time is now: Sat Sep 13 20:47:44 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:arm64 (2.7.1-2) ... Setting up libjsoncpp26:arm64 (1.9.6-4) ... Setting up libproc2-0:arm64 (2:4.0.4-9) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up d-shlibs (0.109) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libjs-sphinxdoc (8.2.3-6) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.8.0-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up cmake-data (4.1.1+really3.31.6-1) ... Setting up librhash1:arm64 (1.4.6-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libarchive13t64:arm64 (3.7.4-4+b1) ... Setting up readline-common (8.3-3) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... 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Setting up libcurl4t64:arm64 (8.15.0-1) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:arm64 (3.13.5-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.5-1) ... Setting up cmake (4.1.1+really3.31.6-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.5-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libedlib-1.2.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libedlib_1.2.7-6_source.changes dpkg-buildpackage: info: source package libedlib dpkg-buildpackage: info: source version 1.2.7-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/libedlib-1.2.7' rm -rf meson-build make[1]: Leaving directory '/build/reproducible-path/libedlib-1.2.7' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libedlib-1.2.7' dh_auto_configure --buildsystem=cmake -- -DCMAKE_BUILD_TYPE=Release -DEDLIB_BUILD_EXAMPLES=False -DBUILD_TESTING=False -DEDLIB_OMIT_README_RST=1 -DBUILD_SHARED_LIBS=ON cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_BUILD_TYPE=Release -DEDLIB_BUILD_EXAMPLES=False -DBUILD_TESTING=False -DEDLIB_OMIT_README_RST=1 -DBUILD_SHARED_LIBS=ON .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Setting warning flags -- Performing Test WOLD_STYLE_CAST -- Performing Test WOLD_STYLE_CAST - Success -- Performing Test WSHADOW -- Performing Test WSHADOW - Success -- Configuring done (2.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY EDLIB_OMIT_README_RST FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libedlib-1.2.7' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libedlib-1.2.7' dh_auto_build --buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libedlib-1.2.7 -B/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f 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/build/reproducible-path/libedlib-1.2.7 /build/reproducible-path/libedlib-1.2.7 /build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu /build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu /build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu/CMakeFiles/edlib_static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' make -f CMakeFiles/edlib.dir/build.make CMakeFiles/edlib.dir/build make[4]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' make -f CMakeFiles/edlib_static.dir/build.make CMakeFiles/edlib_static.dir/build make[4]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' [ 16%] Building CXX object CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o /usr/bin/c++ -DDLIB_BUILD -DEDLIB_SHARED -Dedlib_EXPORTS -I/build/reproducible-path/libedlib-1.2.7/edlib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wold-style-cast -Wshadow -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++14 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o -MF CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o.d -o CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o -c /build/reproducible-path/libedlib-1.2.7/edlib/src/edlib.cpp [ 33%] Building CXX object CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o /usr/bin/c++ -I/build/reproducible-path/libedlib-1.2.7/edlib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wold-style-cast -Wshadow -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++14 -MD -MT CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o -MF CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o.d -o CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o -c /build/reproducible-path/libedlib-1.2.7/edlib/src/edlib.cpp [ 50%] Linking CXX static library lib/libedlib_static.a /usr/bin/cmake -P CMakeFiles/edlib_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/edlib_static.dir/link.txt --verbose=1 [ 66%] Linking CXX shared library lib/libedlib.so /usr/bin/cmake -E cmake_link_script CMakeFiles/edlib.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libedlib_static.a CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o /usr/bin/ranlib lib/libedlib_static.a make[4]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' [ 66%] Built target edlib_static make -f CMakeFiles/edlib-aligner.dir/build.make CMakeFiles/edlib-aligner.dir/depend make[4]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' cd /build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libedlib-1.2.7 /build/reproducible-path/libedlib-1.2.7 /build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu /build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu /build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu/CMakeFiles/edlib-aligner.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' make -f CMakeFiles/edlib-aligner.dir/build.make CMakeFiles/edlib-aligner.dir/build make[4]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' [ 83%] Building CXX object CMakeFiles/edlib-aligner.dir/apps/aligner/aligner.cpp.o /usr/bin/c++ -I/build/reproducible-path/libedlib-1.2.7/edlib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wold-style-cast -Wshadow -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++14 -MD -MT CMakeFiles/edlib-aligner.dir/apps/aligner/aligner.cpp.o -MF CMakeFiles/edlib-aligner.dir/apps/aligner/aligner.cpp.o.d -o CMakeFiles/edlib-aligner.dir/apps/aligner/aligner.cpp.o -c /build/reproducible-path/libedlib-1.2.7/apps/aligner/aligner.cpp [100%] Linking CXX executable bin/edlib-aligner /usr/bin/cmake -E cmake_link_script CMakeFiles/edlib-aligner.dir/link.txt --verbose=1 /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wold-style-cast -Wshadow -Wall -Wextra -pedantic -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/edlib.dir/link.d -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libedlib.so.1 -o lib/libedlib.so.1.2.7 CMakeFiles/edlib.dir/edlib/src/edlib.cpp.o /usr/bin/cmake -E cmake_symlink_library lib/libedlib.so.1.2.7 lib/libedlib.so.1 lib/libedlib.so make[4]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' [100%] Built target edlib /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wold-style-cast -Wshadow -Wall -Wextra -pedantic -O3 -DNDEBUG -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/edlib-aligner.dir/link.d "CMakeFiles/edlib-aligner.dir/apps/aligner/aligner.cpp.o" -o bin/edlib-aligner lib/libedlib_static.a make[4]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' [100%] Built target edlib-aligner make[3]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' # /usr/bin/make --directory=bindings/python EDLIB_OMIT_README_RST=1 /usr/bin/make --directory=bindings/python edlib pyedlib.bycython.cpp make[2]: Entering directory '/build/reproducible-path/libedlib-1.2.7/bindings/python' # create a clean (maybe updated) copy of edlib src rm -rf edlib && cp -r ../../edlib . cython3 --cplus edlib.pyx -o edlib.bycython.cpp /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/libedlib-1.2.7/bindings/python/edlib.pyx tree = Parsing.p_module(s, pxd, full_module_name) make[2]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/bindings/python' EDLIB_OMIT_README_RST=1 dh_auto_build --buildsystem=pybuild -- --dir bindings/python I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_ext building 'edlib' extension creating build/temp.linux-aarch64-cpython-313 creating build/temp.linux-aarch64-cpython-313/edlib/src aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iedlib/include -I/usr/include/python3.13 -c edlib.bycython.cpp -o build/temp.linux-aarch64-cpython-313/edlib.bycython.o -O3 -std=c++11 aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iedlib/include -I/usr/include/python3.13 -c edlib/src/edlib.cpp -o build/temp.linux-aarch64-cpython-313/edlib/src/edlib.o -O3 -std=c++11 aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/libedlib-1.2.7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/edlib.bycython.o build/temp.linux-aarch64-cpython-313/edlib/src/edlib.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/libedlib-1.2.7/.pybuild/cpython3_3.13_edlib/build/edlib.cpython-313-aarch64-linux-gnu.so /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[1]: Leaving directory '/build/reproducible-path/libedlib-1.2.7' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libedlib-1.2.7' `find . -name edlib-aligner -type f -executable` -p apps/aligner/test_data/query.fasta apps/aligner/test_data/target.fasta Using NW alignment mode. Reading queries... Read 1 queries, 110 residues total. Reading target fasta file... Read target, 109 residues. Comparing queries to target... Query #0 (110 residues): score = 17 T: MMEEERFAASADEIFHVTQEVC-RTASELTESESRNVIVDELFCVGVTEM (0 - 48) ||||||| | |||||||||| ||||||||||||||||||||||||||| Q: MMEEERFKA---EIFHVTQEVCNRTASELTESESRNVIVDELFCVGVTEM (0 - 46) T: VAEQIRVLAKDIEA---HA-RKTVQPQDVLDDLCCRRNEGL-EIINNF-K (49 - 92) | |||||||||||| || |||||||||| ||||||||| |||||| | Q: VWEQIRVLAKDIEAFAEHAGRKTVQPQDVL--LCCRRNEGLYEIINNFHK (47 - 94) T: AESIKSKKKKKE-STTB (93 - 108) ||||||||||| ||| Q: -ESIKSKKKKKENSTT- (94 - 109) Cpu time of searching: 0.000115 `find . -name runTests` make[1]: Leaving directory '/build/reproducible-path/libedlib-1.2.7' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/libedlib-1.2.7' dh_auto_install --buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/libedlib-1.2.7/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libedlib-1.2.7 -B/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig/edlib-1.pc -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/edlib/edlib-config.cmake -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/edlib/edlib-config-version.cmake -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/edlib/edlib-targets.cmake -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/edlib/edlib-targets-release.cmake -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.so.1.2.7 -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.so.1 -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.so -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/aarch64-linux-gnu/libedlib_static.a -- Installing: /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/include/edlib.h make[2]: Leaving directory '/build/reproducible-path/libedlib-1.2.7/obj-aarch64-linux-gnu' dh_auto_install --buildsystem=pybuild -- --dir bindings/python I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/libedlib-1.2.7/debian/python3-edlib running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_ext running install_lib creating /build/reproducible-path/libedlib-1.2.7/debian/python3-edlib/usr/lib/python3.13/dist-packages copying /build/reproducible-path/libedlib-1.2.7/.pybuild/cpython3_3.13_edlib/build/edlib.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/libedlib-1.2.7/debian/python3-edlib/usr/lib/python3.13/dist-packages running install_egg_info running egg_info creating edlib.egg-info writing edlib.egg-info/PKG-INFO writing dependency_links to edlib.egg-info/dependency_links.txt writing top-level names to edlib.egg-info/top_level.txt writing manifest file 'edlib.egg-info/SOURCES.txt' reading manifest file 'edlib.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'edlib.egg-info/SOURCES.txt' Copying edlib.egg-info to /build/reproducible-path/libedlib-1.2.7/debian/python3-edlib/usr/lib/python3.13/dist-packages/edlib-1.3.8.post2.egg-info Skipping SOURCES.txt running install_scripts make[1]: Leaving directory '/build/reproducible-path/libedlib-1.2.7' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libedlib-1.2.7' dh_install file-rename 's/_static\.a/.a/' `find debian -name libedlib_static.a` d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/aarch64-linux-gnu \ --movedev debian/tmp/usr/lib/*/pkgconfig usr/lib/aarch64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libedlib-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libedlib1/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.a debian/libedlib-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.so debian/libedlib-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.so.1 debian/libedlib1/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/libedlib-1.2.7/debian/tmp/usr/lib/aarch64-linux-gnu/libedlib.so.1.2.7 debian/libedlib1/usr/lib/aarch64-linux-gnu PKGDEV=libedlib-dev PKGSHL=libedlib1 install -d -m 755 debian/libedlib-dev/usr/include mv debian/tmp/usr/include/edlib.h debian/libedlib-dev/usr/include install -d -m 755 debian/libedlib-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/cmake debian/libedlib-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libedlib-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig debian/libedlib-dev/usr/lib/aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libedlib-1.2.7' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: debian/libedlib1/DEBIAN/symbols doesn't match completely debian/libedlib1.symbols --- debian/libedlib1.symbols (libedlib1_1.2.7-6_arm64) +++ dpkg-gensymbolsnAgwUl 2025-09-13 08:48:13.287240679 -1200 @@ -1,8 +1,8 @@ libedlib.so.1 libedlib1 #MINVER# * Build-Depends-Package: libedlib-dev - (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJRKcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 1.2.4 - (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 1.2.4 - (optional)_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 1.2.3 +#MISSING: 1.2.7-6# (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJRKcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 1.2.4 +#MISSING: 1.2.7-6# (optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 1.2.4 +#MISSING: 1.2.7-6# (optional)_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 1.2.3 edlibAlign@Base 1.2.3 edlibAlignmentToCigar@Base 1.2.3 edlibDefaultAlignConfig@Base 1.2.3 dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libedlib-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libedlib1-dbgsym' in '../libedlib1-dbgsym_1.2.7-6_arm64.deb'. dpkg-deb: building package 'libedlib1' in '../libedlib1_1.2.7-6_arm64.deb'. dpkg-deb: building package 'libedlib-dev' in '../libedlib-dev_1.2.7-6_arm64.deb'. dpkg-deb: building package 'edlib-aligner' in '../edlib-aligner_1.2.7-6_arm64.deb'. dpkg-deb: building package 'edlib-aligner-dbgsym' in '../edlib-aligner-dbgsym_1.2.7-6_arm64.deb'. dpkg-deb: building package 'python3-edlib' in '../python3-edlib_1.2.7-6_arm64.deb'. dpkg-deb: building package 'python3-edlib-dbgsym' in '../python3-edlib-dbgsym_1.2.7-6_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libedlib_1.2.7-6_arm64.buildinfo dpkg-genchanges --build=binary -O../libedlib_1.2.7-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3024026 and its subdirectories I: Current time: Sat Sep 13 08:48:15 -12 2025 I: pbuilder-time-stamp: 1757796495 Sat Sep 13 20:48:16 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sat Sep 13 20:48:17 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sat Sep 13 20:49:23 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sat Sep 13 20:49:24 UTC 2025 I: libedlib_1.2.7-6_arm64.changes: Format: 1.8 Date: Sat, 13 Jul 2024 20:49:11 +0200 Source: libedlib Binary: edlib-aligner edlib-aligner-dbgsym libedlib-dev libedlib1 libedlib1-dbgsym python3-edlib python3-edlib-dbgsym Architecture: arm64 Version: 1.2.7-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: edlib-aligner - edlib sequence alignment tool using edit distance libedlib-dev - library for sequence alignment using edit distance (devel) libedlib1 - library for sequence alignment using edit distance python3-edlib - library for sequence alignment using edit distance (Python3 modul Closes: 1015484 1075164 Changes: libedlib (1.2.7-6) unstable; urgency=medium . * d/libedlib1.symbols: mark symbols leaked by the compiler as optional. (Closes: #1015484, #1075164) * d/rules: always run LTO builds. * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: 05aa9d8a0d08871851b6c38ecba51287e59fafb0 115036 edlib-aligner-dbgsym_1.2.7-6_arm64.deb 1a3c5c498bcffc1d6b5dc15331d3c60cba4dec49 25592 edlib-aligner_1.2.7-6_arm64.deb a039020f30d25e5890a8b2800143a040ab109b8d 24892 libedlib-dev_1.2.7-6_arm64.deb dec9105f8232baf87fe20a10c8d4919d2ef9182a 76820 libedlib1-dbgsym_1.2.7-6_arm64.deb 09ab01d2abc13a58d5c8fc9efc0003dcd640c129 19300 libedlib1_1.2.7-6_arm64.deb 36e7a8c8528d73186ca13a91836e384114672c0a 8711 libedlib_1.2.7-6_arm64.buildinfo 56a4b5f05159bb7fd1eec52e77a250a8a5a8e4fa 310732 python3-edlib-dbgsym_1.2.7-6_arm64.deb ef70d27979246d18ee234fb0ad8d4406841e14f0 65764 python3-edlib_1.2.7-6_arm64.deb Checksums-Sha256: 8fa1e7d94e530a799347721ae0ef36a52e3d64a38fa4e259bdf1ae9c7fe7e4db 115036 edlib-aligner-dbgsym_1.2.7-6_arm64.deb 45e717bb3b5a4d759b0e4d15b4acb0a595a1136ee23fe32f5b043749e203e4c1 25592 edlib-aligner_1.2.7-6_arm64.deb cff864d8a68df6e1a3572c8252b62e3caebb85530ebdc91397c79f1db5e753d4 24892 libedlib-dev_1.2.7-6_arm64.deb ec322574ab17885aae0be785466c6eb17e8fc1c14353cd9ec7aaf40d9ac388b0 76820 libedlib1-dbgsym_1.2.7-6_arm64.deb bd1d5444ab1310a6a86ff588391be326e8e44ae16bb3aa5982c8733b50592bec 19300 libedlib1_1.2.7-6_arm64.deb 624f09445d067c045bfc6a58ad28e101154249a7538bd1021eae8ef5cf166d7c 8711 libedlib_1.2.7-6_arm64.buildinfo 77a95a2040f02d766f5e9a617dd90b9eddd98d7c9d00df95d647492befb7983c 310732 python3-edlib-dbgsym_1.2.7-6_arm64.deb b34b390bde3767f7550b82aa32b101dea75e7bda9a7c29d4092507a32413b4f4 65764 python3-edlib_1.2.7-6_arm64.deb Files: 1005a0200da167577b0267c288fb4690 115036 debug optional edlib-aligner-dbgsym_1.2.7-6_arm64.deb 0c7257e7614cdc13d1accc845ae41f0e 25592 science optional edlib-aligner_1.2.7-6_arm64.deb f042f149bf98ae2d5efcfe638b29b7df 24892 libdevel optional libedlib-dev_1.2.7-6_arm64.deb b1bef7cea50930ebb433c87f158ed9bf 76820 debug optional libedlib1-dbgsym_1.2.7-6_arm64.deb c1ca20c72d39a33f3bb303f08108bffc 19300 libs optional libedlib1_1.2.7-6_arm64.deb 648915bef18a5173233d64502ce17478 8711 science optional libedlib_1.2.7-6_arm64.buildinfo f8efac6229908e3262decf0f9aaf80ae 310732 debug optional python3-edlib-dbgsym_1.2.7-6_arm64.deb f827482329088ad463e35eae55b10d22 65764 python optional python3-edlib_1.2.7-6_arm64.deb Sat Sep 13 20:49:25 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_10-96985.service; invocation ID: e0862cbb8abe4762a7674ba8819883da # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.biIEOZAe/libedlib_1.2.7-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.biIEOZAe/libedlib_1.2.7-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.biIEOZAe/libedlib_1.2.7-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.biIEOZAe/b1/libedlib_1.2.7-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.biIEOZAe/b2/libedlib_1.2.7-6_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 234ms CPU time consumed: 182ms Memory peak: 18.7M (swap: 0B) Sat Sep 13 21:02:20 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sat Sep 13 21:02:20 UTC 2025 I: libedlib from forky built successfully and reproducibly on arm64. Sat Sep 13 21:02:23 UTC 2025 I: Removing signed libedlib_1.2.7-6_arm64.buildinfo.asc files: removed './b1/libedlib_1.2.7-6_arm64.buildinfo.asc' removed './b2/libedlib_1.2.7-6_arm64.buildinfo.asc'