Fri Sep 5 06:27:41 UTC 2025 I: starting to build libfreecontact-perl/forky/arm64 on jenkins on '2025-09-05 06:27' Fri Sep 5 06:27:41 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_8/87047/console.log Fri Sep 5 06:27:41 UTC 2025 I: Downloading source for forky/libfreecontact-perl=0.08-11 --2025-09-05 06:27:41-- http://deb.debian.org/debian/pool/main/libf/libfreecontact-perl/libfreecontact-perl_0.08-11.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2221 (2.2K) [text/prs.lines.tag] Saving to: ‘libfreecontact-perl_0.08-11.dsc’ 0K .. 100% 125M=0s 2025-09-05 06:27:41 (125 MB/s) - ‘libfreecontact-perl_0.08-11.dsc’ saved [2221/2221] Fri Sep 5 06:27:41 UTC 2025 I: libfreecontact-perl_0.08-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libfreecontact-perl Binary: libfreecontact-perl Architecture: any Version: 0.08-11 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/owiki/index.php/FreeContact Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/libfreecontact-perl Vcs-Git: https://salsa.debian.org/med-team/libfreecontact-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, libextutils-xspp-perl, libfreecontact-dev, perl:native, perl-xs-dev Package-List: libfreecontact-perl deb perl optional arch=any Checksums-Sha1: dea098c8025b42e79227265dd74252ceedbfa007 58672 libfreecontact-perl_0.08.orig.tar.gz 3b0a97162587c7e46cba68ae309e43c94662ad8f 5132 libfreecontact-perl_0.08-11.debian.tar.xz Checksums-Sha256: 7386762985b9e36ec13379948528f1f18e49cf799ba5436a46aa60e9cb041911 58672 libfreecontact-perl_0.08.orig.tar.gz 96474d3851832c4b85f52d8d967069a99abb760d2532810e85e4c3e043cd10d8 5132 libfreecontact-perl_0.08-11.debian.tar.xz Files: 798e25cfc3954e027d208f62dd3fe6ea 58672 libfreecontact-perl_0.08.orig.tar.gz e03172a11b705b97bbe7846bc23def7e 5132 libfreecontact-perl_0.08-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmi3TNIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGu4w//eWMejCWv4k1PmX6+kpmwnU8TFRdHKjyi m7wrh87xfzUsHzCGi4hrk5AsDUMDmuhQxxHc18aPvy9zedkjnSTIZDUolZ8y9zHn qCz/ftmzw3PxnCosqlcjW1tJqh+W3LxrVXqP7QZKS8TfdwWyZltAbrHrgyn3zpeV yZQhQ9TeztPxnQT7KggFGlh/zD/k9liYGSH37waoRU1keYW3MxDNzTSH6iK6+s2S 9X/pZXINBHlCIXEmbtU+Lc6QSIJ5l8ktlrrXCWenplwAQL6XK3Pb9IoNn0Gx6lS9 IZ5iJDLm8bFP1FWX6k8mXGLKIg9SQp+8whWimSjqk8C6SSTERBTZ+1gr/eE+Mec0 Osjpt5ZGdc+gZxQS5ZW7j7wHfX6+h85kvj86TqRZZvhRQ4AMePu+AYV92E+zsvZa ELNRNHDOUfR9uD/gg/mLvSotqLonSk1MmlQwx67c1rfDlVzM3/NinbMvQqtQXNyB Bl4WaBL9Wd7OiFCYcofgzc4xzQ3B82lkUNBtlUEM4kXhynnFculDWXahPERSekic j8IVJv6/Uu66JfUmJAW/OnPVR5I8vtYTv06o1pRpXLe9ZvQeUTbyfV2y4uSHryr0 h/8/pN/xPEkchxy7gLOXLkb1tROxw7OzXIXYnxUWnnAi4mDPHuaiOjm5xL+W0+UL aduy+LXaDCU= =YbvZ -----END PGP SIGNATURE----- Fri Sep 5 06:27:41 UTC 2025 I: Checking whether the package is not for us Fri Sep 5 06:27:41 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Fri Sep 5 06:27:41 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Fri Sep 5 06:29:09 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 4 18:27:43 -12 2025 I: pbuilder-time-stamp: 1757053663 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libfreecontact-perl_0.08-11.dsc] I: copying [./libfreecontact-perl_0.08.orig.tar.gz] I: copying [./libfreecontact-perl_0.08-11.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libfreecontact-perl_0.08-11.dsc: no acceptable signature found dpkg-source: info: extracting libfreecontact-perl in libfreecontact-perl-0.08 dpkg-source: info: unpacking libfreecontact-perl_0.08.orig.tar.gz dpkg-source: info: unpacking libfreecontact-perl_0.08-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Fix-timing-initialization.patch dpkg-source: info: applying missing-use-carp.patch dpkg-source: info: applying 0001-Remove-C-reference-markers-from-XS-code.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/228968/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='3d3e7acbee83433584229d3399de9aee' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='228968' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PODhK1Ud/pbuilderrc_0pt5 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PODhK1Ud/b1 --logfile b1/build.log libfreecontact-perl_0.08-11.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.41+deb13-cloud-arm64 #1 SMP Debian 6.12.41-1 (2025-08-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/228968/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, libextutils-xspp-perl, libfreecontact-dev, perl:native, perl-xs-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20011 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on libextutils-xspp-perl; however: Package libextutils-xspp-perl is not installed. pbuilder-satisfydepends-dummy depends on libfreecontact-dev; however: Package libfreecontact-dev is not installed. pbuilder-satisfydepends-dummy depends on perl:native. pbuilder-satisfydepends-dummy depends on perl-xs-dev; however: Package perl-xs-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libextutils-xspp-perl{a} libfile-stripnondeterminism-perl{a} libfreecontact-dev{a} libfreecontact0t64{a} libgfortran5{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libperl-dev{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 14.6 MB of archives. After unpacking 59.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-1 [93.8 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 12 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.14.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.14.2-1 [8768 B] Get: 23 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libblas3 arm64 3.12.1-6 [104 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libextutils-xspp-perl all 0.1800-3 [146 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-2 [390 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 liblapack3 arm64 3.12.1-6 [1820 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libfreecontact0t64 arm64 1.0.21-15 [74.8 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libfreecontact-dev arm64 1.0.21-15 [85.8 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libperl-dev arm64 5.40.1-6 [1019 kB] Fetched 14.6 MB in 0s (85.3 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20011 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-1_arm64.deb ... Unpacking bsdextrautils (2.41.1-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package architecture-properties:arm64. Preparing to unpack .../10-architecture-properties_0.2.6_arm64.deb ... Unpacking architecture-properties:arm64 (0.2.6) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.2-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../24-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../25-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../30-libblas3_3.12.1-6_arm64.deb ... Unpacking libblas3:arm64 (3.12.1-6) ... Selecting previously unselected package libextutils-xspp-perl. Preparing to unpack .../31-libextutils-xspp-perl_0.1800-3_all.deb ... Unpacking libextutils-xspp-perl (0.1800-3) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../32-libgfortran5_15.2.0-2_arm64.deb ... Unpacking libgfortran5:arm64 (15.2.0-2) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../33-liblapack3_3.12.1-6_arm64.deb ... Unpacking liblapack3:arm64 (3.12.1-6) ... Selecting previously unselected package libfreecontact0t64:arm64. Preparing to unpack .../34-libfreecontact0t64_1.0.21-15_arm64.deb ... Unpacking libfreecontact0t64:arm64 (1.0.21-15) ... Selecting previously unselected package libfreecontact-dev:arm64. Preparing to unpack .../35-libfreecontact-dev_1.0.21-15_arm64.deb ... Unpacking libfreecontact-dev:arm64 (1.0.21-15) ... Selecting previously unselected package libperl-dev:arm64. Preparing to unpack .../36-libperl-dev_5.40.1-6_arm64.deb ... Unpacking libperl-dev:arm64 (5.40.1-6) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-1) ... Setting up libextutils-xspp-perl (0.1800-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up architecture-properties:arm64 (0.2.6) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libperl-dev:arm64 (5.40.1-6) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:arm64 (3.12.1-6) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libgfortran5:arm64 (15.2.0-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.2-1) ... Setting up liblapack3:arm64 (3.12.1-6) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.2-1) ... Setting up libfreecontact0t64:arm64 (1.0.21-15) ... Setting up groff-base (1.23.0-9) ... Setting up libfreecontact-dev:arm64 (1.0.21-15) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libfreecontact-perl-0.08/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libfreecontact-perl_0.08-11_source.changes dpkg-buildpackage: info: source package libfreecontact-perl dpkg-buildpackage: info: source version 0.08-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by gregor herrmann dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_auto_configure -- OPTIMIZE="-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard" LD="'aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now" "OPTIMIZE=-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard" "LD='aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for FreeContact Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' Running Mkbootstrap for FreeContact () "/usr/bin/perl" "/usr/share/perl/5.40/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.40/ExtUtils/typemap' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/perlobject.map' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/typemap' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/typemap' FreeContact.xs > FreeContact.xsc cp lib/FreeContact.pm blib/lib/FreeContact.pm AutoSplitting blib/lib/FreeContact.pm (blib/lib/auto/FreeContact) chmod 644 "FreeContact.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 mv FreeContact.xsc FreeContact.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DVERSION=\"0.08\" -DXS_VERSION=\"0.08\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" FreeContact.c cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ rm -f blib/arch/auto/FreeContact/FreeContact.so 'aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong FreeContact.o -o blib/arch/auto/FreeContact/FreeContact.so \ -lfreecontact \ chmod 755 blib/arch/auto/FreeContact/FreeContact.so Manifying 1 pod document make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/01FreeContact.t .. 1..3 ok 1 - use FreeContact; ok 2 - FreeContact->can(...) ok 3 - FreeContact::Predictor->can(...) ok will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.009431 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.16902 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 5.62044 secs, inverted matrix (incl LUf) in 20.5103 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 all done in 20.9187 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.004606 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.201101 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 11.1727 secs will try rho 0.00178064, exact solution  iteration = 1 iteration = 2 iteration = 3 iteration = 4will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.103409 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.98344 secs, inverted matrix (incl LUf) in 14.1882 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 t/02test.t ......... 1..10 ok 1 - use FreeContact; ok 2 - An object of class 'FreeContact::Predictor' isa 'FreeContact::Predictor' ok 3 ok 4 ok 5 - precision test ok 6 - timing results test ok 7 ok 8 ok 9 - wtot test ok 10 - wtot precision test ok All tests successful. Files=2, Tests=13, 50 wallclock secs ( 0.02 usr 0.01 sys + 30.40 cusr 0.15 csys = 30.58 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libfreecontact-perl/ make -j12 install DESTDIR=/build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 Manifying 1 pod document Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/FreeContact/FreeContact.so Installing /build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/FreeContact.pm Installing /build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/FreeContact/autosplit.ix Installing /build/reproducible-path/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/share/man/man3/FreeContact.3pm make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_gencontrol -- '-VDescription=FreeContact is a protein residue contact predictor optimized for speed.${Newline}Its input is a multiple sequence alignment. FreeContact can function as an${Newline}accelerated drop-in for the published contact predictors${Newline}EVfold-mfDCA of DS. Marks (2011) and${Newline}PSICOV of D. Jones (2011).${Newline}${Newline}FreeContact is accelerated by a combination of vector instructions, multiple${Newline}threads, and faster implementation of key parts.${Newline}Depending on the alignment, 8-fold or higher speedups are possible.${Newline}${Newline}A sufficiently large alignment is required for meaningful results.${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count${Newline}bigger than the length of the query sequence should be used. Alignments with${Newline}tens of thousands of (effective) sequences are considered good input.${Newline}${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite${Newline}can be used to generate the alignments, for example.' make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' dh_md5sums dh_builddeb dpkg-deb: building package 'libfreecontact-perl-dbgsym' in '../libfreecontact-perl-dbgsym_0.08-11_arm64.deb'. dpkg-deb: building package 'libfreecontact-perl' in '../libfreecontact-perl_0.08-11_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libfreecontact-perl_0.08-11_arm64.buildinfo dpkg-genchanges --build=binary -O../libfreecontact-perl_0.08-11_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/228968 and its subdirectories I: Current time: Thu Sep 4 18:29:09 -12 2025 I: pbuilder-time-stamp: 1757053749 Fri Sep 5 06:29:10 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Fri Sep 5 06:29:10 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Fri Sep 5 06:30:19 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Fri Sep 5 06:30:19 UTC 2025 I: libfreecontact-perl_0.08-11_arm64.changes: Format: 1.8 Date: Tue, 02 Sep 2025 20:12:13 +0200 Source: libfreecontact-perl Binary: libfreecontact-perl libfreecontact-perl-dbgsym Architecture: arm64 Version: 0.08-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: gregor herrmann Description: libfreecontact-perl - fast protein contact predictor - binding for Perl Closes: 1102805 1112626 Changes: libfreecontact-perl (0.08-11) unstable; urgency=medium . * Team upload. . [ Andreas Tille ] * debian/salsa-ci.yml: Build is prevented on i386 . [ gregor herrmann ] * Update Build-Depends for cross builds. (Closes: #1102805) * Add patch to remove C++ reference markers from XS code for Perl 5.42 / ExtUtils::ParseXS compatibility. Thanks to Niko Tyni for the patch. (Closes: #1112626) * Declare compliance with Debian Policy 4.7.2. * Remove B-D on debhelper (covered by debhelper-compat). * debian/rules: drop override_dh_auto_clean. Makefile.old is removed by ExtUtils::MakeMaker by now. * Don't install boilerplate README. Checksums-Sha1: c2cc114cccd1799b44ad77e205af444124a14c5f 162888 libfreecontact-perl-dbgsym_0.08-11_arm64.deb b7604e127a76aa69eb9fb5ec6e95f6e60ff04888 5225 libfreecontact-perl_0.08-11_arm64.buildinfo 07c62fdd11aacb0ae1eff832a6b6ff74e3cb640e 61572 libfreecontact-perl_0.08-11_arm64.deb Checksums-Sha256: de5df3a7747ccecd647303dcf406a3c205d171ae8a673259c058bcfe3cc6443b 162888 libfreecontact-perl-dbgsym_0.08-11_arm64.deb 5ed3722da19965a914f943f3dc73d89a9730b62a1e4ef150d35a9c3a2742d2f1 5225 libfreecontact-perl_0.08-11_arm64.buildinfo 9d00dcc137e8f7ab295bb8718ae08e16b56f9a08f22077263b3b108784a01a44 61572 libfreecontact-perl_0.08-11_arm64.deb Files: df76f4addeaeec7df657876aa10985c8 162888 debug optional libfreecontact-perl-dbgsym_0.08-11_arm64.deb ac98a9aa469c7b852dd7d381a02ccf5d 5225 perl optional libfreecontact-perl_0.08-11_arm64.buildinfo f2ed07c35f3eb297db4bec245fc4ffd3 61572 perl optional libfreecontact-perl_0.08-11_arm64.deb Fri Sep 5 06:30:20 UTC 2025 I: diffoscope 305 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_8-87047.service; invocation ID: 534b0c8030514f3188adc9068867d494 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.PODhK1Ud/libfreecontact-perl_0.08-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.PODhK1Ud/libfreecontact-perl_0.08-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.PODhK1Ud/libfreecontact-perl_0.08-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.PODhK1Ud/b1/libfreecontact-perl_0.08-11_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.PODhK1Ud/b2/libfreecontact-perl_0.08-11_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 222ms CPU time consumed: 173ms Memory peak: 17.7M (swap: 0B) Fri Sep 5 06:30:21 UTC 2025 I: diffoscope 305 found no differences in the changes files, and a .buildinfo file also exists. Fri Sep 5 06:30:21 UTC 2025 I: libfreecontact-perl from forky built successfully and reproducibly on arm64. Fri Sep 5 06:30:22 UTC 2025 I: Removing signed libfreecontact-perl_0.08-11_arm64.buildinfo.asc files: removed './b1/libfreecontact-perl_0.08-11_arm64.buildinfo.asc' removed './b2/libfreecontact-perl_0.08-11_arm64.buildinfo.asc'