Mon Oct 20 06:41:19 UTC 2025 I: starting to build libvcflib/forky/arm64 on jenkins on '2025-10-20 06:41' Mon Oct 20 06:41:19 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/101470/console.log Mon Oct 20 06:41:19 UTC 2025 I: Downloading source for forky/libvcflib=1.0.12+dfsg-1 --2025-10-20 06:41:19-- http://deb.debian.org/debian/pool/main/libv/libvcflib/libvcflib_1.0.12%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2408 (2.4K) [text/prs.lines.tag] Saving to: ‘libvcflib_1.0.12+dfsg-1.dsc’ 0K .. 100% 275M=0s 2025-10-20 06:41:19 (275 MB/s) - ‘libvcflib_1.0.12+dfsg-1.dsc’ saved [2408/2408] Mon Oct 20 06:41:19 UTC 2025 I: libvcflib_1.0.12+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libvcflib Binary: libvcflib2, libvcflib-dev, libvcflib-tools Architecture: any Version: 1.0.12+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/vcflib/vcflib Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libvcflib Vcs-Git: https://salsa.debian.org/med-team/libvcflib.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, cmake, discount , libtabixpp-dev, libbz2-dev, libdisorder-dev, libhts-dev, libsmithwaterman-dev, libssw-dev, libfastahack-dev, libwfa2-dev, pkgconf, libgtest-dev , python3-dev, python3-pybind11 Package-List: libvcflib-dev deb libdevel optional arch=any libvcflib-tools deb science optional arch=any libvcflib2 deb libs optional arch=any Checksums-Sha1: 31dbe5ffd81fa118e1e9f2b62c4e1a0850e8bfd4 9046576 libvcflib_1.0.12+dfsg.orig.tar.xz e80a27aeb948276fd8ba0eed9684d8ea7d39e028 74928 libvcflib_1.0.12+dfsg-1.debian.tar.xz Checksums-Sha256: d8872d3b6f9dae11b0f69f4fca0a65ae777f89a64805504f7dc66320957c444b 9046576 libvcflib_1.0.12+dfsg.orig.tar.xz b0157d153014d3e346fdbe1acc2d22faaa87c03f39b7b7c9b02a3f65112676b7 74928 libvcflib_1.0.12+dfsg-1.debian.tar.xz Files: b1ca4ffaf8b6974083546585893f4b8a 9046576 libvcflib_1.0.12+dfsg.orig.tar.xz e17502ab3ca94c22b87aec68db0082f4 74928 libvcflib_1.0.12+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmex7xARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHnWA//aqtw6jROSUYnC8ALoGMA6Svxc+5mB0Ua NC1OD8zqyHIgPqUmBuFDbRF6pRLcsF43WL2kWXX/DoNz7/YqbFzKOjcH8whJol8f 7sOzt66S/qxfe+MhAbEpblz4UUyFR368h4rjTRJt2dG/hfc4dQgIUYpmNTYa7GuC V1ruJNqd8P3ro0r6tg0w2kzoRienTI9Wb+DhjGmkfvSwfdTIirPsJYrO++f1XZtA JDXhRHWocG6xLbWYsYxTqlplqJj+VLaoQbSgtZhjmn1LzT7jwqfgkYvy+b83OLv8 86+CzWeOKfBCXnEoL45GA6cu73CnNA1M5xfDjXWL3PcIjS2UtZBsN/RabVpRL2kn a9EeuflRiR7L1DcHcXt4Y5XD4w18L1O7AEgJAootdk9LXwDm9w0JtuqJcfsHE+l1 vU0mTdT4hf4QEHtyw/7+wiE0mE0kn8PWb/Dmm5sw2m/DWHsIwCyyaPfbAcCzU3X3 cgGbY3CSatDNKXaHthqqAsfn14T6xDp/zK1Yki7yHSMm+HjUK8J+EYsn3oBQ/1mg BWl/ctTMHDthg202rhtaCb7Y9dylxgg71H4MwcWlbjJqJyZ2+4Pz+vwR6DTwC29Y 36yZjNlqRTxEm/RjPxcxyeb6WwrZLnTi6JrW5xHL9b+BwvTxQxhgl89f4ybz6p2+ e+SWxnLQujY= =tFZp -----END PGP SIGNATURE----- Mon Oct 20 06:41:19 UTC 2025 I: Checking whether the package is not for us Mon Oct 20 06:41:19 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Mon Oct 20 06:41:19 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Mon Oct 20 06:43:23 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 22 01:04:21 -12 2026 I: pbuilder-time-stamp: 1795352661 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libvcflib_1.0.12+dfsg-1.dsc] I: copying [./libvcflib_1.0.12+dfsg.orig.tar.xz] I: copying [./libvcflib_1.0.12+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libvcflib_1.0.12+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting libvcflib in libvcflib-1.0.12+dfsg dpkg-source: info: unpacking libvcflib_1.0.12+dfsg.orig.tar.xz dpkg-source: info: unpacking libvcflib_1.0.12+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_fsom dpkg-source: info: applying use_debian_packaged_smithwaterman.patch dpkg-source: info: applying use_debian_packaged_fastahack.patch dpkg-source: info: applying use_debian_packaged_libssw.patch dpkg-source: info: applying shared_lib.patch dpkg-source: info: applying pkg-config.patch dpkg-source: info: applying tabix_linking dpkg-source: info: applying wfa2_linking dpkg-source: info: applying cmakelists-fixups.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1518625/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='aeb4accbd1e84ab8bba3356d890312f4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1518625' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1gycwPHz/pbuilderrc_0KeY --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1gycwPHz/b1 --logfile b1/build.log libvcflib_1.0.12+dfsg-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1518625/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, cmake, discount, libtabixpp-dev, libbz2-dev, libdisorder-dev, libhts-dev, libsmithwaterman-dev, libssw-dev, libfastahack-dev, libwfa2-dev, pkgconf, libgtest-dev, python3-dev, python3-pybind11 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on discount; however: Package discount is not installed. pbuilder-satisfydepends-dummy depends on libtabixpp-dev; however: Package libtabixpp-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libdisorder-dev; however: Package libdisorder-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libsmithwaterman-dev; however: Package libsmithwaterman-dev is not installed. pbuilder-satisfydepends-dummy depends on libssw-dev; however: Package libssw-dev is not installed. pbuilder-satisfydepends-dummy depends on libfastahack-dev; however: Package libfastahack-dev is not installed. pbuilder-satisfydepends-dummy depends on libwfa2-dev; however: Package libwfa2-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11; however: Package python3-pybind11 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} discount{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdisorder-dev{a} libdisorder0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfastahack-dev{a} libfastahack0{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgtest-dev{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libjs-sphinxdoc{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmarkdown2{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl0{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsmithwaterman-dev{a} libsmithwaterman0{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssw-dev{a} libssw0{a} libtabixpp-dev{a} libtabixpp0t64{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libwfa2-0{a} libwfa2-dev{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybind11-dev{a} python3{a} python3-dev{a} python3-minimal{a} python3-pybind11{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libeigen3-dev libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix python3-numpy wget 0 packages upgraded, 142 newly installed, 0 to remove and 0 not upgraded. Need to get 60.9 MB of archives. After unpacking 243 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.8-1 [858 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.8-1 [2062 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.8-1 [1899 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.8-1 [765 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-1 [94.3 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 28 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 43 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.16.0-4 [368 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get: 63 http://deb.debian.org/debian forky/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 70 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libmarkdown2 arm64 2.2.7-2.1 [33.1 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 discount arm64 2.2.7-2.1 [24.5 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 googletest all 1.17.0-1 [522 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libcurl3t64-gnutls arm64 8.16.0-4 [362 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 libunbound8 arm64 1.24.0-2 [559 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libgnutls-dane0t64 arm64 3.8.10-2 [456 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 libgnutls-openssl27t64 arm64 3.8.10-2 [456 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libp11-kit-dev arm64 0.25.9-2 [220 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get: 97 http://deb.debian.org/debian forky/main arm64 nettle-dev arm64 3.10.2-1 [1319 kB] Get: 98 http://deb.debian.org/debian forky/main arm64 libgnutls28-dev arm64 3.8.10-2 [1438 kB] Get: 99 http://deb.debian.org/debian forky/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 100 http://deb.debian.org/debian forky/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 101 http://deb.debian.org/debian forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 102 http://deb.debian.org/debian forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 103 http://deb.debian.org/debian forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 104 http://deb.debian.org/debian forky/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 105 http://deb.debian.org/debian forky/main arm64 libnghttp3-dev arm64 1.12.0-1 [91.6 kB] Get: 106 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.16.0-1 [24.6 kB] Get: 107 http://deb.debian.org/debian forky/main arm64 libngtcp2-dev arm64 1.16.0-1 [183 kB] Get: 108 http://deb.debian.org/debian forky/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 109 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 110 http://deb.debian.org/debian forky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Get: 111 http://deb.debian.org/debian forky/main arm64 libssl-dev arm64 3.5.4-1 [3377 kB] Get: 112 http://deb.debian.org/debian forky/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 113 http://deb.debian.org/debian forky/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 114 http://deb.debian.org/debian forky/main arm64 libcurl4-gnutls-dev arm64 8.16.0-4 [498 kB] Get: 115 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 116 http://deb.debian.org/debian forky/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 117 http://deb.debian.org/debian forky/main arm64 libdisorder0 arm64 0.0.2+git20130809.8062ee1-4+b2 [4920 B] Get: 118 http://deb.debian.org/debian forky/main arm64 libdisorder-dev arm64 0.0.2+git20130809.8062ee1-4+b2 [4888 B] Get: 119 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.3-1 [150 kB] Get: 120 http://deb.debian.org/debian forky/main arm64 libfastahack0 arm64 1.0.0+dfsg-11+b2 [23.6 kB] Get: 121 http://deb.debian.org/debian forky/main arm64 libfastahack-dev arm64 1.0.0+dfsg-11+b2 [26.1 kB] Get: 122 http://deb.debian.org/debian forky/main arm64 libgtest-dev arm64 1.17.0-1 [247 kB] Get: 123 http://deb.debian.org/debian forky/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 124 http://deb.debian.org/debian forky/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 125 http://deb.debian.org/debian forky/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Get: 126 http://deb.debian.org/debian forky/main arm64 libhts-dev arm64 1.22.1+ds2-1 [1684 kB] Get: 127 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-7 [27.6 kB] Get: 128 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.8-1 [2057 kB] Get: 129 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.8-1 [5020 kB] Get: 130 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 131 http://deb.debian.org/debian forky/main arm64 libsmithwaterman0 arm64 0.0+git20160702.2610e25-12+b2 [32.4 kB] Get: 132 http://deb.debian.org/debian forky/main arm64 libsmithwaterman-dev arm64 0.0+git20160702.2610e25-12+b2 [37.9 kB] Get: 133 http://deb.debian.org/debian forky/main arm64 libssw0 arm64 1.1-15+b2 [20.0 kB] Get: 134 http://deb.debian.org/debian forky/main arm64 libssw-dev arm64 1.1-15+b2 [23.4 kB] Get: 135 http://deb.debian.org/debian forky/main arm64 libtabixpp0t64 arm64 1.1.2-2.1+b1 [9504 B] Get: 136 http://deb.debian.org/debian forky/main arm64 libtabixpp-dev arm64 1.1.2-2.1+b1 [9052 B] Get: 137 http://deb.debian.org/debian forky/main arm64 libwfa2-0 arm64 2.3.3-4+b2 [55.1 kB] Get: 138 http://deb.debian.org/debian forky/main arm64 libwfa2-dev arm64 2.3.3-4+b2 [74.8 kB] Get: 139 http://deb.debian.org/debian forky/main arm64 pybind11-dev all 3.0.1-2 [240 kB] Get: 140 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.8-1 [505 kB] Get: 141 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 142 http://deb.debian.org/debian forky/main arm64 python3-pybind11 all 3.0.1-2 [251 kB] Fetched 60.9 MB in 0s (128 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.8-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.8-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.8-1_arm64.deb ... Unpacking python3.13-minimal (3.13.8-1) ... Setting up libpython3.13-minimal:arm64 (3.13.8-1) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20334 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.8-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.8-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.8-1_arm64.deb ... Unpacking python3.13 (3.13.8-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21349 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-9_arm64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.41.2-1_arm64.deb ... Unpacking bsdextrautils (2.41.2-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package architecture-properties:arm64. Preparing to unpack .../013-architecture-properties_0.2.6_arm64.deb ... Unpacking architecture-properties:arm64 (0.2.6) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../019-cmake-data_4.1.1+really3.31.6-2_all.deb ... Unpacking cmake-data (4.1.1+really3.31.6-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../020-libxml2-16_2.14.6+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../021-libarchive13t64_3.7.4-4+b1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-4+b1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../022-libnghttp3-9_1.12.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../023-libngtcp2-16_1.16.0-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.16.0-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../024-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../025-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../026-libcom-err2_1.47.2-3+b3_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../027-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../028-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../029-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../030-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../031-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../032-libidn2-0_2.3.8-4_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../033-libsasl2-modules-db_2.1.28+dfsg1-10_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../034-libsasl2-2_2.1.28+dfsg1-10_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../035-libldap2_2.6.10+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../036-libnghttp2-14_1.64.0-1.1+b1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Selecting previously unselected package libngtcp2-crypto-ossl0:arm64. Preparing to unpack .../037-libngtcp2-crypto-ossl0_1.16.0-1_arm64.deb ... Unpacking libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../038-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../039-libp11-kit0_0.25.9-2_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.9-2) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../040-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../041-libgnutls30t64_3.8.10-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.10-2) ... Selecting previously unselected package librtmp1:arm64. 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Setting up libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libuv1t64:arm64 (1.51.0-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libsmithwaterman0:arm64 (0.0+git20160702.2610e25-12+b2) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up libdeflate0:arm64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libwfa2-dev (2.3.3-4+b2) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up googletest (1.17.0-1) ... Setting up libfastahack0:arm64 (1.0.0+dfsg-11+b2) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-10) ... Setting up libfastahack-dev:arm64 (1.0.0+dfsg-11+b2) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Nov 22 13:04:46 UTC 2026. Universal Time is now: Sun Nov 22 13:04:46 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunbound8:arm64 (1.24.0-2) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-5) ... Setting up libexpat1-dev:arm64 (2.7.3-1) ... Setting up libjsoncpp26:arm64 (1.9.6-4) ... Setting up libproc2-0:arm64 (2:4.0.4-9) ... Setting up comerr-dev:arm64 (2.1-1.47.2-3+b3) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up libssl-dev:arm64 (3.5.4-1) ... Setting up autopoint (0.23.1-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libdisorder-dev:arm64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up libjs-sphinxdoc (8.2.3-7) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libvcflib-1.0.12+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libvcflib_1.0.12+dfsg-1_source.changes dpkg-buildpackage: info: source package libvcflib dpkg-buildpackage: info: source version 1.0.12+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' dh_auto_clean || true make[1]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' dh_autoreconf_clean -O--buildsystem=cmake debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' dh_clean find . -name "*.o" -delete rm -f README.html build/ rm -rf contrib/filevercmp contrib/multichoose contrib/intervaltree make[1]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' debian/rules binary dh binary --buildsystem cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' cp -a debian/ext/* contrib/ dh_auto_configure -- -DOPENMP=ON -DCMAKE_BUILD_RPATH_USE_ORIGIN=ON -DZIG=OFF -DWFA_GITMODULE=OFF -DHTSLIB_FOUND=ON -DTABIX_FOUND=ON cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DOPENMP=ON -DCMAKE_BUILD_RPATH_USE_ORIGIN=ON -DZIG=OFF -DWFA_GITMODULE=OFF -DHTSLIB_FOUND=ON -DTABIX_FOUND=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/lib/cmake/pybind11/pybind11Tools.cmake:44 (find_package) /usr/lib/cmake/pybind11/pybind11Common.cmake:226 (include) /usr/lib/cmake/pybind11/pybind11Config.cmake:257 (include) CMakeLists.txt:19 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.8", minimum required is "3.8") -- Found PythonLibs: /usr/lib/aarch64-linux-gnu/libpython3.13.so -- Performing Test HAS_FLTO_AUTO -- Performing Test HAS_FLTO_AUTO - Success -- Found pybind11: /usr/include (found version "3.0.1") -- Found BZip2: /usr/lib/aarch64-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Looking for lzma_auto_decoder in /usr/lib/aarch64-linux-gnu/liblzma.so -- Looking for lzma_auto_decoder in /usr/lib/aarch64-linux-gnu/liblzma.so - found -- Looking for lzma_easy_encoder in /usr/lib/aarch64-linux-gnu/liblzma.so -- Looking for lzma_easy_encoder in /usr/lib/aarch64-linux-gnu/liblzma.so - found -- Looking for lzma_lzma_preset in /usr/lib/aarch64-linux-gnu/liblzma.so -- Looking for lzma_lzma_preset in /usr/lib/aarch64-linux-gnu/liblzma.so - found -- Found LibLZMA: /usr/lib/aarch64-linux-gnu/liblzma.so (found version "5.8.1") -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Found CURL: /usr/lib/aarch64-linux-gnu/libcurl.so (found version "8.16.0") -- -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Checking for module 'htslib' -- Found htslib, version 1.22.1 -- Checking for module 'tabixpp' -- Package 'tabixpp', required by 'virtual:world', not found -- Checking for module 'libsmithwaterman' -- Found libsmithwaterman, version 0.0 -- Checking for module 'libfastahack' -- Found libfastahack, version 0.0 -- Using included tabixpp -- WFA using include /usr/include/wfa2lib Pandoc needs to be installed to generate the man pages -- Configuring done (4.2s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED TABIX_FOUND -- Build files have been written to: /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' dh_auto_build cd obj-aarch64-linux-gnu && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libvcflib-1.0.12+dfsg -B/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcflib.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object CMakeFiles/vcflib.dir/src/Variant.cpp.o [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/vcf-wfa.cpp.o [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/legacy.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/Variant.cpp.o -MF CMakeFiles/vcflib.dir/src/Variant.cpp.o.d -o CMakeFiles/vcflib.dir/src/Variant.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/Variant.cpp [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/canonicalize.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/vcf-wfa.cpp.o -MF CMakeFiles/vcflib.dir/src/vcf-wfa.cpp.o.d -o CMakeFiles/vcflib.dir/src/vcf-wfa.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcf-wfa.cpp /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/canonicalize.cpp.o -MF CMakeFiles/vcflib.dir/src/canonicalize.cpp.o.d -o CMakeFiles/vcflib.dir/src/canonicalize.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/canonicalize.cpp [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/var.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/legacy.cpp.o -MF CMakeFiles/vcflib.dir/src/legacy.cpp.o.d -o CMakeFiles/vcflib.dir/src/legacy.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/legacy.cpp [ 3%] Building CXX object CMakeFiles/vcflib.dir/src/rnglib.cpp.o [ 3%] Building CXX object CMakeFiles/vcflib.dir/src/cdflib.cpp.o [ 4%] Building CXX object CMakeFiles/vcflib.dir/src/pdflib.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o -MF CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o.d -o CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcf-c-api.cpp /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/rnglib.cpp.o -MF 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-D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/var.cpp.o -MF CMakeFiles/vcflib.dir/src/var.cpp.o.d -o CMakeFiles/vcflib.dir/src/var.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/var.cpp [ 6%] Building CXX object CMakeFiles/vcflib.dir/src/murmur3.cpp.o [ 6%] Building CXX object CMakeFiles/vcflib.dir/src/rkmh.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/cdflib.cpp.o -MF CMakeFiles/vcflib.dir/src/cdflib.cpp.o.d -o CMakeFiles/vcflib.dir/src/cdflib.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/cdflib.cpp /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/split.cpp.o -MF CMakeFiles/vcflib.dir/src/split.cpp.o.d -o CMakeFiles/vcflib.dir/src/split.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/split.cpp /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/rkmh.cpp.o -MF CMakeFiles/vcflib.dir/src/rkmh.cpp.o.d -o CMakeFiles/vcflib.dir/src/rkmh.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/rkmh.cpp /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/murmur3.cpp.o -MF CMakeFiles/vcflib.dir/src/murmur3.cpp.o.d -o CMakeFiles/vcflib.dir/src/murmur3.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/murmur3.cpp [ 6%] Building CXX object CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o -MF CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o.d -o CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/LeftAlign.cpp [ 7%] Building CXX object CMakeFiles/vcflib.dir/src/cigar.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/cigar.cpp.o -MF CMakeFiles/vcflib.dir/src/cigar.cpp.o.d -o CMakeFiles/vcflib.dir/src/cigar.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/cigar.cpp [ 7%] Building CXX object CMakeFiles/vcflib.dir/src/allele.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/src/allele.cpp.o -MF CMakeFiles/vcflib.dir/src/allele.cpp.o.d -o CMakeFiles/vcflib.dir/src/allele.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/allele.cpp [ 8%] Building C object CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o /usr/bin/cc -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o -MF CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o.d -o CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp/filevercmp.c [ 8%] Building C object CMakeFiles/vcflib.dir/contrib/c-progress-bar/progress.c.o /usr/bin/cc -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -fPIC -MD -MT CMakeFiles/vcflib.dir/contrib/c-progress-bar/progress.c.o -MF CMakeFiles/vcflib.dir/contrib/c-progress-bar/progress.c.o.d -o CMakeFiles/vcflib.dir/contrib/c-progress-bar/progress.c.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar/progress.c /build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar/progress.c: In function 'print_timedelta': /build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar/progress.c:79:28: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 79 | fprintf(stderr,"%lluh %llum %llus ", hours, minutes, seconds); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar/progress.c:79:34: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 79 | fprintf(stderr,"%lluh %llum %llus ", hours, minutes, seconds); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar/progress.c:79:40: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 5 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 79 | fprintf(stderr,"%lluh %llum %llus ", hours, minutes, seconds); | ~~~^ ~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu /build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar/progress.c:82:28: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 82 | fprintf(stderr,"%llum %02llus ", minutes, seconds); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar/progress.c:82:36: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 82 | fprintf(stderr,"%llum %02llus ", minutes, seconds); | ~~~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %02lu /build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar/progress.c:85:28: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 85 | fprintf(stderr,"%llu.%llus ", seconds, mseconds); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu /build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar/progress.c:85:33: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 85 | fprintf(stderr,"%llu.%llus ", seconds, mseconds); | ~~~^ ~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu [ 9%] Linking CXX shared library libvcflib.so /usr/bin/cmake -E cmake_link_script CMakeFiles/vcflib.dir/link.txt --verbose=1 /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libtabixpp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libwfa2.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libsmithwaterman.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libdisorder.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libfastahack.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/vcflib.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libvcflib.so.2 -o libvcflib.so.2 CMakeFiles/vcflib.dir/src/legacy.cpp.o "CMakeFiles/vcflib.dir/src/vcf-wfa.cpp.o" "CMakeFiles/vcflib.dir/src/vcf-c-api.cpp.o" CMakeFiles/vcflib.dir/src/Variant.cpp.o CMakeFiles/vcflib.dir/src/canonicalize.cpp.o CMakeFiles/vcflib.dir/src/rnglib.cpp.o CMakeFiles/vcflib.dir/src/var.cpp.o CMakeFiles/vcflib.dir/src/pdflib.cpp.o CMakeFiles/vcflib.dir/src/cdflib.cpp.o CMakeFiles/vcflib.dir/src/split.cpp.o CMakeFiles/vcflib.dir/src/rkmh.cpp.o CMakeFiles/vcflib.dir/src/murmur3.cpp.o CMakeFiles/vcflib.dir/src/LeftAlign.cpp.o CMakeFiles/vcflib.dir/src/cigar.cpp.o CMakeFiles/vcflib.dir/src/allele.cpp.o CMakeFiles/vcflib.dir/contrib/filevercmp/filevercmp.c.o "CMakeFiles/vcflib.dir/contrib/c-progress-bar/progress.c.o" -ltabixpp -lwfa2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so /usr/bin/cmake -E cmake_symlink_library libvcflib.so.2 libvcflib.so.2 libvcflib.so make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 9%] Built target vcflib make -f CMakeFiles/vcfecho.dir/build.make CMakeFiles/vcfecho.dir/depend make -f CMakeFiles/dumpContigsFromHeader.dir/build.make CMakeFiles/dumpContigsFromHeader.dir/depend make -f CMakeFiles/bFst.dir/build.make CMakeFiles/bFst.dir/depend make -f CMakeFiles/pVst.dir/build.make CMakeFiles/pVst.dir/depend make -f CMakeFiles/hapLrt.dir/build.make CMakeFiles/hapLrt.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfecho.dir/DependInfo.cmake "--color=" make -f CMakeFiles/popStats.dir/build.make CMakeFiles/popStats.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/dumpContigsFromHeader.dir/DependInfo.cmake "--color=" make -f CMakeFiles/wcFst.dir/build.make CMakeFiles/wcFst.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/bFst.dir/DependInfo.cmake "--color=" make -f CMakeFiles/iHS.dir/build.make CMakeFiles/iHS.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/pVst.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/hapLrt.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/popStats.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/wcFst.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/iHS.dir/DependInfo.cmake "--color=" make -f CMakeFiles/segmentFst.dir/build.make CMakeFiles/segmentFst.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/segmentFst.dir/DependInfo.cmake "--color=" make -f CMakeFiles/segmentIhs.dir/build.make CMakeFiles/segmentIhs.dir/depend make -f CMakeFiles/genotypeSummary.dir/build.make CMakeFiles/genotypeSummary.dir/depend make -f CMakeFiles/sequenceDiversity.dir/build.make CMakeFiles/sequenceDiversity.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/genotypeSummary.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu 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'/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/dumpContigsFromHeader.dir/build.make CMakeFiles/dumpContigsFromHeader.dir/build make -f CMakeFiles/pVst.dir/build.make CMakeFiles/pVst.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu 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'/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 10%] Building CXX object CMakeFiles/wcFst.dir/src/wcFst.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/popStats.dir/src/popStats.cpp.o -MF 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-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/wcFst.dir/src/wcFst.cpp.o -MF CMakeFiles/wcFst.dir/src/wcFst.cpp.o.d -o CMakeFiles/wcFst.dir/src/wcFst.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/wcFst.cpp make -f CMakeFiles/segmentFst.dir/build.make CMakeFiles/segmentFst.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/segmentIhs.dir/build.make CMakeFiles/segmentIhs.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 12%] Building CXX object CMakeFiles/pVst.dir/src/pVst.cpp.o make -f CMakeFiles/genotypeSummary.dir/build.make CMakeFiles/genotypeSummary.dir/build [ 11%] Building CXX object CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o make -f CMakeFiles/sequenceDiversity.dir/build.make CMakeFiles/sequenceDiversity.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/pVst.dir/src/pVst.cpp.o -MF CMakeFiles/pVst.dir/src/pVst.cpp.o.d -o CMakeFiles/pVst.dir/src/pVst.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/pVst.cpp /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -MF CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o.d -o CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/dumpContigsFromHeader.cpp [ 13%] Building CXX object CMakeFiles/iHS.dir/src/iHS.cpp.o [ 14%] Building CXX object CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o [ 15%] Building CXX object CMakeFiles/bFst.dir/src/bFst.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -MF CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o.d -o CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfecho.cpp /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/bFst.dir/src/bFst.cpp.o -MF CMakeFiles/bFst.dir/src/bFst.cpp.o.d -o CMakeFiles/bFst.dir/src/bFst.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/bFst.cpp /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/iHS.dir/src/iHS.cpp.o -MF CMakeFiles/iHS.dir/src/iHS.cpp.o.d -o CMakeFiles/iHS.dir/src/iHS.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/iHS.cpp [ 16%] Building CXX object CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o /usr/bin/c++ 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o -MF CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o.d -o CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/genotypeSummary.cpp [ 20%] Building CXX object CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -MF CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o.d -o CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/sequenceDiversity.cpp [ 20%] Linking CXX executable segmentFst /usr/bin/cmake -E cmake_link_script CMakeFiles/segmentFst.dir/link.txt --verbose=1 [ 20%] Linking CXX executable segmentIhs /usr/bin/cmake -E cmake_link_script CMakeFiles/segmentIhs.dir/link.txt --verbose=1 [ 20%] Linking CXX executable dumpContigsFromHeader /usr/bin/cmake -E cmake_link_script CMakeFiles/dumpContigsFromHeader.dir/link.txt --verbose=1 [ 20%] Linking CXX executable vcfecho /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfecho.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/segmentFst.dir/link.d CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o -o segmentFst -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 20%] Built target segmentFst make -f CMakeFiles/pFst.dir/build.make CMakeFiles/pFst.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/pFst.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/pFst.dir/build.make CMakeFiles/pFst.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 21%] Building CXX object CMakeFiles/pFst.dir/src/pFst.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/pFst.dir/src/pFst.cpp.o -MF CMakeFiles/pFst.dir/src/pFst.cpp.o.d -o CMakeFiles/pFst.dir/src/pFst.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/pFst.cpp [ 21%] Linking CXX executable genotypeSummary /usr/bin/cmake -E cmake_link_script CMakeFiles/genotypeSummary.dir/link.txt --verbose=1 [ 21%] Linking CXX executable popStats /usr/bin/cmake -E cmake_link_script CMakeFiles/popStats.dir/link.txt --verbose=1 [ 21%] Linking CXX executable hapLrt /usr/bin/cmake -E cmake_link_script CMakeFiles/hapLrt.dir/link.txt --verbose=1 [ 21%] Linking CXX executable bFst /usr/bin/cmake -E cmake_link_script CMakeFiles/bFst.dir/link.txt --verbose=1 [ 22%] Linking CXX executable wcFst /usr/bin/cmake -E cmake_link_script CMakeFiles/wcFst.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto 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/build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/smoother.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/smoother.dir/build.make CMakeFiles/smoother.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 23%] Building CXX object CMakeFiles/smoother.dir/src/smoother.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/smoother.dir/src/smoother.cpp.o -MF CMakeFiles/smoother.dir/src/smoother.cpp.o.d -o CMakeFiles/smoother.dir/src/smoother.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/smoother.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dumpContigsFromHeader.dir/link.d CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -o dumpContigsFromHeader -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 23%] Built target dumpContigsFromHeader make -f CMakeFiles/vcfld.dir/build.make CMakeFiles/vcfld.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfld.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfld.dir/build.make CMakeFiles/vcfld.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 23%] Building CXX object CMakeFiles/vcfld.dir/src/vcfld.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfld.dir/src/vcfld.cpp.o -MF CMakeFiles/vcfld.dir/src/vcfld.cpp.o.d -o CMakeFiles/vcfld.dir/src/vcfld.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfld.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfecho.dir/link.d CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -o vcfecho -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 23%] Linking CXX executable pVst /usr/bin/cmake -E cmake_link_script CMakeFiles/pVst.dir/link.txt --verbose=1 [ 23%] Linking CXX executable sequenceDiversity /usr/bin/cmake -E cmake_link_script CMakeFiles/sequenceDiversity.dir/link.txt --verbose=1 [ 23%] Built target vcfecho make -f CMakeFiles/plotHaps.dir/build.make CMakeFiles/plotHaps.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/plotHaps.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/plotHaps.dir/build.make CMakeFiles/plotHaps.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 24%] Building CXX object CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -MF CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o.d -o CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/plotHaps.cpp [ 24%] Linking CXX executable iHS /usr/bin/cmake -E 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'/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 24%] Built target wcFst make -f CMakeFiles/abba-baba.dir/build.make CMakeFiles/abba-baba.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/abba-baba.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/abba-baba.dir/build.make CMakeFiles/abba-baba.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 24%] Building CXX object CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT 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/usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 24%] Built target genotypeSummary make -f CMakeFiles/permuteGPAT++.dir/build.make CMakeFiles/permuteGPAT++.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/permuteGPAT++.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f 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-I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -MF CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o.d -o CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/permuteGPAT++.cpp [ 25%] Linking CXX executable pFst /usr/bin/cmake -E cmake_link_script CMakeFiles/pFst.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/popStats.dir/link.d CMakeFiles/popStats.dir/src/popStats.cpp.o -o popStats -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 25%] Built target popStats make -f CMakeFiles/permuteSmooth.dir/build.make CMakeFiles/permuteSmooth.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/permuteSmooth.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/permuteSmooth.dir/build.make CMakeFiles/permuteSmooth.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bFst.dir/link.d CMakeFiles/bFst.dir/src/bFst.cpp.o -o bFst -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 26%] Building CXX object CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -MF CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o.d -o CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/permuteSmooth.cpp [ 26%] Built target bFst make -f CMakeFiles/normalize-iHS.dir/build.make CMakeFiles/normalize-iHS.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/normalize-iHS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/normalize-iHS.dir/build.make CMakeFiles/normalize-iHS.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 27%] Linking CXX executable vcfld /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfld.dir/link.txt --verbose=1 [ 28%] Building CXX object CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o -MF CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o.d -o CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/normalize-iHS.cpp [ 28%] Linking CXX executable plotHaps /usr/bin/cmake -E cmake_link_script CMakeFiles/plotHaps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/smoother.dir/link.d CMakeFiles/smoother.dir/src/smoother.cpp.o -o smoother -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 28%] Built target smoother make -f CMakeFiles/meltEHH.dir/build.make CMakeFiles/meltEHH.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/meltEHH.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/meltEHH.dir/build.make CMakeFiles/meltEHH.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 29%] Building CXX object CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -MF CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o.d -o CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/meltEHH.cpp [ 29%] Linking CXX executable permuteGPAT++ /usr/bin/cmake -E cmake_link_script CMakeFiles/permuteGPAT++.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/hapLrt.dir/link.d CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -o hapLrt -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 29%] Built target hapLrt make -f CMakeFiles/vcfnullgenofields.dir/build.make CMakeFiles/vcfnullgenofields.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfnullgenofields.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfnullgenofields.dir/build.make CMakeFiles/vcfnullgenofields.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 29%] Building CXX object CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o -MF CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o.d -o CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfnullgenofields.cpp [ 29%] Linking CXX executable abba-baba /usr/bin/cmake -E cmake_link_script CMakeFiles/abba-baba.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sequenceDiversity.dir/link.d CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -o sequenceDiversity -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 29%] Built target sequenceDiversity make -f CMakeFiles/vcfaltcount.dir/build.make CMakeFiles/vcfaltcount.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfaltcount.dir/DependInfo.cmake "--color=" [ 29%] Linking CXX executable permuteSmooth /usr/bin/cmake -E cmake_link_script CMakeFiles/permuteSmooth.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfaltcount.dir/build.make CMakeFiles/vcfaltcount.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/iHS.dir/link.d CMakeFiles/iHS.dir/src/iHS.cpp.o -o iHS -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 30%] Building CXX object CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -MF CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o.d -o CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfaltcount.cpp [ 30%] Built target iHS make -f CMakeFiles/vcfhetcount.dir/build.make CMakeFiles/vcfhetcount.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfhetcount.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfhetcount.dir/build.make CMakeFiles/vcfhetcount.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 30%] Building CXX object CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -MF CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o.d -o CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfhetcount.cpp [ 30%] Linking CXX executable normalize-iHS /usr/bin/cmake -E cmake_link_script CMakeFiles/normalize-iHS.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pVst.dir/link.d CMakeFiles/pVst.dir/src/pVst.cpp.o -o pVst -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 30%] Built target pVst make -f CMakeFiles/vcfhethomratio.dir/build.make CMakeFiles/vcfhethomratio.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfhethomratio.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfhethomratio.dir/build.make CMakeFiles/vcfhethomratio.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 30%] Building CXX object CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -MF CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o.d -o CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfhethomratio.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/permuteGPAT++.dir/link.d CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -o permuteGPAT++ -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 30%] Built target permuteGPAT++ make -f CMakeFiles/vcffilter.dir/build.make CMakeFiles/vcffilter.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcffilter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcffilter.dir/build.make CMakeFiles/vcffilter.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 31%] Building CXX object CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -MF CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o.d -o CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcffilter.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pFst.dir/link.d CMakeFiles/pFst.dir/src/pFst.cpp.o -o pFst -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 31%] Built target pFst make -f CMakeFiles/vcf2tsv.dir/build.make CMakeFiles/vcf2tsv.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcf2tsv.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcf2tsv.dir/build.make CMakeFiles/vcf2tsv.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 32%] Building CXX object CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -MF CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o.d -o CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcf2tsv.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/normalize-iHS.dir/link.d "CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o" -o normalize-iHS -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 32%] Built target normalize-iHS make -f CMakeFiles/vcfgenotypes.dir/build.make CMakeFiles/vcfgenotypes.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfgenotypes.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfgenotypes.dir/build.make CMakeFiles/vcfgenotypes.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 32%] Building CXX object CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -MF CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o.d -o CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfgenotypes.cpp [ 32%] Linking CXX executable meltEHH /usr/bin/cmake -E cmake_link_script CMakeFiles/meltEHH.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/permuteSmooth.dir/link.d CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -o permuteSmooth -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 32%] Linking CXX executable vcfaltcount /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfaltcount.dir/link.txt --verbose=1 [ 32%] Built target permuteSmooth make -f CMakeFiles/vcfannotategenotypes.dir/build.make CMakeFiles/vcfannotategenotypes.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfannotategenotypes.dir/DependInfo.cmake "--color=" /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/abba-baba.dir/link.d "CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o" -o abba-baba -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/plotHaps.dir/link.d CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -o plotHaps -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 33%] Linking CXX executable vcfhetcount /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfhetcount.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfannotategenotypes.dir/build.make CMakeFiles/vcfannotategenotypes.dir/build [ 33%] Built target abba-baba make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfcommonsamples.dir/build.make CMakeFiles/vcfcommonsamples.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 33%] Built target plotHaps cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfcommonsamples.dir/DependInfo.cmake "--color=" make -f CMakeFiles/vcfremovesamples.dir/build.make CMakeFiles/vcfremovesamples.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfremovesamples.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfcommonsamples.dir/build.make CMakeFiles/vcfcommonsamples.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 34%] Building CXX object CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -MF CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o.d -o CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfannotategenotypes.cpp make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfremovesamples.dir/build.make CMakeFiles/vcfremovesamples.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 35%] Building CXX object CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -MF CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o.d -o CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfcommonsamples.cpp [ 35%] Building CXX object CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -MF CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o.d -o CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfremovesamples.cpp [ 36%] Linking CXX executable vcfnullgenofields /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfnullgenofields.dir/link.txt --verbose=1 [ 37%] Linking CXX executable vcfhethomratio /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfhethomratio.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection 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CMakeFiles/vcffilter.dir/link.txt --verbose=1 [ 37%] Building CXX object CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o 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-Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 39%] Built target vcfld make -f CMakeFiles/vcfsamplenames.dir/build.make CMakeFiles/vcfsamplenames.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu 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-I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -MF CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o.d -o CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfgenotypecompare.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfnullgenofields.dir/link.d CMakeFiles/vcfnullgenofields.dir/src/vcfnullgenofields.cpp.o -o vcfnullgenofields -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 40%] Built target vcfnullgenofields make -f CMakeFiles/vcffixup.dir/build.make CMakeFiles/vcffixup.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcffixup.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcffixup.dir/build.make CMakeFiles/vcffixup.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 41%] Building CXX object CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -MF CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o.d -o CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcffixup.cpp [ 41%] Linking CXX executable vcfannotategenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfannotategenotypes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfcommonsamples.dir/link.d CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -o vcfcommonsamples -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 41%] Built target vcfcommonsamples make -f CMakeFiles/vcfclassify.dir/build.make CMakeFiles/vcfclassify.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfclassify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfclassify.dir/build.make CMakeFiles/vcfclassify.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 42%] Building CXX object CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -MF CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o.d -o 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'/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target vcfhethomratio make -f CMakeFiles/vcfsamplediff.dir/build.make CMakeFiles/vcfsamplediff.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfsamplediff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfsamplediff.dir/build.make CMakeFiles/vcfsamplediff.dir/build make[4]: Entering directory 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libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 44%] Linking CXX executable vcfsamplenames /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsamplenames.dir/link.txt --verbose=1 [ 44%] Built target vcfgenotypes make -f CMakeFiles/vcfremoveaberrantgenotypes.dir/build.make CMakeFiles/vcfremoveaberrantgenotypes.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu 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'/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfremovesamples.dir/link.d CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -o vcfremovesamples -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfremoveaberrantgenotypes.dir/build.make CMakeFiles/vcfremoveaberrantgenotypes.dir/build [ 44%] Built target meltEHH make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfrandom.dir/build.make CMakeFiles/vcfrandom.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfrandom.dir/DependInfo.cmake "--color=" [ 44%] Built target vcfremovesamples make -f CMakeFiles/vcfflatten.dir/build.make CMakeFiles/vcfflatten.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfflatten.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfrandom.dir/build.make CMakeFiles/vcfrandom.dir/build [ 44%] Building CXX object CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -MF CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o.d -o CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfremoveaberrantgenotypes.cpp [ 44%] Building CXX object CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -MF CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o.d -o CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfrandom.cpp make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfflatten.dir/build.make CMakeFiles/vcfflatten.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -MF CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o.d -o CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfflatten.cpp [ 45%] Linking CXX executable vcfgenotypecompare /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenotypecompare.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcf2tsv.dir/link.d CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -o vcf2tsv -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target vcf2tsv make -f CMakeFiles/vcfprimers.dir/build.make CMakeFiles/vcfprimers.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfprimers.dir/DependInfo.cmake "--color=" /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfsamplenames.dir/link.d CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -o vcfsamplenames -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfprimers.dir/build.make CMakeFiles/vcfprimers.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target vcfsamplenames make -f CMakeFiles/vcfnumalt.dir/build.make CMakeFiles/vcfnumalt.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfnumalt.dir/DependInfo.cmake "--color=" [ 45%] Building CXX object CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -MF CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o.d -o CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfprimers.cpp make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfnumalt.dir/build.make CMakeFiles/vcfnumalt.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -MF CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o.d -o CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfnumalt.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfkeepsamples.dir/link.d CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -o vcfkeepsamples -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target vcfkeepsamples make -f CMakeFiles/vcfintersect.dir/build.make CMakeFiles/vcfintersect.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfintersect.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfintersect.dir/build.make CMakeFiles/vcfintersect.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -MF CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o.d -o CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfintersect.cpp [ 45%] Linking CXX executable vcffixup /usr/bin/cmake -E cmake_link_script CMakeFiles/vcffixup.dir/link.txt --verbose=1 [ 45%] Linking CXX executable vcfclassify /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfclassify.dir/link.txt --verbose=1 [ 46%] Linking CXX executable vcfremoveaberrantgenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremoveaberrantgenotypes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcffilter.dir/link.d CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -o vcffilter -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 47%] Linking CXX executable vcfsamplediff /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsamplediff.dir/link.txt --verbose=1 [ 47%] Built target vcffilter make -f CMakeFiles/vcfannotate.dir/build.make CMakeFiles/vcfannotate.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfannotate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfannotate.dir/build.make CMakeFiles/vcfannotate.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 48%] Building CXX object CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -MF CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o.d -o CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfannotate.cpp [ 49%] Linking CXX executable vcfrandom /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfrandom.dir/link.txt --verbose=1 [ 50%] Linking CXX executable vcfprimers /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfprimers.dir/link.txt --verbose=1 [ 50%] Linking CXX executable vcfflatten /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfflatten.dir/link.txt --verbose=1 [ 51%] Linking CXX executable vcfnumalt /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfnumalt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfclassify.dir/link.d CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -o vcfclassify -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 51%] Built target vcfclassify make -f CMakeFiles/vcfoverlay.dir/build.make CMakeFiles/vcfoverlay.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfoverlay.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfoverlay.dir/build.make CMakeFiles/vcfoverlay.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 51%] Building CXX object CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -MF CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o.d -o CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfoverlay.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfprimers.dir/link.d CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -o vcfprimers -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 51%] Built target vcfprimers make -f CMakeFiles/vcfaddinfo.dir/build.make CMakeFiles/vcfaddinfo.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfaddinfo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfaddinfo.dir/build.make CMakeFiles/vcfaddinfo.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 52%] Building CXX object CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -MF CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o.d -o CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfaddinfo.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfremoveaberrantgenotypes.dir/link.d CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -o vcfremoveaberrantgenotypes -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 52%] Built target vcfremoveaberrantgenotypes make -f CMakeFiles/vcfkeepinfo.dir/build.make CMakeFiles/vcfkeepinfo.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfkeepinfo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfkeepinfo.dir/build.make CMakeFiles/vcfkeepinfo.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 52%] Building CXX object CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -MF CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o.d -o CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfkeepinfo.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcffixup.dir/link.d CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -o vcffixup -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 52%] Built target vcffixup make -f CMakeFiles/vcfkeepgeno.dir/build.make CMakeFiles/vcfkeepgeno.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfkeepgeno.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfkeepgeno.dir/build.make CMakeFiles/vcfkeepgeno.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 52%] Building CXX object CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -MF CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o.d -o CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfkeepgeno.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfsamplediff.dir/link.d CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -o vcfsamplediff -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 52%] Built target vcfsamplediff make -f CMakeFiles/vcfafpath.dir/build.make CMakeFiles/vcfafpath.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfafpath.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfafpath.dir/build.make CMakeFiles/vcfafpath.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -MF CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o.d -o CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfafpath.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfnumalt.dir/link.d CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -o vcfnumalt -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 53%] Built target vcfnumalt make -f CMakeFiles/vcfcountalleles.dir/build.make CMakeFiles/vcfcountalleles.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfcountalleles.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfcountalleles.dir/build.make CMakeFiles/vcfcountalleles.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 54%] Building CXX object CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -MF CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o.d -o CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfcountalleles.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfannotategenotypes.dir/link.d CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -o vcfannotategenotypes -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 54%] Built target vcfannotategenotypes make -f CMakeFiles/vcflength.dir/build.make CMakeFiles/vcflength.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcflength.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcflength.dir/build.make CMakeFiles/vcflength.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 54%] Building CXX object CMakeFiles/vcflength.dir/src/vcflength.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcflength.dir/src/vcflength.cpp.o -MF CMakeFiles/vcflength.dir/src/vcflength.cpp.o.d -o CMakeFiles/vcflength.dir/src/vcflength.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcflength.cpp [ 54%] Linking CXX executable vcfannotate /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfannotate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfrandom.dir/link.d CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -o vcfrandom -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 54%] Built target vcfrandom make -f CMakeFiles/vcfdistance.dir/build.make CMakeFiles/vcfdistance.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfdistance.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfdistance.dir/build.make CMakeFiles/vcfdistance.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 55%] Building CXX object CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include 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directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 56%] Built target vcfflatten make -f CMakeFiles/vcfrandomsample.dir/build.make CMakeFiles/vcfrandomsample.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfrandomsample.dir/DependInfo.cmake "--color=" [ 57%] Linking CXX executable vcfkeepinfo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepinfo.dir/link.txt --verbose=1 [ 58%] Linking CXX executable vcfkeepgeno /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepgeno.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfrandomsample.dir/build.make CMakeFiles/vcfrandomsample.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 58%] Building CXX object CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -MF CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o.d -o CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfrandomsample.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfgenotypecompare.dir/link.d CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -o vcfgenotypecompare -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 58%] Built target vcfgenotypecompare make -f CMakeFiles/vcfentropy.dir/build.make CMakeFiles/vcfentropy.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu 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/usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -MF CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o.d -o CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfentropy.cpp [ 60%] Linking CXX executable vcfintersect /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfintersect.dir/link.txt --verbose=1 [ 60%] Linking CXX executable vcfafpath /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfafpath.dir/link.txt --verbose=1 [ 60%] Linking CXX executable vcfcountalleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcountalleles.dir/link.txt --verbose=1 [ 61%] Linking CXX executable vcflength /usr/bin/cmake -E cmake_link_script CMakeFiles/vcflength.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfkeepinfo.dir/link.d CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -o vcfkeepinfo -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 61%] Built target vcfkeepinfo [ 61%] Linking CXX executable vcfdistance /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfdistance.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfkeepgeno.dir/link.d CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -o vcfkeepgeno -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 61%] Built target vcfkeepgeno make -f CMakeFiles/vcfglxgt.dir/build.make CMakeFiles/vcfglxgt.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfglxgt.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfglxgt.dir/build.make CMakeFiles/vcfglxgt.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfaddinfo.dir/link.d CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -o vcfaddinfo -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 61%] Building CXX object CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -MF CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o.d -o CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfglxgt.cpp [ 61%] Built target vcfaddinfo [ 61%] Linking CXX executable vcfentropy /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfentropy.dir/link.txt --verbose=1 make -f CMakeFiles/vcfcheck.dir/build.make CMakeFiles/vcfcheck.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfcheck.dir/DependInfo.cmake "--color=" /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong 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directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 61%] Built target vcfcountalleles make -f CMakeFiles/vcfstreamsort.dir/build.make CMakeFiles/vcfstreamsort.dir/depend [ 62%] Building CXX object CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -MF CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o.d -o CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfcheck.cpp make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfstreamsort.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfstreamsort.dir/build.make CMakeFiles/vcfstreamsort.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 62%] Building CXX object CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -MF CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o.d -o CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfstreamsort.cpp [ 63%] Linking CXX executable vcfrandomsample /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfrandomsample.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfafpath.dir/link.d CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -o vcfafpath -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 63%] Built target vcfafpath make -f CMakeFiles/vcfuniq.dir/build.make CMakeFiles/vcfuniq.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu 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/usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -MF CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o.d -o CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfuniq.cpp make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfuniqalleles.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfuniqalleles.dir/build.make CMakeFiles/vcfuniqalleles.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 63%] Building CXX object CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -MF CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o.d -o CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfuniqalleles.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfoverlay.dir/link.d CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -o vcfoverlay -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 63%] Built target vcfoverlay make -f CMakeFiles/vcfremap.dir/build.make CMakeFiles/vcfremap.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfremap.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfremap.dir/build.make CMakeFiles/vcfremap.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 63%] Building CXX object CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -MF CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o.d -o CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfremap.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcflength.dir/link.d CMakeFiles/vcflength.dir/src/vcflength.cpp.o -o vcflength -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 63%] Built target vcflength make -f CMakeFiles/vcf2fasta.dir/build.make CMakeFiles/vcf2fasta.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcf2fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcf2fasta.dir/build.make CMakeFiles/vcf2fasta.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfdistance.dir/link.d CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -o vcfdistance -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -MF CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o.d -o CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcf2fasta.cpp [ 64%] Built target vcfdistance make -f CMakeFiles/vcfsitesummarize.dir/build.make CMakeFiles/vcfsitesummarize.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfsitesummarize.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfsitesummarize.dir/build.make CMakeFiles/vcfsitesummarize.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -MF CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o.d -o CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfsitesummarize.cpp [ 64%] Linking CXX executable vcfcheck /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcheck.dir/link.txt --verbose=1 [ 65%] Linking CXX executable vcfglxgt /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfglxgt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfrandomsample.dir/link.d CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -o vcfrandomsample -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 65%] Built target vcfrandomsample make -f CMakeFiles/vcfbreakmulti.dir/build.make CMakeFiles/vcfbreakmulti.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfbreakmulti.dir/DependInfo.cmake "--color=" [ 66%] Linking CXX executable vcfuniq /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfuniq.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfbreakmulti.dir/build.make CMakeFiles/vcfbreakmulti.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 67%] Building CXX object CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -MF CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o.d -o CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfbreakmulti.cpp [ 68%] Linking CXX executable vcfstreamsort /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfstreamsort.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfentropy.dir/link.d CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -o vcfentropy -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 68%] Built target vcfentropy make -f CMakeFiles/vcfevenregions.dir/build.make CMakeFiles/vcfevenregions.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfevenregions.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfevenregions.dir/build.make CMakeFiles/vcfevenregions.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 69%] Building CXX object CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -MF CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o.d -o CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfevenregions.cpp [ 70%] Linking CXX executable vcfuniqalleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfuniqalleles.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfcheck.dir/link.d CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -o vcfcheck -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 70%] Built target vcfcheck make -f CMakeFiles/vcfcat.dir/build.make CMakeFiles/vcfcat.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfcat.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfcat.dir/build.make CMakeFiles/vcfcat.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 71%] Building CXX object CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -MF CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o.d -o CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfcat.cpp [ 72%] Linking CXX executable vcfsitesummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsitesummarize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfannotate.dir/link.d CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -o vcfannotate -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 72%] Built target vcfannotate make -f CMakeFiles/vcfgenosummarize.dir/build.make CMakeFiles/vcfgenosummarize.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfgenosummarize.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfgenosummarize.dir/build.make CMakeFiles/vcfgenosummarize.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 73%] Building CXX object CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -MF CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o.d -o CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfgenosummarize.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfuniq.dir/link.d CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -o vcfuniq -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 73%] Built target vcfuniq make -f CMakeFiles/vcfgenosamplenames.dir/build.make CMakeFiles/vcfgenosamplenames.dir/depend [ 73%] Linking CXX executable vcf2fasta make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfgenosamplenames.dir/DependInfo.cmake "--color=" /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2fasta.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfgenosamplenames.dir/build.make CMakeFiles/vcfgenosamplenames.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 74%] Building CXX object CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -MF CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o.d -o CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -c 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make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 75%] Linking CXX executable vcfremap /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremap.dir/link.txt --verbose=1 [ 75%] Built target vcfglxgt make -f CMakeFiles/vcfgeno2haplo.dir/build.make CMakeFiles/vcfgeno2haplo.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfgeno2haplo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfgeno2haplo.dir/build.make CMakeFiles/vcfgeno2haplo.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfuniqalleles.dir/link.d CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -o vcfuniqalleles -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 76%] Building CXX object CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -MF CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o.d -o CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfgeno2haplo.cpp [ 76%] Built target vcfuniqalleles make -f CMakeFiles/vcfleftalign.dir/build.make CMakeFiles/vcfleftalign.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu 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-O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -MF CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o.d -o CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfleftalign.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfintersect.dir/link.d CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -o vcfintersect -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 76%] Built target vcfintersect make -f CMakeFiles/vcfcombine.dir/build.make CMakeFiles/vcfcombine.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfcombine.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfcombine.dir/build.make CMakeFiles/vcfcombine.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 76%] Linking CXX executable vcfevenregions [ 77%] Building CXX object CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -MF CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o.d -o CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfcombine.cpp /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfevenregions.dir/link.txt --verbose=1 [ 77%] Linking CXX executable vcfcat /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfsitesummarize.dir/link.d CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -o vcfsitesummarize -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target vcfsitesummarize make -f CMakeFiles/vcfgeno2alleles.dir/build.make CMakeFiles/vcfgeno2alleles.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfgeno2alleles.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfgeno2alleles.dir/build.make CMakeFiles/vcfgeno2alleles.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 78%] Building CXX object CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -MF CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o.d -o CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfgeno2alleles.cpp [ 78%] Linking CXX executable vcfgenosummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenosummarize.dir/link.txt --verbose=1 [ 79%] Linking CXX executable vcfleftalign /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfleftalign.dir/link.txt --verbose=1 [ 79%] Linking CXX executable vcfgenosamplenames /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenosamplenames.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfstreamsort.dir/link.d CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -o vcfstreamsort -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target vcfstreamsort make -f CMakeFiles/vcfindex.dir/build.make CMakeFiles/vcfindex.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfindex.dir/build.make CMakeFiles/vcfindex.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 79%] Building CXX object CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -MF CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o.d -o CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfindex.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfevenregions.dir/link.d CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -o vcfevenregions -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target vcfevenregions make -f CMakeFiles/vcf2dag.dir/build.make CMakeFiles/vcf2dag.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcf2dag.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcf2dag.dir/build.make CMakeFiles/vcf2dag.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 80%] Building CXX object CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -MF CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o.d -o CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcf2dag.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfbreakmulti.dir/link.d CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -o vcfbreakmulti -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target vcfbreakmulti make -f CMakeFiles/vcfsample2info.dir/build.make CMakeFiles/vcfsample2info.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfsample2info.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfsample2info.dir/build.make CMakeFiles/vcfsample2info.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 80%] Building CXX object CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -MF CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o.d -o CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfsample2info.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcf2fasta.dir/link.d CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -o vcf2fasta -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfcat.dir/link.d CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -o vcfcat -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 [ 80%] Built target vcf2fasta make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfqual2info.dir/build.make CMakeFiles/vcfqual2info.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfqual2info.dir/DependInfo.cmake "--color=" [ 80%] Built target vcfcat make -f CMakeFiles/vcfinfo2qual.dir/build.make CMakeFiles/vcfinfo2qual.dir/depend make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfqual2info.dir/build.make CMakeFiles/vcfqual2info.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfinfo2qual.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfinfo2qual.dir/build.make CMakeFiles/vcfinfo2qual.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 80%] Building CXX object CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -MF CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o.d -o CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfqual2info.cpp [ 80%] Building CXX object CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -MF CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o.d -o CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfinfo2qual.cpp [ 80%] Linking CXX executable vcfgeno2alleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgeno2alleles.dir/link.txt --verbose=1 [ 80%] Linking CXX executable vcfcombine /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcombine.dir/link.txt --verbose=1 [ 80%] Linking CXX executable vcfgeno2haplo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgeno2haplo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfgenosamplenames.dir/link.d CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -o vcfgenosamplenames -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target vcfgenosamplenames make -f CMakeFiles/vcfglbound.dir/build.make CMakeFiles/vcfglbound.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfglbound.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfglbound.dir/build.make CMakeFiles/vcfglbound.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 80%] Building CXX object CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -MF CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o.d -o CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfglbound.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfgenosummarize.dir/link.d CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -o vcfgenosummarize -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target vcfgenosummarize make -f CMakeFiles/vcfinfosummarize.dir/build.make CMakeFiles/vcfinfosummarize.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfinfosummarize.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfinfosummarize.dir/build.make CMakeFiles/vcfinfosummarize.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 81%] Linking CXX executable vcfindex /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfindex.dir/link.txt --verbose=1 [ 81%] Building CXX object CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -MF CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o.d -o CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfinfosummarize.cpp [ 82%] Linking CXX executable vcfinfo2qual /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfinfo2qual.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfgeno2alleles.dir/link.d CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -o vcfgeno2alleles -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 83%] Linking CXX executable vcfsample2info /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsample2info.dir/link.txt --verbose=1 [ 83%] Built target vcfgeno2alleles make -f CMakeFiles/vcfcreatemulti.dir/build.make CMakeFiles/vcfcreatemulti.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfcreatemulti.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfremap.dir/link.d CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -o vcfremap -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make -f CMakeFiles/vcfcreatemulti.dir/build.make CMakeFiles/vcfcreatemulti.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 83%] Linking CXX executable vcf2dag /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2dag.dir/link.txt --verbose=1 [ 84%] Building CXX object CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -MF CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o.d -o CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfcreatemulti.cpp [ 84%] Built target vcfremap make -f CMakeFiles/vcfallelicprimitives.dir/build.make CMakeFiles/vcfallelicprimitives.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfallelicprimitives.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfallelicprimitives.dir/build.make CMakeFiles/vcfallelicprimitives.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 85%] Building CXX object CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -MF CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o.d -o CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfallelicprimitives.cpp [ 86%] Linking CXX executable vcfqual2info /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfqual2info.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfleftalign.dir/link.d CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -o vcfleftalign -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target vcfleftalign [ 86%] Building CXX object CMakeFiles/vcfallelicprimitives.dir/src/legacy.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfallelicprimitives.dir/src/legacy.cpp.o -MF CMakeFiles/vcfallelicprimitives.dir/src/legacy.cpp.o.d -o CMakeFiles/vcfallelicprimitives.dir/src/legacy.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/legacy.cpp [ 87%] Linking CXX executable vcfglbound /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfglbound.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfinfo2qual.dir/link.d CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -o vcfinfo2qual -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 87%] Built target vcfinfo2qual [ 88%] Linking CXX executable vcfinfosummarize [ 89%] Building CXX object CMakeFiles/vcfallelicprimitives.dir/src/vcf-wfa.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfallelicprimitives.dir/src/vcf-wfa.cpp.o -MF CMakeFiles/vcfallelicprimitives.dir/src/vcf-wfa.cpp.o.d -o CMakeFiles/vcfallelicprimitives.dir/src/vcf-wfa.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcf-wfa.cpp /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfinfosummarize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfindex.dir/link.d CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -o vcfindex -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 89%] Built target vcfindex make -f CMakeFiles/vcfcleancomplex.dir/build.make CMakeFiles/vcfcleancomplex.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfcleancomplex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfcleancomplex.dir/build.make CMakeFiles/vcfcleancomplex.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 90%] Building CXX object CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -MF CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o.d -o CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfcleancomplex.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfsample2info.dir/link.d CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -o vcfsample2info -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 90%] Built target vcfsample2info make -f CMakeFiles/vcfparsealts.dir/build.make CMakeFiles/vcfparsealts.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfparsealts.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfparsealts.dir/build.make CMakeFiles/vcfparsealts.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfqual2info.dir/link.d CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -o vcfqual2info -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 90%] Building CXX object CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -MF CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o.d -o CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfparsealts.cpp [ 90%] Built target vcfqual2info [ 91%] Building CXX object CMakeFiles/vcfparsealts.dir/src/legacy.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfparsealts.dir/src/legacy.cpp.o -MF CMakeFiles/vcfparsealts.dir/src/legacy.cpp.o.d -o CMakeFiles/vcfparsealts.dir/src/legacy.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/legacy.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcf2dag.dir/link.d CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -o vcf2dag -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 91%] Linking CXX executable vcfcreatemulti /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcreatemulti.dir/link.txt --verbose=1 [ 91%] Built target vcf2dag [ 91%] Building CXX object CMakeFiles/vcfparsealts.dir/src/vcf-wfa.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfparsealts.dir/src/vcf-wfa.cpp.o -MF CMakeFiles/vcfparsealts.dir/src/vcf-wfa.cpp.o.d -o CMakeFiles/vcfparsealts.dir/src/vcf-wfa.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcf-wfa.cpp [ 91%] Building CXX object CMakeFiles/vcfcleancomplex.dir/src/legacy.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcleancomplex.dir/src/legacy.cpp.o -MF CMakeFiles/vcfcleancomplex.dir/src/legacy.cpp.o.d -o CMakeFiles/vcfcleancomplex.dir/src/legacy.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/legacy.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfglbound.dir/link.d CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -o vcfglbound -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 91%] Built target vcfglbound make -f CMakeFiles/vcfroc.dir/build.make CMakeFiles/vcfroc.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfroc.dir/DependInfo.cmake "--color=" /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfcombine.dir/link.d CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -o vcfcombine -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfroc.dir/build.make CMakeFiles/vcfroc.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 91%] Built target vcfcombine make -f CMakeFiles/vcfstats.dir/build.make CMakeFiles/vcfstats.dir/depend [ 91%] Building CXX object CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfstats.dir/DependInfo.cmake "--color=" /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -MF CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o.d -o CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfroc.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfinfosummarize.dir/link.d CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -o vcfinfosummarize -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 92%] Building CXX object CMakeFiles/vcfcleancomplex.dir/src/vcf-wfa.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfcleancomplex.dir/src/vcf-wfa.cpp.o -MF CMakeFiles/vcfcleancomplex.dir/src/vcf-wfa.cpp.o.d -o CMakeFiles/vcfcleancomplex.dir/src/vcf-wfa.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcf-wfa.cpp make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfstats.dir/build.make CMakeFiles/vcfstats.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 92%] Built target vcfinfosummarize make -f CMakeFiles/vcfwave.dir/build.make CMakeFiles/vcfwave.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/vcfwave.dir/DependInfo.cmake "--color=" [ 92%] Building CXX object CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -MF CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o.d -o CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfstats.cpp make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/vcfwave.dir/build.make CMakeFiles/vcfwave.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 92%] Building CXX object CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o -MF CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o.d -o CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcfwave.cpp [ 93%] Building CXX object CMakeFiles/vcfwave.dir/src/legacy.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfwave.dir/src/legacy.cpp.o -MF CMakeFiles/vcfwave.dir/src/legacy.cpp.o.d -o CMakeFiles/vcfwave.dir/src/legacy.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/legacy.cpp [ 94%] Building CXX object CMakeFiles/vcfroc.dir/src/legacy.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree 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-I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfstats.dir/src/legacy.cpp.o -MF CMakeFiles/vcfstats.dir/src/legacy.cpp.o.d -o CMakeFiles/vcfstats.dir/src/legacy.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/legacy.cpp /usr/bin/c++ -g -O2 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CMakeFiles/pyvcflib.dir/depend make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles/pyvcflib.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/pyvcflib.dir/build.make CMakeFiles/pyvcflib.dir/build make[4]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 96%] Building CXX object CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -Dpyvcflib_EXPORTS -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/python3.13 -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIC -fvisibility=hidden -MD -MT CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o -MF CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o.d -o CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/pythonffi.cpp [ 96%] Linking CXX executable vcfallelicprimitives /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfallelicprimitives.dir/link.txt --verbose=1 [ 96%] Building CXX object CMakeFiles/vcfroc.dir/src/vcf-wfa.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfroc.dir/src/vcf-wfa.cpp.o -MF CMakeFiles/vcfroc.dir/src/vcf-wfa.cpp.o.d -o CMakeFiles/vcfroc.dir/src/vcf-wfa.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcf-wfa.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfcreatemulti.dir/link.d CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -o vcfcreatemulti -Wl,-rpath,"\$ORIGIN:" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target vcfcreatemulti [ 96%] Building CXX object CMakeFiles/vcfwave.dir/src/vcf-wfa.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfwave.dir/src/vcf-wfa.cpp.o -MF CMakeFiles/vcfwave.dir/src/vcf-wfa.cpp.o.d -o CMakeFiles/vcfwave.dir/src/vcf-wfa.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcf-wfa.cpp [ 97%] Linking CXX executable vcfparsealts /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfparsealts.dir/link.txt --verbose=1 [ 97%] Building CXX object CMakeFiles/vcfstats.dir/src/vcf-wfa.cpp.o /usr/bin/c++ -DNO_ZIG=1 -DVCFLIB_VERSION=\"1.0.10\" -DVERSION=\"1.0.10\" -I/build/reproducible-path/libvcflib-1.0.12+dfsg/include -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/intervaltree -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/filevercmp -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/c-progress-bar -I/build/reproducible-path/libvcflib-1.0.12+dfsg/contrib/tabixpp -I/include/wfa2lib -I/usr/include/wfa2lib -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -std=gnu++17 -flto=auto -fno-fat-lto-objects -fPIE -MD -MT CMakeFiles/vcfstats.dir/src/vcf-wfa.cpp.o -MF CMakeFiles/vcfstats.dir/src/vcf-wfa.cpp.o.d -o CMakeFiles/vcfstats.dir/src/vcf-wfa.cpp.o -c /build/reproducible-path/libvcflib-1.0.12+dfsg/src/vcf-wfa.cpp [ 97%] Linking CXX executable vcfcleancomplex /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcleancomplex.dir/link.txt --verbose=1 [ 98%] Linking CXX executable vcfroc /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfroc.dir/link.txt --verbose=1 [ 99%] Linking CXX executable vcfstats /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfstats.dir/link.txt --verbose=1 [100%] Linking CXX executable vcfwave /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfwave.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfallelicprimitives.dir/link.d CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o CMakeFiles/vcfallelicprimitives.dir/src/legacy.cpp.o "CMakeFiles/vcfallelicprimitives.dir/src/vcf-wfa.cpp.o" -o vcfallelicprimitives -Wl,-rpath,"\$ORIGIN" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so /usr/lib/aarch64-linux-gnu/libwfa2.so /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [100%] Built target vcfallelicprimitives /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfparsealts.dir/link.d CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o CMakeFiles/vcfparsealts.dir/src/legacy.cpp.o "CMakeFiles/vcfparsealts.dir/src/vcf-wfa.cpp.o" -o vcfparsealts -Wl,-rpath,"\$ORIGIN" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so /usr/lib/aarch64-linux-gnu/libwfa2.so /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [100%] Built target vcfparsealts /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfroc.dir/link.d CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o CMakeFiles/vcfroc.dir/src/legacy.cpp.o "CMakeFiles/vcfroc.dir/src/vcf-wfa.cpp.o" -o vcfroc -Wl,-rpath,"\$ORIGIN" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so /usr/lib/aarch64-linux-gnu/libwfa2.so /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfcleancomplex.dir/link.d CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o CMakeFiles/vcfcleancomplex.dir/src/legacy.cpp.o "CMakeFiles/vcfcleancomplex.dir/src/vcf-wfa.cpp.o" -o vcfcleancomplex -Wl,-rpath,"\$ORIGIN" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so /usr/lib/aarch64-linux-gnu/libwfa2.so /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [100%] Built target vcfroc [100%] Built target vcfcleancomplex [100%] Linking CXX shared module pyvcflib.cpython-313-aarch64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/pyvcflib.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfwave.dir/link.d CMakeFiles/vcfwave.dir/src/vcfwave.cpp.o CMakeFiles/vcfwave.dir/src/legacy.cpp.o "CMakeFiles/vcfwave.dir/src/vcf-wfa.cpp.o" -o vcfwave -Wl,-rpath,"\$ORIGIN" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so /usr/lib/aarch64-linux-gnu/libwfa2.so /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [100%] Built target vcfwave /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vcfstats.dir/link.d CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o CMakeFiles/vcfstats.dir/src/legacy.cpp.o "CMakeFiles/vcfstats.dir/src/vcf-wfa.cpp.o" -o vcfstats -Wl,-rpath,"\$ORIGIN" -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so libvcflib.so.2 -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so /usr/lib/aarch64-linux-gnu/libwfa2.so /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [100%] Built target vcfstats /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libhts.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libbz2.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libhts.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libwfa2.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libsmithwaterman.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libdisorder.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libfastahack.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libtabixpp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libwfa2.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libvcflib-1.0.12+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr/include -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/pyvcflib.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -o pyvcflib.cpython-313-aarch64-linux-gnu.so CMakeFiles/pyvcflib.dir/src/pythonffi.cpp.o -Wl,-rpath,"\$ORIGIN:" libvcflib.so.2 -lhts /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libhts.so /usr/lib/aarch64-linux-gnu/libwfa2.so /usr/lib/aarch64-linux-gnu/libsmithwaterman.so /usr/lib/aarch64-linux-gnu/libdisorder.so /usr/lib/aarch64-linux-gnu/libfastahack.so -ltabixpp -lwfa2 make[4]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' [100%] Built target pyvcflib make[3]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' markdown README.md > README.html make[1]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' cp obj-aarch64-linux-gnu/CTestTestfile.cmake test/ ln -sf obj-aarch64-linux-gnu/ build cd test && ctest . Test project /build/reproducible-path/libvcflib-1.0.12+dfsg/test Start 1: realign 1/9 Test #1: realign .......................... Passed 0.10 sec Start 2: pyvcflib 2/9 Test #2: pyvcflib ......................... Passed 0.12 sec Start 3: vcflib-api 3/9 Test #3: vcflib-api ....................... Passed 0.11 sec Start 4: vcf2tsv 4/9 Test #4: vcf2tsv .......................... Passed 0.10 sec Start 5: vcfallelicprimitives 5/9 Test #5: vcfallelicprimitives ............. Passed 0.82 sec Start 6: vcfwave 6/9 Test #6: vcfwave .......................... Passed 0.48 sec Start 7: vcffilter 7/9 Test #7: vcffilter ........................ Passed 0.20 sec Start 8: vcfnulldotslashdot 8/9 Test #8: vcfnulldotslashdot ............... Passed 0.12 sec Start 9: doc/vcfintersect 9/9 Test #9: doc/vcfintersect ................. Passed 0.10 sec 100% tests passed, 0 tests failed out of 9 Total Test time (real) = 2.16 sec cd .. && rm -f build make[1]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/libvcflib-1.0.12\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libvcflib-1.0.12+dfsg -B/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfecho -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfecho" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/dumpContigsFromHeader -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/dumpContigsFromHeader" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/bFst -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/bFst" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/pVst -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/pVst" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/hapLrt -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/hapLrt" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/popStats -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/popStats" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/wcFst -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/wcFst" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/iHS -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/iHS" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/segmentFst -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/segmentFst" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/segmentIhs -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/segmentIhs" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/genotypeSummary -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/genotypeSummary" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/sequenceDiversity -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/sequenceDiversity" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/pFst -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/pFst" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/smoother -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/smoother" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfld -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfld" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/plotHaps -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/plotHaps" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/abba-baba -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/abba-baba" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/permuteGPAT++ -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/permuteGPAT++" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/permuteSmooth -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/permuteSmooth" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/normalize-iHS -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/normalize-iHS" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/meltEHH -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/meltEHH" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfnullgenofields -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfnullgenofields" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfaltcount -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfaltcount" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfhetcount -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfhetcount" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfhethomratio -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfhethomratio" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcffilter -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcffilter" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcf2tsv -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcf2tsv" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfgenotypes -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfgenotypes" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfannotategenotypes -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfannotategenotypes" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfcommonsamples -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfcommonsamples" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfremovesamples -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfremovesamples" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfkeepsamples -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfkeepsamples" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfsamplenames -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfsamplenames" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfgenotypecompare -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfgenotypecompare" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcffixup -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcffixup" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfclassify -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfclassify" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfsamplediff -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfsamplediff" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfremoveaberrantgenotypes -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfremoveaberrantgenotypes" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfrandom -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfrandom" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfflatten -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfflatten" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfprimers -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfprimers" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfnumalt -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfnumalt" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfintersect -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfintersect" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfannotate -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfannotate" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfoverlay -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfoverlay" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfaddinfo -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfaddinfo" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfkeepinfo -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfkeepinfo" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfkeepgeno -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfkeepgeno" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfafpath -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfafpath" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfcountalleles -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfcountalleles" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcflength -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcflength" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfdistance -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfdistance" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfrandomsample -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfrandomsample" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfentropy -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfentropy" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfglxgt -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfglxgt" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfcheck -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfcheck" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfstreamsort -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfstreamsort" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfuniq -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfuniq" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfuniqalleles -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfuniqalleles" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfremap -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfremap" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcf2fasta -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcf2fasta" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfsitesummarize -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfsitesummarize" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfbreakmulti -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfbreakmulti" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfevenregions -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfevenregions" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfcat -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfcat" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfgenosummarize -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfgenosummarize" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfgenosamplenames -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfgenosamplenames" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfgeno2haplo -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfgeno2haplo" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfleftalign -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfleftalign" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfcombine -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfcombine" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfgeno2alleles -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfgeno2alleles" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfindex -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfindex" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcf2dag -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcf2dag" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfsample2info -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfsample2info" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfqual2info -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfqual2info" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfinfo2qual -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfinfo2qual" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfglbound -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfglbound" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfinfosummarize -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfinfosummarize" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfcreatemulti -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfcreatemulti" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/bed2region -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/bgziptabix -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcf2bed.py -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcf2sqlite.py -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfbiallelic -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfclearid -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfclearinfo -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfcomplex -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcffirstheader -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfgtcompare.sh -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfindelproximity -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfindels -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfjoincalls -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfmultiallelic -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfmultiway -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfmultiwayscripts -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfnobiallelicsnps -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfnoindels -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfnosnps -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfnulldotslashdot -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfplotaltdiscrepancy.r -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfplotaltdiscrepancy.sh -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfplotsitediscrepancy.r -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfplottstv.sh -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfprintaltdiscrepancy.r -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfprintaltdiscrepancy.sh -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfqualfilter -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfregionreduce -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfregionreduce_and_cut -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfregionreduce_pipe -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfregionreduce_uncompressed -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfremovenonATGC -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfsnps -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfsort -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcf_strip_extra_headers -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/bin/vcfvarstats -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pyvcflib.cpython-313-aarch64-linux-gnu.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pyvcflib.cpython-313-aarch64-linux-gnu.so" to "" -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libvcflib.so.2 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libvcflib.so -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/filevercmp.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/IntervalTree.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/catch.hpp -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/BedReader.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/LeftAlign.hpp -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/Variant.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/allele.hpp -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/canonicalize.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/cdflib.hpp -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/cigar.hpp -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/convert.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/gpatInfo.hpp -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/join.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/legacy.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/makeUnique.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/mt19937ar.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/multichoose.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/murmur3.hpp -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/pdflib.hpp -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/rkmh.hpp -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/rnglib.hpp -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/split.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/var.hpp -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/vcf-c-api.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/include/vcflib/vcf-wfa.h -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/wcFst.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfwave.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfuniqalleles.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfuniq.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfstreamsort.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfstats.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfsitesummarize.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfsamplenames.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfsamplediff.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfsample2info.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfroc.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfremovesamples.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfremoveaberrantgenotypes.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfremap.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfrandomsample.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfrandom.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfqual2info.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfprimers.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfparsealts.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfoverlay.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfnumalt.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfnullgenofields.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfnulldotslashdot.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcflib.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcflib-api.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcflength.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfleftalign.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfld.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfkeepsamples.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfkeepinfo.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfkeepgeno.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfintersect.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfinfosummarize.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfinfo2qual.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfindex.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfhethomratio.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfhetcount.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfglxgt.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfglbound.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfgenotypes.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfgenotypecompare.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfgenosummarize.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfgenosamplenames.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfgeno2haplo.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfgeno2alleles.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfflatten.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcffixup.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcffilter.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfevenregions.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfentropy.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfecho.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfdistance.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfcreatemulti.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfcountalleles.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfcommonsamples.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfcombine.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfcleancomplex.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfclassify.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfcheck.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfcat.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfbreakmulti.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfannotategenotypes.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfannotate.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfaltcount.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfallelicprimitives.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfafpath.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcfaddinfo.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcf2tsv.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcf2fasta.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/vcf2dag.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/smoother.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/sequenceDiversity.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/segmentIhs.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/segmentFst.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/pyvcflib.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/popStats.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/plotHaps.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/permuteSmooth.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/permuteGPAT++.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/pVst.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/pFst.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/normalize-iHS.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/meltEHH.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/iHS.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/hapLrt.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/genotypeSummary.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/dumpContigsFromHeader.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/bFst.1 -- Installing: /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/tmp/usr/man/man1/abba-baba.1 make[1]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' dh_install find debian/lib* -name filevercmp.h -delete cp -a debian/ext/filevercmp/filevercmp.h debian/libvcflib-dev/usr/include/vcflib/ mkdir -p debian/libvcflib-dev/usr/include/intervaltree mv debian/libvcflib-dev/usr/include/vcflib/IntervalTree.h debian/libvcflib-dev/usr/include/intervaltree # Remove un-needed py so, install in separate binary package when needed find debian/ -name 'pyvcflib.cpython*.so' -delete # install pkg-config file mkdir -p /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/libvcflib-dev/usr/lib/aarch64-linux-gnu/pkgconfig mv libvcflib.pc /build/reproducible-path/libvcflib-1.0.12+dfsg/debian/libvcflib-dev/usr/lib/aarch64-linux-gnu/pkgconfig rm -rf debian/*/usr/lib/vcflib/bin/*.R for pl in `grep -Rl '#!/usr/bin/env' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libvcflib-dev/usr/lib/aarch64-linux-gnu/libvcflib.so: No such file or directory make[1]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' dh_link for rscript in debian/libvcflib-tools/usr/lib/vcflib/scripts/*.R ; do \ scriptname=$(basename $rscript) ; \ dh_link -p libvcflib-tools usr/lib/vcflib/scripts/$scriptname usr/lib/R/site-library/vcflib/$scriptname ; \ done make[1]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' dh_fixperms chmod -x debian/*/usr/lib/vcflib/scripts/*.R make[1]: Leaving directory '/build/reproducible-path/libvcflib-1.0.12+dfsg' dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib2/usr/lib/aarch64-linux-gnu/libvcflib.so.2 was not linked against libdisorder.so.0 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: package libvcflib-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package libvcflib-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'libvcflib-tools-dbgsym' in '../libvcflib-tools-dbgsym_1.0.12+dfsg-1_arm64.deb'. dpkg-deb: building package 'libvcflib-dev' in '../libvcflib-dev_1.0.12+dfsg-1_arm64.deb'. dpkg-deb: building package 'libvcflib2' in '../libvcflib2_1.0.12+dfsg-1_arm64.deb'. dpkg-deb: building package 'libvcflib2-dbgsym' in '../libvcflib2-dbgsym_1.0.12+dfsg-1_arm64.deb'. dpkg-deb: building package 'libvcflib-tools' in '../libvcflib-tools_1.0.12+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libvcflib_1.0.12+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../libvcflib_1.0.12+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1518625 and its subdirectories I: Current time: Sun Nov 22 01:06:20 -12 2026 I: pbuilder-time-stamp: 1795352780 Mon Oct 20 06:43:24 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Mon Oct 20 06:43:24 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Mon Oct 20 06:45:38 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Mon Oct 20 06:45:38 UTC 2025 I: libvcflib_1.0.12+dfsg-1_arm64.changes: Format: 1.8 Date: Sun, 16 Feb 2025 14:54:48 +0100 Source: libvcflib Binary: libvcflib-dev libvcflib-tools libvcflib-tools-dbgsym libvcflib2 libvcflib2-dbgsym Architecture: arm64 Version: 1.0.12+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libvcflib-dev - C++ library for parsing and manipulating VCF files (development) libvcflib-tools - C++ library for parsing and manipulating VCF files (tools) libvcflib2 - C++ library for parsing and manipulating VCF files Closes: 1073098 1074044 Changes: libvcflib (1.0.12+dfsg-1) unstable; urgency=medium . [ Michael R. Crusoe ] * d/control: formally mark this package as 64-bit little-endian only. Closes: #1074044 . [ Étienne Mollier ] * d/watch: fix capture of pre-releases. Somehow, the scraping of Github tags page tended to meddle with the version capture, so this change introduces a switch to git mode, in addition to modifications to version mangling. * no_fsom patch: unfuzz. * shared_lib.patch: unfuzz. * tabix_linking.patch: unfuzz. * use_debian_packaged_fastahack.patch: refresh. * use_debian_packaged_libssw.patch: refresh. * use_debian_packaged_smithwaterman.patch: unfuzz. * wfa2_linking: unfuzz. * cmakelists-fixups.patch: new: fix a couple of configure issues. * d/libvcflib-tools.install: remove now missing vcfallelicprimitives. * d/libvcflib-dev.install: adjust to new target directory. . [ Charles Plessy ] * Build-depend on discount instead of markdown Closes: #1073098 . [ Andreas Tille ] * New upstream version * Standards-Version: 4.7.0 (routine-update) * Replace transitional package pkg-config by pkgconf in Build-Depends (routine-update) Checksums-Sha1: 176ed487eeedb5195b71d9cf5e06993407e6bbcb 77752 libvcflib-dev_1.0.12+dfsg-1_arm64.deb 6fe8ef415cc6b3ff76ac087f52b82e399328157d 9906236 libvcflib-tools-dbgsym_1.0.12+dfsg-1_arm64.deb 48354f159bf0a858b62a657af49d067c1f645373 540832 libvcflib-tools_1.0.12+dfsg-1_arm64.deb 8280c472054cd27a47701556709b54c669ce7f7f 2610248 libvcflib2-dbgsym_1.0.12+dfsg-1_arm64.deb 4784d735a9d3b3ccd388c2c063fc79d36ec0689d 197880 libvcflib2_1.0.12+dfsg-1_arm64.deb 467ce0645b08698830c3697c15b60590e68cd6f2 9437 libvcflib_1.0.12+dfsg-1_arm64.buildinfo Checksums-Sha256: 80297ba13d767ed9b3adf11889945ea0d91e12714c6067e72ca550238569e177 77752 libvcflib-dev_1.0.12+dfsg-1_arm64.deb 9f87561a6728f776261598f433b3d67f9f3a950cfa861df38b445b032da89bba 9906236 libvcflib-tools-dbgsym_1.0.12+dfsg-1_arm64.deb b17057f3e6c5c92f3eb2ada0719925ad58d6186e673dda69cc93d5dcfa635cd8 540832 libvcflib-tools_1.0.12+dfsg-1_arm64.deb 901e26b340ef9d92030456b6c30681b6301de5beb322b416c2937ea9268bdc33 2610248 libvcflib2-dbgsym_1.0.12+dfsg-1_arm64.deb d116cf067e0463f80a3480fdb7498c85fe4e4f00cd0a408ad5447dadd631a1f7 197880 libvcflib2_1.0.12+dfsg-1_arm64.deb ddb8fd31abed95511ab5c34d455a35922feeb2357ed0c76cda1757dc9ca0eb54 9437 libvcflib_1.0.12+dfsg-1_arm64.buildinfo Files: 7205c70a55023d5632fca3567564a0dc 77752 libdevel optional libvcflib-dev_1.0.12+dfsg-1_arm64.deb 142086756665c509b5b4cd4be4d13053 9906236 debug optional libvcflib-tools-dbgsym_1.0.12+dfsg-1_arm64.deb 516865f9870c7f673fc1747d37891609 540832 science optional libvcflib-tools_1.0.12+dfsg-1_arm64.deb bbb31310f080af1a1ecaf903338382cb 2610248 debug optional libvcflib2-dbgsym_1.0.12+dfsg-1_arm64.deb 8c2cb63013d044201d1950ca333eb0aa 197880 libs optional libvcflib2_1.0.12+dfsg-1_arm64.deb 1e31d6569977d1e96cab8bd12ba839ff 9437 science optional libvcflib_1.0.12+dfsg-1_arm64.buildinfo Mon Oct 20 06:45:39 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_4-101470.service; invocation ID: ecd1d762e34d4a3cbeff907057caa22d # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1gycwPHz/libvcflib_1.0.12+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1gycwPHz/libvcflib_1.0.12+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1gycwPHz/libvcflib_1.0.12+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1gycwPHz/b1/libvcflib_1.0.12+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.1gycwPHz/b2/libvcflib_1.0.12+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 221ms CPU time consumed: 175ms Memory peak: 18M (swap: 0B) Mon Oct 20 06:45:40 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Mon Oct 20 06:45:40 UTC 2025 I: libvcflib from forky built successfully and reproducibly on arm64. Mon Oct 20 06:45:41 UTC 2025 I: Removing signed libvcflib_1.0.12+dfsg-1_arm64.buildinfo.asc files: removed './b1/libvcflib_1.0.12+dfsg-1_arm64.buildinfo.asc' removed './b2/libvcflib_1.0.12+dfsg-1_arm64.buildinfo.asc'