Mon Sep 15 03:04:01 UTC 2025 I: starting to build metastudent-data/forky/arm64 on jenkins on '2025-09-15 03:03' Mon Sep 15 03:04:01 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/97210/console.log Mon Sep 15 03:04:01 UTC 2025 I: Downloading source for forky/metastudent-data=2.0.1-8 --2025-09-15 03:04:01-- http://deb.debian.org/debian/pool/main/m/metastudent-data/metastudent-data_2.0.1-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2136 (2.1K) [text/prs.lines.tag] Saving to: ‘metastudent-data_2.0.1-8.dsc’ 0K .. 100% 235M=0s 2025-09-15 03:04:01 (235 MB/s) - ‘metastudent-data_2.0.1-8.dsc’ saved [2136/2136] Mon Sep 15 03:04:01 UTC 2025 I: metastudent-data_2.0.1-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: metastudent-data Binary: metastudent-data Architecture: all Version: 2.0.1-8 Maintainer: Debian Med Packaging Team Uploaders: Tobias Hamp , Laszlo Kajan Homepage: https://rostlab.org/owiki/index.php/Metastudent Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/metastudent-data Vcs-Git: https://salsa.debian.org/med-team/metastudent-data.git Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: ncbi-blast+-legacy | blast2, rsync Package-List: metastudent-data deb science optional arch=all Checksums-Sha1: 69e4fe22d32f87a3dc5da934252b693a91b0c999 152941188 metastudent-data_2.0.1.orig.tar.xz 349c672936c7c43399ac40db53335f6f45b75032 5444 metastudent-data_2.0.1-8.debian.tar.xz Checksums-Sha256: 8bec8a080711cba270256fdbc1035961a63ba0b5af3f6f75f67741e9b53a34e7 152941188 metastudent-data_2.0.1.orig.tar.xz a5fc40b447fd232e02437fb906c4edd1e4c82d30e1564f1f1356bf3054896f4e 5444 metastudent-data_2.0.1-8.debian.tar.xz Files: 981f92b555b8e2846423dd9c0a616ce5 152941188 metastudent-data_2.0.1.orig.tar.xz 271c755735951328425fcbb25f24a362 5444 metastudent-data_2.0.1-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHpLH8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHlPA//cKrZ6u0gBLvCe9CBPuQX/qOcaIp6HPj4 bQWPSo0qJhJfIi60ZdnEPCEZmoTcs1oOfHFM+bHzb6wkT+1D1eCk+4D3tcaVfqop yZqfSm+T7dNNI3hiKDRsGVKmKzo241zGsNeZn2mbmHNbzuqmhUSUPWRAnQmcbW8S NRL2gT4wz4cmJSK/NVJUHjQBunOEgt32msHPgC40HNmVW+vJ/qenFb7U8TcYxSaV MRrhboI5L8liMaH2c8F5+WkLqQRMqny3ffy1UnwqWPwLi8OmLXM1TwsBkNVC0N0T gltPOKFmWR+0Kq/SFLueesdwM1c2OZWCLVO5DNba88Aq23THWuxatzc87xwsazKH kJIz+B+pyez+Y9e+Y6dKJWInoaJ64z8nIF0i1YfB1Vx838YoMBCBQ2wzP3o5s3qb 44Fzmunm1YcleNmDRJpzV92DUL/nPIbgYOpYbr3c1aFNqotr1iEb3KBsebA7jKQ2 RgkZYjDfANaIiFntMIZhTKcAox1T5+0XsQrCcFmjO0r4MNDwaQgD0Q1ieq7dat7p lJmOvbV9PVs23yshCQPAua5PKeIoyimoS5EKEUzD9Y0pyMeTKYDoQPicwpcTTjrz XTnm5Ua0MTPxAalRr947rm8pCvILze6M7GAu78TxcxpPEaJpAldnsytPZJ79slHB q319yl1MyT8= =9SXt -----END PGP SIGNATURE----- Mon Sep 15 03:04:01 UTC 2025 I: Checking whether the package is not for us Mon Sep 15 03:04:01 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Mon Sep 15 03:04:01 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Mon Sep 15 03:10:06 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 15:04:06 -12 2025 I: pbuilder-time-stamp: 1757905446 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metastudent-data_2.0.1-8.dsc] I: copying [./metastudent-data_2.0.1.orig.tar.xz] I: copying [./metastudent-data_2.0.1-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./metastudent-data_2.0.1-8.dsc: no acceptable signature found dpkg-source: info: extracting metastudent-data in metastudent-data-2.0.1 dpkg-source: info: unpacking metastudent-data_2.0.1.orig.tar.xz dpkg-source: info: unpacking metastudent-data_2.0.1-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_formatdb_fix_prot_dbtype.patch dpkg-source: info: applying use_blastdb_format_4.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/390527/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='5b82627f060d4f1da157c98f905bc756' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='390527' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2vnO7nKv/pbuilderrc_NTZf --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2vnO7nKv/b1 --logfile b1/build.log metastudent-data_2.0.1-8.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/390527/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), ncbi-blast+-legacy | blast2, rsync dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+-legacy | blast2; however: Package ncbi-blast+-legacy is not installed. Package blast2 is not installed. pbuilder-satisfydepends-dummy depends on rsync; however: Package rsync is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libncbi-vdb3{a} libnghttp2-14{a} libpipeline1{a} libpopt0{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-blast+-legacy{a} ncbi-data{a} ncbi-vdb-data{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} rsync{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 37.8 MB of archives. After unpacking 180 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 libpopt0 arm64 1.19+dfsg-2 [42.8 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 rsync arm64 3.4.1+ds1-5 [409 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-2 [93.9 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 38 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 liblmdb0 arm64 0.9.31-1+b2 [43.5 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libmbedcrypto16 arm64 3.6.4-2 [346 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libmbedx509-7 arm64 3.6.4-2 [150 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libmbedtls21 arm64 3.6.4-2 [229 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2 [1096 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 ncbi-data all 6.1.20170106+dfsg2-6 [3541 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 ncbi-blast+ arm64 2.16.0+ds-7 [14.5 MB] Get: 56 http://deb.debian.org/debian forky/main arm64 ncbi-blast+-legacy all 2.16.0+ds-7 [12.6 kB] Fetched 37.8 MB in 0s (120 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_arm64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:arm64 (3.13.7-1) ... Setting up libexpat1:arm64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20354 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_arm64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21369 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.5-1_arm64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package libpopt0:arm64. Preparing to unpack .../01-libpopt0_1.19+dfsg-2_arm64.deb ... Unpacking libpopt0:arm64 (1.19+dfsg-2) ... Selecting previously unselected package rsync. Preparing to unpack .../02-rsync_3.4.1+ds1-5_arm64.deb ... Unpacking rsync (3.4.1+ds1-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.1-2_arm64.deb ... Unpacking bsdextrautils (2.41.1-2) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../24-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../26-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../27-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package liblmdb0:arm64. Preparing to unpack .../32-liblmdb0_0.9.31-1+b2_arm64.deb ... Unpacking liblmdb0:arm64 (0.9.31-1+b2) ... Selecting previously unselected package libmbedcrypto16:arm64. Preparing to unpack .../33-libmbedcrypto16_3.6.4-2_arm64.deb ... Unpacking libmbedcrypto16:arm64 (3.6.4-2) ... Selecting previously unselected package libmbedx509-7:arm64. Preparing to unpack .../34-libmbedx509-7_3.6.4-2_arm64.deb ... Unpacking libmbedx509-7:arm64 (3.6.4-2) ... Selecting previously unselected package libmbedtls21:arm64. Preparing to unpack .../35-libmbedtls21_3.6.4-2_arm64.deb ... Unpacking libmbedtls21:arm64 (3.6.4-2) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../36-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:arm64. Preparing to unpack .../37-libncbi-vdb3_3.2.1+dfsg-2_arm64.deb ... Unpacking libncbi-vdb3:arm64 (3.2.1+dfsg-2) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../38-libnghttp2-14_1.64.0-1.1+b1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../39-libuv1t64_1.51.0-2_arm64.deb ... Unpacking libuv1t64:arm64 (1.51.0-2) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../40-ncbi-data_6.1.20170106+dfsg2-6_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-6) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../41-ncbi-blast+_2.16.0+ds-7_arm64.deb ... Unpacking ncbi-blast+ (2.16.0+ds-7) ... Selecting previously unselected package ncbi-blast+-legacy. Preparing to unpack .../42-ncbi-blast+-legacy_2.16.0+ds-7_all.deb ... Unpacking ncbi-blast+-legacy (2.16.0+ds-7) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up liblmdb0:arm64 (0.9.31-1+b2) ... Setting up ncbi-data (6.1.20170106+dfsg2-6) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libuv1t64:arm64 (1.51.0-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Sep 15 03:05:05 UTC 2025. Universal Time is now: Mon Sep 15 03:05:05 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up netbase (6.5) ... Setting up libmbedcrypto16:arm64 (3.6.4-2) ... Setting up readline-common (8.3-3) ... Setting up libpopt0:arm64 (1.19+dfsg-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libmbedx509-7:arm64 (3.6.4-2) ... Setting up libmbedtls21:arm64 (3.6.4-2) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.7-1) ... Setting up rsync (3.4.1+ds1-5) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libpython3-stdlib:arm64 (3.13.5-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libncbi-vdb3:arm64 (3.2.1+dfsg-2) ... Setting up python3 (3.13.5-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up ncbi-blast+ (2.16.0+ds-7) ... Setting up ncbi-blast+-legacy (2.16.0+ds-7) ... Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metastudent-data_2.0.1-8_source.changes dpkg-buildpackage: info: source package metastudent-data dpkg-buildpackage: info: source version 2.0.1-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf Makefile.am:4: warning: shell cat dataversion.txt: non-POSIX variable name Makefile.am:4: (probably a GNU make extension) Makefile.am:23: warning: dir $@: non-POSIX variable name Makefile.am:23: (probably a GNU make extension) dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' mkdir -p dataset_201401/BPO/ && \ makeblastdb -dbtype prot -in "dataset_201401/BPO/goasp.fasta" -out "dataset_201401/BPO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/MFO/ && \ makeblastdb -dbtype prot -in "dataset_201401/MFO/goasp.fasta" -out "dataset_201401/MFO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/CCO/ && \ makeblastdb -dbtype prot -in "dataset_201401/CCO/goasp.fasta" -out "dataset_201401/CCO/goasp.fasta" -blastdb_version 4 Building a new DB, current time: 09/15/2025 03:05:28 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/MFO/goasp.fasta New DB title: dataset_201401/MFO/goasp.fasta Sequence type: Protein Keep MBits: T Building a new DB, current time: 09/15/2025 03:05:28 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/CCO/goasp.fasta New DB title: dataset_201401/CCO/goasp.fasta Sequence type: Protein Keep MBits: T Maximum file size: 3000000000B Building a new DB, current time: 09/15/2025 03:05:28 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/BPO/goasp.fasta New DB title: dataset_201401/BPO/goasp.fasta Sequence type: Protein Keep MBits: T Maximum file size: 3000000000B Maximum file size: 3000000000B Adding sequences from FASTA; added 392822 sequences in 20.3879 seconds. Adding sequences from FASTA; added 486000 sequences in 22.8049 seconds. Adding sequences from FASTA; added 459503 sequences in 23.3971 seconds. make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/metastudent-data/ make -j12 install DESTDIR=/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Nothing to be done for 'install-exec-am'. mkdir -p "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ rsync -rt --include '*.txt' --include '*.dat' --include '*.phr' --include '*.pin' --include '*.psq' --exclude '*.*' "./dataset_201401" "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data/" && \ chmod -R a+rX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ chmod -R u+rwX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" /usr/bin/mkdir -p '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' /usr/bin/install -c -m 644 dataversion.txt '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' make[2]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'metastudent-data' in '../metastudent-data_2.0.1-8_all.deb'. dpkg-genbuildinfo --build=binary -O../metastudent-data_2.0.1-8_arm64.buildinfo dpkg-genchanges --build=binary -O../metastudent-data_2.0.1-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/390527 and its subdirectories I: Current time: Sun Sep 14 15:09:03 -12 2025 I: pbuilder-time-stamp: 1757905743 Mon Sep 15 03:10:07 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Mon Sep 15 03:10:07 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Mon Sep 15 03:13:53 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Mon Sep 15 03:13:53 UTC 2025 I: metastudent-data_2.0.1-8_arm64.changes: Format: 1.8 Date: Thu, 20 Jan 2022 10:14:54 +0100 Source: metastudent-data Binary: metastudent-data Architecture: all Version: 2.0.1-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: metastudent-data - predictor of Gene Ontology terms from protein sequence - data fil Changes: metastudent-data (2.0.1-8) unstable; urgency=medium . * Team upload. * Upstream download vanished * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: 0b494f62c669f8db50f9b41093573d7615e35859 224714192 metastudent-data_2.0.1-8_all.deb c92da9ae18523eae019c2726a7193688a419b8c1 5466 metastudent-data_2.0.1-8_arm64.buildinfo Checksums-Sha256: f7840cf1f053a2a67d2bb9aed8c6d475ae61fa21861e8c820a46a8686518d79a 224714192 metastudent-data_2.0.1-8_all.deb ef22f970009ceb2ede4f61ba57363d1a932e2591980291d6bb55a669d7ed3d57 5466 metastudent-data_2.0.1-8_arm64.buildinfo Files: 7eec6cb3ca81cae771d80683311b772e 224714192 science optional metastudent-data_2.0.1-8_all.deb 9f9893e1aa821cd101f410538a3ea8fa 5466 science optional metastudent-data_2.0.1-8_arm64.buildinfo Mon Sep 15 03:13:54 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_10-97210.service; invocation ID: 2d5eac07250143e28e51b44facea5a6d # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2vnO7nKv/metastudent-data_2.0.1-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.2vnO7nKv/metastudent-data_2.0.1-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.2vnO7nKv/metastudent-data_2.0.1-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2vnO7nKv/b1/metastudent-data_2.0.1-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.2vnO7nKv/b2/metastudent-data_2.0.1-8_arm64.changes ## close_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 18.140s) 8.572s 30 calls xxd 6.163s 8 calls diff 3.293s 6 calls xz 0.055s 2 calls cmp 0.055s 2 calls cmp (external) 0.001s 14 calls cmp (internal) ## compare_files (cumulative) (total time: 61.820s) 14.731s 1 call abc.DotChangesFile 14.706s 1 call abc.DebFile 14.164s 2 calls abc.XzFile 10.799s 1 call abc.DebDataTarFile 7.400s 3 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.015s 1 call abc.TarFile 0.003s 1 call abc.Md5sumsFile ## container_extract (total time: 6.797s) 3.293s 6 calls diffoscope.comparators.xz.XzContainer 2.994s 38 calls diffoscope.comparators.deb.DebTarContainer 0.508s 8 calls diffoscope.comparators.deb.DebContainer 0.002s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 7.464s) 7.464s 7 calls linediff ## has_same_content_as (total time: 0.057s) 0.050s 1 call abc.DebDataTarFile 0.006s 2 calls abc.XzFile 0.001s 3 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.000s 1 call abc.DebFile 0.000s 2 calls abc.TextFile 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.TarFile ## main (total time: 23.925s) 23.797s 2 calls outputs 0.128s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 7.481s) 7.480s 1 call html 0.000s 1 call text 0.000s 1 call json ## recognizes (total time: 1.612s) 1.357s 12 calls diffoscope.comparators.binary.FilesystemFile 0.223s 1656 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.018s 54 calls diffoscope.comparators.debian.DebControlMember 0.013s 264 calls diffoscope.comparators.utils.archive.ArchiveMember ## specialize (total time: 2.012s) 2.012s 13 calls specialize Finished with result: success Main processes terminated with: code=exited, status=1/FAILURE Service runtime: 24.189s CPU time consumed: 48.268s Memory peak: 3.6G (swap: 0B) Mon Sep 15 03:14:18 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Mon Sep 15 03:14:18 UTC 2025 E: metastudent-data failed to build reproducibly in forky on arm64. Mon Sep 15 03:14:19 UTC 2025 I: Removing signed metastudent-data_2.0.1-8_arm64.buildinfo.asc files: removed './b1/metastudent-data_2.0.1-8_arm64.buildinfo.asc' removed './b2/metastudent-data_2.0.1-8_arm64.buildinfo.asc'