Tue Oct 21 00:16:46 UTC 2025 I: starting to build openstructure/forky/arm64 on jenkins on '2025-10-21 00:16' Tue Oct 21 00:16:46 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/101585/console.log Tue Oct 21 00:16:46 UTC 2025 I: Downloading source for forky/openstructure=2.11.1-1 --2025-10-21 00:16:46-- http://deb.debian.org/debian/pool/main/o/openstructure/openstructure_2.11.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 4885 (4.8K) [text/prs.lines.tag] Saving to: ‘openstructure_2.11.1-1.dsc’ 0K .... 100% 504M=0s 2025-10-21 00:16:46 (504 MB/s) - ‘openstructure_2.11.1-1.dsc’ saved [4885/4885] Tue Oct 21 00:16:46 UTC 2025 I: openstructure_2.11.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: openstructure Binary: libost-base2.11, libost-bindings2.11, libost-conop2.11, libost-db2.11, libost-geom2.11, libost-gfx2.11, libost-gui2.11, libost-img-alg2.11, libost-img2.11, libost-info2.11, libost-io2.11, libost-mol-alg2.11, libost-mol-mm2.11, libost-mol2.11, libost-seq-alg2.11, libost-seq2.11, openstructure, python3-ost, libost-base-dev, libost-bindings-dev, libost-conop-dev, libost-db-dev, libost-geom-dev, libost-gfx-dev, libost-gui-dev, libost-img-alg-dev, libost-img-dev, libost-info-dev, libost-io-dev, libost-mol-alg-dev, libost-mol-mm-dev, libost-mol-dev, libost-seq-alg-dev, libost-seq-dev Architecture: any Version: 2.11.1-1 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://www.openstructure.org Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/openstructure Vcs-Git: https://salsa.debian.org/debichem-team/openstructure.git Testsuite: autopkgtest Testsuite-Triggers: clustalw, dssp, ncbi-blast+, voronota Build-Depends: clustalw [amd64 arm64 mips64el ppc64el riscv64 s390x] , cmake, debhelper-compat (= 13), dh-python, dssp , libboost-all-dev, libeigen3-dev, libfftw3-dev, libglu1-mesa-dev, libopenmm-dev [amd64 arm64 armhf ppc64el riscv64 alpha ia64 loong64 m68k sh4], libopenmm-plugins [amd64 arm64 armhf ppc64el riscv64 alpha ia64 loong64 m68k sh4], libparasail-dev [amd64], libpng-dev, libqt5opengl5-dev, libsqlite3-dev, libtiff-dev, python3-dev, python3-matplotlib , python3-numpy , python3-pil , python3-pyqt5, python3-scipy , qtbase5-dev, voronota Package-List: libost-base-dev deb libdevel optional arch=any libost-base2.11 deb libs optional arch=any libost-bindings-dev deb libdevel optional arch=any libost-bindings2.11 deb libs optional arch=any libost-conop-dev deb libdevel optional arch=any libost-conop2.11 deb libs optional arch=any libost-db-dev deb libdevel optional arch=any libost-db2.11 deb libs optional arch=any libost-geom-dev deb libdevel optional arch=any libost-geom2.11 deb libs optional arch=any libost-gfx-dev deb libdevel optional arch=any libost-gfx2.11 deb libs optional arch=any libost-gui-dev deb libdevel optional arch=any libost-gui2.11 deb libs optional arch=any libost-img-alg-dev deb libdevel optional arch=any libost-img-alg2.11 deb libs optional arch=any libost-img-dev deb libdevel optional arch=any libost-img2.11 deb libs optional arch=any libost-info-dev deb libdevel optional arch=any libost-info2.11 deb libs optional arch=any libost-io-dev deb libdevel optional arch=any libost-io2.11 deb libs optional arch=any libost-mol-alg-dev deb libdevel optional arch=any libost-mol-alg2.11 deb libs optional arch=any libost-mol-dev deb libdevel optional arch=any libost-mol-mm-dev deb libdevel optional arch=amd64,arm64,armhf,ppc64el,riscv64,alpha,ia64,loong64,m68k,sh4 libost-mol-mm2.11 deb libs optional arch=amd64,arm64,armhf,ppc64el,riscv64,alpha,ia64,loong64,m68k,sh4 libost-mol2.11 deb libs optional arch=any libost-seq-alg-dev deb libdevel optional arch=any libost-seq-alg2.11 deb libs optional arch=any libost-seq-dev deb libdevel optional arch=any libost-seq2.11 deb libs optional arch=any openstructure deb science optional arch=any python3-ost deb python optional arch=any Checksums-Sha1: e4a7bb4f779df8392161ecf2219d6a47e1afbfac 27429940 openstructure_2.11.1.orig.tar.xz b0a625432ba6c0d0b4d8dd5dba2edd2863ad30fe 92349472 openstructure_2.11.1-1.debian.tar.xz Checksums-Sha256: bdb74cf2b5e96762121340dd26162eeee2f7322148dbe34979a5b6b34409cfed 27429940 openstructure_2.11.1.orig.tar.xz 66789929da198b56192f1f7abab8231c4753d517b581d1da98691052545652c1 92349472 openstructure_2.11.1-1.debian.tar.xz Files: 42902748bbd28da92798ebf77ee48e39 27429940 openstructure_2.11.1.orig.tar.xz 31909204fddb23c9971e15d421ecd554 92349472 openstructure_2.11.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmjvTtISHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKH8ugP/1n6k7YFf8RcA3uXGFzk+5Xt4Nxg33va aO88b79cDQqtJGGdZxwF+qLTo2ETMvjipmcm0NX+pX67cV+9C8y8sr1pFfd1hXMS rNNNITGqHduU5rCPlEP/OdyBrkt3NLaIHFgMwA+iHDyrczwtJt7H1RfOXrycOvnv Ve6mYoH0TnMwKWqzknpYA+qvHuTWDF4ryrjhbTp5sCigHtCbBR9yoSN6U/D1rJBy dkwZ5Bf4uDqo5vOtQn4wcJDZ8OsL36VFPCo7cQ5BChUTaTe+GEII43Gmri0EIeZ2 BEtMNUqTq7C01um97rWTOgS4W+gFFGXRJSArPmPIp6t5b9mqpvojFBIAUpxnEzjN kroS9eYipxhv1vycm//hPvsWu28kWpoeD9Ns6IftECzvbUFz6Y0Lyul2bDfKD1wj zYIEkFzw3w8Z8T3MQxwf9hIbFG/pmsDBqpQ4moB6lo7xViYMn0dXU1MQvIC6dtBP KVbC7GkZWniDd1BI3T05B6WhyUH/6WgQIJvRuP0OKMbl2olYhWszyBQcUEpdOQHq AzPqUoNlpZH2nYGOB+LCj5EkZ9wslmMX9nMZBGJrLElG/Htm1ORKwBvpd+FyFjAf QvhWy5SDz/d0+N6IfQtTHnkuzYYyzavOc3/64LkhJtNiZdbB/eQkaoeCi0wjl21b EpsjHoWj383i =Y1Ig -----END PGP SIGNATURE----- Tue Oct 21 00:16:46 UTC 2025 I: Checking whether the package is not for us Tue Oct 21 00:16:46 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Tue Oct 21 00:16:46 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Tue Oct 21 00:27:08 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 22 18:39:48 -12 2026 I: pbuilder-time-stamp: 1795415988 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [openstructure_2.11.1-1.dsc] I: copying [./openstructure_2.11.1.orig.tar.xz] I: copying [./openstructure_2.11.1-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./openstructure_2.11.1-1.dsc: no acceptable signature found dpkg-source: info: extracting openstructure in openstructure-2.11.1 dpkg-source: info: unpacking openstructure_2.11.1.orig.tar.xz dpkg-source: info: unpacking openstructure_2.11.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python-dist-packages.patch dpkg-source: info: applying fix-quotes-in-ENV.patch dpkg-source: info: applying skip-network-tests.patch dpkg-source: info: applying add-python3-shebangs.patch dpkg-source: info: applying ost_config.patch dpkg-source: info: applying skip-dssp-tests.patch dpkg-source: info: applying increase-tolerance-test_io_sequence_profile.patch dpkg-source: info: applying skip-test_io_img.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/203992/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='203992' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NQdbiM8Q/pbuilderrc_h7mi --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NQdbiM8Q/b1 --logfile b1/build.log openstructure_2.11.1-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/203992/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: clustalw, cmake, debhelper-compat (= 13), dh-python, dssp, libboost-all-dev, libeigen3-dev, libfftw3-dev, libglu1-mesa-dev, libopenmm-dev, libopenmm-plugins, libpng-dev, libqt5opengl5-dev, libsqlite3-dev, libtiff-dev, python3-dev, python3-matplotlib, python3-numpy, python3-pil, python3-pyqt5, python3-scipy, qtbase5-dev, voronota dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on clustalw; however: Package clustalw is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dssp; however: Package dssp is not installed. pbuilder-satisfydepends-dummy depends on libboost-all-dev; however: Package libboost-all-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libglu1-mesa-dev; however: Package libglu1-mesa-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenmm-dev; however: Package libopenmm-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenmm-plugins; however: Package libopenmm-plugins is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on libqt5opengl5-dev; however: Package libqt5opengl5-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libtiff-dev; however: Package libtiff-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pil; however: Package python3-pil is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5; however: Package python3-pyqt5 is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on qtbase5-dev; however: Package qtbase5-dev is not installed. pbuilder-satisfydepends-dummy depends on voronota; however: Package voronota is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} clustalw{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dssp{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gcc-14-base{a} gettext{a} gettext-base{a} gfortran-15{a} gfortran-15-aarch64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libabsl20240722{a} libamd-comgr2{a} libamdhip64-5{a} libaom3{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif16{a} libblas3{a} libboost-all-dev{a} libboost-atomic-dev{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-container-dev{a} libboost-container1.83-dev{a} libboost-container1.83.0{a} libboost-context-dev{a} libboost-context1.83-dev{a} libboost-context1.83.0{a} libboost-coroutine-dev{a} libboost-coroutine1.83-dev{a} libboost-coroutine1.83.0{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-exception-dev{a} libboost-exception1.83-dev{a} libboost-fiber-dev{a} libboost-fiber1.83-dev{a} libboost-fiber1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-graph-dev{a} libboost-graph-parallel-dev{a} libboost-graph-parallel1.83-dev{a} libboost-graph-parallel1.83.0{a} libboost-graph1.83-dev{a} libboost-graph1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-json-dev{a} libboost-json1.83-dev{a} libboost-json1.83.0{a} libboost-locale-dev{a} libboost-locale1.83-dev{a} libboost-locale1.83.0{a} libboost-log-dev{a} libboost-log1.83-dev{a} libboost-log1.83.0{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi-python-dev{a} libboost-mpi-python1.83-dev{a} libboost-mpi-python1.83.0{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-nowide-dev{a} libboost-nowide1.83-dev{a} libboost-nowide1.83.0{a} libboost-numpy-dev{a} libboost-numpy1.83-dev{a} libboost-numpy1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost-random-dev{a} libboost-random1.83-dev{a} libboost-random1.83.0{a} libboost-regex-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-stacktrace-dev{a} libboost-stacktrace1.83-dev{a} libboost-stacktrace1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-test-dev{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost-tools-dev{a} libboost-type-erasure-dev{a} libboost-type-erasure1.83-dev{a} libboost-type-erasure1.83.0{a} libboost-url-dev{a} libboost-url1.83-dev{a} libboost-url1.83.0{a} libboost-wave-dev{a} libboost-wave1.83-dev{a} libboost-wave1.83.0{a} libboost1.83-dev{a} libboost1.83-tools-dev{a} libbrotli1{a} libcbor0.10{a} libcifpp-data{a} libcifpp7{a} libcom-err2{a} libcups2t64{a} libcurl4t64{a} libdav1d7{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libevdev2{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgbm1{a} libgcc-14-dev{a} libgcrypt20{a} libgfortran-15-dev{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglib2.0-0t64{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libimagequant0{a} libinput-bin{a} libinput10{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc-dev{a} liblerc4{a} libllvm17t64{a} libllvm19{a} libltdl-dev{a} libltdl7{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmtdev1t64{a} libmunge2{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopengl-dev{a} libopengl0{a} libopenjp2-7{a} libopenmm-dev{a} libopenmm-plugins{a} libopenmm8.1{a} libopenmpi-dev{a} libopenmpi40{a} libp11-kit0{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpkgconf3{a} libpmix2t64{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libqt5concurrent5t64{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5designer5{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5opengl5-dev{a} libqt5opengl5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} libraqm0{a} librav1e0.8{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv-dev{a} libsharpyuv0{a} libsm6{a} libsqlite3-dev{a} libssh2-1t64{a} libstdc++-14-dev{a} libsvtav1enc2{a} libtasn1-6{a} libtcl8.6{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtk8.6{a} libtool{a} libuchardet0{a} libucx0{a} libunistring5{a} libuv1t64{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxft2{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2-16{a} libxnvctrl0{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxxf86vm1{a} libyuv0{a} libz3-4{a} libzopfli1{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-attr{a} python3-brotli{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-fonttools{a} python3-fs{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-platformdirs{a} python3-pyparsing{a} python3-pyqt5{a} python3-pyqt5.sip{a} python3-scipy{a} python3-sympy{a} python3-tk{a} python3-ufolib2{a} python3-unicodedata2{a} python3-zopfli{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} qt5-qmake{a} qt5-qmake-bin{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} readline-common{a} sensible-utils{a} shared-mime-info{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} voronota{a} x11-common{a} x11proto-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libldap-common libmail-sendmail-perl libpng-tools libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python3-bs4 python3-cssselect python3-html5lib python3-olefile python3-pooch python3-yaml qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xauth xdg-user-dirs 0 packages upgraded, 452 newly installed, 0 to remove and 0 not upgraded. Need to get 400 MB of archives. After unpacking 2035 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.8-1 [858 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.8-1 [2062 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.8-1 [1899 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.8-1 [765 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1.2 [138 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-4 [371 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 python3-numpy arm64 1:2.2.4+ds-1.2 [3620 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-1 [94.3 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libcbor0.10 arm64 0.10.2-2 [27.4 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libfido2-1 arm64 1.16.0-2 [74.4 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 39 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 openssh-client arm64 1:10.0p1-8 [925 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [982 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 x11-common all 1:7.7+25 [217 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libtk8.6 arm64 8.6.17-1 [740 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [537 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 blt arm64 2.5.3+dfsg-8 [5984 B] Get: 68 http://deb.debian.org/debian forky/main arm64 clustalw arm64 2.1+lgpl-7+b2 [256 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.16.0-4 [368 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get: 92 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 97 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 98 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 99 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 100 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 101 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 102 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 103 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 104 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 105 http://deb.debian.org/debian forky/main arm64 libcifpp-data all 7.0.9-1 [484 kB] Get: 106 http://deb.debian.org/debian forky/main arm64 libcifpp7 arm64 7.0.9-1 [862 kB] Get: 107 http://deb.debian.org/debian forky/main arm64 dssp arm64 4.5.5-1 [599 kB] Get: 108 http://deb.debian.org/debian forky/main arm64 fontconfig arm64 2.15.0-2.4 [463 kB] Get: 109 http://deb.debian.org/debian forky/main arm64 fonts-lyx all 2.4.4-2 [190 kB] Get: 110 http://deb.debian.org/debian forky/main arm64 gcc-14-base arm64 14.3.0-8 [52.1 kB] Get: 111 http://deb.debian.org/debian forky/main arm64 libgfortran-15-dev arm64 15.2.0-4 [411 kB] Get: 112 http://deb.debian.org/debian forky/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-4 [76.9 MB] Get: 113 http://deb.debian.org/debian forky/main arm64 gfortran-15 arm64 15.2.0-4 [17.9 kB] Get: 114 http://deb.debian.org/debian forky/main arm64 libnl-3-200 arm64 3.11.0-2 [57.9 kB] Get: 115 http://deb.debian.org/debian forky/main arm64 libnl-route-3-200 arm64 3.11.0-2 [176 kB] Get: 116 http://deb.debian.org/debian forky/main arm64 libibverbs1 arm64 56.1-1+b1 [59.8 kB] Get: 117 http://deb.debian.org/debian forky/main arm64 ibverbs-providers arm64 56.1-1+b1 [338 kB] Get: 118 http://deb.debian.org/debian forky/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 119 http://deb.debian.org/debian forky/main arm64 icu-devtools arm64 76.1-4 [200 kB] Get: 120 http://deb.debian.org/debian forky/main arm64 libabsl20240722 arm64 20240722.0-4 [452 kB] Get: 121 http://deb.debian.org/debian forky/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 122 http://deb.debian.org/debian forky/main arm64 libllvm17t64 arm64 1:17.0.6-22+b3 [21.3 MB] Get: 123 http://deb.debian.org/debian forky/main arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3+b2 [12.1 MB] Get: 124 http://deb.debian.org/debian forky/main arm64 libdrm-common all 2.4.125-2 [8576 B] Get: 125 http://deb.debian.org/debian forky/main arm64 libdrm2 arm64 2.4.125-2 [38.4 kB] Get: 126 http://deb.debian.org/debian forky/main arm64 libdrm-amdgpu1 arm64 2.4.125-2 [22.3 kB] Get: 127 http://deb.debian.org/debian forky/main arm64 libnuma1 arm64 2.0.19-1 [21.6 kB] Get: 128 http://deb.debian.org/debian forky/main arm64 libhsakmt1 arm64 6.2.4+ds-1 [58.3 kB] Get: 129 http://deb.debian.org/debian forky/main arm64 libhsa-runtime64-1 arm64 6.1.2-3 [302 kB] Get: 130 http://deb.debian.org/debian forky/main arm64 libamdhip64-5 arm64 5.7.1-7 [8835 kB] Get: 131 http://deb.debian.org/debian forky/main arm64 libaom3 arm64 3.13.1-1 [1631 kB] Get: 132 http://deb.debian.org/debian forky/main arm64 libavahi-common-data arm64 0.8-17 [113 kB] Get: 133 http://deb.debian.org/debian forky/main arm64 libavahi-common3 arm64 0.8-17 [44.9 kB] Get: 134 http://deb.debian.org/debian forky/main arm64 libdbus-1-3 arm64 1.16.2-2 [169 kB] Get: 135 http://deb.debian.org/debian forky/main arm64 libavahi-client3 arm64 0.8-17 [48.5 kB] Get: 136 http://deb.debian.org/debian forky/main arm64 libdav1d7 arm64 1.5.1-1 [252 kB] Get: 137 http://deb.debian.org/debian forky/main arm64 libgav1-1 arm64 0.19.0-3+b1 [491 kB] Get: 138 http://deb.debian.org/debian forky/main arm64 librav1e0.8 arm64 0.8.1-5 [688 kB] Get: 139 http://deb.debian.org/debian forky/main arm64 libsvtav1enc2 arm64 2.3.0+dfsg-1 [1558 kB] Get: 140 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 141 http://deb.debian.org/debian forky/main arm64 libyuv0 arm64 0.0.1919.20250919-1 [138 kB] Get: 142 http://deb.debian.org/debian forky/main arm64 libavif16 arm64 1.3.0-1+b1 [127 kB] Get: 143 http://deb.debian.org/debian forky/main arm64 libgcc-14-dev arm64 14.3.0-8 [2364 kB] Get: 144 http://deb.debian.org/debian forky/main arm64 libstdc++-14-dev arm64 14.3.0-8 [2567 kB] Get: 145 http://deb.debian.org/debian forky/main arm64 libboost1.83-dev arm64 1.83.0-5 [10.6 MB] Get: 146 http://deb.debian.org/debian forky/main arm64 libboost-atomic1.83.0 arm64 1.83.0-5 [234 kB] Get: 147 http://deb.debian.org/debian forky/main arm64 libboost-atomic1.83-dev arm64 1.83.0-5 [235 kB] Get: 148 http://deb.debian.org/debian forky/main arm64 libboost-atomic-dev arm64 1.83.0.2+b2 [3892 B] Get: 149 http://deb.debian.org/debian forky/main arm64 libboost-chrono1.83.0t64 arm64 1.83.0-5 [240 kB] Get: 150 http://deb.debian.org/debian forky/main arm64 libboost-chrono1.83-dev arm64 1.83.0-5 [245 kB] Get: 151 http://deb.debian.org/debian forky/main arm64 libboost-chrono-dev arm64 1.83.0.2+b2 [4212 B] Get: 152 http://deb.debian.org/debian forky/main arm64 libboost-container1.83.0 arm64 1.83.0-5 [259 kB] Get: 153 http://deb.debian.org/debian forky/main arm64 libboost-container1.83-dev arm64 1.83.0-5 [265 kB] Get: 154 http://deb.debian.org/debian forky/main arm64 libboost-container-dev arm64 1.83.0.2+b2 [4064 B] Get: 155 http://deb.debian.org/debian forky/main arm64 libboost-date-time1.83.0 arm64 1.83.0-5 [231 kB] Get: 156 http://deb.debian.org/debian forky/main arm64 libboost-serialization1.83.0 arm64 1.83.0-5 [325 kB] Get: 157 http://deb.debian.org/debian forky/main arm64 libboost-serialization1.83-dev arm64 1.83.0-5 [374 kB] Get: 158 http://deb.debian.org/debian forky/main arm64 libboost-date-time1.83-dev arm64 1.83.0-5 [239 kB] Get: 159 http://deb.debian.org/debian forky/main arm64 libboost-system1.83.0 arm64 1.83.0-5 [231 kB] Get: 160 http://deb.debian.org/debian forky/main arm64 libboost-system1.83-dev arm64 1.83.0-5 [232 kB] Get: 161 http://deb.debian.org/debian forky/main arm64 libboost-thread1.83.0 arm64 1.83.0-5 [266 kB] Get: 162 http://deb.debian.org/debian forky/main arm64 libboost-thread1.83-dev arm64 1.83.0-5 [277 kB] Get: 163 http://deb.debian.org/debian forky/main arm64 libboost-context1.83.0 arm64 1.83.0-5 [232 kB] Get: 164 http://deb.debian.org/debian forky/main arm64 libboost-context1.83-dev arm64 1.83.0-5 [233 kB] Get: 165 http://deb.debian.org/debian forky/main arm64 libboost-context-dev arm64 1.83.0.2+b2 [3792 B] Get: 166 http://deb.debian.org/debian forky/main arm64 libboost-coroutine1.83.0 arm64 1.83.0-5 [235 kB] Get: 167 http://deb.debian.org/debian forky/main arm64 libboost-coroutine1.83-dev arm64 1.83.0-5 [237 kB] Get: 168 http://deb.debian.org/debian forky/main arm64 libboost-coroutine-dev arm64 1.83.0.2+b2 [3860 B] Get: 169 http://deb.debian.org/debian forky/main arm64 libboost-date-time-dev arm64 1.83.0.2+b2 [3584 B] Get: 170 http://deb.debian.org/debian forky/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 171 http://deb.debian.org/debian forky/main arm64 libboost-exception1.83-dev arm64 1.83.0-5 [230 kB] Get: 172 http://deb.debian.org/debian forky/main arm64 libboost-exception-dev arm64 1.83.0.2+b2 [3572 B] Get: 173 http://deb.debian.org/debian forky/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-5 [273 kB] Get: 174 http://deb.debian.org/debian forky/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-5 [293 kB] Get: 175 http://deb.debian.org/debian forky/main arm64 libboost-fiber1.83.0 arm64 1.83.0-5 [253 kB] Get: 176 http://deb.debian.org/debian forky/main arm64 libboost-fiber1.83-dev arm64 1.83.0-5 [265 kB] Get: 177 http://deb.debian.org/debian forky/main arm64 libboost-fiber-dev arm64 1.83.0.2+b2 [4016 B] Get: 178 http://deb.debian.org/debian forky/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B] Get: 179 http://deb.debian.org/debian forky/main arm64 libboost-graph1.83.0 arm64 1.83.0-5 [342 kB] Get: 180 http://deb.debian.org/debian forky/main arm64 libboost-regex1.83.0 arm64 1.83.0-5 [314 kB] Get: 181 http://deb.debian.org/debian forky/main arm64 libicu-dev arm64 76.1-4 [10.6 MB] Get: 182 http://deb.debian.org/debian forky/main arm64 libboost-regex1.83-dev arm64 1.83.0-5 [335 kB] Get: 183 http://deb.debian.org/debian forky/main arm64 libboost-test1.83.0 arm64 1.83.0-5 [438 kB] Get: 184 http://deb.debian.org/debian forky/main arm64 libboost-test1.83-dev arm64 1.83.0-5 [527 kB] Get: 185 http://deb.debian.org/debian forky/main arm64 libboost-graph1.83-dev arm64 1.83.0-5 [373 kB] Get: 186 http://deb.debian.org/debian forky/main arm64 libboost-graph-dev arm64 1.83.0.2+b2 [3688 B] Get: 187 http://deb.debian.org/debian forky/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10+b1 [126 kB] Get: 188 http://deb.debian.org/debian forky/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10+b1 [54.4 kB] Get: 189 http://deb.debian.org/debian forky/main arm64 librdmacm1t64 arm64 56.1-1+b1 [67.9 kB] Get: 190 http://deb.debian.org/debian forky/main arm64 libfabric1 arm64 2.1.0-1.1 [548 kB] Get: 191 http://deb.debian.org/debian forky/main arm64 libhwloc15 arm64 2.12.2-1 [142 kB] Get: 192 http://deb.debian.org/debian forky/main arm64 libmunge2 arm64 0.5.16-1 [19.2 kB] Get: 193 http://deb.debian.org/debian forky/main arm64 libpciaccess0 arm64 0.17-3+b3 [51.2 kB] Get: 194 http://deb.debian.org/debian forky/main arm64 libxnvctrl0 arm64 535.171.04-1+b2 [14.0 kB] Get: 195 http://deb.debian.org/debian forky/main arm64 ocl-icd-libopencl1 arm64 2.3.4-1 [42.2 kB] Get: 196 http://deb.debian.org/debian forky/main arm64 libhwloc-plugins arm64 2.12.2-1 [18.1 kB] Get: 197 http://deb.debian.org/debian forky/main arm64 libpmix2t64 arm64 6.0.0+really5.0.8-1 [574 kB] Get: 198 http://deb.debian.org/debian forky/main arm64 libibumad3 arm64 56.1-1+b1 [29.3 kB] Get: 199 http://deb.debian.org/debian forky/main arm64 libibmad5 arm64 56.1-1+b1 [42.8 kB] Get: 200 http://deb.debian.org/debian forky/main arm64 libucx0 arm64 1.19.0+ds-1 [1081 kB] Get: 201 http://deb.debian.org/debian forky/main arm64 libopenmpi40 arm64 5.0.8-10+b1 [2104 kB] Get: 202 http://deb.debian.org/debian forky/main arm64 libboost-mpi1.83.0 arm64 1.83.0-5 [268 kB] Get: 203 http://deb.debian.org/debian forky/main arm64 libboost-graph-parallel1.83.0 arm64 1.83.0-5 [276 kB] Get: 204 http://deb.debian.org/debian forky/main arm64 libboost-graph-parallel1.83-dev arm64 1.83.0-5 [284 kB] Get: 205 http://deb.debian.org/debian forky/main arm64 libboost-graph-parallel-dev arm64 1.83.0.2+b2 [3716 B] Get: 206 http://deb.debian.org/debian forky/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-5 [261 kB] Get: 207 http://deb.debian.org/debian forky/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 208 http://deb.debian.org/debian forky/main arm64 libboost-json1.83.0 arm64 1.83.0-5 [348 kB] Get: 209 http://deb.debian.org/debian forky/main arm64 libboost-json1.83-dev arm64 1.83.0-5 [372 kB] Get: 210 http://deb.debian.org/debian forky/main arm64 libboost-json-dev arm64 1.83.0.2+b2 [3696 B] Get: 211 http://deb.debian.org/debian forky/main arm64 libboost-locale1.83.0 arm64 1.83.0-5 [441 kB] Get: 212 http://deb.debian.org/debian forky/main arm64 libboost-locale1.83-dev arm64 1.83.0-5 [543 kB] Get: 213 http://deb.debian.org/debian forky/main arm64 libboost-locale-dev arm64 1.83.0.2+b2 [3916 B] Get: 214 http://deb.debian.org/debian forky/main arm64 libboost-log1.83.0 arm64 1.83.0-5 [644 kB] Get: 215 http://deb.debian.org/debian forky/main arm64 libboost-log1.83-dev arm64 1.83.0-5 [850 kB] Get: 216 http://deb.debian.org/debian forky/main arm64 libboost-log-dev arm64 1.83.0.2+b2 [3788 B] Get: 217 http://deb.debian.org/debian forky/main arm64 libboost-math1.83.0 arm64 1.83.0-5 [471 kB] Get: 218 http://deb.debian.org/debian forky/main arm64 libboost-math1.83-dev arm64 1.83.0-5 [536 kB] Get: 219 http://deb.debian.org/debian forky/main arm64 libboost-math-dev arm64 1.83.0.2+b2 [3784 B] Get: 220 http://deb.debian.org/debian forky/main arm64 openmpi-common all 5.0.8-10 [97.5 kB] Get: 221 http://deb.debian.org/debian forky/main arm64 libnl-3-dev arm64 3.11.0-2 [104 kB] Get: 222 http://deb.debian.org/debian forky/main arm64 libnl-route-3-dev arm64 3.11.0-2 [210 kB] Get: 223 http://deb.debian.org/debian forky/main arm64 libibverbs-dev arm64 56.1-1+b1 [649 kB] Get: 224 http://deb.debian.org/debian forky/main arm64 libnuma-dev arm64 2.0.19-1 [37.6 kB] Get: 225 http://deb.debian.org/debian forky/main arm64 libltdl7 arm64 2.5.4-5 [415 kB] Get: 226 http://deb.debian.org/debian forky/main arm64 libltdl-dev arm64 2.5.4-5 [168 kB] Get: 227 http://deb.debian.org/debian forky/main arm64 libhwloc-dev arm64 2.12.2-1 [239 kB] Get: 228 http://deb.debian.org/debian forky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 229 http://deb.debian.org/debian forky/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10+b1 [102 kB] Get: 230 http://deb.debian.org/debian forky/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10+b1 [60.4 kB] Get: 231 http://deb.debian.org/debian forky/main arm64 libevent-dev arm64 2.1.12-stable-10+b1 [304 kB] Get: 232 http://deb.debian.org/debian forky/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 233 http://deb.debian.org/debian forky/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 234 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 235 http://deb.debian.org/debian forky/main arm64 openmpi-bin arm64 5.0.8-10+b1 [184 kB] Get: 236 http://deb.debian.org/debian forky/main arm64 libopenmpi-dev arm64 5.0.8-10+b1 [1090 kB] Get: 237 http://deb.debian.org/debian forky/main arm64 mpi-default-dev arm64 1.19 [3432 B] Get: 238 http://deb.debian.org/debian forky/main arm64 libboost-mpi1.83-dev arm64 1.83.0-5 [291 kB] Get: 239 http://deb.debian.org/debian forky/main arm64 libboost-mpi-dev arm64 1.83.0.2+b2 [3668 B] Get: 240 http://deb.debian.org/debian forky/main arm64 libboost-python1.83.0 arm64 1.83.0-5 [296 kB] Get: 241 http://deb.debian.org/debian forky/main arm64 mpi-default-bin arm64 1.19 [2640 B] Get: 242 http://deb.debian.org/debian forky/main arm64 libboost-mpi-python1.83.0 arm64 1.83.0-5 [343 kB] Get: 243 http://deb.debian.org/debian forky/main arm64 libboost-mpi-python1.83-dev arm64 1.83.0-5 [237 kB] Get: 244 http://deb.debian.org/debian forky/main arm64 libboost-mpi-python-dev arm64 1.83.0.2+b2 [3700 B] Get: 245 http://deb.debian.org/debian forky/main arm64 libboost-nowide1.83.0 arm64 1.83.0-5 [234 kB] Get: 246 http://deb.debian.org/debian forky/main arm64 libboost-nowide1.83-dev arm64 1.83.0-5 [236 kB] Get: 247 http://deb.debian.org/debian forky/main arm64 libboost-nowide-dev arm64 1.83.0.2+b2 [3660 B] Get: 248 http://deb.debian.org/debian forky/main arm64 libboost-numpy1.83.0 arm64 1.83.0-5 [241 kB] Get: 249 http://deb.debian.org/debian forky/main arm64 libboost-numpy1.83-dev arm64 1.83.0-5 [246 kB] Get: 250 http://deb.debian.org/debian forky/main arm64 libboost-numpy-dev arm64 1.83.0.2+b2 [3632 B] Get: 251 http://deb.debian.org/debian forky/main arm64 libboost-program-options1.83.0 arm64 1.83.0-5 [331 kB] Get: 252 http://deb.debian.org/debian forky/main arm64 libboost-program-options1.83-dev arm64 1.83.0-5 [369 kB] Get: 253 http://deb.debian.org/debian forky/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B] Get: 254 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.8-1 [2057 kB] Get: 255 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.3-1 [150 kB] Get: 256 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.8-1 [5020 kB] Get: 257 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 258 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.8-1 [505 kB] Get: 259 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-7 [27.6 kB] Get: 260 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 261 http://deb.debian.org/debian forky/main arm64 libboost-python1.83-dev arm64 1.83.0-5 [322 kB] Get: 262 http://deb.debian.org/debian forky/main arm64 libboost-python-dev arm64 1.83.0.2+b2 [3880 B] Get: 263 http://deb.debian.org/debian forky/main arm64 libboost-random1.83.0 arm64 1.83.0-5 [238 kB] Get: 264 http://deb.debian.org/debian forky/main arm64 libboost-random1.83-dev arm64 1.83.0-5 [241 kB] Get: 265 http://deb.debian.org/debian forky/main arm64 libboost-random-dev arm64 1.83.0.2+b2 [3584 B] Get: 266 http://deb.debian.org/debian forky/main arm64 libboost-regex-dev arm64 1.83.0.2+b2 [3852 B] Get: 267 http://deb.debian.org/debian forky/main arm64 libboost-serialization-dev arm64 1.83.0.2+b2 [3816 B] Get: 268 http://deb.debian.org/debian forky/main arm64 libboost-stacktrace1.83.0 arm64 1.83.0-5 [277 kB] Get: 269 http://deb.debian.org/debian forky/main arm64 libboost-stacktrace1.83-dev arm64 1.83.0-5 [245 kB] Get: 270 http://deb.debian.org/debian forky/main arm64 libboost-stacktrace-dev arm64 1.83.0.2+b2 [3580 B] Get: 271 http://deb.debian.org/debian forky/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B] Get: 272 http://deb.debian.org/debian forky/main arm64 libboost-test-dev arm64 1.83.0.2+b2 [3620 B] Get: 273 http://deb.debian.org/debian forky/main arm64 libboost-thread-dev arm64 1.83.0.2+b2 [3616 B] Get: 274 http://deb.debian.org/debian forky/main arm64 libboost-timer1.83.0 arm64 1.83.0-5 [235 kB] Get: 275 http://deb.debian.org/debian forky/main arm64 libboost-timer1.83-dev arm64 1.83.0-5 [237 kB] Get: 276 http://deb.debian.org/debian forky/main arm64 libboost-timer-dev arm64 1.83.0.2+b2 [3712 B] Get: 277 http://deb.debian.org/debian forky/main arm64 libboost1.83-tools-dev arm64 1.83.0-5 [1408 kB] Get: 278 http://deb.debian.org/debian forky/main arm64 libboost-tools-dev arm64 1.83.0.2+b2 [3764 B] Get: 279 http://deb.debian.org/debian forky/main arm64 libboost-type-erasure1.83.0 arm64 1.83.0-5 [245 kB] Get: 280 http://deb.debian.org/debian forky/main arm64 libboost-type-erasure1.83-dev arm64 1.83.0-5 [250 kB] Get: 281 http://deb.debian.org/debian forky/main arm64 libboost-type-erasure-dev arm64 1.83.0.2+b2 [3676 B] Get: 282 http://deb.debian.org/debian forky/main arm64 libboost-url1.83.0 arm64 1.83.0-5 [328 kB] Get: 283 http://deb.debian.org/debian forky/main arm64 libboost-url1.83-dev arm64 1.83.0-5 [423 kB] Get: 284 http://deb.debian.org/debian forky/main arm64 libboost-url-dev arm64 1.83.0.2+b2 [3720 B] Get: 285 http://deb.debian.org/debian forky/main arm64 libboost-wave1.83.0 arm64 1.83.0-5 [416 kB] Get: 286 http://deb.debian.org/debian forky/main arm64 libboost-wave1.83-dev arm64 1.83.0-5 [492 kB] Get: 287 http://deb.debian.org/debian forky/main arm64 libboost-wave-dev arm64 1.83.0.2+b2 [3616 B] Get: 288 http://deb.debian.org/debian forky/main arm64 libboost-all-dev arm64 1.83.0.2+b2 [3924 B] Get: 289 http://deb.debian.org/debian forky/main arm64 libcups2t64 arm64 2.4.14-1 [234 kB] Get: 290 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 291 http://deb.debian.org/debian forky/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 292 http://deb.debian.org/debian forky/main arm64 libdouble-conversion3 arm64 3.3.1-2 [37.5 kB] Get: 293 http://deb.debian.org/debian forky/main arm64 libglvnd0 arm64 1.7.0-1+b2 [41.6 kB] Get: 294 http://deb.debian.org/debian forky/main arm64 libllvm19 arm64 1:19.1.7-7 [23.2 MB] Get: 295 http://deb.debian.org/debian forky/main arm64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get: 296 http://deb.debian.org/debian forky/main arm64 libsensors5 arm64 1:3.6.2-2 [36.4 kB] Get: 297 http://deb.debian.org/debian forky/main arm64 libx11-xcb1 arm64 2:1.8.12-1 [247 kB] Get: 298 http://deb.debian.org/debian forky/main arm64 libxcb-dri3-0 arm64 1.17.0-2+b1 [107 kB] Get: 299 http://deb.debian.org/debian forky/main arm64 libxcb-present0 arm64 1.17.0-2+b1 [106 kB] Get: 300 http://deb.debian.org/debian forky/main arm64 libxcb-randr0 arm64 1.17.0-2+b1 [117 kB] Get: 301 http://deb.debian.org/debian forky/main arm64 libxcb-sync1 arm64 1.17.0-2+b1 [109 kB] Get: 302 http://deb.debian.org/debian forky/main arm64 libxcb-xfixes0 arm64 1.17.0-2+b1 [110 kB] Get: 303 http://deb.debian.org/debian forky/main arm64 libxshmfence1 arm64 1.3.3-1 [11.1 kB] Get: 304 http://deb.debian.org/debian forky/main arm64 mesa-libgallium arm64 25.2.4-1 [10.3 MB] Get: 305 http://deb.debian.org/debian forky/main arm64 libgbm1 arm64 25.2.4-1 [45.3 kB] Get: 306 http://deb.debian.org/debian forky/main arm64 libwayland-client0 arm64 1.24.0-2+b1 [27.5 kB] Get: 307 http://deb.debian.org/debian forky/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 308 http://deb.debian.org/debian forky/main arm64 libegl-mesa0 arm64 25.2.4-1 [114 kB] Get: 309 http://deb.debian.org/debian forky/main arm64 libegl1 arm64 1.7.0-1+b2 [34.0 kB] Get: 310 http://deb.debian.org/debian forky/main arm64 libxcb-glx0 arm64 1.17.0-2+b1 [123 kB] Get: 311 http://deb.debian.org/debian forky/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b4 [19.2 kB] Get: 312 http://deb.debian.org/debian forky/main arm64 libvulkan1 arm64 1.4.321.0-1 [130 kB] Get: 313 http://deb.debian.org/debian forky/main arm64 libgl1-mesa-dri arm64 25.2.4-1 [46.7 kB] Get: 314 http://deb.debian.org/debian forky/main arm64 libglx-mesa0 arm64 25.2.4-1 [108 kB] Get: 315 http://deb.debian.org/debian forky/main arm64 libglx0 arm64 1.7.0-1+b2 [31.1 kB] Get: 316 http://deb.debian.org/debian forky/main arm64 libgl1 arm64 1.7.0-1+b2 [90.9 kB] Get: 317 http://deb.debian.org/debian forky/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 318 http://deb.debian.org/debian forky/main arm64 x11proto-dev all 2024.1-1 [603 kB] Get: 319 http://deb.debian.org/debian forky/main arm64 libxau-dev arm64 1:1.0.11-1 [23.9 kB] Get: 320 http://deb.debian.org/debian forky/main arm64 libxdmcp-dev arm64 1:1.1.5-1 [44.2 kB] Get: 321 http://deb.debian.org/debian forky/main arm64 xtrans-dev all 1.6.0-1 [93.5 kB] Get: 322 http://deb.debian.org/debian forky/main arm64 libxcb1-dev arm64 1.17.0-2+b1 [182 kB] Get: 323 http://deb.debian.org/debian forky/main arm64 libx11-dev arm64 2:1.8.12-1 [883 kB] Get: 324 http://deb.debian.org/debian forky/main arm64 libglx-dev arm64 1.7.0-1+b2 [15.8 kB] Get: 325 http://deb.debian.org/debian forky/main arm64 libgl-dev arm64 1.7.0-1+b2 [101 kB] Get: 326 http://deb.debian.org/debian forky/main arm64 libegl-dev arm64 1.7.0-1+b2 [19.5 kB] Get: 327 http://deb.debian.org/debian forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 328 http://deb.debian.org/debian forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 329 http://deb.debian.org/debian forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 330 http://deb.debian.org/debian forky/main arm64 pkg-config arm64 1.8.1-4 [14.0 kB] Get: 331 http://deb.debian.org/debian forky/main arm64 libeigen3-dev all 3.4.0-5 [1034 kB] Get: 332 http://deb.debian.org/debian forky/main arm64 libevdev2 arm64 1.13.4+dfsg-1 [30.4 kB] Get: 333 http://deb.debian.org/debian forky/main arm64 libfftw3-double3 arm64 3.3.10-2+b1 [337 kB] Get: 334 http://deb.debian.org/debian forky/main arm64 libfftw3-long3 arm64 3.3.10-2+b1 [546 kB] Get: 335 http://deb.debian.org/debian forky/main arm64 libfftw3-single3 arm64 3.3.10-2+b1 [517 kB] Get: 336 http://deb.debian.org/debian forky/main arm64 libfftw3-bin arm64 3.3.10-2+b1 [44.3 kB] Get: 337 http://deb.debian.org/debian forky/main arm64 libfftw3-dev arm64 3.3.10-2+b1 [1280 kB] Get: 338 http://deb.debian.org/debian forky/main arm64 libfribidi0 arm64 1.0.16-3 [26.5 kB] Get: 339 http://deb.debian.org/debian forky/main arm64 libgpg-error0 arm64 1.56-2 [84.0 kB] Get: 340 http://deb.debian.org/debian forky/main arm64 libgcrypt20 arm64 1.11.2-2 [772 kB] Get: 341 http://deb.debian.org/debian forky/main arm64 libglib2.0-0t64 arm64 2.86.0-5 [1434 kB] Get: 342 http://deb.debian.org/debian forky/main arm64 libopengl0 arm64 1.7.0-1+b2 [32.1 kB] Get: 343 http://deb.debian.org/debian forky/main arm64 libglu1-mesa arm64 9.0.2-1.1+b3 [162 kB] Get: 344 http://deb.debian.org/debian forky/main arm64 libopengl-dev arm64 1.7.0-1+b2 [5376 B] Get: 345 http://deb.debian.org/debian forky/main arm64 libglu1-mesa-dev arm64 9.0.2-1.1+b3 [203 kB] Get: 346 http://deb.debian.org/debian forky/main arm64 libgraphite2-3 arm64 1.3.14-11 [70.8 kB] Get: 347 http://deb.debian.org/debian forky/main arm64 libgudev-1.0-0 arm64 238-7 [13.9 kB] Get: 348 http://deb.debian.org/debian forky/main arm64 libharfbuzz0b arm64 12.1.0-1 [486 kB] Get: 349 http://deb.debian.org/debian forky/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 350 http://deb.debian.org/debian forky/main arm64 libimagequant0 arm64 4.4.0-3 [216 kB] Get: 351 http://deb.debian.org/debian forky/main arm64 libwacom-common all 2.16.1-1 [112 kB] Get: 352 http://deb.debian.org/debian forky/main arm64 libwacom9 arm64 2.16.1-1 [25.6 kB] Get: 353 http://deb.debian.org/debian forky/main arm64 libinput-bin arm64 1.28.1-1 [26.4 kB] Get: 354 http://deb.debian.org/debian forky/main arm64 libmtdev1t64 arm64 1.1.7-1 [22.5 kB] Get: 355 http://deb.debian.org/debian forky/main arm64 libinput10 arm64 1.28.1-1 [129 kB] Get: 356 http://deb.debian.org/debian forky/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 357 http://deb.debian.org/debian forky/main arm64 libjbig-dev arm64 2.1-6.1+b2 [30.5 kB] Get: 358 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Get: 359 http://deb.debian.org/debian forky/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Get: 360 http://deb.debian.org/debian forky/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 361 http://deb.debian.org/debian forky/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 362 http://deb.debian.org/debian forky/main arm64 liblerc-dev arm64 4.0.0+ds-5 [164 kB] Get: 363 http://deb.debian.org/debian forky/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Get: 364 http://deb.debian.org/debian forky/main arm64 libmd4c0 arm64 0.5.2-2+b1 [46.1 kB] Get: 365 http://deb.debian.org/debian forky/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [189 kB] Get: 366 http://deb.debian.org/debian forky/main arm64 libopenmm8.1 arm64 8.1.2+dfsg-12 [886 kB] Get: 367 http://deb.debian.org/debian forky/main arm64 libopenmm-dev arm64 8.1.2+dfsg-12 [326 kB] Get: 368 http://deb.debian.org/debian forky/main arm64 libopenmm-plugins arm64 8.1.2+dfsg-12 [1181 kB] Get: 369 http://deb.debian.org/debian forky/main arm64 libpcre2-16-0 arm64 10.46-1 [247 kB] Get: 370 http://deb.debian.org/debian forky/main arm64 libpng-dev arm64 1.6.50-1 [361 kB] Get: 371 http://deb.debian.org/debian forky/main arm64 libqhull-r8.0 arm64 2020.2-7 [229 kB] Get: 372 http://deb.debian.org/debian forky/main arm64 shared-mime-info arm64 2.4-5+b3 [755 kB] Get: 373 http://deb.debian.org/debian forky/main arm64 libqt5core5t64 arm64 5.15.17+dfsg-4 [1809 kB] Get: 374 http://deb.debian.org/debian forky/main arm64 libqt5concurrent5t64 arm64 5.15.17+dfsg-4 [45.3 kB] Get: 375 http://deb.debian.org/debian forky/main arm64 libqt5dbus5t64 arm64 5.15.17+dfsg-4 [204 kB] Get: 376 http://deb.debian.org/debian forky/main arm64 libqt5network5t64 arm64 5.15.17+dfsg-4 [651 kB] Get: 377 http://deb.debian.org/debian forky/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Get: 378 http://deb.debian.org/debian forky/main arm64 libxcb-icccm4 arm64 0.4.2-1 [27.2 kB] Get: 379 http://deb.debian.org/debian forky/main arm64 libxcb-util1 arm64 0.4.1-1 [23.6 kB] Get: 380 http://deb.debian.org/debian forky/main arm64 libxcb-image0 arm64 0.4.0-2+b2 [21.9 kB] Get: 381 http://deb.debian.org/debian forky/main arm64 libxcb-keysyms1 arm64 0.4.1-1 [16.8 kB] Get: 382 http://deb.debian.org/debian forky/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 383 http://deb.debian.org/debian forky/main arm64 libxcb-render-util0 arm64 0.3.10-1 [18.5 kB] Get: 384 http://deb.debian.org/debian forky/main arm64 libxcb-shape0 arm64 1.17.0-2+b1 [106 kB] Get: 385 http://deb.debian.org/debian forky/main arm64 libxcb-xinerama0 arm64 1.17.0-2+b1 [105 kB] Get: 386 http://deb.debian.org/debian forky/main arm64 libxcb-xinput0 arm64 1.17.0-2+b1 [130 kB] Get: 387 http://deb.debian.org/debian forky/main arm64 libxcb-xkb1 arm64 1.17.0-2+b1 [129 kB] Get: 388 http://deb.debian.org/debian forky/main arm64 xkb-data all 2.42-1 [790 kB] Get: 389 http://deb.debian.org/debian forky/main arm64 libxkbcommon0 arm64 1.7.0-2.1 [106 kB] Get: 390 http://deb.debian.org/debian forky/main arm64 libxkbcommon-x11-0 arm64 1.7.0-2.1 [15.3 kB] Get: 391 http://deb.debian.org/debian forky/main arm64 libqt5gui5t64 arm64 5.15.17+dfsg-4 [3256 kB] Get: 392 http://deb.debian.org/debian forky/main arm64 libqt5widgets5t64 arm64 5.15.17+dfsg-4 [2266 kB] Get: 393 http://deb.debian.org/debian forky/main arm64 libqt5xml5t64 arm64 5.15.17+dfsg-4 [120 kB] Get: 394 http://deb.debian.org/debian forky/main arm64 libqt5designer5 arm64 5.15.17-3 [2720 kB] Get: 395 http://deb.debian.org/debian forky/main arm64 libqt5sql5t64 arm64 5.15.17+dfsg-4 [122 kB] Get: 396 http://deb.debian.org/debian forky/main arm64 libqt5help5 arm64 5.15.17-3 [145 kB] Get: 397 http://deb.debian.org/debian forky/main arm64 libqt5opengl5t64 arm64 5.15.17+dfsg-4 [144 kB] Get: 398 http://deb.debian.org/debian forky/main arm64 libqt5printsupport5t64 arm64 5.15.17+dfsg-4 [198 kB] Get: 399 http://deb.debian.org/debian forky/main arm64 libqt5test5t64 arm64 5.15.17+dfsg-4 [140 kB] Get: 400 http://deb.debian.org/debian forky/main arm64 libvulkan-dev arm64 1.4.321.0-1 [1672 kB] Get: 401 http://deb.debian.org/debian forky/main arm64 libxext-dev arm64 2:1.3.4-1+b3 [105 kB] Get: 402 http://deb.debian.org/debian forky/main arm64 qt5-qmake-bin arm64 5.15.17+dfsg-4 [922 kB] Get: 403 http://deb.debian.org/debian forky/main arm64 qtchooser arm64 66-2+b1 [24.5 kB] Get: 404 http://deb.debian.org/debian forky/main arm64 qt5-qmake arm64 5.15.17+dfsg-4 [225 kB] Get: 405 http://deb.debian.org/debian forky/main arm64 qtbase5-dev-tools arm64 5.15.17+dfsg-4 [712 kB] Get: 406 http://deb.debian.org/debian forky/main arm64 qtbase5-dev arm64 5.15.17+dfsg-4 [1122 kB] Get: 407 http://deb.debian.org/debian forky/main arm64 libqt5opengl5-dev arm64 5.15.17+dfsg-4 [52.3 kB] Get: 408 http://deb.debian.org/debian forky/main arm64 libraqm0 arm64 0.10.3-1 [13.6 kB] Get: 409 http://deb.debian.org/debian forky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 410 http://deb.debian.org/debian forky/main arm64 libsharpyuv-dev arm64 1.5.0-0.1 [118 kB] Get: 411 http://deb.debian.org/debian forky/main arm64 libsqlite3-dev arm64 3.46.1-8 [1098 kB] Get: 412 http://deb.debian.org/debian forky/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 413 http://deb.debian.org/debian forky/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 414 http://deb.debian.org/debian forky/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 415 http://deb.debian.org/debian forky/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 416 http://deb.debian.org/debian forky/main arm64 libwebpdecoder3 arm64 1.5.0-0.1 [182 kB] Get: 417 http://deb.debian.org/debian forky/main arm64 libwebp-dev arm64 1.5.0-0.1 [406 kB] Get: 418 http://deb.debian.org/debian forky/main arm64 libtiff6 arm64 4.7.1-1 [334 kB] Get: 419 http://deb.debian.org/debian forky/main arm64 libtiffxx6 arm64 4.7.1-1 [174 kB] Get: 420 http://deb.debian.org/debian forky/main arm64 libtiff-dev arm64 4.7.1-1 [481 kB] Get: 421 http://deb.debian.org/debian forky/main arm64 libxslt1.1 arm64 1.1.43-0.2 [145 kB] Get: 422 http://deb.debian.org/debian forky/main arm64 libzopfli1 arm64 1.0.3-3 [95.2 kB] Get: 423 http://deb.debian.org/debian forky/main arm64 python-matplotlib-data all 3.10.1+dfsg1-5 [2737 kB] Get: 424 http://deb.debian.org/debian forky/main arm64 python3-attr all 25.4.0-1 [73.1 kB] Get: 425 http://deb.debian.org/debian forky/main arm64 python3-brotli arm64 1.1.0-2+b7 [300 kB] Get: 426 http://deb.debian.org/debian forky/main arm64 python3-contourpy arm64 1.3.1-2 [191 kB] Get: 427 http://deb.debian.org/debian forky/main arm64 python3-cycler all 0.12.1-2 [9616 B] Get: 428 http://deb.debian.org/debian forky/main arm64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 429 http://deb.debian.org/debian forky/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 430 http://deb.debian.org/debian forky/main arm64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get: 431 http://deb.debian.org/debian forky/main arm64 python3-fs all 2.4.16-8 [95.2 kB] Get: 432 http://deb.debian.org/debian forky/main arm64 python3-lxml arm64 6.0.2-1 [1260 kB] Get: 433 http://deb.debian.org/debian forky/main arm64 python3-lz4 arm64 4.4.4+dfsg-3 [25.5 kB] Get: 434 http://deb.debian.org/debian forky/main arm64 python3-scipy arm64 1.15.3-1.1 [15.1 MB] Get: 435 http://deb.debian.org/debian forky/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 436 http://deb.debian.org/debian forky/main arm64 python3-sympy all 1.14.0-2 [4228 kB] Get: 437 http://deb.debian.org/debian forky/main arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 438 http://deb.debian.org/debian forky/main arm64 python3-unicodedata2 arm64 16.0.0+ds-1 [322 kB] Get: 439 http://deb.debian.org/debian forky/main arm64 python3-zopfli arm64 0.2.3.post1-1 [10.2 kB] Get: 440 http://deb.debian.org/debian forky/main arm64 unicode-data all 16.0.0-1 [9197 kB] Get: 441 http://deb.debian.org/debian forky/main arm64 python3-fonttools arm64 4.57.0-2 [1368 kB] Get: 442 http://deb.debian.org/debian forky/main arm64 python3-kiwisolver arm64 1.4.7-3+b1 [57.8 kB] Get: 443 http://deb.debian.org/debian forky/main arm64 python3-pil arm64 11.3.0-1 [507 kB] Get: 444 http://deb.debian.org/debian forky/main arm64 python3.13-tk arm64 3.13.8-1 [106 kB] Get: 445 http://deb.debian.org/debian forky/main arm64 python3-tk arm64 3.13.5-1 [9604 B] Get: 446 http://deb.debian.org/debian forky/main arm64 python3-pil.imagetk arm64 11.3.0-1 [81.3 kB] Get: 447 http://deb.debian.org/debian forky/main arm64 python3-pyparsing all 3.1.3-1 [148 kB] Get: 448 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 449 http://deb.debian.org/debian forky/main arm64 python3-matplotlib arm64 3.10.1+dfsg1-5 [23.7 MB] Get: 450 http://deb.debian.org/debian forky/main arm64 python3-pyqt5.sip arm64 12.17.1-1 [59.3 kB] Get: 451 http://deb.debian.org/debian forky/main arm64 python3-pyqt5 arm64 5.15.11+dfsg-3 [2294 kB] Get: 452 http://deb.debian.org/debian forky/main arm64 voronota arm64 1.29.4415+ds-1 [2467 kB] Fetched 400 MB in 2s (225 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.8-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.8-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.8-1_arm64.deb ... Unpacking python3.13-minimal (3.13.8-1) ... Setting up libpython3.13-minimal:arm64 (3.13.8-1) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20334 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.8-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.8-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.8-1_arm64.deb ... Unpacking python3.13 (3.13.8-1) ... 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Setting up libxss1:arm64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:arm64 (2.15.0-2.4) ... Setting up libboost-system1.83-dev:arm64 (1.83.0-5) ... Setting up libsm6:arm64 (2:1.2.6-1) ... Setting up libpython3.13-stdlib:arm64 (3.13.8-1) ... Setting up libfftw3-dev:arm64 (3.3.10-2+b1) ... Setting up libicu-dev:arm64 (76.1-4) ... Setting up libavahi-client3:arm64 (0.8-17) ... Setting up libboost-timer-dev:arm64 (1.83.0.2+b2) ... Setting up libgudev-1.0-0:arm64 (238-7) ... Setting up gfortran-15 (15.2.0-4) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libdrm-amdgpu1:arm64 (2.4.125-2) ... Setting up libpython3.13:arm64 (3.13.8-1) ... Setting up libgnutls30t64:arm64 (3.8.10-2) ... Setting up libboost-thread1.83-dev:arm64 (1.83.0-5) ... Setting up mesa-libgallium:arm64 (25.2.4-1) ... Setting up libibverbs1:arm64 (56.1-1+b1) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b4) ... Setting up libboost-json1.83-dev:arm64 (1.83.0-5) ... Setting up libxcb1-dev:arm64 (1.17.0-2+b1) ... Setting up libboost-locale1.83-dev:arm64 (1.83.0-5) ... Setting up libgbm1:arm64 (25.2.4-1) ... Setting up ibverbs-providers:arm64 (56.1-1+b1) ... Setting up python3.13 (3.13.8-1) ... Setting up libwacom9:arm64 (2.16.1-1) ... Setting up openssh-client (1:10.0p1-8) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.17-1) ... Setting up libboost-system-dev:arm64 (1.83.0.2+b2) ... Setting up libgl1-mesa-dri:arm64 (25.2.4-1) ... Setting up libboost-type-erasure1.83-dev:arm64 (1.83.0-5) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libx11-dev:arm64 (2:1.8.12-1) ... Setting up libboost-url1.83-dev:arm64 (1.83.0-5) ... Setting up libboost-locale-dev:arm64 (1.83.0.2+b2) ... Setting up python3 (3.13.7-1) ... Setting up libboost-filesystem1.83-dev:arm64 (1.83.0-5) ... Setting up libboost-exception-dev:arm64 (1.83.0.2+b2) ... Setting up libhwloc-plugins:arm64 (2.12.2-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.13-tk (3.13.8-1) ... Setting up python3-platformdirs (4.4.0-1) ... Setting up libboost-container-dev:arm64 (1.83.0.2+b2) ... Setting up python3-zopfli (0.2.3.post1-1) ... Setting up libboost-type-erasure-dev:arm64 (1.83.0.2+b2) ... Setting up libinput-bin (1.28.1-1) ... Setting up libboost-context1.83-dev:arm64 (1.83.0-5) ... Setting up python3-fs (2.4.16-8) ... Setting up libnl-route-3-dev:arm64 (3.11.0-2) ... Setting up libboost-coroutine1.83-dev:arm64 (1.83.0-5) ... Setting up libqt5core5t64:arm64 (5.15.17+dfsg-4) ... Setting up python3-decorator (5.2.1-2) ... Setting up libegl-mesa0:arm64 (25.2.4-1) ... Setting up python3-packaging (25.0-1) ... Setting up python3-pyparsing (3.1.3-1) ... Setting up libboost-fiber1.83-dev:arm64 (1.83.0-5) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... 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Setting up libqt5printsupport5t64:arm64 (5.15.17+dfsg-4) ... Setting up libopenmpi40:arm64 (5.0.8-10+b1) ... Setting up libqt5designer5:arm64 (5.15.17-3) ... Setting up qtbase5-dev:arm64 (5.15.17+dfsg-4) ... Setting up libboost-mpi1.83.0 (1.83.0-5) ... Setting up openmpi-bin (5.0.8-10+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-pyqt5 (5.15.11+dfsg-3) ... Setting up libboost-graph-parallel1.83.0 (1.83.0-5) ... Setting up libqt5opengl5-dev:arm64 (5.15.17+dfsg-4) ... Setting up mpi-default-bin (1.19) ... Setting up libopenmpi-dev:arm64 (5.0.8-10+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up libboost-graph-parallel1.83-dev (1.83.0-5) ... Setting up libboost-mpi-python1.83.0 (1.83.0-5) ... Setting up libboost-graph-parallel-dev (1.83.0.2+b2) ... Setting up mpi-default-dev (1.19) ... Setting up libboost-mpi1.83-dev (1.83.0-5) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libboost-mpi-python1.83-dev (1.83.0-5) ... Setting up libboost-mpi-python-dev (1.83.0.2+b2) ... Setting up libboost-all-dev (1.83.0.2+b2) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up python3-fonttools (4.57.0-2) ... Setting up python3-matplotlib (3.10.1+dfsg1-5) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/openstructure-2.11.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../openstructure_2.11.1-1_source.changes dpkg-buildpackage: info: source package openstructure dpkg-buildpackage: info: source version 2.11.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/openstructure-2.11.1' dh_auto_configure -- -DOPTIMIZE=ON -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/aarch64-linux-gnu/openmm/plugins cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DOPTIMIZE=ON -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/aarch64-linux-gnu/openmm/plugins .. -- The CXX compiler identification is GNU 15.2.0 -- The C compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Found Python: /usr/bin/python3 (found suitable version "3.13.8", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found OpenGL: /usr/lib/aarch64-linux-gnu/libOpenGL.so -- Found EIGEN: /usr/include/eigen3 (Required is at least version "3.2.0") -- Found SQLITE3: /usr/lib/aarch64-linux-gnu/libsqlite3.so (Required is at least version "3.7.13") -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Found PNG: /usr/lib/aarch64-linux-gnu/libpng.so (found version "1.6.50") -- Found FFTW: /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Found TIFF: /usr/lib/aarch64-linux-gnu/libtiff.so (found version "4.7.1") -- Found OpenMM: /usr/lib/aarch64-linux-gnu/libOpenMM.so -- Searching for python module PyQt5 for /usr/bin/python3 -- Found python module PyQt5 -- Searching for python module PyQt5.sip for /usr/bin/python3 -- Found python module PyQt5.sip -- Found Python: /usr/bin/python3 (found suitable version "3.13.8", minimum required is "3") found components: Interpreter Development Development.Module Development.Embed -- OpenStructure will be built with the following options: Install Prefix (-DPREFIX) : /usr RPath in install (-DUSE_RPATH) : OFF Info support (-DENABLE_INFO) : ON Graphical interface (-DENABLE_GUI) : ON OpenGL support (-DENABLE_GFX) : ON Shader support (-DUSE_SHADER) : OFF SpaceNav Device support (-DENABLE_SPNAV) : OFF OpenMM support (-DENABLE_MM) : ON OpenMM plugins (-DOPEN_MM_PLUGIN_DIR) : /usr/lib/aarch64-linux-gnu/openmm/plugins Parasail alignment library (-DENABLE_PARASAIL) : OFF Optimize (-DOPTIMIZE) : ON Profiling support (-DPROFILE) : OFF Double Precision (-DUSE_DOUBLE_PRECISION) : OFF Compound Lib (-DCOMPOUND_LIB) : NONE TMAlign and TMScore (-DCOMPILE_TMTOOLS) : OFF Static Libraries (-DENABLE_STATIC) : OFF Debian/Ubuntu directory layout (-DUBUNTU_LAYOUT) : ON Hidden object visibility (-DHIDDEN_VISIBILITY) : OFF -- Configuring done (3.5s) -- Generating done (0.5s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/openstructure-2.11.1' dh_auto_build cd obj-aarch64-linux-gnu && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/openstructure-2.11.1 -B/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/base/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/base/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/conop/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake "--color=" make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/db/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/db/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/gfx/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake "--color=" make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/gui/share /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake "--color=" make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/depend make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/gui/share /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake "--color=" make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/bin make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake "--color=" make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/build make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.11.1/modules/base/pymod/__init__.py.in -DOUT_FILE=__init__.py -DALL_ADDITIONAL_MODULES=,\'gui\',\'gfx\',\'img\',\'info\' -P /build/reproducible-path/openstructure-2.11.1/cmake_support/substitute.cmake make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./__init__.py make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gfx/./__init__.py make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/geom/./__init__.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/add_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/add_icon.png make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./__init__.py make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/dng/__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/__init__.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/tests make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/pymod/./py_gfx_obj.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gfx/./py_gfx_obj.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/images/logo-small.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/images/logo-small.png cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./lga.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./lga.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/dng/termuse.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/termuse.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/__init__.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/db/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/db/./__init__.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/dng/superpositiondialog.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/superpositiondialog.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./hbplus.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hbplus.py make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./__init__.py [ 0%] Built target ost_gfx_pymod make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/img/base/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/close_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/dng/init.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/init.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./msms.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./msms.py [ 0%] Built target create_stage [ 0%] Built target gui_images make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/img/alg/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/color_options_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_options_widget.py make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/info/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/pymod/./cleanup.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./cleanup.py [ 0%] Built target ost_db_pymod make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/critical_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/io/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/dng/menu.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/menu.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/color_select_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_select_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./tmtools.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./tmtools.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/alg/./__init__.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' [ 0%] Built target ost_geom_pymod cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/info/./__init__.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/./__init__.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/combo_options_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/combo_options_widget.py [ 0%] Built target subst___init__.py [ 0%] Built target ost_gui_dng_pymod make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./dssp.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dssp.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/./init_context_menu.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_context_menu.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/delete_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png [ 0%] Built target ost_img_alg_pymod make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/mol/base/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/cpk_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/cpk_widget.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./clustalw.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./clustalw.py make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./__init__.py [ 0%] Built target ost_info_pymod make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/seq/base/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/distance_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/./__init__.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./utils.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./utils.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./__init__.py [ 0%] Built target ost_conop_pymod make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./forcefield.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./forcefield.hh make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/./init_menubar.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_menubar.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/pymod/./remote.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./remote.py make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/mm/./__init__.py [ 0%] Built target ost_img_pymod make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/./__init__.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./naccess.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./naccess.py [ 0%] Built target ost_seq_pymod cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/custom_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/custom_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./ff_reader.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./ff_reader.hh make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/scripts /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/./init_spacenav.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_spacenav.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/find_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./views.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./views.py make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./buildingblock.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./buildingblock.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./__init__.py make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/scripts /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/information_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./superpose.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./superpose.py [ 0%] Built target ost_mol_pymod cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./hhblits.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/gradient_editor_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_editor_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/pymod/./antechamber.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/mm/./antechamber.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/./init_splash.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_splash.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.11.1/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.11.1/cmake_support/substitute.cmake cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/pymod/./repository.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./repository.py make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.11.1/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.11.1/cmake_support/substitute.cmake make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/scripts /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/map_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./block_modifiers.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./block_modifiers.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./qsscoring.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./qsscoring.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.11.1/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.11.1/cmake_support/substitute.cmake cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/gradient_info_handler.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_info_handler.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/pymod/./mat.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./mat.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/./trajectory_viewer.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./trajectory_viewer.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./hhblits2.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits2.py [ 0%] Built target ost_io_pymod cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/menubar_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./gromacs_block_modifiers.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./gromacs_block_modifiers.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/scripts /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/gradient_list_model.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_list_model.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./trajectory_analysis.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./trajectory_analysis.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./hhblits3.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits3.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/./helpwidget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./helpwidget.py [ 0%] Built target subst_ost_startup.py make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/rigid_body_manipulator_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/actions /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/actions /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/gradient_preset_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_preset_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./heuristic_block_modifiers.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./heuristic_block_modifiers.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/./table.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./table.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./blast.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./blast.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./structure_analysis.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./structure_analysis.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/pymod/./renumber.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./renumber.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' [ 0%] Built target subst_ost_config cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/selection_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png [ 0%] Built target ost_mol_mm_pymod make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.11.1/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.8 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.11.1/cmake_support/substitute.cmake cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./helix_kinks.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./helix_kinks.py make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/geom/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./cadscore.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./cadscore.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/./gosty_startup.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./gosty_startup.py make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./interaction.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./interaction.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/config /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/config /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build [ 0%] Built target subst_ost make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/actions/ost-compare-ligand-structures /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-ligand-structures cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/hsc_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/hsc_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/pymod/./aaindex.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./aaindex.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/show_sidebar_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./kclust.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./kclust.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./hbond.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./hbond.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/base/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build [ 0%] Built target subst_dng make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/export_helper/vector.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/pymod/aaindex1 /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/aaindex/aaindex1 make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/base/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/config/./base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./base.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./settings.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./settings.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/immutable_gradient_info_handler.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/actions/ost-compare-structures /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./ialign.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./ialign.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/site_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./def.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./def.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./lddt.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./lddt.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./simulation.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./simulation.hh [ 0%] Built target ost_gui_pymod make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/pymod/./settings.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./settings.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/export_helper/generic_property_def.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/config/./config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./config.hh make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./modeller.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./modeller.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/pymod/aaindex2 /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/aaindex/aaindex2 cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./qsscore.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./qsscore.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/actions/ost-compare-structures-legacy /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures-legacy cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/immutable_preset_info_handler.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_preset_info_handler.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/split_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./exc.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./exc.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/pymod/./stutil.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./stutil.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/impl/sequence_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./scoring.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./scoring.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/warning_icon.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/config/./dllexport.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./dllexport.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/pymod/aaindex3 /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/aaindex/aaindex3 cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./mmseqs2.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./mmseqs2.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./observer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./observer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/pymod/./table.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./geom.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./geom.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./chain_mapping.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./chain_mapping.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/pymod/./dockq.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dockq.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/impl/sequence_impl_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/config/./version.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./version.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/init_inspector.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/init_inspector.py [ 0%] Built target actions cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./stereochemistry.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./stereochemistry.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/share/icons/refresh.png /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/refresh.png cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/export_helper/vec_to_list_conv.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/info/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./state_extractor.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./state_extractor.hh [ 0%] Built target ost_seq_alg_pymod cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./mat.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./dockq.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./dockq.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/pymod/./table_selector.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table_selector.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/inspector_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/inspector_widget.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./contact_score.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./contact_score.py [ 0%] Built target ost_bindings_pymod make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/bindings/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./system_creator.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./system_creator.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/pointer_iterator.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh [ 0%] Built target scene_icons make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./topology_creator.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./topology_creator.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/test_utils/compare_files.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/test_utils/compare_files.hh [ 0%] Built target ost_config_headers cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/pymod/./xmlrunner.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./xmlrunner.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/conop/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./info.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./info.hh make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/atom_group.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/db/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./mat2.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat2.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./ligand_scoring.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/map_level_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/map_level_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/bindings/src/./wrap_tmalign.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/preset.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset.py make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/db/src/./sqlite_wrap.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/atom_prop.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/src/./conop.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/conop/./conop.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/impl/sequence_list_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/pymod/./testutils.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./testutils.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./mat3.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat3.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./generic_property.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./generic_property.hh [ 0%] Built target ost_bindings_headers make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./ligand_scoring_base.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_base.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/remote.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/remote.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./info_error.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./info_error.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/atom_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/db/src/./sqlite_conv.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./mat4.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat4.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./index.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./index.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./integrity_error.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./integrity_error.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/src/./processor.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/conop/./processor.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/__init__.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/atom_impl_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/preset_editor_list_model.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_list_model.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./alignment_opts.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./ligand_scoring_scrmsd.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_scrmsd.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/impl/sequence_list_iterator.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./info_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./invalid_handle.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./invalid_handle.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/db/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/db/./module_config.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/src/./amino_acids.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/conop/./amino_acids.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/chain_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./info_impl_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./topology.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./topology.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./ligand_scoring_lddtpli.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_lddtpli.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/./sequence_list.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_list.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./info_handle.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./info_handle.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/db/src/./linear_indexer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/db/./linear_indexer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./clip_alignment.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/chain_impl_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./vec.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/src/./diag.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/conop/./diag.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/preset_editor_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/./sequence_handle.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./ptr_observer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./ptr_observer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./bb_lddt.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./bb_lddt.py [ 0%] Built target ost_base_pymod cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/connector_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/mm/src/./steep.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./steep.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./info_group.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./info_group.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/db/src/./binary_container.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/db/./binary_container.hh make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/img/base/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./conservation.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/src/./model_check.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/conop/./model_check.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./vec2.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec2.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/preset_info_handler.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_info_handler.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/./alignment_handle.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./log.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./log.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/./scoring_base.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./scoring_base.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/src/./heuristic.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/conop/./heuristic.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/raster_image/raster_image.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./vec3.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec3.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/connector_impl_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./contact_prediction_score.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/dispatch.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/db/src/./extract_data_helper.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./vec4.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec4.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/src/./compound.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./info_item.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./info_item.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/preset_list_model.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_list_model.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./log_sink.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./log_sink.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./contact_weight_matrix.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/pymod/stereo_data.json /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/share/openstructure/stereo_data.json cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/./module_config.hh [ 0%] Built target ost_mol_mm_headers make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./vecmat_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./distance_map.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/./sequence_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/./aligned_region.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_region.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/image_state.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/preset_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_widget.py [ 0%] Built target ost_db_headers cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/src/./compound_lib.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./info_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./info_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./profile.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./profile.hh make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/io/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./entropy.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/./aligned_column.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./anisotropic.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/render_mode_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_mode_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./module_config.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./vecmat2_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/./aligned_column_iterator.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./auto_correlate.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/image_state_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./global_align.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/star_parser.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/star_parser.hh [ 0%] Built target ost_mol_alg_pymod cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/./invalid_sequence.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/conop/./module_config.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./dyn_cast.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./dyn_cast.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/dihedral.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./ins_del.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/image_state_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/render_op.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_op.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/star_writer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/star_writer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/src/./rule_based.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/conop/./rule_based.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./vecmat3_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/./views_from_sequences.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./clear.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clear.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./stdint.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./stdint.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/entity_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/image_state_base_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./info_path.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./info_path.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/image_state_def.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/render_options_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_options_widget.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./svd_superpose.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./vecmat4_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/src/./minimal_compound_lib.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/entity_impl_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/base/src/./profile_handle.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/./profile_handle.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./stdint_msc.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./stdint_msc.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/mmcif_info.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./clip_min_max.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./info_set.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./info_set.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./circular_iterator.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/image_state_factory.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/src/./compound_lib_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/scene_observer_impl.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_observer_impl.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./local_align.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./info_visitor.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./info_visitor.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/conop/src/./ring_finder.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/conop/./ring_finder.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./range.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./range.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./info_verbose_visitor.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh [ 0%] Built target ost_seq_headers cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./conjugate.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/fragment_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_writer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./item_type.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./module_config.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh [ 0%] Built target ost_conop_headers make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/gfx/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake "--color=" make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/gui/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/image_state_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/scene_selection_helper.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_selection_helper.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./convolute.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./convolute.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./sec_structure_segments.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/fragment_impl_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./constants.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./constants.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./local_dist_diff_test.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/map_iso_gen.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/io_profile.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/io_profile.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./geom_info_conversion.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./units.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./units.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./correlate.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./correlate.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/tools/tool.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/query_ast.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/simple_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/simple_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/dcd_io.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./composite.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./cross_correlate.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./message.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./message.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/query_ast_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/tools/tool_option_group.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/info/src/./item_type_cast.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type_cast.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./distance_test_common.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/sline_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/sline_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/image_state_visitor.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./platform.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./platform.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./composite2.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/image_state_algorithm.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./density_slice.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/query_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/toolbar_options_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/toolbar_options_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/tools/tool_options.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./string_ref.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./string_ref.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/tools/tool_bar.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./semiglobal_align.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./composite3.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/map_iso_spec.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./distance_rmsd_test.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh [ 0%] Built target ost_info_headers cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./dft.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./dft.hh make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/config /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/config /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/query_impl_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./composite_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/trace_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/trace_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./superpose_frames.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/map_octree.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/tools/selection_tool.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./sequence_identity.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/index.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/index.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./fft.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fft.hh make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'. make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/tube_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/tube_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/octree_isocont.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./composite2_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2_op.hh [ 0%] Built target ost_config cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/residue_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./filter_clashes.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/cartoon_renderer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./fftw_helper.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./composite3_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/type_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/tools/measure_tool.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./pod_vector.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./pod_vector.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./sequence_similarity.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/uniform_color_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/uniform_color_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./aligned_cuboid.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./fill.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fill.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/residue_impl_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/tools/tool_option.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/image_state/value_holder.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/surface_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./fixed_string.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./fixed_string.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./vec_mat_predicates.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/custom_renderer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./subst_weight_matrix.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/visibility_op.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/visibility_op.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./quat.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./quat.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./algorithm.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./algorithm.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/tools/tool_manager.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/pdb_reader.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./filter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./filter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/surface_impl_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./tri_matrix.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./tri_matrix.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./variance_map.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./transform.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./transform.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/cpk_renderer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./circle_mask.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./circle_mask.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/torsion_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./point_cloud.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./point_cloud.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./composite_mask.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./composite_mask.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/line_trace_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/line_trace_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./fourier_filters.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/debug_renderer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./construct_cbeta.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./boost_filesystem_helper.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/geom/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/geom/./module_config.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/impl/torsion_impl_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/tools/tool_options_widget.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./clash_score.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/wireframe_widget.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/wireframe_widget.py cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./atom_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./trajectory_analysis.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/base/src/./paged_array.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/./paged_array.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/simple_renderer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./data_algorithm.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./data_algorithm.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/pymod/scene/query_editor.py /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/query_editor.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/pdb_writer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/tools/manipulator.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./data_observer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./data_observer.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./structure_analysis.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./gaussian.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./atom_handle.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_handle.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/sline_renderer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh [ 0%] Built target ost_base_headers make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh [ 0%] Built target ost_gui_scene_pymod cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./atom_view.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_view.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./data_types.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./data_types.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/sdf_reader.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./pdbize.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh [ 0%] Built target ost_geom_headers cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/tools/tool_options_win.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./hmm_score.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/geom/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./data.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./data.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./bond_handle.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_handle.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/trace_renderer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./gaussian_laplacian.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./adjacency_bitmap.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./debug.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./debug.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/tools/mouse_event.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./bond_table.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_table.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/seq/alg/src/./wrap_parasail.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./wrap_parasail.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./highest_peak_search_3d.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/sdf_writer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o -MF CMakeFiles/ost_geom.dir/mat3.cc.o.d -o CMakeFiles/ost_geom.dir/mat3.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/mat3.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o -MF CMakeFiles/ost_geom.dir/mat2.cc.o.d -o CMakeFiles/ost_geom.dir/mat2.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/mat2.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./dllexport.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./dllexport.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/tools/map_tool.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./contact_overlap.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o -MF CMakeFiles/ost_geom.dir/mat4.cc.o.d -o CMakeFiles/ost_geom.dir/mat4.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/mat4.cc make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/save_entity.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/save_entity.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./chain_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./histogram.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./histogram.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/line_trace_renderer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./extent_iterator.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_iterator.hh [ 0%] Built target ost_seq_alg_headers cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o -MF CMakeFiles/ost_geom.dir/vec3.cc.o.d -o CMakeFiles/ost_geom.dir/vec3.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/vec3.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./domain_find.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/load_entity.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_entity.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/backbone_trace.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./line_iterator.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./chain_handle.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_handle.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat2_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/vecmat2_op.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/entity_detail.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./extent_mask.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_mask.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/base_row.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./similarity_matrix.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./local_sigma_threshold.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./chain_view.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_view.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/load_surface.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_surface.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/entity_renderer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./extent.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./extent.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/background_painter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./accessibility.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./image_factory.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./image_factory.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./mask_image.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/trace_renderer_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./chain_type.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_type.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./image_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./image_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./negate.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./negate.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/pdb_str.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./image_handle_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/connect_renderer_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/conservation_painter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/sdf_str.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_str.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./image_handle.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./normalizer_factory.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/painter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./image_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./image_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/mapped_property.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./chem_class.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_class.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./sec_struct.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/entity_renderer_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/mmcif_str.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_str.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./image_list.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./image_list.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./nonstandard.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./norm.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./image_state_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./chem_type.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_type.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./normalizer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./molck.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./molck.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/secstr_row.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./coord_group.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_group.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/tabulated_trig.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./image_state.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/impl/fast_spheres.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./norm_linear.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./find_membrane.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/mol/omf.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/mol/omf.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./image.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./image.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./coord_source.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_source.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/render_options/render_options.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./entity_to_density.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./inverted_mask.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./inverted_mask.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./in_mem_coord_source.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./map.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./map.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./norm_log.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./biounit.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./biounit.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/load_map.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/load_map.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./mask_base_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./coord_frame.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_frame.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/alg/src/./gdt.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./gdt.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./mask_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./norm_od.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./editor_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./mask_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/image_format.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/image_format.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/render_options/line_render_options.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./power_spectrum.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/render_options/custom_render_options.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./editor_type_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./mask_visitor.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_visitor.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./randomize.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./randomize.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/sequence_model.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/render_options/cpk_render_options.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./mol.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./mol.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./mask.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./mask.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./smooth_mask_image.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/render_options/simple_render_options.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/sequence_row.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh [ 0%] Built target ost_mol_alg_headers cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/render_options/sline_render_options.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./module_config.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./stat.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat3_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/vecmat3_op.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./normalizer_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/render_options/line_trace_render_options.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./entity_handle.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_handle.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/render_options/cartoon_render_options.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/map_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./entity_observer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./stat_accumulator.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./normalizer_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/render_options/trace_render_options.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./stat_min_max.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./entity_observer_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./null_data.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./null_data.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/color_ops/color_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./threshold.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./threshold.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./observable.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./observable.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./transcendentals.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/color_ops/by_element_color_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/tick_painter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./entity_property_mapper.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./paste_impl.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./paste_impl.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/color_ops/by_chain_color_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/title_row.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./entity_view.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_view.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./peak.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./peak.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/color_ops/uniform_color_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./phase.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./phase.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/color_ops/gradient_color_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./physical_units.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./physical_units.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./transform.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./entity_visitor.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/base_view_object.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./pixel_sampling.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./transform_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/color_ops/entity_view_color_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./point_list.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./point_list.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./entity_visitor_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/main_thread_runner.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./alg_transform.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./handle_type_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./ics_editor.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./ics_editor.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/tiff_util.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/tiff_util.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./point.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./point.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./alg_mirror.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/output_redirector.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./not_connected_error.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/img/jpk_util.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/img/jpk_util.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/completer_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./alg_shift.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./render_pass.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_pass.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./property_id.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./property_id.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/dir_model.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./polygon_mask.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./polygon_mask.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./discrete_shrink.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./bitmap_io.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./query.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./query.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./transformation_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/gutter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./collada_exporter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./query_error.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_error.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./color.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./color.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./query_state.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_state.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./entity.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./progress.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./progress.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./entity_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./size.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./size.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gl_helper.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./spherical_mask.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./spherical_mask.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./util.cc /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./util.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./util.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./util.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./value_util.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./value_util.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./residue_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./vecmat.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./vecmat.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./residue_handle.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_handle.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/base/src/./mask_info_convert.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./transformations.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformations.hh [ 0%] Built target ost_img_headers cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gfx.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat4_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/vecmat4_op.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./fractional_shift.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gfx_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./module_config.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./polar.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./polar.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/path_completer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./residue_prop.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_prop.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gfx_node.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gfx_node_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gfx_node_visitor.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./line_average.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_average.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/img/alg/src/./rscrosscorr.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/python_context_parser.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/python_completer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gfx_object_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/python_shell.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/python_shell_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./residue_view.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_view.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./sec_structure.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./sec_structure.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./spatial_organizer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/python_shell_widget.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/python_tokenizer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh [ 0%] Built target ost_img_alg_headers [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o -MF CMakeFiles/ost_geom.dir/composite2.cc.o.d -o CMakeFiles/ost_geom.dir/composite2.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/composite2.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gfx_object.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/seq/load.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/seq/load.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gfx_object_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./surface.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/seq/save.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/seq/save.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./binary_data_sink.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./io_manager.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./io_manager.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./binary_data_source.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_source.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/text_logger.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gfx_prim.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./module_config.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./container_serialization.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./container_serialization.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./surface_builder.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_builder.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./builder.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./builder.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./symmetry_node.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/python_interpreter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/python_interpreter_worker.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/shell_history.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/state_machine.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/state.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./swap_util.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./swap_util.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./surface_handle.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_handle.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gfx_test_object.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/transition.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./surface_prop.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_prop.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./io_utils.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./io_utils.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/python_shell/transition_guard.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./glwin_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./io_exception.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./io_exception.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./input.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./input.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./torsion_handle.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/panels/button_bar.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./convert.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./convert.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/panels/drop_box.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./prim_list.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./prim_list.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./scene.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/panels/panel_bar.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/panels/panel_manager.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/panels/bottom_bar.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/panels/button_box.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_box.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/panels/event_button.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/event_button.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./transfer_connectivity.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./selection.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./selection.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./converting_streams.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./converting_streams.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./surface.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./surface.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./texture.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./texture.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./vertex_array.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./query_view_wrapper.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/panels/panel_widget_container.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./formatted_line.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./formatted_line.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/panels/panel_bar_widget_holder.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./vertex_array_helper.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./scene_observer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gl_include.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_include.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/star_parser.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./star_parser.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./view_type_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/star_writer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./star_writer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./xcs_editor.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/mmcif_info.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_info.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./bounding_box.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./bounding_box.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./transform.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./transform.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_writer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/panels/side_bar.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/mol/base/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/mol/./module_config.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/io_profile.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./io_profile.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/panels/splitter_panel_bar.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/panels/tabbed_panel_bar.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh [ 1%] Built target ost_mol_headers cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/dcd_io.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./dcd_io.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/scene_win/context_menu.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./glext_include.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glext_include.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/scene_win/current_selection_node.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o -MF CMakeFiles/ost_geom.dir/composite3.cc.o.d -o CMakeFiles/ost_geom.dir/composite3.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/composite3.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./render_mode.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_mode.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./material.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./material.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/scene_win/custom_part_node.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gradient.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/scene_win/entity_node.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gradient_manager.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./module_config.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/scene_win/entity_part_node.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/scene_win/gfx_scene_node.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./primitives.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./primitives.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/scene_win/label_node.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/pdb_reader.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_reader.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./povray_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/scene_win/root_node.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/pdb_writer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_writer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./povray.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./exporter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/scene_win/render_mode_node.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/sdf_reader.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_reader.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/sdf_writer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_writer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./exporter_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./gost_exporter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/scene_win/render_modes_node.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/save_entity.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./save_entity.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/load_entity.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./load_entity.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/scene_win/scene_node.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/scene_win/scene_win.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./map_iso.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./map_slab.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_slab.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/load_surface.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./load_surface.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/scene_win/scene_win_model.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gfx/src/./map_iso_prop.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' [ 1%] Built target ost_gfx_headers cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/pdb_str.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_str.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o -MF CMakeFiles/ost_geom.dir/composite2_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/composite2_op.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/sdf_str.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_str.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/messages/message_widget.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/messages/message_box_widget.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/mmcif_str.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_str.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/messages/log_reader.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/argand.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/data_viewer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./mol/omf.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./omf.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/data_viewer_panel.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/draw_overlay.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/drawing_functions.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/fft_panel.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/info_panel.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/img2qt.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./seq/load.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./load.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/mask_overlay.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/null_overlay.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./seq/save.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./save.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/overlay.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/load_map.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./load_map.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/overlay_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o -MF CMakeFiles/ost_geom.dir/composite3_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite3_op.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/composite3_op.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/overlay_base_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/overlay_manager.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/image_format.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./image_format.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/pointlist_overlay.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/strategies.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o -MF CMakeFiles/ost_geom.dir/quat.cc.o.d -o CMakeFiles/ost_geom.dir/quat.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/quat.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/strategies_fw.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o -MF CMakeFiles/ost_geom.dir/transform.cc.o.d -o CMakeFiles/ost_geom.dir/transform.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/transform.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/data_viewer/viewer_normalizer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./file_browser.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_browser.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./file_type_dialog.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./file_viewer.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_viewer.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./gl_canvas.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./gl_win.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_win.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./scene_menu.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_menu.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./gosty_app.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./gosty_app.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./admin.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./admin.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/map_io_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./module_config.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./module_config.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./main.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./main.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./main_area.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_area.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./perspective.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./perspective.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -MF CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o.d -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/aligned_cuboid.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/tiff_util.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./tiff_util.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/io/src/./img/jpk_util.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/io/./jpk_util.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' [ 1%] Built target ost_io_headers [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o -MF CMakeFiles/ost_geom.dir/point_cloud.cc.o.d -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/src/point_cloud.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./scene_selection.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_selection.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./main_window.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_window.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./thin_splitter.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./widget.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./widget_geom_handler.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./widget_pool.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_pool.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./widget_registry.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_registry.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./widget_state_saver.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.11.1/modules/gui/src/./file_loader.hh /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_loader.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' [ 1%] Built target ost_gui_headers /build/reproducible-path/openstructure-2.11.1/modules/geom/src/composite3.cc: In member function 'geom::Quat geom::Rotation3::GetQuat() const': /build/reproducible-path/openstructure-2.11.1/modules/geom/src/composite3.cc:218:27: note: parameter passing for argument of type 'geom::Quat' when C++17 is enabled changed to match C++14 in GCC 10.1 218 | Quat Rotation3::GetQuat() const | ^~~~~ /build/reproducible-path/openstructure-2.11.1/modules/geom/src/quat.cc: In function 'geom::Quat geom::{anonymous}::extract_from_rotmat(const geom::Mat3&)': /build/reproducible-path/openstructure-2.11.1/modules/geom/src/quat.cc:185:41: note: parameter passing for argument of type 'geom::Quat' when C++17 is enabled changed to match C++14 in GCC 10.1 185 | Quat extract_from_rotmat(const Mat3& rot) | ^ [ 1%] Linking CXX shared library ../../../stage/lib/libost_geom.so cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom.dir/link.txt --verbose=1 /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_geom.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_geom.so.2.11 -o ../../../stage/lib/libost_geom.so.2.11.1 CMakeFiles/ost_geom.dir/mat2.cc.o CMakeFiles/ost_geom.dir/mat3.cc.o CMakeFiles/ost_geom.dir/mat4.cc.o CMakeFiles/ost_geom.dir/vec3.cc.o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o CMakeFiles/ost_geom.dir/composite2.cc.o CMakeFiles/ost_geom.dir/composite3.cc.o CMakeFiles/ost_geom.dir/composite2_op.cc.o CMakeFiles/ost_geom.dir/composite3_op.cc.o CMakeFiles/ost_geom.dir/quat.cc.o CMakeFiles/ost_geom.dir/transform.cc.o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o CMakeFiles/ost_geom.dir/point_cloud.cc.o -L/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_geom.so.2.11.1 ../../../stage/lib/libost_geom.so.2.11 ../../../stage/lib/libost_geom.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' [ 1%] Built target ost_geom make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/base/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src 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&& /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o -MF CMakeFiles/ost_base.dir/log_sink.cc.o.d -o CMakeFiles/ost_base.dir/log_sink.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/base/src/log_sink.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE 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-I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o -MF CMakeFiles/ost_base.dir/string_ref.cc.o.d -o CMakeFiles/ost_base.dir/string_ref.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/base/src/string_ref.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o -MF CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o.d -o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/base/src/test_utils/compare_files.cc [ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/units.cc.o [ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o [ 1%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && 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/usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec2.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod/export_vec2.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o -MF CMakeFiles/ost_base.dir/profile.cc.o.d -o CMakeFiles/ost_base.dir/profile.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/base/src/profile.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/message.cc.o -MF CMakeFiles/ost_base.dir/message.cc.o.d -o CMakeFiles/ost_base.dir/message.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/base/src/message.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/units.cc.o -MF CMakeFiles/ost_base.dir/units.cc.o.d -o CMakeFiles/ost_base.dir/units.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/base/src/units.cc cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod/export_vecmat2_op.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG 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modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod/export_vecmat3_op.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec4.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec4.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod/export_vec4.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod/export_vecmat4_op.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o -MF CMakeFiles/_ost_geom.dir/wrap_geom.cc.o.d -o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod/wrap_geom.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat2.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod/export_mat2.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat3.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod/export_mat3.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat4.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat4.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod/export_mat4.cc [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite2.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod/export_composite2.cc [ 3%] Linking CXX shared library ../../../stage/lib/libost_base.so cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base.dir/link.txt --verbose=1 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_base.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_base.so.2.11 -o ../../../stage/lib/libost_base.so.2.11.1 CMakeFiles/ost_base.dir/generic_property.cc.o CMakeFiles/ost_base.dir/log.cc.o CMakeFiles/ost_base.dir/log_sink.cc.o CMakeFiles/ost_base.dir/profile.cc.o CMakeFiles/ost_base.dir/units.cc.o CMakeFiles/ost_base.dir/string_ref.cc.o CMakeFiles/ost_base.dir/platform.cc.o CMakeFiles/ost_base.dir/message.cc.o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -L/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 ../../../stage/lib/libost_geom.so.2.11.1 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_base.so.2.11.1 ../../../stage/lib/libost_base.so.2.11 ../../../stage/lib/libost_base.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' [ 3%] Built target ost_base [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite3.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod/export_composite3.cc c++: fatal error: Killed signal terminated program cc1plus compilation terminated. make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:110: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o] Error 1 make[3]: *** Waiting for unfinished jobs.... make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.11.1 /build/reproducible-path/openstructure-2.11.1/modules/info/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o -MF CMakeFiles/ost_info.dir/info_impl.cc.o.d -o CMakeFiles/ost_info.dir/info_impl.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/info/src/info_impl.cc c++: fatal error: Killed signal terminated program cc1plus compilation terminated. make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:82: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o] Error 1 [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o -MF CMakeFiles/ost_info.dir/info_handle.cc.o.d -o CMakeFiles/ost_info.dir/info_handle.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/info/src/info_handle.cc [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o -MF CMakeFiles/ost_info.dir/info_group.cc.o.d -o CMakeFiles/ost_info.dir/info_group.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/info/src/info_group.cc [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o -MF CMakeFiles/ost_info.dir/info_item.cc.o.d -o CMakeFiles/ost_info.dir/info_item.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/info/src/info_item.cc [ 3%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o -MF CMakeFiles/ost_info.dir/info_path.cc.o.d -o CMakeFiles/ost_info.dir/info_path.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/info/src/info_path.cc c++: fatal error: Killed signal terminated program cc1plus compilation terminated. make[3]: *** [modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make:208: modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o] Error 1 [ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o -MF CMakeFiles/ost_info.dir/info_set.cc.o.d -o CMakeFiles/ost_info.dir/info_set.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/info/src/info_set.cc In file included from /usr/include/boost/preprocessor/iteration/detail/iter/limits/forward1_256.hpp:14, from /usr/include/boost/preprocessor/iteration/detail/iter/forward1.hpp:1343, from /usr/include/boost/python/detail/invoke.hpp:61, from /usr/include/boost/python/detail/caller.hpp:16, from /usr/include/boost/python/object/function_handle.hpp:8, from /usr/include/boost/python/converter/arg_to_python.hpp:19, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/reproducible-path/openstructure-2.11.1/modules/geom/pymod/export_composite3.cc:19: /usr/include/boost/python/detail/invoke.hpp: In function 'PyObject* boost::python::detail::invoke(invoke_tag_, const RC&, F&, TC&) [with RC = boost::python::to_python_value; F = geom::Quat (geom::Rotation3::*)() const; TC = boost::python::arg_from_python]': /usr/include/boost/python/detail/invoke.hpp:86:25: note: parameter passing for argument of type 'geom::Quat' when C++17 is enabled changed to match C++14 in GCC 10.1 86 | return rc( (tc().*f)(BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, ac, () BOOST_PP_INTERCEPT)) ); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_visitor.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/info/src/info_visitor.cc [ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -MF CMakeFiles/ost_info.dir/geom_info_conversion.cc.o.d -o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/info/src/geom_info_conversion.cc [ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -c /build/reproducible-path/openstructure-2.11.1/modules/info/src/info_verbose_visitor.cc make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:4745: modules/geom/pymod/CMakeFiles/_ost_geom.dir/all] Error 2 make[2]: *** Waiting for unfinished jobs.... [ 5%] Linking CXX shared library ../../../stage/lib/libost_info.so cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_info.dir/link.txt --verbose=1 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.17: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.11.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_info.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_info.so.2.11 -o ../../../stage/lib/libost_info.so.2.11.1 CMakeFiles/ost_info.dir/info_impl.cc.o CMakeFiles/ost_info.dir/info_handle.cc.o CMakeFiles/ost_info.dir/info_group.cc.o CMakeFiles/ost_info.dir/info_item.cc.o CMakeFiles/ost_info.dir/info_path.cc.o CMakeFiles/ost_info.dir/info_set.cc.o CMakeFiles/ost_info.dir/info_visitor.cc.o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -L/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.17 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.17 ../../../stage/lib/libost_base.so.2.11.1 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.17 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.17 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.11.1 cd /build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_info.so.2.11.1 ../../../stage/lib/libost_info.so.2.11 ../../../stage/lib/libost_info.so make[3]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' [ 5%] Built target ost_info make[2]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' make[1]: *** [Makefile:159: all] Error 2 make[1]: Leaving directory '/build/reproducible-path/openstructure-2.11.1/obj-aarch64-linux-gnu' dh_auto_build: error: cd obj-aarch64-linux-gnu && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 returned exit code 2 make: *** [debian/rules:17: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/203992 and its subdirectories Tue Oct 21 00:27:08 UTC 2025 W: No second build log, what happened?