Wed Oct 29 13:28:55 UTC 2025 I: starting to build packmol/forky/arm64 on jenkins on '2025-10-29 13:28' Wed Oct 29 13:28:55 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_8/94352/console.log Wed Oct 29 13:28:55 UTC 2025 I: Downloading source for forky/packmol=1:21.1.1-1 --2025-10-29 13:28:55-- http://deb.debian.org/debian/pool/main/p/packmol/packmol_21.1.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1920 (1.9K) [text/prs.lines.tag] Saving to: ‘packmol_21.1.1-1.dsc’ 0K . 100% 211M=0s 2025-10-29 13:28:55 (211 MB/s) - ‘packmol_21.1.1-1.dsc’ saved [1920/1920] Wed Oct 29 13:28:55 UTC 2025 I: packmol_21.1.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: packmol Binary: packmol Architecture: any Version: 1:21.1.1-1 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: http://m3g.iqm.unicamp.br/packmol/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/debichem-team/packmol Vcs-Git: https://salsa.debian.org/debichem-team/packmol.git Build-Depends: debhelper-compat (= 13), cmake, gfortran Package-List: packmol deb science optional arch=any Checksums-Sha1: d945ac24aed3aeab33db37e0c035c43f53f6909c 634943 packmol_21.1.1.orig.tar.gz 1442f7c72b51c9e2e817358d23c9017b3770b890 3208 packmol_21.1.1-1.debian.tar.xz Checksums-Sha256: 4bad785e6e1b91d8b80934eeebf91013e940c577693bbecd7ec56eb563f5d97f 634943 packmol_21.1.1.orig.tar.gz c0ecfe1b9316ca724ea2176e3a3839056ab533996d2b9085b870ae9f8cd9fe2c 3208 packmol_21.1.1-1.debian.tar.xz Files: 3e6050754fd9bf63f0fa5d4328927db3 634943 packmol_21.1.1.orig.tar.gz 67a25184ff47bbc1d641a55506bb0136 3208 packmol_21.1.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmj7eGIACgkQVz7x5L1a AfqrXA/9FqZBh5CZRJkDELKE1r3A1keeirUna16hNecN+eh0Wg0mCAa1Vq7oVK5t LBqIKNyycIjpKXLcRAtSoWSTzPdBHkuDk9oCpNPl5IOPtR6CWjncz4ulX4bMWt3t o9sOjW4/ofAlCKPLHu3/K22hmIRzXDH4VylXRutsnw7opWykW/3amxxWW81KLgW8 U1Y4yFDqcXbuq7L2T1O29kusmCjZTe6TM/DAe+h1YoVH80vxCr7qF74o/z1oBPSw xYilBL6OPAfwKoD+ONJNIgZ3DahrN8UWNaFLwoJq7i9oeQdPg0sQKaxqxh0jI3OG RCj8Wo3PYF9/xR+1sAL3H5gAvP2/tcbiTLomJ/w1jnWbDND7OLC1pXUHvF6ErHAm VuPbOnqTYkzD6xxNOmMAi5iT2waJ7miyjwezavY9LbWznMIF1ov6OI8WG5n0+eMQ LBf0vZt+2vTpdPO8CqLf4DrmkW6YmP1yOPwo6rncaYIoBPb6MJrOJppeXF/hBUJY JcS+cL5A+94Vuzb4ArlVXmuKCmeGJ6ZARo3Hj8JMFVI//vxUa8/jDzifiwH/X4hq T25gmBc5KJ80kKE76iBapDgJQYvlG2dDEIby3F3ui9b4IzGVEyiRjm7vdCOJ/hlM 7lULJmdBar45BzDk/N3HVHmiA8onL2G7qmTt0PaT+nzOfZChJB8= =2VXZ -----END PGP SIGNATURE----- Wed Oct 29 13:28:55 UTC 2025 I: Checking whether the package is not for us Wed Oct 29 13:28:55 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Wed Oct 29 13:28:55 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Wed Oct 29 13:29:48 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 29 01:28:56 -12 2025 I: pbuilder-time-stamp: 1761744536 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [packmol_21.1.1-1.dsc] I: copying [./packmol_21.1.1.orig.tar.gz] I: copying [./packmol_21.1.1-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./packmol_21.1.1-1.dsc: no acceptable signature found dpkg-source: info: extracting packmol in packmol-21.1.1 dpkg-source: info: unpacking packmol_21.1.1.orig.tar.gz dpkg-source: info: unpacking packmol_21.1.1-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2500300/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='65d9366e8b1b48f3a442e8f2440a3c7b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2500300' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7msCMOhC/pbuilderrc_xGkh --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7msCMOhC/b1 --logfile b1/build.log packmol_21.1.1-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2500300/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, gfortran dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20004 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran-15-dev{a} libgfortran5{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 107 MB of archives. After unpacking 463 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-1 [94.3 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 29 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.17.0~rc2-1 [369 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get: 50 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 56 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-4 [371 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libgfortran-15-dev arm64 15.2.0-4 [411 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-4 [76.9 MB] Get: 65 http://deb.debian.org/debian forky/main arm64 gfortran-15 arm64 15.2.0-4 [17.9 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4 [1280 B] Get: 67 http://deb.debian.org/debian forky/main arm64 gfortran arm64 4:15.2.0-4 [1428 B] Fetched 107 MB in 1s (185 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20004 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_arm64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-1_arm64.deb ... Unpacking bsdextrautils (2.41.2-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. 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I: Building the package I: Running cd /build/reproducible-path/packmol-21.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../packmol_21.1.1-1_source.changes dpkg-buildpackage: info: source package packmol dpkg-buildpackage: info: source version 1:21.1.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake dh_auto_configure -O--buildsystem=cmake cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The Fortran compiler identification is GNU 15.2.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/f95 - skipped -- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/packmol-21.1.1 -B/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu' make -f CMakeFiles/packmol.dir/build.make CMakeFiles/packmol.dir/depend make[3]: Entering directory '/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/packmol-21.1.1 /build/reproducible-path/packmol-21.1.1 /build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu /build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu /build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu/CMakeFiles/packmol.dir/DependInfo.cmake "--color=" Dependee "/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu/CMakeFiles/packmol.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu/CMakeFiles/packmol.dir/depend.internal". 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-mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/random.f90 -o CMakeFiles/packmol.dir/src/random.f90.o /usr/bin/cmake -E cmake_copy_f90_mod sizes.mod CMakeFiles/packmol.dir/sizes.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod swaptypemod.mod CMakeFiles/packmol.dir/swaptypemod.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod exit_codes.mod CMakeFiles/packmol.dir/exit_codes.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod pbc.mod CMakeFiles/packmol.dir/pbc.mod.stamp GNU /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/sizes.f90.o.provides.build /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/swaptypemod.f90.o.provides.build [ 29%] Building Fortran object CMakeFiles/packmol.dir/src/compute_data.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/compute_data.f90 -o CMakeFiles/packmol.dir/src/compute_data.f90.o [ 31%] Building Fortran object CMakeFiles/packmol.dir/src/input.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/input.f90 -o CMakeFiles/packmol.dir/src/input.f90.o /usr/bin/cmake -E cmake_copy_f90_mod ahestetic.mod CMakeFiles/packmol.dir/ahestetic.mod.stamp GNU /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/exit_codes.f90.o.provides.build [ 34%] Building Fortran object CMakeFiles/packmol.dir/src/usegencan.f90.o /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/pbc.f90.o.provides.build [ 36%] Building Fortran object CMakeFiles/packmol.dir/src/flashmod.f90.o [ 39%] Building Fortran object CMakeFiles/packmol.dir/src/comparegrad.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/flashmod.f90 -o CMakeFiles/packmol.dir/src/flashmod.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/usegencan.f90 -o CMakeFiles/packmol.dir/src/usegencan.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/comparegrad.f90 -o CMakeFiles/packmol.dir/src/comparegrad.f90.o /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/ahestetic.f90.o.provides.build /usr/bin/cmake -E cmake_copy_f90_mod compute_data.mod CMakeFiles/packmol.dir/compute_data.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod flashsort.mod CMakeFiles/packmol.dir/flashsort.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod usegencan.mod CMakeFiles/packmol.dir/usegencan.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod input.mod CMakeFiles/packmol.dir/input.mod.stamp GNU [ 41%] Building Fortran object CMakeFiles/packmol.dir/src/title.f90.o /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/flashmod.f90.o.provides.build /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/title.f90 -o CMakeFiles/packmol.dir/src/title.f90.o /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/compute_data.f90.o.provides.build /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/usegencan.f90.o.provides.build /build/reproducible-path/packmol-21.1.1/src/gencan.f:62:32: 62 | subroutine evalnal(n,x,m,lambda,rho,g,flag) | 1~~~~~ Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument] [ 43%] Building Fortran object CMakeFiles/packmol.dir/src/cell_indexing.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/cell_indexing.f90 -o CMakeFiles/packmol.dir/src/cell_indexing.f90.o /build/reproducible-path/packmol-21.1.1/src/gencan.f:62:39: 62 | subroutine evalnal(n,x,m,lambda,rho,g,flag) | 1~~ Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.1/src/gencan.f:2571:35: 2571 | +steabs,epsrel,epsabs,infrel,infabs) | 1~~~~~ Warning: Unused dummy argument 'infabs' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.1/src/gencan.f:2571:28: 2571 | +steabs,epsrel,epsabs,infrel,infabs) | 1~~~~~ Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.1/src/gencan.f:2570:73: 2570 | +fmin,maxfc,iprint,fcnt,inform,xtrial,d,gamma,sigma1,sigma2,sterel, | 1 2571 | +steabs,epsrel,epsabs,infrel,infabs) | ~~~~~~~ Warning: Unused dummy argument 'steabs' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.1/src/gencan.f:2570:66: 2570 | +fmin,maxfc,iprint,fcnt,inform,xtrial,d,gamma,sigma1,sigma2,sterel, | 1~~~~~ Warning: Unused dummy argument 'sterel' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.1/src/gencan.f:3805:56: 3805 | +sigma1,sigma2,sterel,steabs,epsrel,epsabs,infrel,infabs) | 1~~~~~ Warning: Unused dummy argument 'infabs' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.1/src/gencan.f:3805:49: 3805 | +sigma1,sigma2,sterel,steabs,epsrel,epsabs,infrel,infabs) | 1~~~~~ Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] [ 46%] Building Fortran object CMakeFiles/packmol.dir/src/gparc.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/gparc.f90 -o CMakeFiles/packmol.dir/src/gparc.f90.o /build/reproducible-path/packmol-21.1.1/src/gencan.f:4:31: 4 | subroutine evalal(n,x,m,lambda,rho,f,flag) | 1~~~~~ Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.1/src/gencan.f:4:38: 4 | subroutine evalal(n,x,m,lambda,rho,f,flag) | 1~~ Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.1/src/gencan.f:2967:14: 2967 | +epsabs,infrel,infabs) | 1~~~~~ Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.1/src/gencan.f:5165:14: 5165 | +steabs,inform) | 1~~~~~ Warning: Unused dummy argument 'inform' at (1) [-Wunused-dummy-argument] [ 48%] Building Fortran object CMakeFiles/packmol.dir/src/fparc.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/fparc.f90 -o CMakeFiles/packmol.dir/src/fparc.f90.o [ 51%] Building Fortran object CMakeFiles/packmol.dir/src/gwalls.f90.o [ 53%] Building Fortran object CMakeFiles/packmol.dir/src/comprest.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/comprest.f90 -o CMakeFiles/packmol.dir/src/comprest.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/gwalls.f90 -o CMakeFiles/packmol.dir/src/gwalls.f90.o [ 56%] Building Fortran object CMakeFiles/packmol.dir/src/tobar.f90.o /build/reproducible-path/packmol-21.1.1/src/gencan.f:5164:47: 5164 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1~~~~~ Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.1/src/gencan.f:5164:54: 5164 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1~~ Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.1/src/gencan.f:5164:73: 5164 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1 5165 | +steabs,inform) | ~~~~~~~ Warning: Unused dummy argument 'steabs' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.1/src/gencan.f:5164:66: 5164 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1~~~~~ Warning: Unused dummy argument 'sterel' at (1) [-Wunused-dummy-argument] /build/reproducible-path/packmol-21.1.1/src/gencan.f:5164:61: 5164 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel, | 1~~~ Warning: Unused dummy argument 'xtmp' at (1) [-Wunused-dummy-argument] [ 58%] Building Fortran object CMakeFiles/packmol.dir/src/restmol.f90.o /build/reproducible-path/packmol-21.1.1/src/gencan.f:125:25: 125 | subroutine evalhd(n) | 1 Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument] /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/restmol.f90 -o CMakeFiles/packmol.dir/src/restmol.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/tobar.f90 -o CMakeFiles/packmol.dir/src/tobar.f90.o [ 60%] Building Fortran object CMakeFiles/packmol.dir/src/swaptype.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/swaptype.f90 -o CMakeFiles/packmol.dir/src/swaptype.f90.o [ 63%] Building Fortran object CMakeFiles/packmol.dir/src/heuristics.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/heuristics.f90 -o CMakeFiles/packmol.dir/src/heuristics.f90.o /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/input.f90.o.provides.build [ 65%] Building Fortran object CMakeFiles/packmol.dir/src/cli_parser.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/cli_parser.f90 -o CMakeFiles/packmol.dir/src/cli_parser.f90.o [ 68%] Building Fortran object CMakeFiles/packmol.dir/src/cenmass.f90.o [ 70%] Building Fortran object CMakeFiles/packmol.dir/src/pgencan.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/cenmass.f90 -o CMakeFiles/packmol.dir/src/cenmass.f90.o [ 73%] Building Fortran object CMakeFiles/packmol.dir/src/setsizes.f90.o [ 75%] Building Fortran object CMakeFiles/packmol.dir/src/getinp.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/pgencan.f90 -o CMakeFiles/packmol.dir/src/pgencan.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/setsizes.f90 -o CMakeFiles/packmol.dir/src/setsizes.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/getinp.f90 -o CMakeFiles/packmol.dir/src/getinp.f90.o [ 78%] Building Fortran object CMakeFiles/packmol.dir/src/strlength.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/strlength.f90 -o CMakeFiles/packmol.dir/src/strlength.f90.o [ 80%] Building Fortran object CMakeFiles/packmol.dir/src/output.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/output.f90 -o CMakeFiles/packmol.dir/src/output.f90.o [ 82%] Building Fortran object CMakeFiles/packmol.dir/src/checkpoint.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/checkpoint.f90 -o CMakeFiles/packmol.dir/src/checkpoint.f90.o [ 85%] Building Fortran object CMakeFiles/packmol.dir/src/writesuccess.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/writesuccess.f90 -o CMakeFiles/packmol.dir/src/writesuccess.f90.o /usr/bin/cmake -E cmake_copy_f90_mod cell_indexing.mod CMakeFiles/packmol.dir/cell_indexing.mod.stamp GNU /usr/bin/cmake -E cmake_copy_f90_mod cli_parser.mod CMakeFiles/packmol.dir/cli_parser.mod.stamp GNU /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/cell_indexing.f90.o.provides.build [ 87%] Building Fortran object CMakeFiles/packmol.dir/src/initial.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/initial.f90 -o CMakeFiles/packmol.dir/src/initial.f90.o [ 90%] Building Fortran object CMakeFiles/packmol.dir/src/resetcells.f90.o [ 92%] Building Fortran object CMakeFiles/packmol.dir/src/computef.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/computef.f90 -o CMakeFiles/packmol.dir/src/computef.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/resetcells.f90 -o CMakeFiles/packmol.dir/src/resetcells.f90.o [ 95%] Building Fortran object CMakeFiles/packmol.dir/src/computeg.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/src/computeg.f90 -o CMakeFiles/packmol.dir/src/computeg.f90.o /usr/bin/cmake -E touch CMakeFiles/packmol.dir/src/cli_parser.f90.o.provides.build [ 97%] Building Fortran object CMakeFiles/packmol.dir/app/packmol.f90.o /usr/bin/f95 -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wall -c /build/reproducible-path/packmol-21.1.1/app/packmol.f90 -o CMakeFiles/packmol.dir/app/packmol.f90.o /build/reproducible-path/packmol-21.1.1/src/getinp.f90:979:15: 979 | if(ires.ne.ireslast) then | ^ Warning: 'ireslast' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/src/getinp.f90:964:28: 964 | integer :: iread, ires, ireslast, nres, ioerr | ^~~~~~~~ note: 'ireslast' was declared here /build/reproducible-path/packmol-21.1.1/src/output.f90:353:36: 353 | nres = ilres - ifres + 1 | ^ Warning: 'ilres' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/src/output.f90:19:35: 19 | iimol, ichain, iatom, irec, ilres, ifres,& | ^~~~~ note: 'ilres' was declared here /build/reproducible-path/packmol-21.1.1/app/packmol.f90:614:44: 614 | iratom(icart,iratcount) = iirest | ^ Warning: 'iirest' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/app/packmol.f90:52:37: 52 | integer :: i, iline, iiatom, iat, iirest, iratcount, ival | ^~~~~~ note: 'iirest' was declared here /build/reproducible-path/packmol-21.1.1/src/gencan.f:3339:72: 3339 | + beta ** 2 * dnorm2 | ^ Warning: 'alpha' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/src/gencan.f:3221:27: 3221 | double precision aa,alpha,amax,amax1,amax1n,amaxn,amax2,amax2n, | ^~~~~ note: 'alpha' was declared here /build/reproducible-path/packmol-21.1.1/src/gencan.f:3480:72: 3480 | amax = min( amax1 , amax2 ) | ^ Warning: 'amax1' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/src/gencan.f:3221:38: 3221 | double precision aa,alpha,amax,amax1,amax1n,amaxn,amax2,amax2n, | ^~~~~ note: 'amax1' was declared here /build/reproducible-path/packmol-21.1.1/src/gencan.f:3481:72: 3481 | amaxn = max( amax1n, amax2n ) | ^ Warning: 'amax1n' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/src/gencan.f:3221:44: 3221 | double precision aa,alpha,amax,amax1,amax1n,amaxn,amax2,amax2n, | ^~~~~~ note: 'amax1n' was declared here /build/reproducible-path/packmol-21.1.1/src/gencan.f:3339:72: 3339 | + beta ** 2 * dnorm2 | ^ Warning: 'dnorm2' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/src/gencan.f:3222:62: 3222 | + amax2nx,amax2x,bb,bestprog,beta,cc,currprog,dd,dnorm2,dtr, | ^~~~~~ note: 'dnorm2' was declared here /build/reproducible-path/packmol-21.1.1/src/gencan.f:3339:72: 3339 | + beta ** 2 * dnorm2 | ^ Warning: 'dtr' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/src/gencan.f:3222:69: 3222 | + amax2nx,amax2x,bb,bestprog,beta,cc,currprog,dd,dnorm2,dtr, | ^~~ note: 'dtr' was declared here /build/reproducible-path/packmol-21.1.1/src/gencan.f:3339:72: 3339 | + beta ** 2 * dnorm2 | ^ Warning: 'dtw' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/src/gencan.f:3223:19: 3223 | + dts,dtw,gnorm2,gts,norm2s,q,qamax,qamaxn,qprev,rnorm2, | ^~~ note: 'dtw' was declared here /build/reproducible-path/packmol-21.1.1/src/gencan.f:3332:72: 3332 | beta = rnorm2 / rnorm2prev | ^ Warning: 'rnorm2prev' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/src/gencan.f:3224:15: 3224 | + rnorm2prev,snorm2,snorm2prev | ^~~~~~~~~~ note: 'rnorm2prev' was declared here /build/reproducible-path/packmol-21.1.1/src/gencan.f:3629:72: 3629 | rbdind = rbdposaind | ^ Warning: 'rbdposaind' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/src/gencan.f:3220:47: 3220 | integer i,itnqmp,rbdnegaind,rbdnegatype,rbdposaind,rbdposatype | ^~~~~~~~~~ note: 'rbdposaind' was declared here /build/reproducible-path/packmol-21.1.1/src/gencan.f:3636:14: 3636 | if ( rbdtype .eq. 1 ) then | ^ Warning: 'rbdposatype' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/src/gencan.f:3220:58: 3220 | integer i,itnqmp,rbdnegaind,rbdnegatype,rbdposaind,rbdposatype | ^~~~~~~~~~~ note: 'rbdposatype' was declared here /build/reproducible-path/packmol-21.1.1/src/gencan.f:2128:72: 2128 | delta = max( delmin, 10.0d0 * sqrt( sts ) ) | ^ Warning: 'sts' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/src/gencan.f:1677:35: 1677 | + kappa,lamspg,ometa2,sts,sty,xnorm | ^~~ note: 'sts' was declared here /build/reproducible-path/packmol-21.1.1/src/gencan.f:2300:35: 2300 | if ( iter .eq. 1 .or. sty .le. 0.0d0 ) then | ^ Warning: 'sty' may be used uninitialized [-Wmaybe-uninitialized] /build/reproducible-path/packmol-21.1.1/src/gencan.f:1677:39: 1677 | + kappa,lamspg,ometa2,sts,sty,xnorm | ^~~ note: 'sty' was declared here [100%] Linking Fortran executable packmol /usr/bin/cmake -E cmake_link_script CMakeFiles/packmol.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/packmol.dir/link.d -g -O2 -ffile-prefix-map=/build/reproducible-path/packmol-21.1.1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard CMakeFiles/packmol.dir/src/exit_codes.f90.o CMakeFiles/packmol.dir/src/cenmass.f90.o CMakeFiles/packmol.dir/src/gencan.f.o CMakeFiles/packmol.dir/src/gencan_ieee_signal_routines.f90.o CMakeFiles/packmol.dir/src/pgencan.f90.o CMakeFiles/packmol.dir/src/initial.f90.o CMakeFiles/packmol.dir/src/title.f90.o CMakeFiles/packmol.dir/src/setsizes.f90.o CMakeFiles/packmol.dir/src/getinp.f90.o CMakeFiles/packmol.dir/src/strlength.f90.o CMakeFiles/packmol.dir/src/output.f90.o CMakeFiles/packmol.dir/src/cli_parser.f90.o CMakeFiles/packmol.dir/src/checkpoint.f90.o CMakeFiles/packmol.dir/src/writesuccess.f90.o CMakeFiles/packmol.dir/src/fparc.f90.o CMakeFiles/packmol.dir/src/gparc.f90.o CMakeFiles/packmol.dir/src/gwalls.f90.o CMakeFiles/packmol.dir/src/comprest.f90.o CMakeFiles/packmol.dir/src/comparegrad.f90.o CMakeFiles/packmol.dir/app/packmol.f90.o CMakeFiles/packmol.dir/src/polartocart.f90.o CMakeFiles/packmol.dir/src/resetcells.f90.o CMakeFiles/packmol.dir/src/tobar.f90.o CMakeFiles/packmol.dir/src/cell_indexing.f90.o CMakeFiles/packmol.dir/src/restmol.f90.o CMakeFiles/packmol.dir/src/swaptype.f90.o CMakeFiles/packmol.dir/src/swaptypemod.f90.o CMakeFiles/packmol.dir/src/ahestetic.f90.o CMakeFiles/packmol.dir/src/heuristics.f90.o CMakeFiles/packmol.dir/src/flashsort.f90.o CMakeFiles/packmol.dir/src/jacobi.f90.o CMakeFiles/packmol.dir/src/random.f90.o CMakeFiles/packmol.dir/src/sizes.f90.o CMakeFiles/packmol.dir/src/pbc.f90.o CMakeFiles/packmol.dir/src/usegencan.f90.o CMakeFiles/packmol.dir/src/compute_data.f90.o CMakeFiles/packmol.dir/src/flashmod.f90.o CMakeFiles/packmol.dir/src/computef.f90.o CMakeFiles/packmol.dir/src/computeg.f90.o CMakeFiles/packmol.dir/src/input.f90.o -o packmol make[3]: Leaving directory '/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu' [100%] Built target packmol make[2]: Leaving directory '/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu' dh_auto_test -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/packmol/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/packmol-21.1.1/debian/packmol AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/packmol-21.1.1 -B/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/packmol-21.1.1/debian/packmol/usr/bin/packmol make[1]: Leaving directory '/build/reproducible-path/packmol-21.1.1/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'packmol' in '../packmol_21.1.1-1_arm64.deb'. dpkg-deb: building package 'packmol-dbgsym' in '../packmol-dbgsym_21.1.1-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../packmol_21.1.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../packmol_21.1.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2500300 and its subdirectories I: Current time: Wed Oct 29 01:29:47 -12 2025 I: pbuilder-time-stamp: 1761744587 Wed Oct 29 13:29:49 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Wed Oct 29 13:29:49 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Wed Oct 29 13:30:50 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Wed Oct 29 13:30:51 UTC 2025 I: packmol_21.1.1-1_arm64.changes: Format: 1.8 Date: Fri, 24 Oct 2025 14:42:42 +0200 Source: packmol Binary: packmol packmol-dbgsym Architecture: arm64 Version: 1:21.1.1-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Drew Parsons Description: packmol - Initial configurations for Molecular Dynamics Simulations Changes: packmol (1:21.1.1-1) unstable; urgency=medium . * New upstream release - applies debian patch cmake4.patch Checksums-Sha1: ac0d7aa191580437907ace978b16a7c63a882a92 130608 packmol-dbgsym_21.1.1-1_arm64.deb 01878a6ce5d1a748ff0c17bf6f601bf5a23f140a 6096 packmol_21.1.1-1_arm64.buildinfo d0be1785e1543434f019fcb6880cb699eb64011e 103328 packmol_21.1.1-1_arm64.deb Checksums-Sha256: a02200852d61c9d31ed8f141ebd7cbe8804df4324b3f2d97a59e1b35c07922be 130608 packmol-dbgsym_21.1.1-1_arm64.deb d0402d1cb6c50a57d1b2eba30f8ba0c0fd8d240b59a2a3a7c07fd266c49648b6 6096 packmol_21.1.1-1_arm64.buildinfo 4789d35b4c26aabd8dc35ea40a65c051990fa700c263fbdb528d86356166cab8 103328 packmol_21.1.1-1_arm64.deb Files: 5b361604a5d724e2ab13087716f468f4 130608 debug optional packmol-dbgsym_21.1.1-1_arm64.deb efb9c85777f1ce3b232ab96e2df51b75 6096 science optional packmol_21.1.1-1_arm64.buildinfo 84fb75e64f0ef8d385652443be7e1a95 103328 science optional packmol_21.1.1-1_arm64.deb Wed Oct 29 13:30:51 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_8-94352.service; invocation ID: aa6836d4d26049a9b9840fc686d5758b # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.7msCMOhC/packmol_21.1.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.7msCMOhC/packmol_21.1.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.7msCMOhC/packmol_21.1.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.7msCMOhC/b1/packmol_21.1.1-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.7msCMOhC/b2/packmol_21.1.1-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 207ms CPU time consumed: 175ms Memory peak: 18M (swap: 0B) Wed Oct 29 13:30:52 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Wed Oct 29 13:30:52 UTC 2025 I: packmol from forky built successfully and reproducibly on arm64. Wed Oct 29 13:30:52 UTC 2025 I: Removing signed packmol_21.1.1-1_arm64.buildinfo.asc files: removed './b1/packmol_21.1.1-1_arm64.buildinfo.asc' removed './b2/packmol_21.1.1-1_arm64.buildinfo.asc'