Sun Oct 12 20:38:35 UTC 2025 I: starting to build pbcopper/forky/arm64 on jenkins on '2025-10-12 20:38' Sun Oct 12 20:38:35 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/124516/console.log Sun Oct 12 20:38:35 UTC 2025 I: Downloading source for forky/pbcopper=2.3.0+dfsg-4 --2025-10-12 20:38:35-- http://deb.debian.org/debian/pool/main/p/pbcopper/pbcopper_2.3.0%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2319 (2.3K) [text/prs.lines.tag] Saving to: ‘pbcopper_2.3.0+dfsg-4.dsc’ 0K .. 100% 292M=0s 2025-10-12 20:38:35 (292 MB/s) - ‘pbcopper_2.3.0+dfsg-4.dsc’ saved [2319/2319] Sun Oct 12 20:38:35 UTC 2025 I: pbcopper_2.3.0+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbcopper Binary: libpbcopper2.3.0, libpbcopper-dev Architecture: any Version: 2.3.0+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/pbcopper Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/pbcopper Vcs-Git: https://salsa.debian.org/med-team/pbcopper.git Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, d-shlibs, meson, cmake, pkgconf, libboost-dev, libboost-iostreams-dev, googletest, libgtest-dev, libsimde-dev Package-List: libpbcopper-dev deb libdevel optional arch=any libpbcopper2.3.0 deb libs optional arch=any Checksums-Sha1: 7f03fb0c39532e685be6893190fbd1556a45eb0b 736204 pbcopper_2.3.0+dfsg.orig.tar.xz d8396cf912113ff32d9a23fbb9ad247f3482b876 8208 pbcopper_2.3.0+dfsg-4.debian.tar.xz Checksums-Sha256: 778862e58f051159b8b35bdae7d3361011a1cbc674423e6a23992b094f76f162 736204 pbcopper_2.3.0+dfsg.orig.tar.xz 92e8cb13f891902a6d9eb839879fbc4b89e826f2e585e2f0648a9c39ba1415b7 8208 pbcopper_2.3.0+dfsg-4.debian.tar.xz Files: 2dad359fad146c0886f57c921055a49b 736204 pbcopper_2.3.0+dfsg.orig.tar.xz 7c73a220b6ad354550f5d9012cb0f6c3 8208 pbcopper_2.3.0+dfsg-4.debian.tar.xz Dgit: 1f39e68bc333d1946548a0f3c9b673593dccd59a debian archive/debian/2.3.0+dfsg-4 https://git.dgit.debian.org/pbcopper -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmji460UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrJnQ/9HHn7XmbxHMx1+ejZU4+ZOG2OMuLE YXsk8b5RC9ffUkKPEszblpR2Kdo335VsVa+mNv2z7l2IeU2YvLtNOBAEVkmlvruJ bMu+wuY9ZeAb8Qgnhwk0gP5OgoBMUH2JpFUVvvDaHiTw947cHIkwJRLFFLreXa5L rFnutpVINMIhOstrNFPfFaSJ6X4pYoYoDHHUic/PUASH2rlXw3/pkJAak2tBJ/o4 WiDwv7VUz0D8+r6+GAGq39nuUsdmnbZeFVtb29pKE4+2eVH8oO7oVoYSSFFm+mDe 85pXNzAyFq/S7XfIwa2ZDmvw/edBsljevUw5nSmiRU8q2TQk7lOT0fDFULPrIr5m GpBJII4eR2hfDIYrfpuvtgvdDGjeBDkSXHPJ8t4wSM0Dh/J3FnMHawOn3exHoFe6 RNDJxCINgAj/OvWlTLwIcnRnaCdQMspX5qymyQL8Q5D4oti87eANBdCAd+po6d7l nQtcMpLtsDFjtxA+4DV+F9MiewvBnnb2GXpfk1Ux2s/4NxvK2R5MCcOhKqvLDdY2 55Yt1HTmbmqMwnwnOeqIczeqcg3YuWH7ON0hydGF8VcQrAasRm7TE2GZNphlmIuO MNEZC4MAjYuXqoLUDmObeONCu9Ret9ZnLc0tkIPGjoUvcbIn/c5fUkEaPZZswOpW jAPNm8LSdczElF4= =vCmS -----END PGP SIGNATURE----- Sun Oct 12 20:38:35 UTC 2025 I: Checking whether the package is not for us Sun Oct 12 20:38:35 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sun Oct 12 20:38:35 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sun Oct 12 20:41:18 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 14 15:01:37 -12 2026 I: pbuilder-time-stamp: 1794711697 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbcopper_2.3.0+dfsg-4.dsc] I: copying [./pbcopper_2.3.0+dfsg.orig.tar.xz] I: copying [./pbcopper_2.3.0+dfsg-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pbcopper_2.3.0+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting pbcopper in pbcopper-2.3.0+dfsg dpkg-source: info: unpacking pbcopper_2.3.0+dfsg.orig.tar.xz dpkg-source: info: unpacking pbcopper_2.3.0+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying simde.patch dpkg-source: info: applying static+shared_lib.patch dpkg-source: info: applying skip_test_Parallel_FireAndForget.patch dpkg-source: info: applying gcc-13 dpkg-source: info: applying gcc-15 I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2213620/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='8c7e72b369d642e597a0006ca84545f0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2213620' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5ZMZobBm/pbuilderrc_PpnQ --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5ZMZobBm/b1 --logfile b1/build.log pbcopper_2.3.0+dfsg-4.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2213620/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, d-shlibs, meson, cmake, pkgconf, libboost-dev, libboost-iostreams-dev, googletest, libgtest-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu-dev{a} libicu76{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libstdc++-14-dev{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 106 newly installed, 0 to remove and 0 not upgraded. Need to get 75.5 MB of archives. After unpacking 465 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-1 [94.3 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 28 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 43 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.16.0-4 [368 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get: 63 http://deb.debian.org/debian forky/main arm64 d-shlibs all 0.109 [11.1 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 70 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 gcc-14-base arm64 14.3.0-8 [52.1 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 googletest all 1.17.0-1 [522 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 icu-devtools arm64 76.1-4 [200 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libgcc-14-dev arm64 14.3.0-8 [2364 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libstdc++-14-dev arm64 14.3.0-8 [2567 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libboost1.83-dev arm64 1.83.0-5 [10.6 MB] Get: 83 http://deb.debian.org/debian forky/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 84 http://deb.debian.org/debian forky/main arm64 libboost-regex1.83.0 arm64 1.83.0-5 [314 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libicu-dev arm64 76.1-4 [10.6 MB] Get: 86 http://deb.debian.org/debian forky/main arm64 libboost-regex1.83-dev arm64 1.83.0-5 [335 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-5 [261 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 89 http://deb.debian.org/debian forky/main arm64 libgtest-dev arm64 1.17.0-1 [247 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 libsimde-dev all 0.8.2-3 [467 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 ninja-build arm64 1.12.1-1+b1 [130 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 97 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 98 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 99 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 100 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 101 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 102 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 103 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 104 http://deb.debian.org/debian forky/main arm64 meson all 1.9.1-1 [665 kB] Get: 105 http://deb.debian.org/debian forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 106 http://deb.debian.org/debian forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Fetched 75.5 MB in 0s (176 MB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... 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I: Building the package I: Running cd /build/reproducible-path/pbcopper-2.3.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbcopper_2.3.0+dfsg-4_source.changes dpkg-buildpackage: info: source package pbcopper dpkg-buildpackage: info: source version 2.3.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --builddirectory=build dh_auto_clean -O--builddirectory=build dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build dh_auto_configure -O--builddirectory=build cd build && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu -Dpython.bytecompile=-1 The Meson build system Version: 1.9.1 Source dir: /build/reproducible-path/pbcopper-2.3.0+dfsg Build dir: /build/reproducible-path/pbcopper-2.3.0+dfsg/build Build type: native build ../meson.build:2: WARNING: Keyword argument "default_options" defined multiple times. WARNING: This will be an error in Meson 2.0. Project name: pbcopper Project version: 2.3.0 C compiler for the host machine: cc (gcc 15.2.0 "cc (Debian 15.2.0-4) 15.2.0") C linker for the host machine: cc ld.bfd 2.45 C++ compiler for the host machine: c++ (gcc 15.2.0 "c++ (Debian 15.2.0-4) 15.2.0") C++ linker for the host machine: c++ ld.bfd 2.45 Host machine cpu family: aarch64 Host machine cpu: aarch64 Compiler for C++ supports arguments -Wduplicated-cond: YES Compiler for C++ supports arguments -Wduplicated-branches: YES Compiler for C++ supports arguments -Wlogical-op: YES Compiler for C++ supports arguments -Wrestrict: YES Compiler for C++ supports arguments -Wdouble-promotion: YES Compiler for C++ supports arguments -Wshadow: YES Compiler for C++ supports arguments -Wformat=1: YES Compiler for C supports arguments -Wc++-compat: YES Compiler for C supports arguments -Wno-unused-parameter: YES Compiler for C supports arguments -Wno-unused-variable: YES Compiler for C supports arguments -Wno-sign-compare: YES Compiler for C supports arguments -Wno-unused-but-set-variable: YES Compiler for C supports arguments -march=armv8.2-a: YES Run-time dependency threads found: YES Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency Boost found: YES 1.83.0 (/usr) Configuring PbcopperVersion.cpp using configuration Configuring LibraryVersion.h using configuration Program tools/check-formatting found: YES (/build/reproducible-path/pbcopper-2.3.0+dfsg/tools/check-formatting) Run-time dependency GTest found: YES 1.17.0 Configuring PbcopperTestData.h using configuration Build targets in project: 5 pbcopper 2.3.0 User defined options buildtype : plain libdir : lib/aarch64-linux-gnu localstatedir : /var prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja dh_auto_build -O--builddirectory=build cd build && LC_ALL=C.UTF-8 ninja -j12 -v [1/182] /usr/bin/meson --internal vcstagger ../src/LibraryGitHash.h.in src/LibraryGitHash.h 2.3.0 /build/reproducible-path/pbcopper-2.3.0+dfsg/src @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [2/182] /usr/bin/meson --internal vcstagger ../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 2.3.0 /build/reproducible-path/pbcopper-2.3.0+dfsg/src/utility @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [3/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -MF src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o.d -o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -c src/utility/PbcopperGitHash.cpp [4/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o -MF src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o.d -o 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o -c ../src/align/AlignConfig.cpp [8/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time 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tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o.d -o tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o -c ../tests/src/container/test_BitConversion.cpp [11/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o -c ../src/align/ChainSeedsConfig.cpp [12/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -MF tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o.d -o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o -c ../tests/src/align/test_BandedChainAlign.cpp [13/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o -c ../src/align/EdlibAlign.cpp [14/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-MF src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o -c ../src/align/LocalAlignment.cpp [17/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o -c ../src/align/Seed.cpp [18/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o -c ../src/align/BandedChainAlignment.cpp [19/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o -c ../src/align/AffineAlignment.cpp [20/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o -c ../src/align/FindSeeds.cpp [21/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o -c ../src/align/Seeds.cpp [22/182] cc -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wc++-compat -Wno-unused-parameter -Wno-unused-variable -Wno-sign-compare -Wno-unused-but-set-variable -march=armv8.2-a -MD -MQ src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o -MF src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o.d -o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o -c ../src/align/cssw/ssw.c [23/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o -c ../src/align/SparseAlignment.cpp [24/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o -c ../src/align/LinearAlignment.cpp [25/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o -c ../tests/src/algorithm/test_Heteroduplex.cpp [26/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o -c ../src/align/ChainSeeds.cpp [27/182] c++ -Isrc/libpbcopper.so.2.3.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o -MF src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o.d -o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o -c ../src/align/cssw/ssw_cpp.cpp [28/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o.d -o tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o -c ../tests/src/algorithm/test_LSHIndex.cpp In file included from /usr/include/string.h:548, from /usr/include/c++/15/cstring:48, from ../include/pbcopper/third-party/robin_hood/robin_hood.h:43, from ../include/pbcopper/container/RHUnordered.h:6, from ../include/pbcopper/container/Unordered.h:6, from ../include/pbcopper/algorithm/KMerIndex.h:6, from ../tests/src/algorithm/test_LSHIndex.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘KeyT PacBio::Algorithm::LSHIndex::hashMemory(const T&, int64_t) const [with T = long unsigned int; KeyT = long unsigned int; IdT = unsigned int]’ at ../include/pbcopper/algorithm/LSHIndex.h:630:24, inlined from ‘KeyT PacBio::Algorithm::LSHIndex::hashIndex(const Sketch&, int64_t, int64_t) const [with Sketch = std::vector >; KeyT = long unsigned int; IdT = unsigned int]’ at ../include/pbcopper/algorithm/LSHIndex.h:678:30: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:33: warning: ‘void* __builtin___memcpy_chk(void*, const void*, long unsigned int, long unsigned int)’ writing 8 or more bytes into a region of size 4 overflows the destination [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [29/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o -MF tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o.d -o 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src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,-soname,libpbcopper.so.2.3.0 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. [126/182] /usr/bin/meson --internal symbolextractor /build/reproducible-path/pbcopper-2.3.0+dfsg/build src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0 src/libpbcopper.so.2.3.0.p/libpbcopper.so.2.3.0.symbols [127/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o -c ../tests/src/cli2/test_OptionTranslator.cpp [128/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Frames.cpp.o -MF tests/pbcopper_test.p/src_data_test_Frames.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Frames.cpp.o -c ../tests/src/data/test_Frames.cpp [129/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o -c ../tests/src/cli2/test_InterfaceHelpPrinter.cpp [130/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o -c ../tests/src/cli2/test_CommandLineParser.cpp [131/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -MF tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o.d -o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -c ../tests/src/data/test_GenomicInterval.cpp [132/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o -MF tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o.d -o tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o -c ../tests/src/data/test_IntervalTree.cpp [133/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion 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-c ../tests/src/cli2/test_CLI.cpp [135/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o -MF tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o.d -o tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o -c ../tests/src/data/test_QualityValues.cpp [136/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Interval.cpp.o -MF tests/pbcopper_test.p/src_data_test_Interval.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Interval.cpp.o -c ../tests/src/data/test_Interval.cpp [137/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_MovieName.cpp.o -MF tests/pbcopper_test.p/src_data_test_MovieName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_MovieName.cpp.o -c ../tests/src/data/test_MovieName.cpp [138/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o -MF tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o.d -o tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o -c ../tests/src/math/test_FishersExact.cpp [139/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict 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tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o.d -o tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o -c ../tests/src/math/test_ConfusionMatrix.cpp [141/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_json_test_JSON.cpp.o -MF tests/pbcopper_test.p/src_json_test_JSON.cpp.o.d -o tests/pbcopper_test.p/src_json_test_JSON.cpp.o -c ../tests/src/json/test_JSON.cpp [142/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o -MF tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o -c ../tests/src/data/test_RSMovieName.cpp [143/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Cigar.cpp.o -MF tests/pbcopper_test.p/src_data_test_Cigar.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Cigar.cpp.o -c ../tests/src/data/test_Cigar.cpp [144/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_SNR.cpp.o -MF tests/pbcopper_test.p/src_data_test_SNR.cpp.o.d -o tests/pbcopper_test.p/src_data_test_SNR.cpp.o -c ../tests/src/data/test_SNR.cpp [145/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_ReadName.cpp.o -MF tests/pbcopper_test.p/src_data_test_ReadName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_ReadName.cpp.o -c ../tests/src/data/test_ReadName.cpp [146/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -MF tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o.d -o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -c ../tests/src/data/test_MappedRead.cpp [147/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o -MF tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o -c ../tests/src/data/test_RSReadName.cpp [148/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o -c ../tests/src/pbmer/test_Kmer.cpp [149/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_logging_test_Logging.cpp.o -MF tests/pbcopper_test.p/src_logging_test_Logging.cpp.o.d -o tests/pbcopper_test.p/src_logging_test_Logging.cpp.o -c ../tests/src/logging/test_Logging.cpp [150/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o -c ../tests/src/pbmer/test_DbgNode.cpp [151/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -c ../tests/src/parallel/test_FireAndForget.cpp [152/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -c ../tests/src/pbmer/test_KFGraph.cpp [153/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -c ../tests/src/pbmer/test_Mers.cpp [154/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -c ../tests/src/pbmer/test_Parser.cpp [155/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -c ../tests/src/pbmer/test_DnaBit.cpp [156/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -c ../tests/src/parallel/test_FireAndForgetIndexed.cpp ../tests/src/parallel/test_FireAndForgetIndexed.cpp: In member function ‘virtual void Parallel_FireAndForgetIndexed_strings_Test::TestBody()’: ../tests/src/parallel/test_FireAndForgetIndexed.cpp:15:25: warning: unused variable ‘numElements’ [-Wunused-variable] 15 | static const size_t numElements = 10000; | ^~~~~~~~~~~ ../tests/src/parallel/test_FireAndForgetIndexed.cpp:28:10: warning: variable ‘Submit’ set but not used [-Wunused-but-set-variable] 28 | auto Submit = [&vec](size_t index, size_t data) { vec[index] += data; }; | ^~~~~~ [157/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -c ../tests/src/parallel/test_WorkQueue.cpp [158/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -c ../tests/src/pbmer/test_Dbg.cpp [159/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Read.cpp.o -MF tests/pbcopper_test.p/src_data_test_Read.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Read.cpp.o -c ../tests/src/data/test_Read.cpp [160/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Base64.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -c ../tests/src/utility/test_Base64.cpp [161/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o -c ../tests/src/utility/test_FastMod.cpp [162/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -MF tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -c ../tests/src/poa/test_SparsePoa.cpp [163/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -MF tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -c ../tests/src/poa/test_PoaConsensus.cpp [164/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -c ../tests/src/utility/test_MinMax.cpp [165/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -c ../tests/src/utility/test_FileUtils.cpp [166/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o -c ../tests/src/utility/test_Intrinsics.cpp [167/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -MF tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -c ../tests/src/utility/test_OStreamRedirect.cpp [168/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -c ../tests/src/utility/test_Alarm.cpp [169/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -c ../tests/src/utility/test_Ssize.cpp [170/182] rm -f src/libpbcopper.a && gcc-ar csrD src/libpbcopper.a src/libpbcopper.so.2.3.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.3.0.p/algorithm_KMerIndex.cpp.o src/libpbcopper.so.2.3.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.3.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.3.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.3.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_Seed.cpp.o src/libpbcopper.so.2.3.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.3.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.3.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.3.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.3.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.3.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.3.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.3.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.3.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.3.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.3.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.3.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.3.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.3.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.3.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.3.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.3.0.p/data_Frames.cpp.o src/libpbcopper.so.2.3.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.3.0.p/data_Interval.cpp.o src/libpbcopper.so.2.3.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.3.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.3.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.3.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.3.0.p/data_Read.cpp.o src/libpbcopper.so.2.3.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.3.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.3.0.p/data_SNR.cpp.o src/libpbcopper.so.2.3.0.p/data_Strand.cpp.o src/libpbcopper.so.2.3.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.3.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.3.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.3.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.3.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.3.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.3.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.3.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.3.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.3.0.p/reports_Report.cpp.o src/libpbcopper.so.2.3.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.3.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.3.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.3.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.3.0.p/third-party_htslib_kfunc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.3.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.3.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.3.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.3.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.3.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.3.0.p/utility_FastMod.cpp.o src/libpbcopper.so.2.3.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.3.0.p/utility_Random.cpp.o src/libpbcopper.so.2.3.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.3.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.3.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o src/libpbcopper.so.2.3.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o [171/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o -c ../tests/src/utility/test_Overloaded.cpp [172/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -c ../tests/src/utility/test_Stopwatch.cpp [173/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o -c ../tests/src/utility/test_Shuffle.cpp [174/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o -c ../tests/src/utility/test_MoveAppend.cpp [175/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -MF tests/pbcopper_test.p/src_qgram_test_Index.cpp.o.d -o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o -c ../tests/src/qgram/test_Index.cpp [176/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -MF tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o.d -o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -c ../tests/src/third-party/sparc/test_SparcConsensus.cpp [177/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -MF tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -c ../tests/src/utility/test_TimeReporter.cpp [178/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -c ../tests/src/utility/test_StringUtils.cpp [179/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -MF tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -c ../tests/src/utility/test_PartitionElements.cpp [180/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -c ../tests/src/utility/test_MoveInsert.cpp [181/182] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_reports_test_Report.cpp.o -MF tests/pbcopper_test.p/src_reports_test_Report.cpp.o.d -o tests/pbcopper_test.p/src_reports_test_Report.cpp.o -c ../tests/src/reports/test_Report.cpp [182/182] c++ -o tests/pbcopper_test tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o tests/pbcopper_test.p/src_algorithm_test_KMerIndex.cpp.o tests/pbcopper_test.p/src_algorithm_test_LSHIndex.cpp.o tests/pbcopper_test.p/src_align_test_Alignment.cpp.o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o tests/pbcopper_test.p/src_align_test_Seeds.cpp.o tests/pbcopper_test.p/src_container_test_BitContainer.cpp.o tests/pbcopper_test.p/src_container_test_BitConversion.cpp.o tests/pbcopper_test.p/src_container_test_BitmaskContainer.cpp.o tests/pbcopper_test.p/src_container_test_CapacityPointer.cpp.o tests/pbcopper_test.p/src_container_test_Contains.cpp.o tests/pbcopper_test.p/src_container_test_DNAString.cpp.o tests/pbcopper_test.p/src_container_test_Unordered.cpp.o tests/pbcopper_test.p/src_container_test_RHUnordered.cpp.o tests/pbcopper_test.p/src_cuda_test_AsciiConversion.cpp.o tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o tests/pbcopper_test.p/src_cli2_test_Interface.cpp.o tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_Results.cpp.o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o tests/pbcopper_test.p/src_data_test_Cigar.cpp.o tests/pbcopper_test.p/src_data_test_Frames.cpp.o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o tests/pbcopper_test.p/src_data_test_Interval.cpp.o tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o tests/pbcopper_test.p/src_data_test_MovieName.cpp.o tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o tests/pbcopper_test.p/src_data_test_Read.cpp.o tests/pbcopper_test.p/src_data_test_ReadName.cpp.o tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o tests/pbcopper_test.p/src_data_test_SNR.cpp.o tests/pbcopper_test.p/src_json_test_JSON.cpp.o tests/pbcopper_test.p/src_library_test_Library.cpp.o tests/pbcopper_test.p/src_logging_test_Logging.cpp.o tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o tests/pbcopper_test.p/src_reports_test_Report.cpp.o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o tests/pbcopper_test.p/src_utility_test_FastMod.cpp.o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o tests/pbcopper_test.p/src_utility_test_Intrinsics.cpp.o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o tests/pbcopper_test.p/src_utility_test_Overloaded.cpp.o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pbcopper-2.3.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 '-Wl,-rpath,$ORIGIN/../src' -Wl,--start-group src/libpbcopper.so.2.3.0 /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a -Wl,--end-group -pthread debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' cd build && meson test --no-rebuild --print-errorlogs 1/2 pbcopper formatting check OK 0.02s 2/2 pbcopper gtest unittests OK 8.71s Ok: 2 Fail: 0 Full log written to /build/reproducible-path/pbcopper-2.3.0+dfsg/build/meson-logs/testlog.txt make[1]: Leaving directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install -O--builddirectory=build cd build && DESTDIR=/build/reproducible-path/pbcopper-2.3.0\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install [1/9] Generating src/utility/PbcopperGitHash.cpp with a custom command [2/8] Generating src/LibraryGitHash.h with a custom command [2/3] Installing files Installing src/libpbcopper.so.2.3.0 to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu Installing src/libpbcopper.a to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/LibraryInfo.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/PbcopperConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/Heteroduplex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/KMerIndex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/LSHIndex.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/algorithm/internal/HeteroduplexUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/algorithm/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/AffineAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/AlignConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/BandedChainAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/ChainSeeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/ChainSeedsConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/EdlibAlign.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/FindSeeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/GlobalLocalAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/LinearAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/LocalAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/PairwiseAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/Seed.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/Seeds.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/SparseAlignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/internal/BCAlignBlocks.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/internal/BCAlignImpl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/cssw/ssw.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/cssw Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/align/cssw/ssw_cpp.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/cssw Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/CLI.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Interface.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/MultiToolInterface.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Option.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/OptionValue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/OptionGroup.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/PositionalArgument.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Result.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Results.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/ResultsHandler.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/Tool.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/VersionPrinterCallback.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/BuiltinOptions.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/CommandLineParser.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/HelpMetrics.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/HiddenOptionMode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceHelpPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceHelpPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/OptionData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/OptionTranslator.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentData.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentTranslator.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cli2/internal/VersionPrinter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitContainer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitConversion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/BitmaskContainer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/CapacityPointer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/Contains.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/DNAString.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/RHUnordered.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/container/Unordered.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/container Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cuda/AsciiConversion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cuda Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/cuda/Cuda.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/cuda Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/dagcon/Alignment.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/dagcon Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/dagcon/AlignmentGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/dagcon Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Accuracy.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/CCSTag.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Cigar.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/CigarOperation.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Clipping.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/FrameCodec.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/FrameEncoders.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Frames.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/GenomicInterval.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Interval.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/IntervalTree.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/LocalContextFlags.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/MappedRead.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/MovieName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Orientation.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Position.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/QualityValue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/QualityValues.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Read.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/ReadId.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/ReadName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/RSMovieName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/RSReadName.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/SNR.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Strand.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/Zmw.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ClippingImpl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/MovieName-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/data/internal/RSMovieName-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/json/JSON.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/json Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/library/Bundle.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/library Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/library/Info.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/library Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/Logging.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogConfig.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogField.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogLevel.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/logging/LogMessage.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/math/ConfusionMatrix.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/math Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/math/FishersExact.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/math Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/FireAndForget.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/FireAndForgetIndexed.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/ThreadCount.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/parallel/WorkQueue.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Bubble.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Dbg.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/DbgNode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/DnaBit.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Kmer.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Mers.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/Parser.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/SparseHaplotype.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/KFGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/pbmer/KFNode.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/pbmer Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/PoaConsensus.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/PoaGraph.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/RangeFinder.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/poa/SparsePoa.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/poa Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/reports/Report.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/reports Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/Index.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/IndexHit.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/IndexHits.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/internal/Hashing-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/qgram/internal/Index-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/edlib.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/htslib/kfunc.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/htslib Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/kxsort/kxsort.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/kxsort Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/ksw2/kalloc.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/ksw2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/ksw2/ksw2.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/ksw2 Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/rigtorp/MPMCQueue.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/rigtorp Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/rigtorp/SPSCQueue.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/rigtorp Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/robin_hood/robin_hood.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/robin_hood Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/third-party/sparc/sparc.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party/sparc Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Alarm.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Base64.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Deleters.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/FastMod.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/FileUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Intrinsics.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MemoryConsumption.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MinMax.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MoveAppend.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/MoveInsert.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/OStreamRedirect.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Overloaded.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/PartitionElements.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/PbcopperVersion.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Random.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/SafeSubtract.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/SequenceUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Shuffle.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Ssize.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Stopwatch.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/StringUtils.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/TimeReporter.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/Unused.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/internal/FileUtils-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/include/pbcopper/utility/internal/Stopwatch-inl.h to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/third-party/json.hpp to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/include/pbcopper/third-party Installing /build/reproducible-path/pbcopper-2.3.0+dfsg/build/meson-private/pbcopper.pc to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig Installing symlink pointing to libpbcopper.so.2.3.0 to /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libpbcopper.so debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/aarch64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libpbcopper2.3.0/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libpbcopper.a debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libpbcopper.so debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/pbcopper-2.3.0+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/libpbcopper.so.2.3.0 debian/libpbcopper2.3.0/usr/lib/aarch64-linux-gnu PKGDEV=libpbcopper-dev PKGSHL=libpbcopper2.3.0 install -d -m 755 debian/libpbcopper-dev/usr mv debian/tmp/usr/include debian/libpbcopper-dev/usr install -d -m 755 debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libpbcopper-dev/usr/lib/aarch64-linux-gnu/pkgconfig make[1]: Leaving directory '/build/reproducible-path/pbcopper-2.3.0+dfsg' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -a -O--builddirectory=build dh_strip -a -O--builddirectory=build dh_makeshlibs -a -O--builddirectory=build dh_shlibdeps -a -O--builddirectory=build dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dpkg-gencontrol: warning: Depends field of package libpbcopper-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'libpbcopper2.3.0' in '../libpbcopper2.3.0_2.3.0+dfsg-4_arm64.deb'. dpkg-deb: building package 'libpbcopper-dev' in '../libpbcopper-dev_2.3.0+dfsg-4_arm64.deb'. dpkg-deb: building package 'libpbcopper2.3.0-dbgsym' in '../libpbcopper2.3.0-dbgsym_2.3.0+dfsg-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pbcopper_2.3.0+dfsg-4_arm64.buildinfo dpkg-genchanges --build=binary -O../pbcopper_2.3.0+dfsg-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2213620 and its subdirectories I: Current time: Sat Nov 14 15:04:16 -12 2026 I: pbuilder-time-stamp: 1794711856 Sun Oct 12 20:41:18 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Sun Oct 12 20:41:18 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Sun Oct 12 20:43:58 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Sun Oct 12 20:43:58 UTC 2025 I: pbcopper_2.3.0+dfsg-4_arm64.changes: Format: 1.8 Date: Sun, 05 Oct 2025 23:30:23 +0200 Source: pbcopper Binary: libpbcopper-dev libpbcopper2.3.0 libpbcopper2.3.0-dbgsym Architecture: arm64 Version: 2.3.0+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libpbcopper-dev - data structures, algorithms, and utilities for C++ applications - libpbcopper2.3.0 - data structures, algorithms, and utilities for C++ applications Closes: 1117413 Changes: pbcopper (2.3.0+dfsg-4) unstable; urgency=medium . * Team upload. * d/control: build depends on libboost-iostreams-dev. (Closes: #1117413) Checksums-Sha1: d6310e12905937bc2524af104b86516c8b6456cc 983552 libpbcopper-dev_2.3.0+dfsg-4_arm64.deb f05484ca067e8a3458b6d415b43fc460383d6725 13290556 libpbcopper2.3.0-dbgsym_2.3.0+dfsg-4_arm64.deb fc1539ac661ddd114673f9ff390c5cbbc65ebd30 622812 libpbcopper2.3.0_2.3.0+dfsg-4_arm64.deb d2c2e0fc08168222bcd9c064673bd8555e891591 7974 pbcopper_2.3.0+dfsg-4_arm64.buildinfo Checksums-Sha256: f723301fb55efe3a880bb06045ca16f92877de6a93c59e209a1fc821657dfbbc 983552 libpbcopper-dev_2.3.0+dfsg-4_arm64.deb c1b430de2e09df69a7d3ab2dfa0e63946a2fd5ecf65dfbfd76858b83b3cb26fe 13290556 libpbcopper2.3.0-dbgsym_2.3.0+dfsg-4_arm64.deb 3d45c36ac6634d76148ff9d9e815e152b759e8cb6bf66f7a9c095dc70ef4685b 622812 libpbcopper2.3.0_2.3.0+dfsg-4_arm64.deb 1bfd1644f4c369deff327c5b3f34361199a73a78967a559509576b39eaf7cb8a 7974 pbcopper_2.3.0+dfsg-4_arm64.buildinfo Files: e1f9c9b63b2c3b78a89875b530583367 983552 libdevel optional libpbcopper-dev_2.3.0+dfsg-4_arm64.deb f40d8b700b38a77a7af9d9681c2d49dd 13290556 debug optional libpbcopper2.3.0-dbgsym_2.3.0+dfsg-4_arm64.deb d132ba3e746f32f4d6640d42c8ba3407 622812 libs optional libpbcopper2.3.0_2.3.0+dfsg-4_arm64.deb a880db48eef6a6b3042196e0d8a718b3 7974 science optional pbcopper_2.3.0+dfsg-4_arm64.buildinfo Sun Oct 12 20:43:59 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_5-124516.service; invocation ID: e5d03dfefab24b8bb1f2e09cd9f65544 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5ZMZobBm/pbcopper_2.3.0+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5ZMZobBm/pbcopper_2.3.0+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5ZMZobBm/pbcopper_2.3.0+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5ZMZobBm/b1/pbcopper_2.3.0+dfsg-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.5ZMZobBm/b2/pbcopper_2.3.0+dfsg-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 200ms CPU time consumed: 169ms Memory peak: 17.9M (swap: 0B) Sun Oct 12 20:43:59 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sun Oct 12 20:43:59 UTC 2025 I: pbcopper from forky built successfully and reproducibly on arm64. Sun Oct 12 20:44:00 UTC 2025 I: Removing signed pbcopper_2.3.0+dfsg-4_arm64.buildinfo.asc files: removed './b1/pbcopper_2.3.0+dfsg-4_arm64.buildinfo.asc' removed './b2/pbcopper_2.3.0+dfsg-4_arm64.buildinfo.asc'