Fri Sep 26 14:11:43 UTC 2025 I: starting to build phipack/forky/arm64 on jenkins on '2025-09-26 14:11' Fri Sep 26 14:11:43 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/120706/console.log Fri Sep 26 14:11:43 UTC 2025 I: Downloading source for forky/phipack=0.0.20160614-5 --2025-09-26 14:11:43-- http://deb.debian.org/debian/pool/main/p/phipack/phipack_0.0.20160614-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2021 (2.0K) [text/prs.lines.tag] Saving to: ‘phipack_0.0.20160614-5.dsc’ 0K . 100% 239M=0s 2025-09-26 14:11:43 (239 MB/s) - ‘phipack_0.0.20160614-5.dsc’ saved [2021/2021] Fri Sep 26 14:11:43 UTC 2025 I: phipack_0.0.20160614-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: phipack Binary: phipack Architecture: any Version: 0.0.20160614-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://www.maths.otago.ac.nz/~dbryant/software/phimanual.pdf Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/phipack Vcs-Git: https://salsa.debian.org/med-team/phipack.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: phipack deb science optional arch=any Checksums-Sha1: 54f764223d3d92f91501a88ab643f6ce2b0d8ab1 54192 phipack_0.0.20160614.orig.tar.xz fd58cd8dfdbe3aa4d67cd2059176fabd24d56544 6792 phipack_0.0.20160614-5.debian.tar.xz Checksums-Sha256: 3942fa6b4c19b01d76a480321fe3d155bce2d0b02ac1f4c294f4418d22110952 54192 phipack_0.0.20160614.orig.tar.xz 6a4c719be1943400452c2be9b9aed7f1b3ce5d674b957a93ee5880484ba9de36 6792 phipack_0.0.20160614-5.debian.tar.xz Files: b58097108c19846ebd8473be57f6cf9c 54192 phipack_0.0.20160614.orig.tar.xz 342d20eac4d2dbbb730230abac692b90 6792 phipack_0.0.20160614-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl9YdxARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGhDxAAkxKPhn3zHShjCnprjbHU7TZWtQnXGvYW xxlOnwNICitkVO+/ya/NGN78qKNMVFm9+WuPju+wKRSCHDYUTw5quQgzOcx+bkZ8 F6S1CrBx/c9zHdiDFngDGfONQ+6YC+NdnHCX66XnozIewyTOV8dVAttN5QXkXCJp rqXHf/7lLp7A15SJyktlVeByNpcDIpm2KplUMy6NCYOX54cC6ipm5+6UOld6vePK UfbKoMeH0Ka1h4alyi9FYx/bje735BhDI4lDXgErYb/N+aHxZWFfNXFxFj+rFf+a LNsBHLH49c2IwCP+M083qRWxV5DsGh5emASfjh0myqoev3MxNCNK97wcAC/axLm/ wnUzb2on91w90Fi5/UZENZCtMu4vs1vsR6uarDGgFBRGk+IM9ievZcB4OtknCdv1 S78Hb/o5J45C1p78kZoew1dqAcvWKz038IbPRiGnCReNp2WUP+bWf2nDUCtx/D/4 mirB88nR8A3GCGk4V4TFMopuXSvBScEDnore3HLbWMTXfdmYwfttpkO4orYzqf/f bdmDsysVkxRMFpTGVUzrNnJ46N18y50Fmkx4vPitbcZEbqbZGQvzwEuiK1FPh+iY ZtrHAl0vdvoUB79RuWG63CCD0jwVota/LvpPwGXPIoK2IYKK5en8fBrqFHVaRMI/ MdgqxKKEe/s= =38F6 -----END PGP SIGNATURE----- Fri Sep 26 14:11:43 UTC 2025 I: Checking whether the package is not for us Fri Sep 26 14:11:43 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Fri Sep 26 14:11:43 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Fri Sep 26 14:12:16 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 29 08:34:44 -12 2026 I: pbuilder-time-stamp: 1793306084 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [phipack_0.0.20160614-5.dsc] I: copying [./phipack_0.0.20160614.orig.tar.xz] I: copying [./phipack_0.0.20160614-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./phipack_0.0.20160614-5.dsc: no acceptable signature found dpkg-source: info: extracting phipack in phipack-0.0.20160614 dpkg-source: info: unpacking phipack_0.0.20160614.orig.tar.xz dpkg-source: info: unpacking phipack_0.0.20160614-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying phipack.unsigned.char.fixes.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2796415/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='a4ca56243d0441398cba1a6f3bee1452' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2796415' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EooKthny/pbuilderrc_RkyF --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EooKthny/b1 --logfile b1/build.log phipack_0.0.20160614-5.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2796415/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.0 MB of archives. After unpacking 44.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.27 [92.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 debhelper all 13.27 [940 kB] Fetched 11.0 MB in 0s (80.6 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-3_arm64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.27_all.deb ... Unpacking libdebhelper-perl (13.27) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../24-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.27_all.deb ... Unpacking debhelper (13.27) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.27) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.27) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/phipack-0.0.20160614/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../phipack_0.0.20160614-5_source.changes dpkg-buildpackage: info: source package phipack dpkg-buildpackage: info: source version 0.0.20160614-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j12 clean make[1]: Entering directory '/build/reproducible-path/phipack-0.0.20160614/src' rm -f *.o rm -f Phi rm -f Profile make[1]: Leaving directory '/build/reproducible-path/phipack-0.0.20160614/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src dh_auto_build -O--sourcedirectory=src cd src && make -j12 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/phipack-0.0.20160614/src' gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall normal.c -o normal.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall stats.c -o stats.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall maxChi.c -o maxChi.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall main.c -o main.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall queue.c -o queue.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall graphCode.c -o graphCode.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall fasta.c -o fasta.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall phylip.c -o phylip.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall mem.c -o mem.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall misc.c -o misc.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall pairScore.c -o pairScore.o gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall seqManip.c -o seqManip.o graphCode.c:2:2: warning: '/*' within comment [-Wcomment] 2 | /* This file is part of PhiPack. stats.c: In function 'PHI': stats.c:112:24: warning: variable 'states_j' set but not used [-Wunused-but-set-variable] 112 | int p_i,p_j,states_i,states_j; | ^~~~~~~~ stats.c:112:15: warning: variable 'states_i' set but not used [-Wunused-but-set-variable] 112 | int p_i,p_j,states_i,states_j; | ^~~~~~~~ In file included from main.c:32: normal.h:1: warning: header guard 'NORM' followed by '#define' of a different macro [-Wheader-guard] 1 | #ifndef NORM gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall global.c -o global.o normal.h:2: note: 'NORMAL' is defined here; did you mean 'NORM'? 2 | #define NORMAL gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall profile.c -o profile.o In file included from profile.c:32: normal.h:1: warning: header guard 'NORM' followed by '#define' of a different macro [-Wheader-guard] 1 | #ifndef NORM normal.h:2: note: 'NORMAL' is defined here; did you mean 'NORM'? 2 | #define NORMAL gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -o Profile normal.o stats.o fasta.o phylip.o mem.o misc.o pairScore.o seqManip.o global.o profile.o -lm -Wl,-z,relro -Wl,-z,now cp Profile ../ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -o Phi normal.o stats.o maxChi.o main.o queue.o graphCode.o fasta.o phylip.o mem.o misc.o pairScore.o seqManip.o global.o -lm -Wl,-z,relro -Wl,-z,now cp Phi ../ cd ppma_2_bmp && make make[2]: Entering directory '/build/reproducible-path/phipack-0.0.20160614/src/ppma_2_bmp' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/phipack-0.0.20160614=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -o ppma_2_bmp ppma_io.C bmp_io.C ppma_2_bmp.C -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/phipack-0.0.20160614/src/ppma_2_bmp' cp ppma_2_bmp/ppma_2_bmp ../ make[1]: Leaving directory '/build/reproducible-path/phipack-0.0.20160614/src' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_auto_install --destdir=debian/phipack/ -O--sourcedirectory=src dh_install -O--sourcedirectory=src dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installexamples -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dwz: debian/phipack/usr/lib/debian-med/bin/ppma_2_bmp: DWARF compression not beneficial - old size 158401 new size 159661 dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'phipack' in '../phipack_0.0.20160614-5_arm64.deb'. dpkg-deb: building package 'phipack-dbgsym' in '../phipack-dbgsym_0.0.20160614-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../phipack_0.0.20160614-5_arm64.buildinfo dpkg-genchanges --build=binary -O../phipack_0.0.20160614-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2796415 and its subdirectories I: Current time: Thu Oct 29 08:35:16 -12 2026 I: pbuilder-time-stamp: 1793306116 Fri Sep 26 14:12:17 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Fri Sep 26 14:12:17 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Fri Sep 26 14:12:51 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Fri Sep 26 14:12:52 UTC 2025 I: phipack_0.0.20160614-5_arm64.changes: Format: 1.8 Date: Wed, 09 Sep 2020 08:30:55 +0200 Source: phipack Binary: phipack phipack-dbgsym Architecture: arm64 Version: 0.0.20160614-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: phipack - PHI test and other tests of recombination Closes: 968242 969552 Changes: phipack (0.0.20160614-5) unstable; urgency=medium . * Add salsa-ci file (routine-update) * Fix compiler variable to enable cross building Closes: #968242 * Force signed char on every architecture (Thanks a lot to Lennart Sorensen) Closes: #969552 Checksums-Sha1: 04f7c3c5c677c9c599e87e5f18f431225690ed24 192216 phipack-dbgsym_0.0.20160614-5_arm64.deb 3c8b5173020f6bc9b2d66143a7cb1fffd4c2f1a0 4873 phipack_0.0.20160614-5_arm64.buildinfo 47a3d8c50da385af9813f878c631636ef33aba54 51200 phipack_0.0.20160614-5_arm64.deb Checksums-Sha256: 33bc08e37dbd51e452e17635b1b176c14ba4a900326fe5bce370eac5ba52c863 192216 phipack-dbgsym_0.0.20160614-5_arm64.deb 0fce46739503c26ce330df7d5a2da469156e24920c9ebd966c2d1d4e6d6868bf 4873 phipack_0.0.20160614-5_arm64.buildinfo b866e686b691ab076b6fc789ef703924e066507dbe4054d17a5d5dbf513dcbc4 51200 phipack_0.0.20160614-5_arm64.deb Files: f57314b25dcf300d1adaf138f3553b56 192216 debug optional phipack-dbgsym_0.0.20160614-5_arm64.deb b14eb8c2615379040a6a95fcbabefb8a 4873 science optional phipack_0.0.20160614-5_arm64.buildinfo 2661aa30a02f6f21120725d8c93c3d61 51200 science optional phipack_0.0.20160614-5_arm64.deb Fri Sep 26 14:12:52 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_6-120706.service; invocation ID: 24ab44bd090c4263a4c3ce00b5ac474a # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.EooKthny/phipack_0.0.20160614-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.EooKthny/phipack_0.0.20160614-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.EooKthny/phipack_0.0.20160614-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.EooKthny/b1/phipack_0.0.20160614-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.EooKthny/b2/phipack_0.0.20160614-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 202ms CPU time consumed: 166ms Memory peak: 17.5M (swap: 0B) Fri Sep 26 14:12:53 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Sep 26 14:12:53 UTC 2025 I: phipack from forky built successfully and reproducibly on arm64. Fri Sep 26 14:12:54 UTC 2025 I: Removing signed phipack_0.0.20160614-5_arm64.buildinfo.asc files: removed './b1/phipack_0.0.20160614-5_arm64.buildinfo.asc' removed './b2/phipack_0.0.20160614-5_arm64.buildinfo.asc'