Wed Oct 1 20:49:32 UTC 2025 I: starting to build pullseq/forky/arm64 on jenkins on '2025-10-01 20:49' Wed Oct 1 20:49:32 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/99672/console.log Wed Oct 1 20:49:32 UTC 2025 I: Downloading source for forky/pullseq=1.0.2-5 --2025-10-01 20:49:32-- http://deb.debian.org/debian/pool/main/p/pullseq/pullseq_1.0.2-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1348 (1.3K) [text/prs.lines.tag] Saving to: ‘pullseq_1.0.2-5.dsc’ 0K . 100% 167M=0s 2025-10-01 20:49:32 (167 MB/s) - ‘pullseq_1.0.2-5.dsc’ saved [1348/1348] Wed Oct 1 20:49:32 UTC 2025 I: pullseq_1.0.2-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: pullseq Binary: pullseq Architecture: any Version: 1.0.2-5 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/bcthomas/pullseq Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/pullseq Vcs-Git: https://salsa.debian.org/med-team/pullseq.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libpcre2-dev, zlib1g-dev Package-List: pullseq deb science optional arch=any Checksums-Sha1: fcfc4b994c29cb5b504c8e7503eba12d569d454e 1408480 pullseq_1.0.2.orig.tar.gz 8b9ef948f1b3e124eba973e83104c1d194beece7 8904 pullseq_1.0.2-5.debian.tar.xz Checksums-Sha256: a295d7e0e2d64ed05d293d795d1716376707e465f2c42ede6454f27db586c85f 1408480 pullseq_1.0.2.orig.tar.gz dafe4c70393b358df0c2ce5eb0f79eda52344ca860a5ca6f8dcf8570e11deaca 8904 pullseq_1.0.2-5.debian.tar.xz Files: a4ef6e5b4b5c77be2ef5d444c44fb6c0 1408480 pullseq_1.0.2.orig.tar.gz a3c2152af3d00472ac5042ee0e5368eb 8904 pullseq_1.0.2-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZfNqCAAKCRAqJ5BL1yQ+ 2uDUAP9p6beVcqjYofyUgsCmVPr6U/yqhV9lvusLRGcCOYBfVQD9FrC468ldqD/B iQJlLfPdrc2K87/jY3zUcB9f5joSLQU= =Xvzr -----END PGP SIGNATURE----- Wed Oct 1 20:49:32 UTC 2025 I: Checking whether the package is not for us Wed Oct 1 20:49:32 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Wed Oct 1 20:49:32 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Wed Oct 1 20:50:10 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 1 08:49:35 -12 2025 I: pbuilder-time-stamp: 1759351775 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pullseq_1.0.2-5.dsc] I: copying [./pullseq_1.0.2.orig.tar.gz] I: copying [./pullseq_1.0.2-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pullseq_1.0.2-5.dsc: no acceptable signature found dpkg-source: info: extracting pullseq in pullseq-1.0.2 dpkg-source: info: unpacking pullseq_1.0.2.orig.tar.gz dpkg-source: info: unpacking pullseq_1.0.2-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying pcre2.patch dpkg-source: info: applying getc.patch dpkg-source: info: applying fixup-implicit-function-declaration.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1081781/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='20bb959fa75a4a6d9a99cb7876956a1d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1081781' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cW5lHxxs/pbuilderrc_8mHQ --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cW5lHxxs/b1 --logfile b1/build.log pullseq_1.0.2-5.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1081781/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libpcre2-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20021 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libpcre2-dev; however: Package libpcre2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 13.2 MB of archives. After unpacking 50.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-1 [94.3 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.27 [92.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 debhelper all 13.27 [940 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libpcre2-16-0 arm64 10.46-1 [247 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libpcre2-32-0 arm64 10.46-1 [238 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libpcre2-posix3 arm64 10.46-1 [64.1 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libpcre2-dev arm64 10.46-1 [750 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 13.2 MB in 0s (104 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20021 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-1_arm64.deb ... Unpacking bsdextrautils (2.41.2-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.27_all.deb ... Unpacking libdebhelper-perl (13.27) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../24-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.27_all.deb ... Unpacking debhelper (13.27) ... Selecting previously unselected package libpcre2-16-0:arm64. Preparing to unpack .../29-libpcre2-16-0_10.46-1_arm64.deb ... Unpacking libpcre2-16-0:arm64 (10.46-1) ... Selecting previously unselected package libpcre2-32-0:arm64. Preparing to unpack .../30-libpcre2-32-0_10.46-1_arm64.deb ... Unpacking libpcre2-32-0:arm64 (10.46-1) ... Selecting previously unselected package libpcre2-posix3:arm64. Preparing to unpack .../31-libpcre2-posix3_10.46-1_arm64.deb ... Unpacking libpcre2-posix3:arm64 (10.46-1) ... Selecting previously unselected package libpcre2-dev:arm64. Preparing to unpack .../32-libpcre2-dev_10.46-1_arm64.deb ... Unpacking libpcre2-dev:arm64 (10.46-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../33-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.27) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libpcre2-16-0:arm64 (10.46-1) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libpcre2-32-0:arm64 (10.46-1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpcre2-posix3:arm64 (10.46-1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libpcre2-dev:arm64 (10.46-1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.27) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pullseq-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pullseq_1.0.2-5_source.changes dpkg-buildpackage: info: source package pullseq dpkg-buildpackage: info: source version 1.0.2-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:12: installing './compile' configure.ac:48: installing './config.guess' configure.ac:48: installing './config.sub' configure.ac:7: installing './install-sh' configure.ac:7: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for gzopen in -lz... yes checking for pcre2_config_8 in -lpcre2-8... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for pcre2.h... no checking for inttypes.h... (cached) yes checking for limits.h... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking for ptrdiff_t... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for strlen... yes checking for memset... yes checking for strchr... yes checking for strerror... yes checking for strtol... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/config.h config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/pullseq-1.0.2' Making all in src make[2]: Entering directory '/build/reproducible-path/pullseq-1.0.2/src' make all-am make[3]: Entering directory '/build/reproducible-path/pullseq-1.0.2/src' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o hash.o hash.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o output.o output.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o size_filter.o size_filter.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o search_header.o search_header.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o file_read.o file_read.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o pull_by_re.o pull_by_re.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o pull_by_name.o pull_by_name.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o pull_by_size.o pull_by_size.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o pullseq.o pullseq.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o cmpseq.o cmpseq.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o seqdiff.o seqdiff.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -c -o seqdiff_results.o seqdiff_results.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -Wl,-z,relro -Wl,-z,now -lpcre2-8 -o pullseq hash.o output.o size_filter.o search_header.o file_read.o pull_by_re.o pull_by_name.o pull_by_size.o pullseq.o -lpcre2-8 -lz gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pullseq-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fcommon -Wl,-z,relro -Wl,-z,now -lpcre2-8 -o seqdiff cmpseq.o file_read.o hash.o seqdiff.o seqdiff_results.o output.o -lpcre2-8 -lz make[3]: Leaving directory '/build/reproducible-path/pullseq-1.0.2/src' make[2]: Leaving directory '/build/reproducible-path/pullseq-1.0.2/src' make[2]: Entering directory '/build/reproducible-path/pullseq-1.0.2' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/reproducible-path/pullseq-1.0.2' make[1]: Leaving directory '/build/reproducible-path/pullseq-1.0.2' dh_auto_test make -j12 check TESTSUITEFLAGS="-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/pullseq-1.0.2' Making check in src make[2]: Entering directory '/build/reproducible-path/pullseq-1.0.2/src' make[2]: Leaving directory '/build/reproducible-path/pullseq-1.0.2/src' make[2]: Entering directory '/build/reproducible-path/pullseq-1.0.2' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/reproducible-path/pullseq-1.0.2' make[1]: Leaving directory '/build/reproducible-path/pullseq-1.0.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pullseq/ make -j12 install DESTDIR=/build/reproducible-path/pullseq-1.0.2/debian/pullseq AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/pullseq-1.0.2' Making install in src make[2]: Entering directory '/build/reproducible-path/pullseq-1.0.2/src' make[3]: Entering directory '/build/reproducible-path/pullseq-1.0.2/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/pullseq-1.0.2/debian/pullseq/usr/bin' /usr/bin/install -c pullseq seqdiff '/build/reproducible-path/pullseq-1.0.2/debian/pullseq/usr/bin' make[3]: Leaving directory '/build/reproducible-path/pullseq-1.0.2/src' make[2]: Leaving directory '/build/reproducible-path/pullseq-1.0.2/src' make[2]: Entering directory '/build/reproducible-path/pullseq-1.0.2' make[3]: Entering directory '/build/reproducible-path/pullseq-1.0.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/pullseq-1.0.2' make[2]: Leaving directory '/build/reproducible-path/pullseq-1.0.2' make[1]: Leaving directory '/build/reproducible-path/pullseq-1.0.2' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pullseq-dbgsym' in '../pullseq-dbgsym_1.0.2-5_arm64.deb'. dpkg-deb: building package 'pullseq' in '../pullseq_1.0.2-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pullseq_1.0.2-5_arm64.buildinfo dpkg-genchanges --build=binary -O../pullseq_1.0.2-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1081781 and its subdirectories I: Current time: Wed Oct 1 08:50:09 -12 2025 I: pbuilder-time-stamp: 1759351809 Wed Oct 1 20:50:10 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Wed Oct 1 20:50:10 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Wed Oct 1 20:51:03 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Wed Oct 1 20:51:03 UTC 2025 I: pullseq_1.0.2-5_arm64.changes: Format: 1.8 Date: Fri, 15 Mar 2024 02:45:24 +0530 Source: pullseq Binary: pullseq pullseq-dbgsym Architecture: arm64 Version: 1.0.2-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: pullseq - Extract sequence from a fasta or fastq Closes: 1066472 Changes: pullseq (1.0.2-5) unstable; urgency=medium . * Fixup implicit declaration of function (Closes: #1066472) Checksums-Sha1: cf9743077633623a39e3c87960b57904dc2242dd 52696 pullseq-dbgsym_1.0.2-5_arm64.deb c084fa4dbffb65e13b9a13eb0d94bfe39a1d569d 4943 pullseq_1.0.2-5_arm64.buildinfo 138e3afa9952830daa29a0fadcac0abbf9a4cad8 20436 pullseq_1.0.2-5_arm64.deb Checksums-Sha256: 7a15fcc8b8e4effa43271f57c771a111d1e9163ee4091f7d9e083220ae040eca 52696 pullseq-dbgsym_1.0.2-5_arm64.deb 9dd649e99354d04d157cc9c0b1bc051a274b0142ee80552e8ee486a66612430d 4943 pullseq_1.0.2-5_arm64.buildinfo 1f1fb9065eefd894b9a31b47551f61a9563283585cc0b88ec18fd285e6cacde8 20436 pullseq_1.0.2-5_arm64.deb Files: 5a7212cbeaa6673064097b8759acde02 52696 debug optional pullseq-dbgsym_1.0.2-5_arm64.deb 2d623930f08eefecb43e50804d52beb8 4943 science optional pullseq_1.0.2-5_arm64.buildinfo 0a90c986616919fe48fee73ac8fc03a0 20436 science optional pullseq_1.0.2-5_arm64.deb Wed Oct 1 20:51:04 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_10-99672.service; invocation ID: 6b27307ebe0141b194acc76d5114e882 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.cW5lHxxs/pullseq_1.0.2-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.cW5lHxxs/pullseq_1.0.2-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.cW5lHxxs/pullseq_1.0.2-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.cW5lHxxs/b1/pullseq_1.0.2-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.cW5lHxxs/b2/pullseq_1.0.2-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 215ms CPU time consumed: 174ms Memory peak: 17.4M (swap: 0B) Wed Oct 1 20:51:04 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Wed Oct 1 20:51:04 UTC 2025 I: pullseq from forky built successfully and reproducibly on arm64. Wed Oct 1 20:51:05 UTC 2025 I: Removing signed pullseq_1.0.2-5_arm64.buildinfo.asc files: removed './b1/pullseq_1.0.2-5_arm64.buildinfo.asc' removed './b2/pullseq_1.0.2-5_arm64.buildinfo.asc'