Mon Sep 15 03:59:49 UTC 2025 I: starting to build pymol/forky/arm64 on jenkins on '2025-09-15 03:59' Mon Sep 15 03:59:49 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/121244/console.log Mon Sep 15 03:59:49 UTC 2025 I: Downloading source for forky/pymol=3.1.0+dfsg-1 --2025-09-15 03:59:49-- http://deb.debian.org/debian/pool/main/p/pymol/pymol_3.1.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2307 (2.3K) [text/prs.lines.tag] Saving to: ‘pymol_3.1.0+dfsg-1.dsc’ 0K .. 100% 272M=0s 2025-09-15 03:59:49 (272 MB/s) - ‘pymol_3.1.0+dfsg-1.dsc’ saved [2307/2307] Mon Sep 15 03:59:49 UTC 2025 I: pymol_3.1.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: pymol Binary: pymol, python3-pymol, pymol-data Architecture: any all Version: 3.1.0+dfsg-1 Maintainer: Debichem Team Uploaders: Michael Banck Homepage: https://www.pymol.org Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/debichem-team/pymol Vcs-Git: https://salsa.debian.org/debichem-team/pymol.git Testsuite: autopkgtest Build-Depends: cmake, debhelper-compat (= 13), dh-sequence-python3, freeglut3-dev, libfreetype-dev, libglew-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, python3-setuptools, texlive-latex-base, libxml2-dev Package-List: pymol deb science optional arch=all pymol-data deb science optional arch=all python3-pymol deb python optional arch=any Checksums-Sha1: 32396cf53f9409123ac32a96aa7fdc524e337bb7 21978280 pymol_3.1.0+dfsg.orig.tar.xz 124b693ee1a4e309066ec2f327837d5c2ab82978 57900 pymol_3.1.0+dfsg-1.debian.tar.xz Checksums-Sha256: dcd6d304e6865a618cab1d053ea470f09abcd716c429248d84de59f947102b1d 21978280 pymol_3.1.0+dfsg.orig.tar.xz 199a7e3227fba659093cda7cfdadca5ebc9dfd8233497d94bd9e30566bb1bb9a 57900 pymol_3.1.0+dfsg-1.debian.tar.xz Files: a2896da7deea2ffbd5c103d7e99f85ed 21978280 pymol_3.1.0+dfsg.orig.tar.xz a8321ad6758639dd10f3bc914b48c02d 57900 pymol_3.1.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEnKh3dJ+rLk+paGLs3GhqJ7Q0gbAFAmfX31cACgkQ3GhqJ7Q0 gbAoJg//XLGsbBmaD/gG5utd+whGm+GRPMMa2HGF4jEBJ0joO0rT4SCRZk7mhA8I kQrkPI5G1Pu9XVaDXYcy10kuzbY/WjSmpA8Mk/+K/eT3off/VGxNg4UCdd8IqD4i 7bJPL1IaS78pCBYxMnaFu9+FJTJiMJk5uJS+ykhN2Vp001lwP1Vl4JvUwl2rHrwb 9AMXUa1YHPEWepyaDplXti7UqowzKahADY2hZmU8HKG2DIwWvVV3ywW5L9wpJTe/ JrnasrI6zjfszQ/eP6lbS5hedNJBmS8Kbgn4ATR7iAJIbstR6C3ET0f8V2oYz/lz 9BZ3EjhznAqr2W9nLvFMnXKZaxnS248WIzmJF25F17O2MH+ZfkLqb3cmiUB1uaoj WkxEDq2ALdT4TWDZIJozx81wSTcz3EdKbItChAQqn4f6duOzQfFAMKDGP4hmUFaS jLvoQQy24ykux5sVYcrrXWFT7yeQ1a3Jey0GmCKcSzym4kAqb9EZTBd7Uud8GEv3 aANO8k0Ag+Ijyx7346HU+kbh0PIv6TaDxDlB7N5JKq67heDDrnlRAyaTyDA+SbYY 1oT0TadmhWp1wByXzW5y2waoLgxT+OGBScqhxaWeoUnCCC7SLsqWowHTGR3A0KOG +CyitccyMiDGBdSJ9L1YRzexjemb3BFouV+dcseIT7g0zaBld0w= =bZLD -----END PGP SIGNATURE----- Mon Sep 15 03:59:49 UTC 2025 I: Checking whether the package is not for us Mon Sep 15 03:59:49 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Mon Sep 15 03:59:49 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Mon Sep 15 04:37:39 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 17 22:23:03 -12 2026 I: pbuilder-time-stamp: 1792318983 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pymol_3.1.0+dfsg-1.dsc] I: copying [./pymol_3.1.0+dfsg.orig.tar.xz] I: copying [./pymol_3.1.0+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pymol_3.1.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting pymol in pymol-3.1.0+dfsg dpkg-source: info: unpacking pymol_3.1.0+dfsg.orig.tar.xz dpkg-source: info: unpacking pymol_3.1.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 03_povray.patch dpkg-source: info: applying 22_fix_pymol_import.patch dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch dpkg-source: info: applying 28_no_data_install_in_python_path.patch dpkg-source: info: applying 31_fix_format-security.patch dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch dpkg-source: info: applying 40_mstop_movies.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1496030/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='de63da07e50e4808becf8315828e3765' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1496030' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fdMrjlQA/pbuilderrc_1iyB --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fdMrjlQA/b1 --logfile b1/build.log pymol_3.1.0+dfsg-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1496030/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), dh-sequence-python3, freeglut3-dev, libfreetype-dev, libglew-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, python3-setuptools, texlive-latex-base, libxml2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on freeglut3-dev; however: Package freeglut3-dev is not installed. pbuilder-satisfydepends-dummy depends on libfreetype-dev; however: Package libfreetype-dev is not installed. pbuilder-satisfydepends-dummy depends on libglew-dev; however: Package libglew-dev is not installed. pbuilder-satisfydepends-dummy depends on libglm-dev; however: Package libglm-dev is not installed. pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however: Package libnetcdf-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-opengl; however: Package python3-opengl is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5; however: Package python3-pyqt5 is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5.qtopengl; however: Package python3-pyqt5.qtopengl is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} freeglut3-dev{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libcom-err2{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1t64{a} libevdev2{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype-dev{a} libfreetype6{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libgles2{a} libglew-dev{a} libglew2.2{a} libglib2.0-0t64{a} libglm-dev{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglut-dev{a} libglut3.12{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libice-dev{a} libice6{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libinput-bin{a} libinput10{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-sphinxdoc{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack3{a} libldap-dev{a} libldap2{a} libllvm19{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmpfi0{a} libmtdev1t64{a} libnetcdf-dev{a} libnetcdf22{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libopengl-dev{a} libopengl0{a} libp11-kit-dev{a} libp11-kit0{a} libpaper-utils{a} libpaper2{a} libpcre2-16-0{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libptexenc1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5designer5{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5opengl5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsm-dev{a} libsm6{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsynctex2{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxi6{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2-16{a} libxml2-dev{a} libxmu6{a} libxpm4{a} libxrender1{a} libxshmfence1{a} libxt-dev{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} libzzip-0-13t64{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-opengl{a} python3-pkg-resources{a} python3-pyqt5{a} python3-pyqt5.qtopengl{a} python3-pyqt5.sip{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} tzdata{a} ucf{a} uuid-dev{a} x11-common{a} x11proto-dev{a} xdg-utils{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl dbus dvisvgm krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules libtasn1-doc libx11-protocol-perl linux-sysctl-defaults lmodern lynx mesa-vulkan-drivers psmisc publicsuffix qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 303 newly installed, 0 to remove and 0 not upgraded. Need to get 192 MB of archives. After unpacking 799 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1.2 [138 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-3 [390 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 python3-numpy arm64 1:2.2.4+ds-1.2 [3620 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-2 [93.9 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get: 33 http://deb.debian.org/debian forky/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 34 http://deb.debian.org/debian forky/main arm64 ucf all 3.0052 [43.3 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 cmake-data all 4.1.1+really3.31.6-1 [2268 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 48 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.9-3 [1375 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.15.0-1 [360 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 cmake arm64 4.1.1+really3.31.6-1 [9905 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 75 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 fontconfig arm64 2.15.0-2.4 [463 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 fonts-lmodern all 2.005-1 [4540 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libglvnd0 arm64 1.7.0-1+b2 [41.6 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 libdrm-common all 2.4.125-2 [8576 B] Get: 97 http://deb.debian.org/debian forky/main arm64 libdrm2 arm64 2.4.125-2 [38.4 kB] Get: 98 http://deb.debian.org/debian forky/main arm64 libx11-xcb1 arm64 2:1.8.12-1 [247 kB] Get: 99 http://deb.debian.org/debian forky/main arm64 libxcb-dri3-0 arm64 1.17.0-2+b1 [107 kB] Get: 100 http://deb.debian.org/debian forky/main arm64 libxcb-glx0 arm64 1.17.0-2+b1 [123 kB] Get: 101 http://deb.debian.org/debian forky/main arm64 libxcb-present0 arm64 1.17.0-2+b1 [106 kB] Get: 102 http://deb.debian.org/debian forky/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 103 http://deb.debian.org/debian forky/main arm64 libxcb-xfixes0 arm64 1.17.0-2+b1 [110 kB] Get: 104 http://deb.debian.org/debian forky/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 105 http://deb.debian.org/debian forky/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b4 [19.2 kB] Get: 106 http://deb.debian.org/debian forky/main arm64 libdrm-amdgpu1 arm64 2.4.125-2 [22.3 kB] Get: 107 http://deb.debian.org/debian forky/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Get: 108 http://deb.debian.org/debian forky/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 109 http://deb.debian.org/debian forky/main arm64 libllvm19 arm64 1:19.1.7-3+b2 [23.3 MB] Get: 110 http://deb.debian.org/debian forky/main arm64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get: 111 http://deb.debian.org/debian forky/main arm64 libsensors5 arm64 1:3.6.2-2 [36.4 kB] Get: 112 http://deb.debian.org/debian forky/main arm64 libxcb-randr0 arm64 1.17.0-2+b1 [117 kB] Get: 113 http://deb.debian.org/debian forky/main arm64 libxcb-sync1 arm64 1.17.0-2+b1 [109 kB] Get: 114 http://deb.debian.org/debian forky/main arm64 libxshmfence1 arm64 1.3.3-1 [11.1 kB] Get: 115 http://deb.debian.org/debian forky/main arm64 mesa-libgallium arm64 25.2.2-1 [10.4 MB] Get: 116 http://deb.debian.org/debian forky/main arm64 libgbm1 arm64 25.2.2-1 [45.2 kB] Get: 117 http://deb.debian.org/debian forky/main arm64 libvulkan1 arm64 1.4.321.0-1 [130 kB] Get: 118 http://deb.debian.org/debian forky/main arm64 libgl1-mesa-dri arm64 25.2.2-1 [46.6 kB] Get: 119 http://deb.debian.org/debian forky/main arm64 libglx-mesa0 arm64 25.2.2-1 [109 kB] Get: 120 http://deb.debian.org/debian forky/main arm64 libglx0 arm64 1.7.0-1+b2 [31.1 kB] Get: 121 http://deb.debian.org/debian forky/main arm64 libgl1 arm64 1.7.0-1+b2 [90.9 kB] Get: 122 http://deb.debian.org/debian forky/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB] Get: 123 http://deb.debian.org/debian forky/main arm64 libglut3.12 arm64 3.4.0-4 [134 kB] Get: 124 http://deb.debian.org/debian forky/main arm64 libopengl0 arm64 1.7.0-1+b2 [32.1 kB] Get: 125 http://deb.debian.org/debian forky/main arm64 libglu1-mesa arm64 9.0.2-1.1+b3 [162 kB] Get: 126 http://deb.debian.org/debian forky/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 127 http://deb.debian.org/debian forky/main arm64 x11proto-dev all 2024.1-1 [603 kB] Get: 128 http://deb.debian.org/debian forky/main arm64 libxau-dev arm64 1:1.0.11-1 [23.9 kB] Get: 129 http://deb.debian.org/debian forky/main arm64 libxdmcp-dev arm64 1:1.1.5-1 [44.2 kB] Get: 130 http://deb.debian.org/debian forky/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 131 http://deb.debian.org/debian forky/main arm64 libxcb1-dev arm64 1.17.0-2+b1 [182 kB] Get: 132 http://deb.debian.org/debian forky/main arm64 libx11-dev arm64 2:1.8.12-1 [883 kB] Get: 133 http://deb.debian.org/debian forky/main arm64 libglx-dev arm64 1.7.0-1+b2 [15.8 kB] Get: 134 http://deb.debian.org/debian forky/main arm64 libgl-dev arm64 1.7.0-1+b2 [101 kB] Get: 135 http://deb.debian.org/debian forky/main arm64 libopengl-dev arm64 1.7.0-1+b2 [5376 B] Get: 136 http://deb.debian.org/debian forky/main arm64 libglu1-mesa-dev arm64 9.0.2-1.1+b3 [203 kB] Get: 137 http://deb.debian.org/debian forky/main arm64 libxext-dev arm64 2:1.3.4-1+b3 [105 kB] Get: 138 http://deb.debian.org/debian forky/main arm64 x11-common all 1:7.7+25 [217 kB] Get: 139 http://deb.debian.org/debian forky/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 140 http://deb.debian.org/debian forky/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Get: 141 http://deb.debian.org/debian forky/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b2 [173 kB] Get: 142 http://deb.debian.org/debian forky/main arm64 libice-dev arm64 2:1.1.1-1 [73.0 kB] Get: 143 http://deb.debian.org/debian forky/main arm64 uuid-dev arm64 2.41.1-2 [49.7 kB] Get: 144 http://deb.debian.org/debian forky/main arm64 libsm-dev arm64 2:1.2.6-1 [40.2 kB] Get: 145 http://deb.debian.org/debian forky/main arm64 libxt-dev arm64 1:1.2.1-1.2+b2 [404 kB] Get: 146 http://deb.debian.org/debian forky/main arm64 libglut-dev arm64 3.4.0-4 [161 kB] Get: 147 http://deb.debian.org/debian forky/main arm64 freeglut3-dev arm64 3.4.0-4 [53.4 kB] Get: 148 http://deb.debian.org/debian forky/main arm64 hdf5-helpers arm64 1.14.5+repack-3 [26.6 kB] Get: 149 http://deb.debian.org/debian forky/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 150 http://deb.debian.org/debian forky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 151 http://deb.debian.org/debian forky/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 152 http://deb.debian.org/debian forky/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 153 http://deb.debian.org/debian forky/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 154 http://deb.debian.org/debian forky/main arm64 libaec0 arm64 1.1.4-2 [22.6 kB] Get: 155 http://deb.debian.org/debian forky/main arm64 libsz2 arm64 1.1.4-2 [8072 B] Get: 156 http://deb.debian.org/debian forky/main arm64 libaec-dev arm64 1.1.4-2 [20.3 kB] Get: 157 http://deb.debian.org/debian forky/main arm64 libavahi-common-data arm64 0.8-17 [113 kB] Get: 158 http://deb.debian.org/debian forky/main arm64 libavahi-common3 arm64 0.8-17 [44.9 kB] Get: 159 http://deb.debian.org/debian forky/main arm64 libdbus-1-3 arm64 1.16.2-2 [169 kB] Get: 160 http://deb.debian.org/debian forky/main arm64 libavahi-client3 arm64 0.8-17 [48.5 kB] Get: 161 http://deb.debian.org/debian forky/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 162 http://deb.debian.org/debian forky/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 163 http://deb.debian.org/debian forky/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 164 http://deb.debian.org/debian forky/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 165 http://deb.debian.org/debian forky/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 166 http://deb.debian.org/debian forky/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 167 http://deb.debian.org/debian forky/main arm64 libcups2t64 arm64 2.4.10-3 [235 kB] Get: 168 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get: 169 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get: 170 http://deb.debian.org/debian forky/main arm64 libcurl3t64-gnutls arm64 8.15.0-1 [355 kB] Get: 171 http://deb.debian.org/debian forky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 172 http://deb.debian.org/debian forky/main arm64 libunbound8 arm64 1.23.1-1 [561 kB] Get: 173 http://deb.debian.org/debian forky/main arm64 libgnutls-dane0t64 arm64 3.8.9-3 [453 kB] Get: 174 http://deb.debian.org/debian forky/main arm64 libgnutls-openssl27t64 arm64 3.8.9-3 [453 kB] Get: 175 http://deb.debian.org/debian forky/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get: 176 http://deb.debian.org/debian forky/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 177 http://deb.debian.org/debian forky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 178 http://deb.debian.org/debian forky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get: 179 http://deb.debian.org/debian forky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get: 180 http://deb.debian.org/debian forky/main arm64 nettle-dev arm64 3.10.1-1 [1325 kB] Get: 181 http://deb.debian.org/debian forky/main arm64 libgnutls28-dev arm64 3.8.9-3 [1416 kB] Get: 182 http://deb.debian.org/debian forky/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 183 http://deb.debian.org/debian forky/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 184 http://deb.debian.org/debian forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 185 http://deb.debian.org/debian forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 186 http://deb.debian.org/debian forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 187 http://deb.debian.org/debian forky/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 188 http://deb.debian.org/debian forky/main arm64 libnghttp3-dev arm64 1.8.0-1 [89.4 kB] Get: 189 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.11.0-1 [33.9 kB] Get: 190 http://deb.debian.org/debian forky/main arm64 libngtcp2-dev arm64 1.11.0-1 [174 kB] Get: 191 http://deb.debian.org/debian forky/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 192 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 193 http://deb.debian.org/debian forky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Get: 194 http://deb.debian.org/debian forky/main arm64 libssl-dev arm64 3.5.2-1 [3386 kB] Get: 195 http://deb.debian.org/debian forky/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 196 http://deb.debian.org/debian forky/main arm64 libzstd-dev arm64 1.5.7+dfsg-1.1 [335 kB] Get: 197 http://deb.debian.org/debian forky/main arm64 libcurl4-gnutls-dev arm64 8.15.0-1 [490 kB] Get: 198 http://deb.debian.org/debian forky/main arm64 libdouble-conversion3 arm64 3.3.1-1 [37.3 kB] Get: 199 http://deb.debian.org/debian forky/main arm64 libwayland-client0 arm64 1.24.0-2+b1 [27.5 kB] Get: 200 http://deb.debian.org/debian forky/main arm64 libegl-mesa0 arm64 25.2.2-1 [114 kB] Get: 201 http://deb.debian.org/debian forky/main arm64 libevdev2 arm64 1.13.4+dfsg-1 [30.4 kB] Get: 202 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.1-2 [145 kB] Get: 203 http://deb.debian.org/debian forky/main arm64 libpng-dev arm64 1.6.50-1 [361 kB] Get: 204 http://deb.debian.org/debian forky/main arm64 libfreetype-dev arm64 2.13.3+dfsg-1 [600 kB] Get: 205 http://deb.debian.org/debian forky/main arm64 libgles2 arm64 1.7.0-1+b2 [18.0 kB] Get: 206 http://deb.debian.org/debian forky/main arm64 libglew2.2 arm64 2.2.0-4+b2 [162 kB] Get: 207 http://deb.debian.org/debian forky/main arm64 libglew-dev arm64 2.2.0-4+b2 [261 kB] Get: 208 http://deb.debian.org/debian forky/main arm64 libglib2.0-0t64 arm64 2.84.4-3 [1428 kB] Get: 209 http://deb.debian.org/debian forky/main arm64 libglm-dev all 0.9.9.8+ds-9 [183 kB] Get: 210 http://deb.debian.org/debian forky/main arm64 libgraphite2-3 arm64 1.3.14-3 [70.3 kB] Get: 211 http://deb.debian.org/debian forky/main arm64 libgudev-1.0-0 arm64 238-7 [13.9 kB] Get: 212 http://deb.debian.org/debian forky/main arm64 libharfbuzz0b arm64 11.4.5-1 [465 kB] Get: 213 http://deb.debian.org/debian forky/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Get: 214 http://deb.debian.org/debian forky/main arm64 libhdf5-cpp-310 arm64 1.14.5+repack-3 [121 kB] Get: 215 http://deb.debian.org/debian forky/main arm64 libhdf5-fortran-310 arm64 1.14.5+repack-3 [110 kB] Get: 216 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [66.1 kB] Get: 217 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-3 [42.1 kB] Get: 218 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-3 [24.4 kB] Get: 219 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 220 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Get: 221 http://deb.debian.org/debian forky/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Get: 222 http://deb.debian.org/debian forky/main arm64 libhdf5-dev arm64 1.14.5+repack-3 [3225 kB] Get: 223 http://deb.debian.org/debian forky/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 224 http://deb.debian.org/debian forky/main arm64 libwacom-common all 2.16.1-1 [112 kB] Get: 225 http://deb.debian.org/debian forky/main arm64 libwacom9 arm64 2.16.1-1 [25.6 kB] Get: 226 http://deb.debian.org/debian forky/main arm64 libinput-bin arm64 1.28.1-1 [26.4 kB] Get: 227 http://deb.debian.org/debian forky/main arm64 libmtdev1t64 arm64 1.1.7-1 [22.5 kB] Get: 228 http://deb.debian.org/debian forky/main arm64 libinput10 arm64 1.28.1-1 [129 kB] Get: 229 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 230 http://deb.debian.org/debian forky/main arm64 libkpathsea6 arm64 2025.20250727.75242+ds-4 [149 kB] Get: 231 http://deb.debian.org/debian forky/main arm64 liblzma-dev arm64 5.8.1-1.1 [344 kB] Get: 232 http://deb.debian.org/debian forky/main arm64 libmd4c0 arm64 0.5.2-2+b1 [46.1 kB] Get: 233 http://deb.debian.org/debian forky/main arm64 libmpfi0 arm64 1.5.4+ds-4 [34.5 kB] Get: 234 http://deb.debian.org/debian forky/main arm64 libnetcdf22 arm64 1:4.9.3-1+b1 [480 kB] Get: 235 http://deb.debian.org/debian forky/main arm64 libxml2-dev arm64 2.14.5+dfsg-0.2 [709 kB] Get: 236 http://deb.debian.org/debian forky/main arm64 libnetcdf-dev arm64 1:4.9.3-1+b1 [116 kB] Get: 237 http://deb.debian.org/debian forky/main arm64 libpaper2 arm64 2.2.5-0.3+b2 [16.6 kB] Get: 238 http://deb.debian.org/debian forky/main arm64 libpaper-utils arm64 2.2.5-0.3+b2 [16.4 kB] Get: 239 http://deb.debian.org/debian forky/main arm64 libpcre2-16-0 arm64 10.46-1 [247 kB] Get: 240 http://deb.debian.org/debian forky/main arm64 libpotrace0 arm64 1.16-2+b2 [23.4 kB] Get: 241 http://deb.debian.org/debian forky/main arm64 libptexenc1 arm64 2025.20250727.75242+ds-4 [49.5 kB] Get: 242 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.7-1 [1978 kB] Get: 243 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.7-1 [4924 kB] Get: 244 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.5-1 [10.4 kB] Get: 245 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.5-1 [1068 B] Get: 246 http://deb.debian.org/debian forky/main arm64 shared-mime-info arm64 2.4-5+b3 [755 kB] Get: 247 http://deb.debian.org/debian forky/main arm64 libqt5core5t64 arm64 5.15.17+dfsg-2+b1 [1890 kB] Get: 248 http://deb.debian.org/debian forky/main arm64 libqt5dbus5t64 arm64 5.15.17+dfsg-2+b1 [216 kB] Get: 249 http://deb.debian.org/debian forky/main arm64 libegl1 arm64 1.7.0-1+b2 [34.0 kB] Get: 250 http://deb.debian.org/debian forky/main arm64 libqt5network5t64 arm64 5.15.17+dfsg-2+b1 [695 kB] Get: 251 http://deb.debian.org/debian forky/main arm64 libxcb-icccm4 arm64 0.4.2-1 [27.2 kB] Get: 252 http://deb.debian.org/debian forky/main arm64 libxcb-util1 arm64 0.4.1-1 [23.6 kB] Get: 253 http://deb.debian.org/debian forky/main arm64 libxcb-image0 arm64 0.4.0-2+b2 [21.9 kB] Get: 254 http://deb.debian.org/debian forky/main arm64 libxcb-keysyms1 arm64 0.4.1-1 [16.8 kB] Get: 255 http://deb.debian.org/debian forky/main arm64 libxcb-render-util0 arm64 0.3.10-1 [18.5 kB] Get: 256 http://deb.debian.org/debian forky/main arm64 libxcb-shape0 arm64 1.17.0-2+b1 [106 kB] Get: 257 http://deb.debian.org/debian forky/main arm64 libxcb-xinerama0 arm64 1.17.0-2+b1 [105 kB] Get: 258 http://deb.debian.org/debian forky/main arm64 libxcb-xinput0 arm64 1.17.0-2+b1 [130 kB] Get: 259 http://deb.debian.org/debian forky/main arm64 libxcb-xkb1 arm64 1.17.0-2+b1 [129 kB] Get: 260 http://deb.debian.org/debian forky/main arm64 xkb-data all 2.42-1 [790 kB] Get: 261 http://deb.debian.org/debian forky/main arm64 libxkbcommon0 arm64 1.7.0-2.1 [106 kB] Get: 262 http://deb.debian.org/debian forky/main arm64 libxkbcommon-x11-0 arm64 1.7.0-2.1 [15.3 kB] Get: 263 http://deb.debian.org/debian forky/main arm64 libqt5gui5t64 arm64 5.15.17+dfsg-2+b1 [3421 kB] Get: 264 http://deb.debian.org/debian forky/main arm64 libqt5widgets5t64 arm64 5.15.17+dfsg-2+b1 [2388 kB] Get: 265 http://deb.debian.org/debian forky/main arm64 libqt5xml5t64 arm64 5.15.17+dfsg-2+b1 [127 kB] Get: 266 http://deb.debian.org/debian forky/main arm64 libqt5designer5 arm64 5.15.17-3 [2720 kB] Get: 267 http://deb.debian.org/debian forky/main arm64 libqt5sql5t64 arm64 5.15.17+dfsg-2+b1 [128 kB] Get: 268 http://deb.debian.org/debian forky/main arm64 libqt5help5 arm64 5.15.17-3 [145 kB] Get: 269 http://deb.debian.org/debian forky/main arm64 libqt5opengl5t64 arm64 5.15.17+dfsg-2+b1 [152 kB] Get: 270 http://deb.debian.org/debian forky/main arm64 libqt5printsupport5t64 arm64 5.15.17+dfsg-2+b1 [207 kB] Get: 271 http://deb.debian.org/debian forky/main arm64 libqt5test5t64 arm64 5.15.17+dfsg-2+b1 [145 kB] Get: 272 http://deb.debian.org/debian forky/main arm64 libsynctex2 arm64 2025.20250727.75242+ds-4 [54.5 kB] Get: 273 http://deb.debian.org/debian forky/main arm64 libteckit0 arm64 2.5.12+ds1-1+b1 [303 kB] Get: 274 http://deb.debian.org/debian forky/main arm64 libtexlua53-5 arm64 2025.20250727.75242+ds-4 [90.8 kB] Get: 275 http://deb.debian.org/debian forky/main arm64 libxmu6 arm64 2:1.1.3-3+b4 [55.7 kB] Get: 276 http://deb.debian.org/debian forky/main arm64 libxpm4 arm64 1:3.5.17-1+b3 [53.4 kB] Get: 277 http://deb.debian.org/debian forky/main arm64 libxaw7 arm64 2:1.0.16-1 [195 kB] Get: 278 http://deb.debian.org/debian forky/main arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [59.4 kB] Get: 279 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.5-1 [1044 B] Get: 280 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.7-1 [504 kB] Get: 281 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.5-1 [26.1 kB] Get: 282 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.5-1 [1068 B] Get: 283 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 284 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 285 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 286 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 287 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 288 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 289 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 290 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 291 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 292 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 293 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 294 http://deb.debian.org/debian forky/main arm64 python3-opengl all 3.1.10+dfsg-1 [624 kB] Get: 295 http://deb.debian.org/debian forky/main arm64 python3-pyqt5.sip arm64 12.17.0-1+b1 [59.9 kB] Get: 296 http://deb.debian.org/debian forky/main arm64 python3-pyqt5 arm64 5.15.11+dfsg-2+b2 [2320 kB] Get: 297 http://deb.debian.org/debian forky/main arm64 python3-pyqt5.qtopengl arm64 5.15.11+dfsg-2+b2 [199 kB] Get: 298 http://deb.debian.org/debian forky/main arm64 t1utils arm64 1.41-4+b1 [57.6 kB] Get: 299 http://deb.debian.org/debian forky/main arm64 tex-common all 6.19 [29.4 kB] Get: 300 http://deb.debian.org/debian forky/main arm64 texlive-binaries arm64 2025.20250727.75242+ds-4 [6818 kB] Get: 301 http://deb.debian.org/debian forky/main arm64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 302 http://deb.debian.org/debian forky/main arm64 texlive-base all 2025.20250727-3 [23.1 MB] Get: 303 http://deb.debian.org/debian forky/main arm64 texlive-latex-base all 2025.20250727-3 [1318 kB] Fetched 192 MB in 2s (100 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.7-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... 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Setting up libgnutls-openssl27t64:arm64 (3.8.9-3) ... Setting up libnghttp2-dev:arm64 (1.64.0-1.1+b1) ... Setting up mesa-libgallium:arm64 (25.2.2-1) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up libxcb1-dev:arm64 (1.17.0-2+b1) ... Setting up libxi6:arm64 (2:1.8.2-1) ... Setting up libgbm1:arm64 (25.2.2-1) ... Setting up python3.13 (3.13.7-1) ... Setting up libwacom9:arm64 (2.16.1-1) ... Setting up libsm-dev:arm64 (2:1.2.6-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libgl1-mesa-dri:arm64 (25.2.2-1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libx11-dev:arm64 (2:1.8.12-1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.18.4-1+b1) ... Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libinput-bin (1.28.1-1) ... Setting up libfreetype-dev:arm64 (2.13.3+dfsg-1) ... Setting up tex-common (6.19) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libqt5core5t64:arm64 (5.15.17+dfsg-2+b1) ... Setting up libegl-mesa0:arm64 (25.2.2-1) ... Setting up libgnutls-dane0t64:arm64 (3.8.9-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:arm64 (1.21.3-5) ... Setting up libpython3.13-dev:arm64 (3.13.7-1) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2+b2) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up libxext-dev:arm64 (2:1.3.4-1+b3) ... Setting up python3-pyqt5.sip (12.17.0-1+b1) ... Setting up libegl1:arm64 (1.7.0-1+b2) ... Setting up libqt5sql5t64:arm64 (5.15.17+dfsg-2+b1) ... Setting up libcups2t64:arm64 (2.4.10-3) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.11.0-1) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-5) ... Setting up dh-python (6.20250414) ... Setting up libgnutls28-dev:arm64 (3.8.9-3) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up libinput10:arm64 (1.28.1-1) ... Setting up libxmu6:arm64 (2:1.1.3-3+b4) ... Setting up libqt5dbus5t64:arm64 (5.15.17+dfsg-2+b1) ... Setting up libglx-mesa0:arm64 (25.2.2-1) ... Setting up libpython3-dev:arm64 (3.13.5-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libglx0:arm64 (1.7.0-1+b2) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:arm64 (8.15.0-1) ... Setting up libkdb5-10t64:arm64 (1.21.3-5) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up libqt5network5t64:arm64 (5.15.17+dfsg-2+b1) ... Setting up libcurl3t64-gnutls:arm64 (8.15.0-1) ... Setting up libqt5xml5t64:arm64 (5.15.17+dfsg-2+b1) ... Setting up python3-all (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.11.0-1) ... Setting up libxaw7:arm64 (2:1.0.16-1) ... Setting up libqt5test5t64:arm64 (5.15.17+dfsg-2+b1) ... Setting up python3-inflect (7.5.0-1) ... Setting up libgl1:arm64 (1.7.0-1+b2) ... Setting up libxt-dev:arm64 (1:1.2.1-1.2+b2) ... Setting up libpython3-all-dev:arm64 (3.13.5-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up libglut3.12:arm64 (3.4.0-4) ... Setting up python3-dev (3.13.5-1) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libglew2.2:arm64 (2.2.0-4+b2) ... Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... Setting up texlive-binaries (2025.20250727.75242+ds-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libkadm5srv-mit12:arm64 (1.21.3-5) ... Setting up cmake (4.1.1+really3.31.6-1) ... Setting up libglx-dev:arm64 (1.7.0-1+b2) ... Setting up libhdf5-fortran-310:arm64 (1.14.5+repack-3) ... Setting up texlive-base (2025.20250727-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libgl-dev:arm64 (1.7.0-1+b2) ... Setting up krb5-multidev:arm64 (1.21.3-5) ... Setting up libhdf5-cpp-310:arm64 (1.14.5+repack-3) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.5-1) ... Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up libnetcdf22:arm64 (1:4.9.3-1+b1) ... Setting up python3-opengl (3.1.10+dfsg-1) ... Setting up libkrb5-dev:arm64 (1.21.3-5) ... Setting up libqt5gui5t64:arm64 (5.15.17+dfsg-2+b1) ... Setting up texlive-latex-base (2025.20250727-3) ... Setting up libglu1-mesa-dev:arm64 (9.0.2-1.1+b3) ... Setting up libglut-dev:arm64 (3.4.0-4) ... Setting up libhdf5-hl-cpp-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-hl-fortran-310:arm64 (1.14.5+repack-3) ... Setting up libqt5widgets5t64:arm64 (5.15.17+dfsg-2+b1) ... Setting up libcurl4-gnutls-dev:arm64 (8.15.0-1) ... Setting up libqt5help5:arm64 (5.15.17-3) ... Setting up freeglut3-dev:arm64 (3.4.0-4) ... Setting up libglew-dev:arm64 (2.2.0-4+b2) ... Setting up libhdf5-dev (1.14.5+repack-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnetcdf-dev (1:4.9.3-1+b1) ... Setting up libqt5opengl5t64:arm64 (5.15.17+dfsg-2+b1) ... Setting up libqt5printsupport5t64:arm64 (5.15.17+dfsg-2+b1) ... Setting up libqt5designer5:arm64 (5.15.17-3) ... Setting up python3-pyqt5 (5.15.11+dfsg-2+b2) ... Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2+b2) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for tex-common (6.19) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pymol-3.1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pymol_3.1.0+dfsg-1_source.changes dpkg-buildpackage: info: source package pymol dpkg-buildpackage: info: source version 3.1.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael Banck dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) running clean removing '/build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/pymol-3.1.0+dfsg' rm -f -r build test/tmp test/cmp generated dh_clean debian/pymol-ref-card.* \ Rules.make create_shadertext.pyc make[1]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg' debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) running build running build_py creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol2 copying modules/pymol2/cmd2.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol2 copying modules/pymol2/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol2 creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/povray.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/xwin.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/xray.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/wizarding.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/viewing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/vfont.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/util.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/shortcut_manager.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/shortcut_dict.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/shortcut.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/setting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/seqalign.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/selector.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/selecting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/save_shortcut.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/rpc.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/querying.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/pymolhttpd.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/preset.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/parsing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/parser.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/mpeg_encode.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/moving.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/movie.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/morphing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/monitoring.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/menu.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/locking.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/lazyio.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/keywords.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/keyboard.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/invocation.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/internal.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/importing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/helping.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/headering.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/gui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/fitting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/feedingback.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/externing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/exporting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/experimenting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/editor.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/editing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/diagnosing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/creating.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/controlling.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/constants_palette.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/constants.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/computing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/completing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/commanding.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/colorramping.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/colorprinting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/cmd.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/checking.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/cgobuilder.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/cgo.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/callback.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/api.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/_gui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol copying modules/pymol/__main__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk copying modules/pmg_tk/volume.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk copying modules/pmg_tk/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk copying modules/pmg_tk/TextEditor.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk copying modules/pmg_tk/Setting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk copying modules/pmg_tk/SetEditor.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk copying modules/pmg_tk/PMGApp.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk copying modules/pmg_tk/Demo.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk copying modules/pmg_tk/ColorEditor.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/volume.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/shortcut_menu_gui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/scene_bin_gui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/properties_dialog.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/mimic_tk.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/keymapping.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/file_dialogs.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/builder.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt copying modules/pmg_qt/TextEditor.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/xyz.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/water_residues.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/water_amber.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/solvate.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/sdf.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/protein_residues.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/protein_mmff.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/protein_amber99.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/protein_amber.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/protein.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/place.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/pkl.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/pdb.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/neighbor.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/mol2.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/mol.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/models.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/mmd.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/mass.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/map.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/mae.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/lst.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/io.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/hetatm.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/gms.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/gamess1.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/dictdb.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/cpv.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/cif.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/charge.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/cc1.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/brick.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/bonds.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/bond_mmff.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/bond_amber.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/arc.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy copying modules/chempy/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/web/examples copying modules/web/examples/justhttpd.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/web/examples copying modules/web/examples/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/web/examples creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/toggle.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/security.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/sculpting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/renaming.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/openvr.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/message.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/measurement.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/label.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/filter.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/dragging.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/distance.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/density.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/demo.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/command.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/cleanup.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/charge.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/box.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/benchmark.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/appearance.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/annotation.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard copying modules/pymol/wizard/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/stereochemistry creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/plugins copying modules/pymol/plugins/repository.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/plugins copying modules/pymol/plugins/installation.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/plugins copying modules/pymol/plugins/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/plugins creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/Qt copying modules/pymol/Qt/utils.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/Qt copying modules/pymol/Qt/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/Qt creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/startup creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/skins creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/skins/normal creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/skins/demo creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/syntax creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/tinker copying modules/chempy/tinker/state.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/tinker copying modules/chempy/tinker/realtime.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/tinker copying modules/chempy/tinker/keyword.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/tinker copying modules/chempy/tinker/amber.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/tinker copying modules/chempy/tinker/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/tinker creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/mmtf copying modules/chempy/mmtf/io.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/mmtf creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/fragments copying modules/chempy/fragments/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/fragments creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/fast copying modules/chempy/fast/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/fast creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/champ copying modules/chempy/champ/formal_charges.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/champ copying modules/chempy/champ/assign.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/champ copying modules/chempy/champ/amber99.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/champ copying modules/chempy/champ/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/champ creating /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bmin copying modules/chempy/bmin/util.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bmin copying modules/chempy/bmin/state.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bmin copying modules/chempy/bmin/realtime.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bmin copying modules/chempy/bmin/commands.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bmin copying modules/chempy/bmin/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bmin running egg_info creating modules/pymol.egg-info writing modules/pymol.egg-info/PKG-INFO /usr/lib/python3/dist-packages/setuptools/_core_metadata.py:163: SetuptoolsDeprecationWarning: Invalid config. !! ******************************************************************************** newlines are not allowed in `summary` and will break in the future ******************************************************************************** !! write_field('Summary', single_line(summary)) writing dependency_links to modules/pymol.egg-info/dependency_links.txt writing entry points to modules/pymol.egg-info/entry_points.txt writing requirements to modules/pymol.egg-info/requires.txt writing top-level names to modules/pymol.egg-info/top_level.txt writing manifest file 'modules/pymol.egg-info/SOURCES.txt' reading manifest file 'modules/pymol.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'modules/pymol.egg-info/SOURCES.txt' copying modules/pmg_qt/forms/shortcut_menu.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_object.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/render.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginitem.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_map.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_aln.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/help_shortcut.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/create_shortcut.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/change_confirm.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/askpartial.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms running build_ext cmake /build/reproducible-path/pymol-3.1.0+dfsg -DTARGET_NAME=_cmd -DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol -DCMAKE_BUILD_TYPE=Release -DALL_INC_DIR=include;contrib/uiuc/plugins/include;ov/src;layer0;layer1;layer2;layer3;layer4;layer5;build/generated;contrib/uiuc/plugins/molfile_plugin/src;/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include;/usr/include;/usr/include/freetype2;/usr/include/libxml2;/usr/include/python3.13;/usr/include/python3.13; -DALL_SRC=build/generated/ShaderText.cpp;contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c;contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c;contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c;contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c;contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/carplugin.c;contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/corplugin.c;contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c;contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c;contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c;contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c;contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/hash.c;contrib/uiuc/plugins/molfile_plugin/src/inthash.c;contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c;contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c;contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c;contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c;contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c;contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c;contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c;contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c;contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c;contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c;layer0/Bezier.cpp;layer0/Block.cpp;layer0/CarveHelper.cpp;layer0/ContourSurf.cpp;layer0/Crystal.cpp;layer0/Err.cpp;layer0/Feedback.cpp;layer0/Field.cpp;layer0/File.cpp;layer0/GFXManager.cpp;layer0/GenericBuffer.cpp;layer0/GraphicsUtil.cpp;layer0/Isosurf.cpp;layer0/Map.cpp;layer0/Match.cpp;layer0/Matrix.cpp;layer0/MemoryDebug.cpp;layer0/MemoryUsage.cpp;layer0/MyPNG.cpp;layer0/Parse.cpp;layer0/Pixmap.cpp;layer0/PostProcess.cpp;layer0/PrintUtils.cpp;layer0/ShaderMgr.cpp;layer0/ShaderPreprocessor.cpp;layer0/ShaderPrg.cpp;layer0/Sphere.cpp;layer0/TTT.cpp;layer0/Tetsurf.cpp;layer0/Texture.cpp;layer0/Tracker.cpp;layer0/Triangle.cpp;layer0/Util.cpp;layer0/Util2.cpp;layer0/Vector.cpp;layer0/Word.cpp;layer0/ccealignmodule.cpp;layer0/marching_cubes.cpp;layer0/os_gl.cpp;layer1/Basis.cpp;layer1/ButMode.cpp;layer1/CGO.cpp;layer1/CGOGL.cpp;layer1/CGORenderer.cpp;layer1/COLLADA.cpp;layer1/Camera.cpp;layer1/Character.cpp;layer1/Color.cpp;layer1/Control.cpp;layer1/Extrude.cpp;layer1/Font.cpp;layer1/FontGLUT.cpp;layer1/FontGLUT8x13.cpp;layer1/FontGLUT9x15.cpp;layer1/FontGLUTHel10.cpp;layer1/FontGLUTHel12.cpp;layer1/FontGLUTHel18.cpp;layer1/FontType.cpp;layer1/ImageUtils.cpp;layer1/Movie.cpp;layer1/Ortho.cpp;layer1/P.cpp;layer1/PConv.cpp;layer1/Picking.cpp;layer1/Pop.cpp;layer1/PyMOLObject.cpp;layer1/Ray.cpp;layer1/Rep.cpp;layer1/Scene.cpp;layer1/SceneMouse.cpp;layer1/ScenePicking.cpp;layer1/SceneRay.cpp;layer1/SceneRender.cpp;layer1/SceneView.cpp;layer1/ScrollBar.cpp;layer1/Seq.cpp;layer1/Setting.cpp;layer1/Shaker.cpp;layer1/SymOp.cpp;layer1/SymOpPConv.cpp;layer1/SymOpTools.cpp;layer1/Symmetry.cpp;layer1/Text.cpp;layer1/TypeFace.cpp;layer1/View.cpp;layer1/Wizard.cpp;layer2/AssemblyHelpers.cpp;layer2/AtomInfo.cpp;layer2/AtomInfoHistory.cpp;layer2/BondTypeHistory.cpp;layer2/CifFile.cpp;layer2/CifMoleculeReader.cpp;layer2/CoordSet.cpp;layer2/DistSet.cpp;layer2/GadgetSet.cpp;layer2/HydrogenAdder.cpp;layer2/MmodTyping.cpp;layer2/MmtfMoleculeReader.cpp;layer2/Mol2Typing.cpp;layer2/MolV3000.cpp;layer2/ObjectAlignment.cpp;layer2/ObjectCGO.cpp;layer2/ObjectCallback.cpp;layer2/ObjectCurve.cpp;layer2/ObjectDist.cpp;layer2/ObjectGadget.cpp;layer2/ObjectGadgetRamp.cpp;layer2/ObjectGroup.cpp;layer2/ObjectMap.cpp;layer2/ObjectMesh.cpp;layer2/ObjectMolecule.cpp;layer2/ObjectMolecule2.cpp;layer2/ObjectMolecule3.cpp;layer2/ObjectSlice.cpp;layer2/ObjectSurface.cpp;layer2/ObjectVolume.cpp;layer2/RepAngle.cpp;layer2/RepCartoon.cpp;layer2/RepCylBond.cpp;layer2/RepDihedral.cpp;layer2/RepDistDash.cpp;layer2/RepDistLabel.cpp;layer2/RepDot.cpp;layer2/RepEllipsoid.cpp;layer2/RepLabel.cpp;layer2/RepMesh.cpp;layer2/RepNonbonded.cpp;layer2/RepNonbondedSphere.cpp;layer2/RepRibbon.cpp;layer2/RepSphere.cpp;layer2/RepSphereGenerate.cpp;layer2/RepSphereImmediate.cpp;layer2/RepSurface.cpp;layer2/RepWireBond.cpp;layer2/Sculpt.cpp;layer2/SculptCache.cpp;layer2/SideChainHelper.cpp;layer2/VFont.cpp;layer3/AtomIterators.cpp;layer3/CifDataValueFormatter.cpp;layer3/Editor.cpp;layer3/Executive.cpp;layer3/ExecutivePython.cpp;layer3/Interactions.cpp;layer3/MaeExportHelpers.cpp;layer3/MoleculeExporter.cpp;layer3/MovieScene.cpp;layer3/PlugIOManager.cpp;layer3/RingFinder.cpp;layer3/Seeker.cpp;layer3/Selector.cpp;layer3/SelectorTmp.cpp;layer3/SpecRec.cpp;layer3/SpecRecSpecial.cpp;layer4/Cmd.cpp;layer4/Menu.cpp;layer4/PopUp.cpp;layer5/PyMOL.cpp;layer5/TestPyMOL.cpp;layer5/main.cpp;ov/src/OVContext.cpp;ov/src/OVHeap.cpp;ov/src/OVHeapArray.cpp;ov/src/OVLexicon.cpp;ov/src/OVOneToAny.cpp;ov/src/OVOneToOne.cpp;ov/src/OVRandom.cpp;ov/src/ov_utility.cpp; -DALL_DEF=_PYMOL_LIBPNG;_PYMOL_FREETYPE;PYMOL_OPENMP;_PYMOL_VMD_PLUGINS;_HAVE_LIBXML;_PYMOL_NO_MSGPACKC;_PYMOL_NO_MAIN;_PYMOL_NUMPY; -DALL_LIB_DIR=/usr/lib; -DALL_LIB=png;freetype;xml2;GL;GLEW;netcdf; -DALL_COMP_ARGS=-Werror=return-type;-Wunused-variable;-Wno-switch;-Wno-narrowing;-Wno-char-subscripts;-O3;-fopenmp; -DALL_EXT_LINK=-fopenmp -DSHARED_SUFFIX=.cpython-313-aarch64-linux-gnu.so -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (2.4s) -- Generating done (0.1s) -- Build files have been written to: /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd cmake --build . --config Release -j12 gmake[1]: Entering directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd' /usr/bin/cmake -S/build/reproducible-path/pymol-3.1.0+dfsg -B/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd/CMakeFiles /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[2]: Entering directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd' /usr/bin/gmake -f CMakeFiles/_cmd.dir/build.make CMakeFiles/_cmd.dir/depend gmake[3]: Entering directory 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-I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC 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-I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp [ 2%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c.o [ 3%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp.o /usr/bin/cc 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-I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 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-Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp [ 10%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src 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CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/inthash.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/inthash.c [ 12%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c.o /usr/bin/cc -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c [ 12%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp.o 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-I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp [ 15%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c.o /usr/bin/cc -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c [ 16%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c.o /usr/bin/cc -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c [ 16%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp [ 16%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp [ 17%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp [ 17%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int {anonymous}::write_structure(void*, int, const molfile_atom_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable 'last_ctnumber' [-Wunused-variable] 1904 | int last_ctnumber = -1; | ^~~~~~~~~~~~~ [ 18%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c.o /usr/bin/cc -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c [ 18%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int getUniqueResID(char*, int)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable 'i' [-Wunused-variable] 443 | int i, uid; | ^ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable 'j' [-Wunused-variable] 484 | int i, count, atomdata, pos, idx, xyzcount, j; | ^ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable 'oldChain' [-Wunused-variable] 503 | char oldChain[8]; | ^~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readAngleBonds(molfile_atom_t*, pdbxParser*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable 'bondTable' [-Wunused-variable] 803 | int bondTable[32]; | ^~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable 'j' [-Wunused-variable] 807 | int i, pos, j, k; | ^ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable 'modelNum' [-Wunused-variable] 811 | char modelNum[8]; | ^~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable 'atom' [-Wunused-variable] 822 | molfile_atom_t * atom; | ^~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable 'test' [-Wunused-variable] 884 | int test = parser->nbonds + bnum; | ^~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'bool readRMSDBonds(molfile_atom_t*, pdbxParser*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable 'bondTable' [-Wunused-variable] 984 | int bondTable[32]; | ^~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable 'j' [-Wunused-variable] 988 | int i, pos, j, k; | ^ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable 'modelNum' [-Wunused-variable] 991 | char modelNum[8]; | ^~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable 'atom' [-Wunused-variable] 1002 | molfile_atom_t * atom; | ^~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function 'void* open_file_write(const char*, const char*, int)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable 'fd' [-Wunused-variable] 1409 | FILE* fd; | ^~ [ 18%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp [ 19%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp [ 19%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp [ 20%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c.o /usr/bin/cc -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c In file included from /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void put_element_ply(PlyFile*, void*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable 'i' [-Wunused-variable] 459 | int i,j,k; | ^ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void ascii_get_element(PlyFile*, char*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable 'i' [-Wunused-variable] 1407 | int i,j,k; | ^ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable 'i' [-Wunused-variable] 1541 | int i,j,k; | ^ [ 20%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c.o /usr/bin/cc -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c [ 21%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp [ 21%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c.o /usr/bin/cc -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'char* recreate_command_line(int, char**)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1334 | line[0] = '\0'; | ~~~~~~~~^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by 'malloc' 1333 | line = (char *) malloc (sizeof(char) * len); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 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CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c [ 23%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 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CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c.o /usr/bin/cc -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c [ 26%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c.o /usr/bin/cc -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c [ 27%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c.o /usr/bin/cc -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 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CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c [ 27%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp [ 28%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp.o [ 28%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::string framefile(const std::string&, size_t, size_t, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] 675 | sprintf(answer, "%03x/", d1); | ^ In function 'std::string DDreldir(const std::string&, int, int)', inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:20: note: 'sprintf' output between 5 and 10 bytes into a destination of size 9 675 | sprintf(answer, "%03x/", d1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::string framefile(const std::string&, size_t, size_t, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~ In function 'std::string DDreldir(const std::string&, int, int)', inlined from 'std::string framefile(const std::string&, size_t, size_t, int, int)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646] 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:20: note: 'sprintf' output between 9 and 19 bytes into a destination of size 9 673 | sprintf(answer, "%03x/%03x/", d1, d2); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c.o /usr/bin/cc -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c [ 29%] Building CXX object CMakeFiles/_cmd.dir/layer0/Bezier.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Bezier.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Bezier.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Bezier.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Bezier.cpp [ 29%] Building CXX object CMakeFiles/_cmd.dir/layer0/Block.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Block.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Block.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Block.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Block.cpp [ 29%] Building CXX object CMakeFiles/_cmd.dir/layer0/CarveHelper.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/CarveHelper.cpp.o -MF CMakeFiles/_cmd.dir/layer0/CarveHelper.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/CarveHelper.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/CarveHelper.cpp /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const std::string&, mode_t, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 714 | sprintf(sub, "%03x/", i); | ^~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646] 714 | sprintf(sub, "%03x/", i); | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:16: note: 'sprintf' output between 5 and 10 bytes into a destination of size 6 714 | sprintf(sub, "%03x/", i); | ~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] 722 | sprintf(subsub, "%03x", j); | ^~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646] 722 | sprintf(subsub, "%03x", j); | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:20: note: 'sprintf' output between 4 and 9 bytes into a destination of size 6 722 | sprintf(subsub, "%03x", j); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_read_bonds': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: '%s' directive argument is null [-Wformat-overflow=] 147 | sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", | ^~ [ 30%] Building CXX object CMakeFiles/_cmd.dir/layer0/ContourSurf.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY 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-Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/ContourSurf.cpp.o -MF CMakeFiles/_cmd.dir/layer0/ContourSurf.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/ContourSurf.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/ContourSurf.cpp [ 30%] Building CXX object CMakeFiles/_cmd.dir/layer0/Crystal.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 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-mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Err.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Err.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Err.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Err.cpp [ 31%] Building CXX object CMakeFiles/_cmd.dir/layer0/Feedback.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Feedback.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Feedback.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Feedback.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.cpp [ 32%] Building CXX object CMakeFiles/_cmd.dir/layer0/Field.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN 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-I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/File.cpp.o -MF CMakeFiles/_cmd.dir/layer0/File.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/File.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/File.cpp [ 32%] Building CXX object CMakeFiles/_cmd.dir/layer0/GFXManager.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/GFXManager.cpp.o -MF CMakeFiles/_cmd.dir/layer0/GFXManager.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/GFXManager.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/GFXManager.cpp [ 33%] Building CXX object CMakeFiles/_cmd.dir/layer0/GenericBuffer.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/GenericBuffer.cpp.o -MF CMakeFiles/_cmd.dir/layer0/GenericBuffer.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/GenericBuffer.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/GenericBuffer.cpp [ 33%] Building CXX object CMakeFiles/_cmd.dir/layer0/GraphicsUtil.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/GraphicsUtil.cpp.o -MF CMakeFiles/_cmd.dir/layer0/GraphicsUtil.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/GraphicsUtil.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/GraphicsUtil.cpp [ 34%] Building CXX object CMakeFiles/_cmd.dir/layer0/Isosurf.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Isosurf.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Isosurf.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Isosurf.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Isosurf.cpp [ 34%] Building CXX object CMakeFiles/_cmd.dir/layer0/Map.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Map.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Map.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Map.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Map.cpp [ 35%] Building CXX object CMakeFiles/_cmd.dir/layer0/Match.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Match.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Match.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Match.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Match.cpp [ 35%] Building CXX object CMakeFiles/_cmd.dir/layer0/Matrix.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Matrix.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Matrix.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Matrix.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Matrix.cpp [ 35%] Building CXX object CMakeFiles/_cmd.dir/layer0/MemoryDebug.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/MemoryDebug.cpp.o -MF CMakeFiles/_cmd.dir/layer0/MemoryDebug.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/MemoryDebug.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/MemoryDebug.cpp In file included from /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71: In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [8, 12] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [16, 20] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [24, 28] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [32, 36] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [40, 44] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [48, 52] into destination object 'nx' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [8, 12] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [16, 20] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [24, 28] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [32, 36] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [40, 44] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [48, 52] into destination object 'ny' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [8, 12] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [16, 20] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [24, 28] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [32, 36] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [40, 44] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [48, 52] into destination object 'nz' of size 4 1494 | int32_t nx, ny, nz; | ^~ [ 36%] Building CXX object CMakeFiles/_cmd.dir/layer0/MemoryUsage.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/MemoryUsage.cpp.o -MF CMakeFiles/_cmd.dir/layer0/MemoryUsage.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/MemoryUsage.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/MemoryUsage.cpp [ 36%] Building CXX object CMakeFiles/_cmd.dir/layer0/MyPNG.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/MyPNG.cpp.o -MF CMakeFiles/_cmd.dir/layer0/MyPNG.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/MyPNG.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/MyPNG.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer0/MemoryUsage.cpp: In function 'size_t pymol::memory_usage()': /build/reproducible-path/pymol-3.1.0+dfsg/layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=] 38 | std::fscanf(fp, "%*zu%zu", &vmRSS); | ^~~~~~~~~ [ 37%] Building CXX object CMakeFiles/_cmd.dir/layer0/Parse.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Parse.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Parse.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Parse.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Parse.cpp [ 37%] Building CXX object CMakeFiles/_cmd.dir/layer0/Pixmap.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Pixmap.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Pixmap.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Pixmap.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Pixmap.cpp [ 37%] Building CXX object CMakeFiles/_cmd.dir/layer0/PostProcess.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/PostProcess.cpp.o -MF CMakeFiles/_cmd.dir/layer0/PostProcess.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/PostProcess.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/PostProcess.cpp In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [8, 12] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [16, 20] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [24, 28] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [32, 36] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [40, 44] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ In function 'void swap4_unaligned(void*, long int)', inlined from 'void {anonymous}::Blob::get_float(float*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36, inlined from 'void {anonymous}::Blob::get_int32(int32_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10, inlined from 'int handle_wrapped_v1({anonymous}::BlobMap&, uint32_t, bool, molfile_timestep_t*)' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1552:26, inlined from 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const' at /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1751:29: /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 54 | dataptr[0] = dataptr[3]; | ~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function 'int desres::molfile::DtrReader::frame_from_bytes(const void*, uint64_t, molfile_timestep_t*) const': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1548:21: note: at offset [48, 52] into destination object 'nz' of size 4 1548 | int32_t nx, ny, nz; | ^~ [ 38%] Building CXX object CMakeFiles/_cmd.dir/layer0/PrintUtils.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/PrintUtils.cpp.o -MF CMakeFiles/_cmd.dir/layer0/PrintUtils.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/PrintUtils.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/PrintUtils.cpp [ 38%] Building CXX object CMakeFiles/_cmd.dir/layer0/ShaderMgr.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/ShaderMgr.cpp.o -MF CMakeFiles/_cmd.dir/layer0/ShaderMgr.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/ShaderMgr.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/ShaderMgr.cpp [ 39%] Building CXX object CMakeFiles/_cmd.dir/layer0/ShaderPreprocessor.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/ShaderPreprocessor.cpp.o -MF CMakeFiles/_cmd.dir/layer0/ShaderPreprocessor.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/ShaderPreprocessor.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/ShaderPreprocessor.cpp [ 39%] Building CXX object CMakeFiles/_cmd.dir/layer0/ShaderPrg.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/ShaderPrg.cpp.o -MF CMakeFiles/_cmd.dir/layer0/ShaderPrg.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/ShaderPrg.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/ShaderPrg.cpp [ 40%] Building CXX object CMakeFiles/_cmd.dir/layer0/Sphere.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Sphere.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Sphere.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Sphere.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Sphere.cpp [ 40%] Building CXX object CMakeFiles/_cmd.dir/layer0/TTT.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable 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-I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Control.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Control.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Control.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/Control.cpp [ 49%] Building CXX object CMakeFiles/_cmd.dir/layer1/Extrude.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Extrude.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Extrude.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Extrude.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/Extrude.cpp [ 50%] Building CXX object CMakeFiles/_cmd.dir/layer1/Font.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Font.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Font.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Font.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/Font.cpp [ 50%] Building CXX object CMakeFiles/_cmd.dir/layer1/FontGLUT.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/FontGLUT.cpp.o -MF CMakeFiles/_cmd.dir/layer1/FontGLUT.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/FontGLUT.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/FontGLUT.cpp [ 51%] Building CXX object CMakeFiles/_cmd.dir/layer1/FontGLUT8x13.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/FontGLUT8x13.cpp.o -MF CMakeFiles/_cmd.dir/layer1/FontGLUT8x13.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/FontGLUT8x13.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/FontGLUT8x13.cpp [ 51%] Building CXX object CMakeFiles/_cmd.dir/layer1/FontGLUT9x15.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable 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-I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/FontGLUTHel10.cpp.o -MF CMakeFiles/_cmd.dir/layer1/FontGLUTHel10.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/FontGLUTHel10.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/FontGLUTHel10.cpp [ 52%] Building CXX object CMakeFiles/_cmd.dir/layer1/FontGLUTHel12.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/FontGLUTHel12.cpp.o -MF CMakeFiles/_cmd.dir/layer1/FontGLUTHel12.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/FontGLUTHel12.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/FontGLUTHel12.cpp [ 52%] Building CXX object CMakeFiles/_cmd.dir/layer1/FontGLUTHel18.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/FontGLUTHel18.cpp.o -MF CMakeFiles/_cmd.dir/layer1/FontGLUTHel18.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/FontGLUTHel18.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/FontGLUTHel18.cpp In file included from /build/reproducible-path/pymol-3.1.0+dfsg/include/tnt/tnt.h:45, from /build/reproducible-path/pymol-3.1.0+dfsg/layer0/ccealignmodule.cpp:39: In member function 'void TNT::Array1D::set_(T*, T*, const T&) [with T = double]', inlined from 'TNT::Array1D::Array1D(int, const T&) [with T = double]' at /build/reproducible-path/pymol-3.1.0+dfsg/include/tnt/tnt_array1d.h:119:6, inlined from 'PyObject* findBest(pcePoint, pcePoint, pathCache, int, int, int)' at /build/reproducible-path/pymol-3.1.0+dfsg/layer0/ccealignmodule.cpp:506:28: /build/reproducible-path/pymol-3.1.0+dfsg/include/tnt/tnt_array1d.h:283:20: warning: 'void* __builtin_memset(void*, int, long unsigned int)' specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 283 | *p = a; | ~~~^~~ [ 53%] Building CXX object CMakeFiles/_cmd.dir/layer1/FontType.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/FontType.cpp.o -MF CMakeFiles/_cmd.dir/layer1/FontType.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/FontType.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/FontType.cpp [ 53%] Building CXX object CMakeFiles/_cmd.dir/layer1/ImageUtils.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Movie.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Movie.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Movie.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/Movie.cpp [ 54%] Building CXX object CMakeFiles/_cmd.dir/layer1/Ortho.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 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CMakeFiles/_cmd.dir/layer1/Rep.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Rep.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Rep.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Rep.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/Rep.cpp [ 57%] Building CXX object CMakeFiles/_cmd.dir/layer1/Scene.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Scene.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Scene.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Scene.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/Scene.cpp [ 58%] Building CXX object CMakeFiles/_cmd.dir/layer1/SceneMouse.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SceneMouse.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SceneMouse.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SceneMouse.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SceneMouse.cpp [ 58%] Building CXX object CMakeFiles/_cmd.dir/layer1/ScenePicking.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/ScenePicking.cpp.o -MF CMakeFiles/_cmd.dir/layer1/ScenePicking.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/ScenePicking.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/ScenePicking.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer1/PyMOLObject.cpp: In function 'int ObjectMotion(pymol::CObject*, MViewAction, int, int, float, float, int, float, int, int, int, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer1/PyMOLObject.cpp:193:15: warning: ignoring return value of 'constexpr const _Tp& std::max(const _Tp&, const _Tp&) [with _Tp = int]', declared with attribute 'nodiscard' [-Wunused-result] 193 | std::max(0, first); | ~~~~~~~~^~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_uninitialized.h:63, from /usr/include/c++/15/memory:71, from /build/reproducible-path/pymol-3.1.0+dfsg/layer0/os_python.h:23, from /build/reproducible-path/pymol-3.1.0+dfsg/layer1/PyMOLObject.cpp:17: /usr/include/c++/15/bits/stl_algobase.h:258:5: note: declared here 258 | max(const _Tp& __a, const _Tp& __b) | ^~~ In file included from /usr/include/c++/15/bits/stl_algobase.h:64, from /usr/include/c++/15/bits/specfun.h:43, from /usr/include/c++/15/cmath:3913, from /usr/include/c++/15/math.h:36, from /build/reproducible-path/pymol-3.1.0+dfsg/layer0/os_std.h:24, from /build/reproducible-path/pymol-3.1.0+dfsg/layer1/Scene.cpp:18: /usr/include/c++/15/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper::type>::__type = float; typename decay<_Tp2>::type = float]': /build/reproducible-path/pymol-3.1.0+dfsg/layer1/Scene.cpp:1469:24: required from here 1469 | return std::make_pair(clip.m_front, clip.m_back); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1164 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ [ 59%] Building CXX object CMakeFiles/_cmd.dir/layer1/SceneRay.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SceneRay.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SceneRay.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SceneRay.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SceneRay.cpp [ 59%] Building CXX object CMakeFiles/_cmd.dir/layer1/SceneRender.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SceneRender.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SceneRender.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SceneRender.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SceneRender.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SceneMouse.cpp: In function 'void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)': /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SceneMouse.cpp:455:32: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=] 455 | " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G); | ^~ ~~~~ In file included from /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SceneMouse.cpp:19: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output 21 or more bytes (assuming 276) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SceneMouse.cpp:454:11: note: in expansion of macro 'PRINTFB' 454 | PRINTFB(G, FB_Scene, FB_Results) | ^~~~~~~ [ 59%] Building CXX object CMakeFiles/_cmd.dir/layer1/SceneView.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SceneView.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SceneView.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SceneView.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SceneView.cpp [ 60%] Building CXX object CMakeFiles/_cmd.dir/layer1/ScrollBar.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/ScrollBar.cpp.o -MF CMakeFiles/_cmd.dir/layer1/ScrollBar.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/ScrollBar.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/ScrollBar.cpp [ 60%] Building CXX object CMakeFiles/_cmd.dir/layer1/Seq.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Seq.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Seq.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Seq.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/Seq.cpp [ 61%] Building CXX object CMakeFiles/_cmd.dir/layer1/Setting.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src 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CMakeFiles/_cmd.dir/layer1/Setting.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/Setting.cpp [ 61%] Building CXX object CMakeFiles/_cmd.dir/layer1/Shaker.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Shaker.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Shaker.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Shaker.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/Shaker.cpp [ 62%] Building CXX object CMakeFiles/_cmd.dir/layer1/SymOp.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SymOp.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SymOp.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SymOp.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SymOp.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SymOp.cpp: In member function 'std::string pymol::SymOp::to_string() const': /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SymOp.cpp:37:32: warning: '%d' directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=] 37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5); | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132] 37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5); | ^~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132] /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SymOp.cpp:37:16: note: 'snprintf' output between 6 and 17 bytes into a destination of size 8 37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/_cmd.dir/layer1/SymOpPConv.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SymOpPConv.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SymOpPConv.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SymOpPConv.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/SymOpPConv.cpp [ 62%] Building CXX object CMakeFiles/_cmd.dir/layer1/SymOpTools.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable 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-Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Text.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Text.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Text.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer1/Text.cpp [ 64%] Building CXX object CMakeFiles/_cmd.dir/layer1/TypeFace.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 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-I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/CifFile.cpp.o -MF CMakeFiles/_cmd.dir/layer2/CifFile.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/CifFile.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/CifFile.cpp [ 67%] Building CXX object CMakeFiles/_cmd.dir/layer2/CifMoleculeReader.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src 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-Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/MmtfMoleculeReader.cpp.o -MF CMakeFiles/_cmd.dir/layer2/MmtfMoleculeReader.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/MmtfMoleculeReader.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/MmtfMoleculeReader.cpp [ 70%] Building CXX object CMakeFiles/_cmd.dir/layer2/Mol2Typing.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 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-ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/MolV3000.cpp.o -MF CMakeFiles/_cmd.dir/layer2/MolV3000.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/MolV3000.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/MolV3000.cpp [ 71%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectAlignment.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 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-I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectCallback.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectCallback.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectCallback.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectCallback.cpp [ 72%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectDist.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectMap.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectMap.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectMap.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp [ 75%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectMesh.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 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-I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 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-I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectSurface.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectSurface.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectSurface.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSurface.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMesh.cpp: In member function 'virtual void ObjectMesh::update()': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMesh.cpp:508:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] 508 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", | ^~ In file included from /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMesh.cpp:28: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 50 and 305 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMesh.cpp:507:9: note: in expansion of macro 'PRINTFB' 507 | PRINTFB(I->G, FB_ObjectMesh, FB_Errors) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMesh.cpp:541:38: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] 541 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G); | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 27 and 282 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMesh.cpp:540:13: note: in expansion of macro 'PRINTFB' 540 | PRINTFB(G, FB_ObjectMesh, FB_Details) | ^~~~~~~ [ 77%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectVolume.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectVolume.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectVolume.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectVolume.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectVolume.cpp [ 78%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepAngle.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepAngle.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepAngle.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepAngle.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepAngle.cpp [ 78%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepCartoon.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepCartoon.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepCartoon.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepCartoon.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepCartoon.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMesh.cpp:333:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 333 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output 31 or more bytes (assuming 286) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMesh.cpp:332:7: note: in expansion of macro 'PRINTFB' 332 | PRINTFB(I->G, FB_ObjectMesh, FB_Actions) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSlice.cpp: In member function 'virtual void ObjectSlice::update()': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSlice.cpp:639:42: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] 639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName | ^~ In file included from /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSlice.cpp:44: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 51 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSlice.cpp:638:9: note: in expansion of macro 'PRINTFB' 638 | PRINTFB(I->G, FB_ObjectSlice, FB_Errors) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSlice.cpp:650:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] 650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 28 and 283 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSlice.cpp:649:11: note: in expansion of macro 'PRINTFB' 649 | PRINTFB(I->G, FB_ObjectSlice, FB_Blather) | ^~~~~~~ [ 78%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepCylBond.cpp.o /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSurface.cpp:269:30: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 269 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G); | ^~ In file included from /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSurface.cpp:45: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output 34 or more bytes (assuming 289) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSurface.cpp:268:7: note: in expansion of macro 'PRINTFB' 268 | PRINTFB(I->G, FB_ObjectSurface, FB_Actions) | ^~~~~~~ /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepCylBond.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepCylBond.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepCylBond.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepCylBond.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule.cpp:7597:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=] 7597 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G) | ^~ ~~~~~~~ In file included from /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule.cpp:49: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 34 and 289 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule.cpp:7596:3: note: in expansion of macro 'PRINTFB' 7596 | PRINTFB(G, FB_ObjectMolecule, FB_Blather) | ^~~~~~~ [ 79%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepDihedral.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepDihedral.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepDihedral.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepDihedral.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepDihedral.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp: In function 'void ObjectMapDump(const ObjectMap*, const char*, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:5984:24: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=] 5984 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G); | ^~ In file included from /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:48: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output 30 or more bytes (assuming 285) into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:5983:5: note: in expansion of macro 'PRINTFB' 5983 | PRINTFB(om->G, FB_ObjectMap, FB_Actions) | ^~~~~~~ [ 79%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepDistDash.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepDistDash.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepDistDash.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepDistDash.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepDistDash.cpp [ 80%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepDistLabel.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepDistLabel.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepDistLabel.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepDistLabel.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepDistLabel.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectVolume.cpp:80:33: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 80 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName | ^~ In file included from /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectVolume.cpp:47: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 46 and 301 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectVolume.cpp:79:5: note: in expansion of macro 'PRINTFB' 79 | PRINTFB(G, FB_ObjectVolume, FB_Errors) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSurface.cpp: In member function 'virtual void ObjectSurface::update()': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSurface.cpp:494:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 494 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G); | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 30 and 285 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectSurface.cpp:493:13: note: in expansion of macro 'PRINTFB' 493 | PRINTFB(I->G, FB_ObjectSurface, FB_Details) | ^~~~~~~ [ 80%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepDot.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepDot.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepDot.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepDot.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepDot.cpp [ 81%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepEllipsoid.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepEllipsoid.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepEllipsoid.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepEllipsoid.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepEllipsoid.cpp [ 81%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepLabel.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepLabel.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepLabel.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepLabel.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepLabel.cpp [ 81%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepMesh.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepMesh.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepMesh.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepMesh.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepMesh.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule2.cpp:335:27: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] 335 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", | ^~ In file included from /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule2.cpp:36: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 26 and 291 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule2.cpp:334:7: note: in expansion of macro 'PRINTFB' 334 | PRINTFB(G, FB_ObjectMolecule, FB_Actions) | ^~~~~~~ [ 81%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepNonbondedSphere.cpp.o [ 82%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepNonbonded.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepNonbonded.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepNonbonded.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepNonbonded.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepNonbonded.cpp /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepNonbondedSphere.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepNonbondedSphere.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepNonbondedSphere.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepNonbondedSphere.cpp [ 83%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepRibbon.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepRibbon.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepRibbon.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepRibbon.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepRibbon.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:4291:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4291 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:4290:3: note: in expansion of macro 'PRINTFB' 4290 | PRINTFB(I->G, FB_ObjectMap, FB_Details) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:4291:18: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] 4291 | " ObjectMap: %s\n", cc ENDFB(I->G); | ^~ ~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:4290:3: note: in expansion of macro 'PRINTFB' 4290 | PRINTFB(I->G, FB_ObjectMap, FB_Details) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule.cpp: In member function 'virtual void ObjectMolecule::update()': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule.cpp:10623:82: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] 10623 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 68 and 333 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule.cpp:10622:13: note: in expansion of macro 'PRINTFB' 10622 | PRINTFB(G, FB_ObjectMolecule, FB_Blather) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule.cpp:10749:43: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] 10749 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~ 10750 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule.cpp:10749:21: note: directive argument in the range [-2147483647, 2147483647] 10749 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMolecule.cpp:10749:14: note: 'sprintf' output between 78 and 2036 bytes into a destination of size 1024 10749 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 10750 | buffer, v[0], v[1], v[2], state + 1, mode, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepSphere.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepSphere.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepSphere.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepSphere.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepSphere.cpp [ 83%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepSphereGenerate.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepSphereGenerate.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepSphereGenerate.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepSphereGenerate.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepSphereGenerate.cpp [ 84%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepSphereImmediate.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepSphereImmediate.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepSphereImmediate.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepSphereImmediate.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepSphereImmediate.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:2962:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2962 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)', inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:4804:25, inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:4836:28: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 16 and 1039 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:2961:5: note: in expansion of macro 'PRINTFB' 2961 | PRINTFB(I->G, FB_ObjectMap, FB_Details) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:2971:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2971 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)', inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:4804:25, inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:4836:28: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 16 and 1039 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:2970:5: note: in expansion of macro 'PRINTFB' 2970 | PRINTFB(I->G, FB_ObjectMap, FB_Details) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:2977:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 2977 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)', inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:4804:25, inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:4836:28: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 16 and 1039 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:2976:5: note: in expansion of macro 'PRINTFB' 2976 | PRINTFB(I->G, FB_ObjectMap, FB_Details) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:3059:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] 3059 | " PHIStrToMap: %s\n", cc ENDFB(I->G); | ^~ ~~ In function 'int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)', inlined from 'ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)' at /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:4804:25, inlined from 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)' at /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:4836:28: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 16 and 1039 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer2/ObjectMap.cpp:3058:5: note: in expansion of macro 'PRINTFB' 3058 | PRINTFB(I->G, FB_ObjectMap, FB_Details) | ^~~~~~~ [ 84%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepSurface.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepSurface.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepSurface.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepSurface.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepSurface.cpp [ 85%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepWireBond.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepWireBond.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepWireBond.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepWireBond.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer2/RepWireBond.cpp [ 85%] Building CXX object CMakeFiles/_cmd.dir/layer2/Sculpt.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/Sculpt.cpp.o -MF CMakeFiles/_cmd.dir/layer2/Sculpt.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/Sculpt.cpp.o -c 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-I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/MaeExportHelpers.cpp.o -MF CMakeFiles/_cmd.dir/layer3/MaeExportHelpers.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/MaeExportHelpers.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer3/MaeExportHelpers.cpp [ 90%] Building CXX object CMakeFiles/_cmd.dir/layer3/MoleculeExporter.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/MoleculeExporter.cpp.o -MF CMakeFiles/_cmd.dir/layer3/MoleculeExporter.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/MoleculeExporter.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer3/MoleculeExporter.cpp [ 90%] Building CXX object CMakeFiles/_cmd.dir/layer3/MovieScene.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/MovieScene.cpp.o -MF CMakeFiles/_cmd.dir/layer3/MovieScene.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/MovieScene.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer3/MovieScene.cpp [ 91%] Building CXX object CMakeFiles/_cmd.dir/layer3/PlugIOManager.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/PlugIOManager.cpp.o -MF CMakeFiles/_cmd.dir/layer3/PlugIOManager.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/PlugIOManager.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer3/PlugIOManager.cpp [ 91%] Building CXX object CMakeFiles/_cmd.dir/layer3/RingFinder.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/RingFinder.cpp.o -MF CMakeFiles/_cmd.dir/layer3/RingFinder.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/RingFinder.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer3/RingFinder.cpp In file included from /build/reproducible-path/pymol-3.1.0+dfsg/layer1/Setting.h:27, from /build/reproducible-path/pymol-3.1.0+dfsg/layer1/PyMOLObject.h:25, from /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.h:27, from /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:38: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Result.h: In constructor 'pymol::Result::Result(type) [with ResultT = std::pair]': /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Result.h:99:3: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 99 | Result(type r) : m_result(std::move(r)) {} | ^~~~~~ [ 91%] Building CXX object CMakeFiles/_cmd.dir/layer3/Seeker.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/Seeker.cpp.o -MF CMakeFiles/_cmd.dir/layer3/Seeker.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/Seeker.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Seeker.cpp [ 92%] Building CXX object CMakeFiles/_cmd.dir/layer3/Selector.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/Selector.cpp.o -MF CMakeFiles/_cmd.dir/layer3/Selector.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/Selector.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Selector.cpp [ 92%] Building CXX object CMakeFiles/_cmd.dir/layer3/SelectorTmp.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/SelectorTmp.cpp.o -MF CMakeFiles/_cmd.dir/layer3/SelectorTmp.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/SelectorTmp.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer3/SelectorTmp.cpp [ 93%] Building CXX object CMakeFiles/_cmd.dir/layer3/SpecRec.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/SpecRec.cpp.o -MF CMakeFiles/_cmd.dir/layer3/SpecRec.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/SpecRec.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer3/SpecRec.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Editor.cpp:1935:29: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] 1935 | " Editor: grabbing (%s).", name ENDFB(G); | ^~ ~~~~ In file included from /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Editor.cpp:42: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 22 and 277 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Editor.cpp:1934:7: note: in expansion of macro 'PRINTFB' 1934 | PRINTFB(G, FB_Editor, FB_Blather) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Editor.cpp:337:29: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=] 337 | sprintf(buffer, "(byres %s)", name); | ^~ ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Editor.cpp:337:12: note: 'sprintf' output between 9 and 264 bytes into a destination of size 256 337 | sprintf(buffer, "(byres %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Editor.cpp:339:31: warning: '%s' directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=] 339 | sprintf(buffer, "(bychain %s)", name); | ^~ ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Editor.cpp:339:12: note: 'sprintf' output between 11 and 266 bytes into a destination of size 256 339 | sprintf(buffer, "(bychain %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Editor.cpp:341:32: warning: '%s' directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=] 341 | sprintf(buffer, "(byobject %s)", name); | ^~ ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Editor.cpp:341:12: note: 'sprintf' output between 12 and 267 bytes into a destination of size 256 341 | sprintf(buffer, "(byobject %s)", name); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object CMakeFiles/_cmd.dir/layer3/SpecRecSpecial.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/SpecRecSpecial.cpp.o -MF CMakeFiles/_cmd.dir/layer3/SpecRecSpecial.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/SpecRecSpecial.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer3/SpecRecSpecial.cpp [ 94%] Building CXX object CMakeFiles/_cmd.dir/layer4/Cmd.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer4/Cmd.cpp.o -MF CMakeFiles/_cmd.dir/layer4/Cmd.cpp.o.d -o CMakeFiles/_cmd.dir/layer4/Cmd.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer4/Cmd.cpp [ 94%] Building CXX object CMakeFiles/_cmd.dir/layer4/Menu.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer4/Menu.cpp.o -MF CMakeFiles/_cmd.dir/layer4/Menu.cpp.o.d -o CMakeFiles/_cmd.dir/layer4/Menu.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer4/Menu.cpp [ 94%] Building CXX object CMakeFiles/_cmd.dir/layer4/PopUp.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer4/PopUp.cpp.o -MF CMakeFiles/_cmd.dir/layer4/PopUp.cpp.o.d -o CMakeFiles/_cmd.dir/layer4/PopUp.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer4/PopUp.cpp [ 95%] Building CXX object CMakeFiles/_cmd.dir/layer5/PyMOL.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer5/PyMOL.cpp.o -MF CMakeFiles/_cmd.dir/layer5/PyMOL.cpp.o.d -o CMakeFiles/_cmd.dir/layer5/PyMOL.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer5/PyMOL.cpp [ 95%] Building CXX object CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o -MF CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o.d -o CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer5/TestPyMOL.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer3/PlugIOManager.cpp: In function 'pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/PlugIOManager.cpp:941:65: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] 941 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); | ^~ In file included from /build/reproducible-path/pymol-3.1.0+dfsg/layer3/PlugIOManager.cpp:28: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 58 and 313 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/PlugIOManager.cpp:940:7: note: in expansion of macro 'PRINTFB' 940 | PRINTFB(G, FB_ObjectMolecule, FB_Errors) | ^~~~~~~ [ 96%] Building CXX object CMakeFiles/_cmd.dir/layer5/main.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer5/main.cpp.o -MF CMakeFiles/_cmd.dir/layer5/main.cpp.o.d -o CMakeFiles/_cmd.dir/layer5/main.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/layer5/main.cpp [ 96%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/ov/src/OVContext.cpp [ 97%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVHeap.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVHeap.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVHeap.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVHeap.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/ov/src/OVHeap.cpp [ 97%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVHeapArray.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVHeapArray.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVHeapArray.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVHeapArray.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/ov/src/OVHeapArray.cpp [ 97%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVLexicon.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 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-D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVOneToAny.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVOneToAny.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVOneToAny.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/ov/src/OVOneToAny.cpp [ 98%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVOneToOne.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 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CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/ov/src/OVRandom.cpp [ 99%] Building CXX object CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o /usr/bin/c++ -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NO_MSGPACKC -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/include -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/include -I/build/reproducible-path/pymol-3.1.0+dfsg/ov/src -I/build/reproducible-path/pymol-3.1.0+dfsg/layer0 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer1 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer2 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer3 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer4 -I/build/reproducible-path/pymol-3.1.0+dfsg/layer5 -I/build/reproducible-path/pymol-3.1.0+dfsg/build/generated -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o -c /build/reproducible-path/pymol-3.1.0+dfsg/ov/src/ov_utility.cpp /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:9120:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] 9120 | " Remove: eliminated %d atoms in model \"%s\".\n", | ^~ In file included from /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:94: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 42 and 307 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:9119:15: note: in expansion of macro 'PRINTFB' 9119 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11551:28: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11551 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ 11552 | name, nSet, obj->Name ENDF(G); | ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11551:17: note: directive argument in the range [1, 2147483647] 11551 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 560 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11550:15: note: in expansion of macro 'PRINTF' 11550 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11632:26: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11632 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~ 11633 | name, nSet, obj->Name ENDF(G); | ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11632:15: note: directive argument in the range [1, 2147483647] 11632 | " Getting: %s for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output between 38 and 556 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11631:13: note: in expansion of macro 'PRINTF' 11631 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11732:62: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=] 11732 | " Setting: %s set for %d bonds in object \"%s\".\n", | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 306) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11731:17: note: in expansion of macro 'PRINTF' 11731 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11811:26: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 11811 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~ 11812 | name, nSet, rec->obj->Name ENDF(G); | ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11811:15: note: directive argument in the range [1, 2147483647] 11811 | " Setting: %s unset for %d bonds in object \"%s\".\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output between 44 and 562 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11810:13: note: in expansion of macro 'PRINTF' 11810 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, pymol::CObject*, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12353:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12353 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12354 | name, value2, obj->Name, state + 1 ENDF(G); | ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12353:19: note: directive argument in the range [1, 2147483647] 12353 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12352:17: note: in expansion of macro 'PRINTF' 12352 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12345:30: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12345 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12346 | name, value2, obj->Name ENDF(G); | ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12344:17: note: in expansion of macro 'PRINTF' 12344 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12324:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12324 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12324:11: note: in expansion of macro 'PRINTF' 12324 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12256:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12256 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ 12257 | name, op.i4, rec->obj->Name ENDF(G); | ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output between 42 and 561 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12255:23: note: in expansion of macro 'PRINTF' 12255 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12224:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12224 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 12225 | name, value2, nObj, state + 1 ENDF(G); | ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12224:21: note: directive argument in the range [1, 2147483647] 12224 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12224:21: note: directive argument in the range [1, 2147483647] /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1338 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12223:19: note: in expansion of macro 'PRINTF' 12223 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12221:32: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12221 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~ ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12221:21: note: directive argument in the range [1, 2147483647] 12221 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1320 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12220:19: note: in expansion of macro 'PRINTF' 12220 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12288:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12288 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12289 | name, value2, rec->obj->Name, state + 1 ENDF(G); | ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12288:25: note: directive argument in the range [1, 2147483647] 12288 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output between 43 and 1584 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12287:23: note: in expansion of macro 'PRINTF' 12287 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12280:36: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12280 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12281 | name, value2, rec->obj->Name ENDF(G); | ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output between 34 and 1566 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12279:23: note: in expansion of macro 'PRINTF' 12279 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12184:29: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] 12184 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~ ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output between 21 and 1298 bytes into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12184:11: note: in expansion of macro 'PRINTF' 12184 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:5973:46: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=] 5973 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__, | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 84 and 339 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:5972:7: note: in expansion of macro 'PRINTFB' 5972 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:5982:43: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=] 5982 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G); | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 311 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:5981:7: note: in expansion of macro 'PRINTFB' 5981 | PRINTFB(G, FB_Executive, FB_Details) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:5973:46: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=] 5973 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__, | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 84 and 339 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:5972:7: note: in expansion of macro 'PRINTFB' 5972 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Selector.cpp:1717:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] 1717 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", | ^~ In file included from /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Selector.cpp:37: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 59 and 324 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Selector.cpp:1716:19: note: in expansion of macro 'PRINTFB' 1716 | PRINTFB(G, FB_Selector, FB_Warnings) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12465:68: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=] 12465 | " Setting: %s unset for %d atoms in object \"%s\".\n", | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output 44 or more bytes (assuming 299) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12464:21: note: in expansion of macro 'PRINTF' 12464 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12487:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12487 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12487:25: note: directive argument in the range [1, 2147483647] 12487 | " Setting: %s unset in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output 41 or more bytes (assuming 305) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12486:23: note: in expansion of macro 'PRINTF' 12486 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12481:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] 12481 | " Setting: %s unset in object \"%s\".\n", | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output 32 or more bytes (assuming 287) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12480:23: note: in expansion of macro 'PRINTF' 12480 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In member function 'virtual int CExecutive::drag(int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:15625:55: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 15625 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ^~ 15626 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:15625:26: note: 'sprintf' output between 32 and 1057 bytes into a destination of size 1024 15625 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 15626 | order_input, (location == -2) ? "upper" : "current"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int, pymol::zstring_view)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:9484:67: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=] 9484 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt, | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 314 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:9483:17: note: in expansion of macro 'PRINTFB' 9483 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:9496:59: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=] 9496 | " Unbond: %d bonds removed from model \"%s\".\n", | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 41 and 306 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:9495:17: note: in expansion of macro 'PRINTFB' 9495 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:9471:53: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=] 9471 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 35 and 300 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:9470:17: note: in expansion of macro 'PRINTFB' 9470 | PRINTFB(G, FB_Editor, FB_Actions) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'pymol::Result<> ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, pymol::zstring_view, int, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12004:70: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=] 12004 | " Setting: %s set for %d atoms in object \"%s\".\n", | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output 42 or more bytes (assuming 297) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12003:25: note: in expansion of macro 'PRINTF' 12003 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11915:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11915 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~ 11916 | name, value, nObj, state + 1 ENDF(G); | ~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11915:21: note: directive argument in the range [1, 2147483647] 11915 | " Setting: %s set to %s in %d objects, state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11915:21: note: directive argument in the range [1, 2147483647] /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1084) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11914:19: note: in expansion of macro 'PRINTF' 11914 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11912:42: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11912 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~ ~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11912:21: note: directive argument in the range [1, 2147483647] 11912 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1066) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11911:19: note: in expansion of macro 'PRINTF' 11911 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12036:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 12036 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~ 12037 | name, value, rec->obj->Name, state + 1 ENDF(G); | ~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12036:25: note: directive argument in the range [1, 2147483647] 12036 | " Setting: %s set to %s in object \"%s\", state %d.\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output 43 or more bytes (assuming 1330) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12035:23: note: in expansion of macro 'PRINTF' 12035 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12029:46: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 12029 | " Setting: %s set to %s in object \"%s\".\n", | ^~ 12030 | name, value, rec->obj->Name ENDF(G); | ~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output 34 or more bytes (assuming 1312) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:12028:23: note: in expansion of macro 'PRINTF' 12028 | PRINTF | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11871:39: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=] 11871 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); | ^~ ~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:282:53: note: 'snprintf' output 21 or more bytes (assuming 1044) into a destination of size 255 282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:11871:11: note: in expansion of macro 'PRINTF' 11871 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); | ^~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:14601:37: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] 14601 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n", | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 73 and 328 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:14600:7: note: in expansion of macro 'PRINTFB' 14600 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:14596:36: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] 14596 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 61 and 316 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:14595:7: note: in expansion of macro 'PRINTFB' 14595 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:14627:11: warning: 'char* strcpy(char*, const char*)' writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 14627 | strcpy(rec->name, obj->Name); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ cc1plus: note: destination object is likely at address zero /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:2275:40: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] 2275 | " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name | ^~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 36 and 546 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:2274:17: note: in expansion of macro 'PRINTFB' 2274 | PRINTFB(G, FB_Executive, FB_Actions) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'pymol::Result > ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:3535:41: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=] 3535 | " Warning: Invalid characters in '%s' have been replaced or stripped\n", | ^~ 3536 | name ENDFB(G); | ~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 67 and 322 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:3534:5: note: in expansion of macro 'PRINTFB' 3534 | PRINTFB(G, FB_Executive, FB_Warnings) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:5097:57: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] 5097 | " Executive: skipping unrecognized object \"%s\" of type %d.\n", | ^~ In function 'int ExecutiveSetNamedEntries(PyMOLGlobals*, PyObject*, int, int, int)', inlined from 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)' at /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:5727:38: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 56 and 321 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:5096:11: note: in expansion of macro 'PRINTFB' 5096 | PRINTFB(G, FB_Executive, FB_Errors) | ^~~~~~~ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)': /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:5122:58: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=] 5122 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G); | ^~ In function 'int ExecutiveSetNamedEntries(PyMOLGlobals*, PyObject*, int, int, int)', inlined from 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)' at /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:5727:38: /build/reproducible-path/pymol-3.1.0+dfsg/layer0/Feedback.h:274:15: note: 'snprintf' output between 49 and 304 bytes into a destination of size 255 274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, | ^ /build/reproducible-path/pymol-3.1.0+dfsg/layer3/Executive.cpp:5121:9: note: in expansion of macro 'PRINTFB' 5121 | PRINTFB(G, FB_Executive, FB_Errors) | ^~~~~~~ [100%] Linking CXX shared library 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The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. akeFiles/_cmd.dir/layer3/SpecRecSpecial.cpp.o CMakeFiles/_cmd.dir/layer4/Cmd.cpp.o CMakeFiles/_cmd.dir/layer4/Menu.cpp.o CMakeFiles/_cmd.dir/layer4/PopUp.cpp.o CMakeFiles/_cmd.dir/layer5/PyMOL.cpp.o CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o CMakeFiles/_cmd.dir/layer5/main.cpp.o CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o CMakeFiles/_cmd.dir/ov/src/OVHeap.cpp.o CMakeFiles/_cmd.dir/ov/src/OVHeapArray.cpp.o CMakeFiles/_cmd.dir/ov/src/OVLexicon.cpp.o CMakeFiles/_cmd.dir/ov/src/OVOneToAny.cpp.o CMakeFiles/_cmd.dir/ov/src/OVOneToOne.cpp.o CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -fopenmp gmake[3]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd' [100%] Built target _cmd gmake[2]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd/CMakeFiles 0 gmake[1]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd' cmake /build/reproducible-path/pymol-3.1.0+dfsg -DTARGET_NAME=_champ -DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/champ -DCMAKE_BUILD_TYPE=Release -DALL_INC_DIR=contrib/champ;/usr/include/python3.13;/usr/include/python3.13; -DALL_SRC=contrib/champ/champ.c;contrib/champ/champ_module.c;contrib/champ/chiral.c;contrib/champ/err2.c;contrib/champ/feedback2.c;contrib/champ/list.c;contrib/champ/os_memory.c;contrib/champ/sort.c;contrib/champ/strblock.c;contrib/champ/vla.c; -DALL_DEF= -DALL_LIB_DIR=/usr/lib; -DALL_LIB= -DALL_COMP_ARGS= -DALL_EXT_LINK= -DSHARED_SUFFIX=.cpython-313-aarch64-linux-gnu.so -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.9s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ cmake --build . --config Release -j12 gmake[1]: Entering directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ' /usr/bin/cmake -S/build/reproducible-path/pymol-3.1.0+dfsg -B/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ/CMakeFiles /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[2]: Entering directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ' /usr/bin/gmake -f CMakeFiles/_champ.dir/build.make CMakeFiles/_champ.dir/depend gmake[3]: Entering directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ' cd /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pymol-3.1.0+dfsg /build/reproducible-path/pymol-3.1.0+dfsg /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ/CMakeFiles/_champ.dir/DependInfo.cmake "--color=" gmake[3]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ' /usr/bin/gmake -f CMakeFiles/_champ.dir/build.make CMakeFiles/_champ.dir/build gmake[3]: Entering directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ' [ 9%] Building C object CMakeFiles/_champ.dir/contrib/champ/champ_module.c.o [ 18%] Building C object CMakeFiles/_champ.dir/contrib/champ/err2.c.o /usr/bin/cc -D_champ_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/champ_module.c.o -MF CMakeFiles/_champ.dir/contrib/champ/champ_module.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/champ_module.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ/champ_module.c [ 27%] Building C object CMakeFiles/_champ.dir/contrib/champ/chiral.c.o /usr/bin/cc -D_champ_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/err2.c.o -MF CMakeFiles/_champ.dir/contrib/champ/err2.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/err2.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ/err2.c [ 36%] Building C object CMakeFiles/_champ.dir/contrib/champ/champ.c.o /usr/bin/cc -D_champ_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/champ.c.o -MF CMakeFiles/_champ.dir/contrib/champ/champ.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/champ.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ/champ.c [ 45%] Building C object CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o /usr/bin/cc -D_champ_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/chiral.c.o -MF CMakeFiles/_champ.dir/contrib/champ/chiral.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/chiral.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ/chiral.c [ 54%] Building C object CMakeFiles/_champ.dir/contrib/champ/list.c.o [ 63%] Building C object CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o /usr/bin/cc -D_champ_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/list.c.o -MF CMakeFiles/_champ.dir/contrib/champ/list.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/list.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ/list.c [ 72%] Building C object CMakeFiles/_champ.dir/contrib/champ/sort.c.o /usr/bin/cc -D_champ_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/sort.c.o -MF CMakeFiles/_champ.dir/contrib/champ/sort.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/sort.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ/sort.c /usr/bin/cc -D_champ_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o -MF CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ/feedback2.c [ 81%] Building C object CMakeFiles/_champ.dir/contrib/champ/vla.c.o [ 90%] Building C object CMakeFiles/_champ.dir/contrib/champ/strblock.c.o /usr/bin/cc -D_champ_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o -MF CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ/os_memory.c /usr/bin/cc -D_champ_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/strblock.c.o -MF CMakeFiles/_champ.dir/contrib/champ/strblock.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/strblock.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ/strblock.c /usr/bin/cc -D_champ_EXPORTS -I/build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ -I/usr/include/python3.13 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/vla.c.o -MF CMakeFiles/_champ.dir/contrib/champ/vla.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/vla.c.o -c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ/vla.c /build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ/os_memory.c: In function 'OSMemoryZero': /build/reproducible-path/pymol-3.1.0+dfsg/contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 55 | while(count&&(((int)p)&mask)) { | ^ [100%] Linking C shared library /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/champ/_champ.cpython-313-aarch64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/_champ.dir/link.txt --verbose=1 /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pymol-3.1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/_champ.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,_champ.cpython-313-aarch64-linux-gnu.so -o /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/champ/_champ.cpython-313-aarch64-linux-gnu.so CMakeFiles/_champ.dir/contrib/champ/champ.c.o CMakeFiles/_champ.dir/contrib/champ/champ_module.c.o CMakeFiles/_champ.dir/contrib/champ/chiral.c.o CMakeFiles/_champ.dir/contrib/champ/err2.c.o CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o CMakeFiles/_champ.dir/contrib/champ/list.c.o CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o CMakeFiles/_champ.dir/contrib/champ/sort.c.o CMakeFiles/_champ.dir/contrib/champ/strblock.c.o CMakeFiles/_champ.dir/contrib/champ/vla.c.o gmake[3]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ' [100%] Built target _champ gmake[2]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ/CMakeFiles 0 gmake[1]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pymol-3.1.0+dfsg' echo "FIXME: Test ends up with: AttributeError: module 'pymol' has no attribute 'start_pymol'" FIXME: Test ends up with: AttributeError: module 'pymol' has no attribute 'start_pymol' echo "Unfortunately upstream has removed the script that was used for testing from upstream source" Unfortunately upstream has removed the script that was used for testing from upstream source make[1]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing modules/pymol.egg-info/PKG-INFO /usr/lib/python3/dist-packages/setuptools/_core_metadata.py:163: SetuptoolsDeprecationWarning: Invalid config. !! ******************************************************************************** newlines are not allowed in `summary` and will break in the future ******************************************************************************** !! write_field('Summary', single_line(summary)) writing dependency_links to modules/pymol.egg-info/dependency_links.txt writing entry points to modules/pymol.egg-info/entry_points.txt writing requirements to modules/pymol.egg-info/requires.txt writing top-level names to modules/pymol.egg-info/top_level.txt reading manifest file 'modules/pymol.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'modules/pymol.egg-info/SOURCES.txt' running build_ext cmake /build/reproducible-path/pymol-3.1.0+dfsg -DTARGET_NAME=_cmd -DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol -DCMAKE_BUILD_TYPE=Release -DALL_INC_DIR=include;contrib/uiuc/plugins/include;ov/src;layer0;layer1;layer2;layer3;layer4;layer5;build/generated;contrib/uiuc/plugins/molfile_plugin/src;/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include;/usr/include;/usr/include/freetype2;/usr/include/libxml2;/usr/include/python3.13;/usr/include/python3.13; -DALL_SRC=build/generated/ShaderText.cpp;contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c;contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c;contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c;contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c;contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/carplugin.c;contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/corplugin.c;contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c;contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c;contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c;contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c;contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/hash.c;contrib/uiuc/plugins/molfile_plugin/src/inthash.c;contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c;contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c;contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c;contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c;contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c;contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c;contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c;contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c;contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c;contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c;layer0/Bezier.cpp;layer0/Block.cpp;layer0/CarveHelper.cpp;layer0/ContourSurf.cpp;layer0/Crystal.cpp;layer0/Err.cpp;layer0/Feedback.cpp;layer0/Field.cpp;layer0/File.cpp;layer0/GFXManager.cpp;layer0/GenericBuffer.cpp;layer0/GraphicsUtil.cpp;layer0/Isosurf.cpp;layer0/Map.cpp;layer0/Match.cpp;layer0/Matrix.cpp;layer0/MemoryDebug.cpp;layer0/MemoryUsage.cpp;layer0/MyPNG.cpp;layer0/Parse.cpp;layer0/Pixmap.cpp;layer0/PostProcess.cpp;layer0/PrintUtils.cpp;layer0/ShaderMgr.cpp;layer0/ShaderPreprocessor.cpp;layer0/ShaderPrg.cpp;layer0/Sphere.cpp;layer0/TTT.cpp;layer0/Tetsurf.cpp;layer0/Texture.cpp;layer0/Tracker.cpp;layer0/Triangle.cpp;layer0/Util.cpp;layer0/Util2.cpp;layer0/Vector.cpp;layer0/Word.cpp;layer0/ccealignmodule.cpp;layer0/marching_cubes.cpp;layer0/os_gl.cpp;layer1/Basis.cpp;layer1/ButMode.cpp;layer1/CGO.cpp;layer1/CGOGL.cpp;layer1/CGORenderer.cpp;layer1/COLLADA.cpp;layer1/Camera.cpp;layer1/Character.cpp;layer1/Color.cpp;layer1/Control.cpp;layer1/Extrude.cpp;layer1/Font.cpp;layer1/FontGLUT.cpp;layer1/FontGLUT8x13.cpp;layer1/FontGLUT9x15.cpp;layer1/FontGLUTHel10.cpp;layer1/FontGLUTHel12.cpp;layer1/FontGLUTHel18.cpp;layer1/FontType.cpp;layer1/ImageUtils.cpp;layer1/Movie.cpp;layer1/Ortho.cpp;layer1/P.cpp;layer1/PConv.cpp;layer1/Picking.cpp;layer1/Pop.cpp;layer1/P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-DALL_DEF=_PYMOL_LIBPNG;_PYMOL_FREETYPE;PYMOL_OPENMP;_PYMOL_VMD_PLUGINS;_HAVE_LIBXML;_PYMOL_NO_MSGPACKC;_PYMOL_NO_MAIN;_PYMOL_NUMPY; -DALL_LIB_DIR=/usr/lib; -DALL_LIB=png;freetype;xml2;GL;GLEW;netcdf; -DALL_COMP_ARGS=-Werror=return-type;-Wunused-variable;-Wno-switch;-Wno-narrowing;-Wno-char-subscripts;-O3;-fopenmp; -DALL_EXT_LINK=-fopenmp -DSHARED_SUFFIX=.cpython-313-aarch64-linux-gnu.so -- Configuring done (0.1s) -- Generating done (0.1s) -- Build files have been written to: /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd cmake --build . --config Release -j12 gmake[1]: Entering directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd' /usr/bin/cmake -S/build/reproducible-path/pymol-3.1.0+dfsg -B/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. akeFiles/_cmd.dir/layer3/SpecRecSpecial.cpp.o CMakeFiles/_cmd.dir/layer4/Cmd.cpp.o CMakeFiles/_cmd.dir/layer4/Menu.cpp.o CMakeFiles/_cmd.dir/layer4/PopUp.cpp.o CMakeFiles/_cmd.dir/layer5/PyMOL.cpp.o CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o CMakeFiles/_cmd.dir/layer5/main.cpp.o CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o CMakeFiles/_cmd.dir/ov/src/OVHeap.cpp.o CMakeFiles/_cmd.dir/ov/src/OVHeapArray.cpp.o CMakeFiles/_cmd.dir/ov/src/OVLexicon.cpp.o CMakeFiles/_cmd.dir/ov/src/OVOneToAny.cpp.o CMakeFiles/_cmd.dir/ov/src/OVOneToOne.cpp.o CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -fopenmp gmake[3]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_cmd' [100%] Built target _cmd gmake[2]: Leaving directory 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'/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ' gmake[3]: Nothing to be done for 'CMakeFiles/_champ.dir/build'. gmake[3]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ' [100%] Built target _champ gmake[2]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ/CMakeFiles 0 gmake[1]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg/build/temp.linux-aarch64-cpython-313/_champ' running install_lib creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/web creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/web/examples copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/web/examples/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/web/examples copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/web/examples/justhttpd.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/web/examples creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bmin/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bmin/commands.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bmin/realtime.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bmin/state.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bmin copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bmin/util.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bmin creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/champ copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/champ/_champ.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/champ copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/champ/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/champ copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/champ/amber99.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/champ copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/champ/assign.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/champ copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/champ/formal_charges.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/champ creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/fast copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/fast/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/fast creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/fragments copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/fragments/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/fragments creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/mmtf copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/mmtf/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/mmtf copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/mmtf/io.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/mmtf creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/tinker/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/tinker/amber.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/tinker/keyword.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/tinker/realtime.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/tinker/state.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/tinker copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/arc.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bond_amber.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bond_mmff.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/bonds.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/brick.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/cc1.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/charge.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/cif.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/cpv.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/dictdb.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/gamess1.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/gms.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/hetatm.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/io.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/lst.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/mae.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/map.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/mass.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/mmd.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/models.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/mol.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/mol2.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/neighbor.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/pdb.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/pkl.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/place.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/protein.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/protein_amber.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/protein_amber99.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/protein_mmff.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/protein_residues.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/sdf.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/solvate.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/water_amber.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/water_residues.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/chempy/xyz.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/askpartial.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/change_confirm.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/colors.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/create_shortcut.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/fetch.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/help_shortcut.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/load_aln.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/load_mae.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/load_map.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/load_traj.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/movieexport.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/pluginmanager.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/png.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/props.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/render.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/save_molecule.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/save_object.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/shortcut_menu.ui -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/forms/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/syntax/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/syntax/pml.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/syntax/python.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/syntax copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/TextEditor.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/builder.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/file_dialogs.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/keymapping.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/mimic_tk.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/properties_dialog.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/scene_bin_gui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/shortcut_menu_gui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_qt/volume.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/skins creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/skins/demo copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/skins/demo creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/skins/normal copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/skins/normal copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/skins/normal copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/skins/normal/builder.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/skins/normal copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/skins/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/skins creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/startup copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/startup/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/startup copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/ColorEditor.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/Demo.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/PMGApp.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/SetEditor.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/Setting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/TextEditor.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pmg_tk/volume.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/_cmd.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/Qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/Qt/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/Qt copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/Qt/utils.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/Qt creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/plugins/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/plugins/installation.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/plugins/legacysupport.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/plugins/managergui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/plugins/managergui_qt.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/plugins copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/plugins/repository.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/plugins creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/stereochemistry copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/stereochemistry/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/stereochemistry creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/annotation.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/appearance.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/benchmark.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/box.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/charge.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/cleanup.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/command.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/demo.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/density.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/distance.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/dragging.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/filter.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/label.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/measurement.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/message.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/mutagenesis.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/nucmutagenesis.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/openvr.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/pair_fit.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/pseudoatom.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/renaming.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/sculpting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/security.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/stereodemo.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizard/toggle.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/__main__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/_gui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/api.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/callback.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/cgo.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/cgobuilder.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/checking.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/cmd.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/colorprinting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/colorramping.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/commanding.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/completing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/computing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/constants.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/constants_palette.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/controlling.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/creating.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/diagnosing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/editing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/editor.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/experimenting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/exporting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/externing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/feedingback.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/fitting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/gui.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/headering.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/helping.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/importing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/internal.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/invocation.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/keyboard.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/keywords.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/lazyio.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/locking.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/menu.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/monitoring.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/morphing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/movie.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/moving.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/mpeg_encode.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/parser.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/parsing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/preset.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/pymolhttpd.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/querying.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/rpc.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/save_shortcut.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/selecting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/selector.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/seqalign.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/setting.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/shortcut.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/shortcut_dict.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/shortcut_manager.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/util.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/vfont.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/viewing.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/wizarding.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/xray.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/xwin.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/povray.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol creating /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol2 copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol2/__init__.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol2 copying /build/reproducible-path/pymol-3.1.0+dfsg/.pybuild/cpython3_3.13_pymol/build/pymol2/cmd2.py -> /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol2 byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/web/examples/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/web/examples/justhttpd.py to justhttpd.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bmin/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bmin/commands.py to commands.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bmin/realtime.py to realtime.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bmin/state.py to state.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bmin/util.py to util.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/champ/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/champ/amber99.py to amber99.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/champ/assign.py to assign.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/fast/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/fragments/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/mmtf/io.py to io.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/tinker/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/tinker/amber.py to amber.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/tinker/keyword.py to keyword.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/tinker/realtime.py to realtime.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/tinker/state.py to state.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/arc.py to arc.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bond_amber.py to bond_amber.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/bonds.py to bonds.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/brick.py to brick.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/cc1.py to cc1.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/charge.py to charge.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/cif.py to cif.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/cpv.py to cpv.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/dictdb.py to dictdb.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/gamess1.py to gamess1.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/gms.py to gms.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/hetatm.py to hetatm.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/io.py to io.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/lst.py to lst.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/mae.py to mae.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/map.py to map.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/mass.py to mass.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/mmd.py to mmd.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/models.py to models.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/mol.py to mol.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/mol2.py to mol2.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/neighbor.py to neighbor.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/pdb.py to pdb.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/pkl.py to pkl.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/place.py to place.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/protein.py to protein.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/protein_amber.py to protein_amber.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/protein_residues.py to protein_residues.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/sdf.py to sdf.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/solvate.py to solvate.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/water_amber.py to water_amber.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/water_residues.py to water_residues.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/chempy/xyz.py to xyz.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/syntax/python.py to python.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/builder.py to builder.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/scene_bin_gui.py to scene_bin_gui.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_qt/volume.py to volume.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/Demo.py to Demo.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/Setting.py to Setting.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pmg_tk/volume.py to volume.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/Qt/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/Qt/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/plugins/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/plugins/installation.py to installation.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/plugins/managergui.py to managergui.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/plugins/repository.py to repository.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/annotation.py to annotation.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/appearance.py to appearance.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/box.py to box.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/charge.py to charge.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/cleanup.py to cleanup.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/command.py to command.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/demo.py to demo.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/density.py to density.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/distance.py to distance.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/dragging.py to dragging.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/filter.py to filter.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/label.py to label.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/measurement.py to measurement.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/message.py to message.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/openvr.py to openvr.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/renaming.py to renaming.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/security.py to security.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizard/toggle.py to toggle.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/__main__.py to __main__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/_gui.py to _gui.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/api.py to api.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/callback.py to callback.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/cgo.py to cgo.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/cgobuilder.py to cgobuilder.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/checking.py to checking.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/cmd.py to cmd.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/colorprinting.py to colorprinting.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/colorramping.py to colorramping.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/commanding.py to commanding.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/completing.py to completing.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/computing.py to computing.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/constants.py to constants.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/constants_palette.py to constants_palette.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/controlling.py to controlling.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/creating.py to creating.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/diagnosing.py to diagnosing.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/editing.py to editing.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/editor.py to editor.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/experimenting.py to experimenting.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/exporting.py to exporting.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/externing.py to externing.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/feedingback.py to feedingback.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/fitting.py to fitting.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/gui.py to gui.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/headering.py to headering.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/helping.py to helping.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/importing.py to importing.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/internal.py to internal.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/invocation.py to invocation.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/keyboard.py to keyboard.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/keywords.py to keywords.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/lazyio.py to lazyio.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/locking.py to locking.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/menu.py to menu.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/monitoring.py to monitoring.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/morphing.py to morphing.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/movie.py to movie.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/moving.py to moving.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/parser.py to parser.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/parsing.py to parsing.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/preset.py to preset.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/querying.py to querying.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/rpc.py to rpc.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/save_shortcut.py to save_shortcut.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/selecting.py to selecting.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/selector.py to selector.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/seqalign.py to seqalign.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/setting.py to setting.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/shortcut.py to shortcut.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/util.py to util.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/vfont.py to vfont.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/viewing.py to viewing.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/wizarding.py to wizarding.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/xray.py to xray.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/xwin.py to xwin.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/povray.py to povray.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol2/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol2/cmd2.py to cmd2.cpython-313.pyc running install_egg_info Copying modules/pymol.egg-info to /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/lib/python3.13/dist-packages/pymol-3.1.0.egg-info Skipping SOURCES.txt running install_scripts Installing pymol script to /build/reproducible-path/pymol-3.1.0+dfsg/debian/python3-pymol/usr/bin debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/pymol-3.1.0+dfsg' dh_numpy3 Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. dh_install rm -rf debian/python*pymol/usr/bin make[1]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/pymol-3.1.0+dfsg' pdflatex -output-directory debian -jobname pymol-ref-card debian/pymolRef.tex This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./debian/pymolRef.tex LaTeX2e <2025-06-01> patch level 1 L3 programming layer <2025-07-19> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2025/01/22 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file pymol-ref-card.aux. Underfull \hbox (badness 10000) in paragraph at lines 78--79 [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (debian/pymol-ref-card.aux) kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm0900 mkdir: cannot create directory '././nonexistent': Permission denied mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm0900 This is METAFONT, Version 2.71828182 (TeX Live 2025/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm0900.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf Ok [100] [109] [98] [99] [108]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf Ok [188] [189] [190]) ) ) ) (some charht values had to be adjusted by as much as 0.06744pt) Font metrics written on tcrm0900.tfm. Output written on tcrm0900.600gf (128 characters, 21392 bytes). Transcript written on tcrm0900.log. mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/tcrm0900.600pk: successfully generated. ) (see the transcript file for additional information) Output written on debian/pymol-ref-card.pdf (2 pages, 107826 bytes). Transcript written on debian/pymol-ref-card.log. dh_install install -m 755 debian/pymol.launch debian/pymol/usr/bin/pymol make[1]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_installmime -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/pymol-3.1.0+dfsg' dh_compress -Xpdb make[1]: Leaving directory '/build/reproducible-path/pymol-3.1.0+dfsg' dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/python3-pymol/usr/lib/python3/dist-packages/pymol/_cmd.cpython-313-aarch64-linux-gnu.so: DWARF compression not beneficial - old size 33591939 new size 33752704 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: debian/python3-pymol/usr/lib/python3/dist-packages/chempy/champ/_champ.cpython-313-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyCapsule_New: it's probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-pymol/usr/lib/python3/dist-packages/pymol/_cmd.cpython-313-aarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it's probably a plugin dpkg-shlibdeps: warning: 102 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package pymol: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pymol' in '../python3-pymol_3.1.0+dfsg-1_arm64.deb'. dpkg-deb: building package 'pymol-data' in '../pymol-data_3.1.0+dfsg-1_all.deb'. dpkg-deb: building package 'python3-pymol-dbgsym' in '../python3-pymol-dbgsym_3.1.0+dfsg-1_arm64.deb'. dpkg-deb: building package 'pymol' in '../pymol_3.1.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../pymol_3.1.0+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../pymol_3.1.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1496030 and its subdirectories I: Current time: Sat Oct 17 23:00:36 -12 2026 I: pbuilder-time-stamp: 1792321236 Mon Sep 15 04:37:40 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Mon Sep 15 04:37:40 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Mon Sep 15 04:42:10 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Mon Sep 15 04:42:10 UTC 2025 I: pymol_3.1.0+dfsg-1_arm64.changes: Format: 1.8 Date: Mon, 17 Mar 2025 09:37:33 +0100 Source: pymol Binary: pymol pymol-data python3-pymol python3-pymol-dbgsym Architecture: all arm64 Version: 3.1.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Michael Banck Description: pymol - Molecular Graphics System pymol-data - data files for PyMOL python3-pymol - Molecular Graphics System (Python 3 modules) Changes: pymol (3.1.0+dfsg-1) unstable; urgency=medium . * New upstream release. * debian/patches/27_fix_pymol_path_in_setup.patch: Refreshed. * debian/patches/28_no_data_install_in_python_path.patch: Likewise. * debian/patches/32_fix_spelling_lintian_warnings.patch: Likewise. * debian/control (Build-Depends): Added cmake. * debian/rules: Force PYBUILD_SYSTEM to distutils in order to avoid pybuild directly calling cmake. Checksums-Sha1: c4d0712316734f493b8f3ee6f92a0d69d1d07cd6 1430060 pymol-data_3.1.0+dfsg-1_all.deb bebbf36849ae074e2fa770dc737387114dc6cc02 180260 pymol_3.1.0+dfsg-1_all.deb d4a9f60db26f74ae7625f6857983875f23bd996f 14077 pymol_3.1.0+dfsg-1_arm64.buildinfo f27efea0b49921f77b0a2cf26acee2fbad8236c4 20709096 python3-pymol-dbgsym_3.1.0+dfsg-1_arm64.deb e90a282bdb39a8aa7d8730280db61dd828857726 3657052 python3-pymol_3.1.0+dfsg-1_arm64.deb Checksums-Sha256: 9705b7ece59206b35bcb053174c36abb24c7240e552e2a6db799c55cfd91e4d2 1430060 pymol-data_3.1.0+dfsg-1_all.deb 6a363610264749da5fbc15c067a29060b42d150a286b80c42bf254551898e75a 180260 pymol_3.1.0+dfsg-1_all.deb 501eae352140c4a156f1e5266c9f0929af11a16cba4c1abe81172d9cff1e3e4a 14077 pymol_3.1.0+dfsg-1_arm64.buildinfo 51f47a13a37a4ddf65f850ebea2ce2f8042b5b0ed167dc1d1e20f5caa896e6f6 20709096 python3-pymol-dbgsym_3.1.0+dfsg-1_arm64.deb b39243a918b0d8d1c91893ba77206c1f705d4083a13f914de4a349f5d4763154 3657052 python3-pymol_3.1.0+dfsg-1_arm64.deb Files: 4b036b74296303ec34c5c550ec9602ed 1430060 science optional pymol-data_3.1.0+dfsg-1_all.deb f5902ae85eacd1ffba59ab1258c4b210 180260 science optional pymol_3.1.0+dfsg-1_all.deb 0ab517da04169eb95d0d85ca7b7c0b22 14077 science optional pymol_3.1.0+dfsg-1_arm64.buildinfo a0ec38143425b446c9ba623ee6e4bc7f 20709096 debug optional python3-pymol-dbgsym_3.1.0+dfsg-1_arm64.deb 2a43315a71a593f311f63a765ceceaf9 3657052 python optional python3-pymol_3.1.0+dfsg-1_arm64.deb Mon Sep 15 04:42:11 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_5-121244.service; invocation ID: e590cab9cc104306813c736d2496bf80 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.fdMrjlQA/pymol_3.1.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.fdMrjlQA/pymol_3.1.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.fdMrjlQA/pymol_3.1.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.fdMrjlQA/b1/pymol_3.1.0+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.fdMrjlQA/b2/pymol_3.1.0+dfsg-1_arm64.changes ## close_archive (total time: 0.000s) 0.000s 22 calls diffoscope.comparators.xz.XzContainer 0.000s 10 calls diffoscope.comparators.deb.DebContainer 0.000s 16 calls diffoscope.comparators.tar.TarContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 359.522s) 184.846s 1003 calls readelf 142.840s 117 calls diff 27.707s 165 calls objdump 1.861s 2 calls objcopy 1.327s 22 calls xz 0.927s 22 calls strings 0.006s 3 calls cmp 0.006s 3 calls cmp (external) 0.001s 24 calls cmp (internal) ## compare_files (cumulative) (total time: 1393.072s) 262.453s 1 call abc.DotChangesFile 262.421s 2 calls abc.DebFile 262.321s 4 calls abc.XzFile 261.402s 2 calls abc.DebDataTarFile 260.024s 2 calls abc.ElfFile 76.746s 8 calls diffoscope.comparators.elf.ElfCodeSection 6.379s 35 calls diffoscope.comparators.elf.ElfSection 1.248s 3 calls diffoscope.comparators.elf.ElfStringSection 0.052s 2 calls abc.TarFile 0.010s 2 calls abc.Md5sumsFile 0.009s 1 call abc.TextFile 0.007s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## container_extract (total time: 1.658s) 1.328s 22 calls diffoscope.comparators.xz.XzContainer 0.196s 452 calls diffoscope.comparators.deb.DebTarContainer 0.124s 26 calls diffoscope.comparators.deb.DebContainer 0.010s 24 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.084s) 0.084s 12 calls linediff ## has_same_content_as (total time: 0.009s) 0.004s 4 calls abc.DebFile 0.003s 2 calls abc.DebDataTarFile 0.001s 6 calls abc.TextFile 0.000s 4 calls abc.Md5sumsFile 0.000s 2 calls abc.ElfFile 0.000s 4 calls abc.XzFile 0.000s 2 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 2 calls abc.TarFile 0.000s 35 calls diffoscope.comparators.elf.ElfSection 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 1 call abc.DotChangesFile 0.000s 8 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 3 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 262.984s) 262.975s 2 calls outputs 0.009s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 22 calls diffoscope.comparators.xz.XzContainer 0.000s 16 calls diffoscope.comparators.tar.TarContainer 0.000s 12 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.127s) 0.127s 1 call html 0.000s 1 call text 0.000s 1 call json ## recognizes (total time: 0.974s) 0.509s 1036 calls diffoscope.comparators.utils.archive.ArchiveMember 0.248s 2096 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.168s 12 calls diffoscope.comparators.binary.FilesystemFile 0.049s 432 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.504s) 0.504s 74 calls specialize Finished with result: success Main processes terminated with: code=exited, status=1/FAILURE Service runtime: 4min 23.271s CPU time consumed: 5min 24.973s Memory peak: 4.7G (swap: 0B) Mon Sep 15 04:46:34 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Mon Sep 15 04:46:34 UTC 2025 E: pymol failed to build reproducibly in forky on arm64. Mon Sep 15 04:46:35 UTC 2025 I: Removing signed pymol_3.1.0+dfsg-1_arm64.buildinfo.asc files: removed './b1/pymol_3.1.0+dfsg-1_arm64.buildinfo.asc' removed './b2/pymol_3.1.0+dfsg-1_arm64.buildinfo.asc'