Mon Oct 20 04:30:15 UTC 2025 I: starting to build python-biom-format/forky/arm64 on jenkins on '2025-10-20 04:30' Mon Oct 20 04:30:15 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_2/117421/console.log Mon Oct 20 04:30:15 UTC 2025 I: Downloading source for forky/python-biom-format=2.1.16-1 --2025-10-20 04:30:15-- http://deb.debian.org/debian/pool/main/p/python-biom-format/python-biom-format_2.1.16-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2628 (2.6K) [text/prs.lines.tag] Saving to: ‘python-biom-format_2.1.16-1.dsc’ 0K .. 100% 274M=0s 2025-10-20 04:30:15 (274 MB/s) - ‘python-biom-format_2.1.16-1.dsc’ saved [2628/2628] Mon Oct 20 04:30:15 UTC 2025 I: python-biom-format_2.1.16-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-biom-format Binary: python3-biom-format, python-biom-format-doc Architecture: any all Version: 2.1.16-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://biom-format.org/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-biom-format Vcs-Git: https://salsa.debian.org/med-team/python-biom-format.git Testsuite: autopkgtest, autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-h5py, python3-numpy, python3-numpydoc, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest , python3-pytest-cov Package-List: python-biom-format-doc deb doc optional arch=all python3-biom-format deb python optional arch=any Checksums-Sha1: b417c11e08e337880156bdda88ab5ca6c9466e90 11896065 python-biom-format_2.1.16.orig.tar.gz d04bfbe827450a808817ffdb34634bd24ce0bc55 11564 python-biom-format_2.1.16-1.debian.tar.xz Checksums-Sha256: 17e135c4ed7e003f7b35e7f7cec8ce02c1c22fd06ff6a404887ea1ef4205693a 11896065 python-biom-format_2.1.16.orig.tar.gz 1181693232db732053e32be2b5105227cd5bd755f272a8accab220e2bbb1d091 11564 python-biom-format_2.1.16-1.debian.tar.xz Files: b833addd927258a146ba2444f61529eb 11896065 python-biom-format_2.1.16.orig.tar.gz 20338d1c1fdcb1830732f53a66673d4d 11564 python-biom-format_2.1.16-1.debian.tar.xz Dgit: 3e4793e9bfdb150e61ff2a7bbbfe29510f8824f6 debian archive/debian/2.1.16-1 https://git.dgit.debian.org/python-biom-format -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmZU8IIUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqxCw//UhuipGyQyNUM7ayp49puLAZDmuz1 X4mb22LAN9JV44EZbPWqTq1nscmy0Kp3ZkXx6OaddxKFphgf4sQBYNR2/k3ZxDz1 wl6ZVphbEQtbp08lk16t+1X3Xc7MCiMjlMbGRaG9YTuGsFTu4U6DiNhDM/TaJ6Pu 7A46KNLVSO/4PIFpx60odEf67F8Vjm6go1zChZd8VPvLyQYEFjOLduczWht4eMJE 0+6UofUt+mJgNF8L0bLBCDiFl8mWu9xKJAkTaOksQO50oKqmHIgQisFFytcZSD+4 r3IYjYKbFGKeuWutPOBsMA6IHEY2B6yoHIT1ljXXZ9pYmrk5bymVnS6w1oKAp6hV bbhNpFs4oAOAuNd3hugUEHdOXBXSo2vm87iUnQ0fzGM8D8GwcIkGLMwNuE7kMKon xuYNsGkZ5Hr2pLqTlTnEyeTZopDPU9bTXXunkhutg4X/aAeZFd0gjWArO6Jv6Tov Yw3w7s3ynIK3fbXYCJHXdYy+5y5zhuvEaytcAl6WfKVzACjRGkyIuQ65YJCbSVMQ 3JExOxhBTotB9opVicxqjqoHPsRfSt7xDqndxfSI98ou88TN9Pf09DXOBYCb53Wn jpAhk7GofTVclqsH1+e5ce+dJOxIyV/rv0Hwwan/zSITCnv8S5W+BKjUU65TYVYB gjLu3URD6cVN+RQ= =V5NQ -----END PGP SIGNATURE----- Mon Oct 20 04:30:15 UTC 2025 I: Checking whether the package is not for us Mon Oct 20 04:30:15 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Mon Oct 20 04:30:15 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Mon Oct 20 04:32:06 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 21 22:53:16 -12 2026 I: pbuilder-time-stamp: 1795344796 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-biom-format_2.1.16-1.dsc] I: copying [./python-biom-format_2.1.16.orig.tar.gz] I: copying [./python-biom-format_2.1.16-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-biom-format_2.1.16-1.dsc: no acceptable signature found dpkg-source: info: extracting python-biom-format in python-biom-format-2.1.16 dpkg-source: info: unpacking python-biom-format_2.1.16.orig.tar.gz dpkg-source: info: unpacking python-biom-format_2.1.16-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ignore_local_dist-packages.patch dpkg-source: info: applying no-web-adds.patch dpkg-source: info: applying fix_future_import.patch dpkg-source: info: applying sphinx_1.6.patch dpkg-source: info: applying posix_shell.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3542052/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='c2d7df187e224e7289da00c0d6248dcc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3542052' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7ZJBU3QP/pbuilderrc_WTsG --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7ZJBU3QP/b1 --logfile b1/build.log python-biom-format_2.1.16-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3542052/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-h5py, python3-numpy, python3-numpydoc, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on bash-completion; however: Package bash-completion is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpydoc; however: Package python3-numpydoc is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libabsl20240722{a} libaec0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-hl-310{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-sphinxdoc{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblocale-gettext-perl{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.8{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsvtav1enc2{a} libsz2{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyuv0{a} libzopfli1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-docutils{a} python3-fonttools{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-numpydoc{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-pytz{a} python3-requests{a} python3-roman-numerals{a} python3-scipy{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufolib2{a} python3-urllib3{a} python3-zipp{a} python3-zopfli{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-tables python3-yaml shared-mime-info wget xdg-user-dirs 0 packages upgraded, 222 newly installed, 0 to remove and 0 not upgraded. Need to get 139 MB of archives. After unpacking 576 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.8-1 [858 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.8-1 [2062 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 media-types all 14.0.0 [30.8 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.8-1 [1899 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.8-1 [765 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1.2 [138 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-4 [371 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 python3-numpy arm64 1:2.2.4+ds-1.2 [3620 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 bash-completion all 1:2.16.0-7 [319 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 openssl arm64 3.5.4-1 [1457 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 ca-certificates all 20250419 [162 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-1 [94.3 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [982 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 x11-common all 1:7.7+25 [217 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libtk8.6 arm64 8.6.17-1 [740 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [537 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 blt arm64 2.5.3+dfsg-8 [5984 B] Get: 60 http://deb.debian.org/debian forky/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 67 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 xml-core all 0.19 [20.1 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 docutils-common all 0.22.2+dfsg-2 [128 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 fonts-lyx all 2.4.4-2 [190 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libabsl20240722 arm64 20240722.0-4 [452 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libaec0 arm64 1.1.4-2 [22.6 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 libaom3 arm64 3.13.1-1 [1631 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 libdav1d7 arm64 1.5.1-1 [252 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libgav1-1 arm64 0.19.0-3+b1 [491 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 librav1e0.8 arm64 0.8.1-5 [688 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libsvtav1enc2 arm64 2.3.0+dfsg-1 [1558 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 libyuv0 arm64 0.0.1919.20250919-1 [138 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libavif16 arm64 1.3.0-1+b1 [127 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 97 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 98 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 99 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 100 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 101 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 102 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 103 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 104 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 105 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 106 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 107 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 108 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 109 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 110 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 111 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.16.0-4 [368 kB] Get: 112 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 113 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.3-1 [150 kB] Get: 114 http://deb.debian.org/debian forky/main arm64 libfribidi0 arm64 1.0.16-3 [26.5 kB] Get: 115 http://deb.debian.org/debian forky/main arm64 libgpg-error0 arm64 1.56-2 [84.0 kB] Get: 116 http://deb.debian.org/debian forky/main arm64 libgcrypt20 arm64 1.11.2-2 [772 kB] Get: 117 http://deb.debian.org/debian forky/main arm64 libglib2.0-0t64 arm64 2.86.0-5 [1434 kB] Get: 118 http://deb.debian.org/debian forky/main arm64 libgraphite2-3 arm64 1.3.14-11 [70.8 kB] Get: 119 http://deb.debian.org/debian forky/main arm64 libharfbuzz0b arm64 12.1.0-1 [486 kB] Get: 120 http://deb.debian.org/debian forky/main arm64 libsz2 arm64 1.1.4-2 [8072 B] Get: 121 http://deb.debian.org/debian forky/main arm64 libhdf5-310 arm64 1.14.5+repack-4 [1177 kB] Get: 122 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [68.4 kB] Get: 123 http://deb.debian.org/debian forky/main arm64 libimagequant0 arm64 4.4.0-3 [216 kB] Get: 124 http://deb.debian.org/debian forky/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 125 http://deb.debian.org/debian forky/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 126 http://deb.debian.org/debian forky/main arm64 libjs-jquery-hotkeys all 0.2.0-1 [12.6 kB] Get: 127 http://deb.debian.org/debian forky/main arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 128 http://deb.debian.org/debian forky/main arm64 libjs-jquery-metadata all 12-4 [6532 B] Get: 129 http://deb.debian.org/debian forky/main arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [184 kB] Get: 130 http://deb.debian.org/debian forky/main arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 131 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-7 [27.6 kB] Get: 132 http://deb.debian.org/debian forky/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 133 http://deb.debian.org/debian forky/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 134 http://deb.debian.org/debian forky/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 135 http://deb.debian.org/debian forky/main arm64 liblzf1 arm64 3.6-4+b3 [10.1 kB] Get: 136 http://deb.debian.org/debian forky/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [189 kB] Get: 137 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.8-1 [2057 kB] Get: 138 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 139 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.8-1 [5020 kB] Get: 140 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 141 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.7-1 [1068 B] Get: 142 http://deb.debian.org/debian forky/main arm64 libqhull-r8.0 arm64 2020.2-7 [229 kB] Get: 143 http://deb.debian.org/debian forky/main arm64 libraqm0 arm64 0.10.3-1 [13.6 kB] Get: 144 http://deb.debian.org/debian forky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 145 http://deb.debian.org/debian forky/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 146 http://deb.debian.org/debian forky/main arm64 libtiff6 arm64 4.7.1-1 [334 kB] Get: 147 http://deb.debian.org/debian forky/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 148 http://deb.debian.org/debian forky/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 149 http://deb.debian.org/debian forky/main arm64 libxslt1.1 arm64 1.1.43-0.2 [145 kB] Get: 150 http://deb.debian.org/debian forky/main arm64 libzopfli1 arm64 1.0.3-3 [95.2 kB] Get: 151 http://deb.debian.org/debian forky/main arm64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 152 http://deb.debian.org/debian forky/main arm64 python-matplotlib-data all 3.10.1+dfsg1-5 [2737 kB] Get: 153 http://deb.debian.org/debian forky/main arm64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 154 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 155 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.8-1 [505 kB] Get: 156 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 157 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.7-1 [1068 B] Get: 158 http://deb.debian.org/debian forky/main arm64 python3-attr all 25.3.0-1 [69.5 kB] Get: 159 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 160 http://deb.debian.org/debian forky/main arm64 python3-babel all 2.17.0-1 [117 kB] Get: 161 http://deb.debian.org/debian forky/main arm64 python3-brotli arm64 1.1.0-2+b7 [300 kB] Get: 162 http://deb.debian.org/debian forky/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 163 http://deb.debian.org/debian forky/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 164 http://deb.debian.org/debian forky/main arm64 python3-charset-normalizer arm64 3.4.3-1 [123 kB] Get: 165 http://deb.debian.org/debian forky/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 166 http://deb.debian.org/debian forky/main arm64 python3-contourpy arm64 1.3.1-2 [191 kB] Get: 167 http://deb.debian.org/debian forky/main arm64 python3-coverage arm64 7.8.2+dfsg1-1 [182 kB] Get: 168 http://deb.debian.org/debian forky/main arm64 python3-cycler all 0.12.1-2 [9616 B] Get: 169 http://deb.debian.org/debian forky/main arm64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 170 http://deb.debian.org/debian forky/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 171 http://deb.debian.org/debian forky/main arm64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 172 http://deb.debian.org/debian forky/main arm64 python3-roman-numerals all 3.1.0-2 [8740 B] Get: 173 http://deb.debian.org/debian forky/main arm64 python3-docutils all 0.22.2+dfsg-2 [432 kB] Get: 174 http://deb.debian.org/debian forky/main arm64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get: 175 http://deb.debian.org/debian forky/main arm64 python3-fs all 2.4.16-8 [95.2 kB] Get: 176 http://deb.debian.org/debian forky/main arm64 python3-lxml arm64 6.0.2-1 [1260 kB] Get: 177 http://deb.debian.org/debian forky/main arm64 python3-lz4 arm64 4.4.4+dfsg-3 [25.5 kB] Get: 178 http://deb.debian.org/debian forky/main arm64 python3-scipy arm64 1.15.3-1.1 [15.1 MB] Get: 179 http://deb.debian.org/debian forky/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 180 http://deb.debian.org/debian forky/main arm64 python3-sympy all 1.14.0-2 [4228 kB] Get: 181 http://deb.debian.org/debian forky/main arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 182 http://deb.debian.org/debian forky/main arm64 python3-zopfli arm64 0.2.3.post1-1 [10.2 kB] Get: 183 http://deb.debian.org/debian forky/main arm64 unicode-data all 16.0.0-1 [9197 kB] Get: 184 http://deb.debian.org/debian forky/main arm64 python3-fonttools arm64 4.57.0-2 [1368 kB] Get: 185 http://deb.debian.org/debian forky/main arm64 python3-h5py-serial arm64 3.14.0-3 [972 kB] Get: 186 http://deb.debian.org/debian forky/main arm64 python3-h5py all 3.14.0-3 [18.3 kB] Get: 187 http://deb.debian.org/debian forky/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 188 http://deb.debian.org/debian forky/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 189 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 190 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 191 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 192 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 193 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 194 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 195 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 196 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 197 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 198 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 199 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 200 http://deb.debian.org/debian forky/main arm64 python3-markupsafe arm64 3.0.2-2 [13.5 kB] Get: 201 http://deb.debian.org/debian forky/main arm64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 202 http://deb.debian.org/debian forky/main arm64 python3-kiwisolver arm64 1.4.7-3+b1 [57.8 kB] Get: 203 http://deb.debian.org/debian forky/main arm64 python3-pil arm64 11.3.0-1 [507 kB] Get: 204 http://deb.debian.org/debian forky/main arm64 python3.13-tk arm64 3.13.8-1 [106 kB] Get: 205 http://deb.debian.org/debian forky/main arm64 python3-tk arm64 3.13.5-1 [9604 B] Get: 206 http://deb.debian.org/debian forky/main arm64 python3-pil.imagetk arm64 11.3.0-1 [81.3 kB] Get: 207 http://deb.debian.org/debian forky/main arm64 python3-pyparsing all 3.1.3-1 [148 kB] Get: 208 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 209 http://deb.debian.org/debian forky/main arm64 python3-matplotlib arm64 3.10.1+dfsg1-5 [23.7 MB] Get: 210 http://deb.debian.org/debian forky/main arm64 sphinx-common all 8.2.3-7 [619 kB] Get: 211 http://deb.debian.org/debian forky/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 212 http://deb.debian.org/debian forky/main arm64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 213 http://deb.debian.org/debian forky/main arm64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get: 214 http://deb.debian.org/debian forky/main arm64 python3-snowballstemmer all 3.0.1-1 [63.5 kB] Get: 215 http://deb.debian.org/debian forky/main arm64 python3-sphinx all 8.2.3-7 [477 kB] Get: 216 http://deb.debian.org/debian forky/main arm64 python3-numpydoc all 1.9.0-1 [52.3 kB] Get: 217 http://deb.debian.org/debian forky/main arm64 python3-pytz all 2025.2-4 [31.8 kB] Get: 218 http://deb.debian.org/debian forky/main arm64 python3-pandas-lib arm64 2.3.3+dfsg-1 [3653 kB] Get: 219 http://deb.debian.org/debian forky/main arm64 python3-pandas all 2.3.3+dfsg-1 [2934 kB] Get: 220 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 221 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.4.2-1 [266 kB] Get: 222 http://deb.debian.org/debian forky/main arm64 python3-pytest-cov all 5.0.0-1 [26.8 kB] Fetched 139 MB in 1s (249 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... 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Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libglib2.0-0t64:arm64 (2.86.0-5) ... No schema files found: doing nothing. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libjs-jquery-metadata (12-4) ... Setting up sphinx-common (8.2.3-7) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:arm64 (12.1.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:arm64 (2.15.0-2.4) ... Setting up libpython3.13-stdlib:arm64 (3.13.8-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libpython3.13:arm64 (3.13.8-1) ... Setting up libgnutls30t64:arm64 (3.8.10-2) ... Setting up libxft2:arm64 (2.3.6-1+b4) ... Setting up python3.13 (3.13.8-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.17-1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-click (8.2.0+0.really.8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (3.0.2-2) ... Setting up python3.13-tk (3.13.8-1) ... Setting up python3-platformdirs (4.4.0-1) ... Setting up python3-zopfli (0.2.3.post1-1) ... Setting up python3-fs (2.4.16-8) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.1.3-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up python3-snowballstemmer (3.0.1-1) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libraqm0:arm64 (0.10.3-1) ... Setting up libpython3.13-dev:arm64 (3.13.8-1) ... Setting up python3-cycler (0.12.1-2) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up python3-idna (3.10-1) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-lxml:arm64 (6.0.2-1) ... Setting up python3-roman-numerals (3.1.0-2) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.14.0-2) ... Setting up python3-attr (25.3.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up libpython3-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:arm64 (8.16.0-4) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.4.4+dfsg-3) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3.13-dev (3.13.8-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up blt (2.5.3+dfsg-8) ... Setting up python3-pandas-lib:arm64 (2.3.3+dfsg-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up python3-coverage (7.8.2+dfsg1-1) ... Setting up python3-tk:arm64 (3.13.5-1) ... Setting up debhelper (13.28) ... Setting up python3-pytz (2025.2-4) ... Setting up python3-pytest-cov (5.0.0-1) ... Setting up python3-pil:arm64 (11.3.0-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-pandas (2.3.3+dfsg-1) ... Setting up python3-pil.imagetk:arm64 (11.3.0-1) ... Setting up libpython3-all-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up libhdf5-310:arm64 (1.14.5+repack-4) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up libhdf5-hl-310:arm64 (1.14.5+repack-4) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-h5py-serial (3.14.0-3) ... Setting up python3-h5py (3.14.0-3) ... Setting up python3-fonttools (4.57.0-2) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up python3-matplotlib (3.10.1+dfsg1-5) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.22.2+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.22.2+dfsg-2) ... Setting up python3-sphinx (8.2.3-7) ... Setting up python3-numpydoc (1.9.0-1) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-biom-format-2.1.16/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-biom-format_2.1.16-1_source.changes dpkg-buildpackage: info: source package python-biom-format dpkg-buildpackage: info: source version 2.1.16-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with bash-completion,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.13 I: pybuild base:311: python3.13 setup.py clean /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with bash-completion,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.13 I: pybuild base:311: python3.13 setup.py config /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' # arch USE_CYTHON=true dh_auto_build pybuild --build -i python{version} -p 3.13 I: pybuild base:311: /usr/bin/python3 setup.py build /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli running egg_info creating biom_format.egg-info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt writing manifest file 'biom_format.egg-info/SOURCES.txt' dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets copying biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets copying biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data running build_ext building 'biom._filter' extension creating build/temp.linux-aarch64-cpython-313/biom aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c biom/_filter.c -o build/temp.linux-aarch64-cpython-313/biom/_filter.o In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from biom/_filter.c:1249: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/biom/_filter.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'biom._transform' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c biom/_transform.c -o build/temp.linux-aarch64-cpython-313/biom/_transform.o In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from biom/_transform.c:1249: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/biom/_transform.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'biom._subsample' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c biom/_subsample.c -o build/temp.linux-aarch64-cpython-313/biom/_subsample.o In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from biom/_subsample.c:1249: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/biom/_subsample.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. # indep: PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html Running Sphinx v8.2.3 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst WARNING: Failed to import biom.table. Possible hints: * KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' WARNING: Failed to import biom. Possible hints: * KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 12 source files that are out of date updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 17%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 42%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 67%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 92%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n', ' File "/usr/lib/python3.13/importlib/__init__.py", line 88, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 1027, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/build/reproducible-path/python-biom-format-2.1.16/biom/__init__.py", line 51, in \n from .table import Table\n', ' File "/build/reproducible-path/python-biom-format-2.1.16/biom/table.py", line 196, in \n from ._filter import _filter\n', "ModuleNotFoundError: No module named 'biom._filter'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n', ' File "/usr/lib/python3.13/importlib/__init__.py", line 88, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 1027, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/build/reproducible-path/python-biom-format-2.1.16/biom/__init__.py", line 51, in \n from .table import Table\n', ' File "/build/reproducible-path/python-biom-format-2.1.16/biom/table.py", line 196, in \n from ._filter import _filter\n', "ModuleNotFoundError: No module named 'biom._filter'\n"] [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/haiku.css copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 8%] BIOM_LICENSE writing output... [ 17%] documentation/adding_metadata writing output... [ 25%] documentation/biom_conversion writing output... [ 33%] documentation/biom_format writing output... [ 42%] documentation/format_versions/biom-1.0 writing output... [ 50%] documentation/format_versions/biom-2.0 writing output... [ 58%] documentation/format_versions/biom-2.1 writing output... [ 67%] documentation/index writing output... [ 75%] documentation/quick_usage_examples writing output... [ 83%] documentation/summarizing_biom_tables writing output... [ 92%] documentation/table_objects writing output... [100%] index /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated [toc.no_title] /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated [toc.no_title] /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated [toc.no_title] /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated [toc.no_title] generating indices... done writing additional pages... search done copying images... [100%] _static/biom-format.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 8 warnings. The HTML pages are in build/html. PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man Running Sphinx v8.2.3 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst WARNING: Failed to import biom.table. Possible hints: * ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' WARNING: Failed to import biom. Possible hints: * ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' building [mo]: targets for 0 po files that are out of date writing output... building [man]: all manpages updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 17%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 42%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 67%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 92%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n', ' File "/usr/lib/python3.13/importlib/__init__.py", line 88, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 1027, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/build/reproducible-path/python-biom-format-2.1.16/biom/__init__.py", line 51, in \n from .table import Table\n', ' File "/build/reproducible-path/python-biom-format-2.1.16/biom/table.py", line 196, in \n from ._filter import _filter\n', "ModuleNotFoundError: No module named 'biom._filter'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n', ' File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n', ' File "/usr/lib/python3.13/importlib/__init__.py", line 88, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 1027, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/build/reproducible-path/python-biom-format-2.1.16/biom/__init__.py", line 51, in \n from .table import Table\n', ' File "/build/reproducible-path/python-biom-format-2.1.16/biom/table.py", line 196, in \n from ._filter import _filter\n', "ModuleNotFoundError: No module named 'biom._filter'\n"] [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying assets: done writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } done build succeeded, 4 warnings. The manual pages are in build/man. make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.13 I: pybuild pybuild:308: cp -r /build/reproducible-path/python-biom-format-2.1.16/examples /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build I: pybuild base:311: cd /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.8, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build configfile: pytest.ini testpaths: biom plugins: cov-5.0.0, typeguard-4.4.4 collected 384 items biom/tests/test_cli/test_add_metadata.py .... [ 1%] biom/tests/test_cli/test_show_install_info.py . [ 1%] biom/tests/test_cli/test_subset_table.py ..... [ 2%] biom/tests/test_cli/test_summarize_table.py .. [ 3%] biom/tests/test_cli/test_table_converter.py ...... [ 4%] biom/tests/test_cli/test_table_normalizer.py . [ 4%] biom/tests/test_cli/test_uc_processor.py ...... [ 6%] biom/tests/test_cli/test_validate_table.py ....................... [ 12%] biom/tests/test_err.py ..................... [ 17%] biom/tests/test_parse.py ........................... [ 25%] biom/tests/test_table.py ............................................... [ 37%] ..ssss.................................................................. [ 55%] ......sss............................................................... [ 74%] ........................................................................ [ 93%] ..... [ 94%] biom/tests/test_util.py .................... [100%] =============================== warnings summary =============================== biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5 biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5 biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset biom/tests/test_table.py::TableTests::test_from_hdf5_subset_error biom/tests/test_table.py::TableTests::test_from_hdf5_subset_error /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/table.py:4237: DeprecationWarning: `in1d` is deprecated. Use `np.isin` instead. idx = np.in1d(source_ids, desired_ids) biom/tests/test_table.py::SupportTests::test_remove_empty_both biom/tests/test_table.py::SupportTests::test_remove_empty_obs biom/tests/test_table.py::SupportTests::test_remove_empty_sample /usr/lib/python3/dist-packages/scipy/sparse/_index.py:210: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_arrayXarray(i, j, x) biom/tests/test_table.py::TableTests::test_nnz_issue_727 /usr/lib/python3/dist-packages/scipy/sparse/_index.py:168: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_intXint(row, col, x.flat[0]) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 377 passed, 7 skipped, 10 warnings in 4.33s ================== rm -fr -- /tmp/dh-xdg-rundir-VVKyTGmd create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars rm -fr -- debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/tmp/ debian/.debhelper/generated/python-biom-format-doc/ debian/python-biom-format-doc/ rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_auto_install install -m0755 -d /build/reproducible-path/python-biom-format-2.1.16/debian/tmp pybuild --install -i python{version} -p 3.13 --dest-dir=/build/reproducible-path/python-biom-format-2.1.16/debian/tmp I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/README.md -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/sam_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table_hdf5_group_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/obs_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/min_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/parse.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/err.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/exception.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/table.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_validator.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_ids.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_head.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_converter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_util.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_table.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_parse.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_err.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/long_lines.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_converter.py to table_converter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_head.py to table_head.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_ids.py to table_ids.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_validator.py to table_validator.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/util.py to util.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/long_lines.py to long_lines.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_err.py to test_err.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_parse.py to test_parse.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_table.py to test_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_util.py to test_util.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/err.py to err.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/exception.py to exception.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/parse.py to parse.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/table.py to table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/util.py to util.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__init__.py to __init__.cpython-313.pyc running install_egg_info Copying biom_format.egg-info to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom_format-2.1.16.egg-info Skipping SOURCES.txt running install_scripts Installing biom script to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/bin I: pybuild pybuild:334: dh_numpy3 Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars find debian/python3-biom-format -name .coverage -delete make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installdocs --indep dh_installdocs: warning: Cannot auto-detect main package for python-biom-format-doc. If the default is wrong, please use --doc-main-package or the X-Doc-Main-Package field install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc cd './build/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/python-biom-format-2.1.16/debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc chmod -R u\+rw,go=rX debian/python-biom-format-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/copyright install -m0755 -d debian/python-biom-format-doc/usr/share/doc-base/ install -p -m0644 debian/python-biom-format-doc.doc-base debian/python-biom-format-doc/usr/share/doc-base/python-biom-format-doc.python-biom-format dh_sphinxdoc --indep ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js rm -rf debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.doctrees rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.buildinfo mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installdocs -O--buildsystem=pybuild -Npython-biom-format-doc install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format cp --reflink=auto -a ./debian/README.test debian/python3-biom-format/usr/share/doc/python3-biom-format cp --reflink=auto -a ./debian/tests/run-unit-test debian/python3-biom-format/usr/share/doc/python3-biom-format chmod -R u\+rw,go=rX debian/python3-biom-format/usr/share/doc install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -p -m0644 debian/.debhelper/generated/python3-biom-format/dh_installchangelogs.dch.trimmed debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -p -m0644 debian/.debhelper/generated/python-biom-format-doc/dh_installchangelogs.dch.trimmed debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog rm -f debian/python-biom-format-doc.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installexamples install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/min_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/min_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/obs_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5_group_metadata.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/sam_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples find debian -name "*.c" -delete find debian -name "*.pyx" -delete # move tests from Python3 package to examples package if [ ! -d biom/tests ] ; then \ mv `find debian/python*biom-format -name tests -type d` biom ; \ else \ find debian/python*biom-format -name tests -type d | xargs rm -rf ; \ fi make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installman -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/share/man/man1/ install -p -m0644 ./debian/biom.1 debian/python3-biom-format/usr/share/man/man1/biom.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-biom-format/usr/share/man/man1/biom.1 mv debian/python3-biom-format/usr/share/man/man1/biom.1.dh-new debian/python3-biom-format/usr/share/man/man1/biom.1 chmod 0644 -- debian/python3-biom-format/usr/share/man/man1/biom.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:166: skipping package python-biom-format-doc (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=python-biom-format, binary packages=['python3-biom-format'] D: dh_python3 dh_python3:205: processing package python3-biom-format... D: dh_python3 fs:50: moving files from debian/python3-biom-format/usr/lib/python3.13/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/ I: dh_python3 tools:114: replacing shebang in debian/python3-biom-format/usr/bin/biom D: dh_python3 fs:249: removing dist-packages/.pytest_cache D: dh_python3 fs:338: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/requires.txt'}, 'egg-info': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-biom-format D: dh_python3 pydist:175: trying to find dependency for click (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for h5py (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for numpy>=1.9.2 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pandas>=0.20.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for scipy>=1.3.1 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-click', 'python3:any', 'python3-numpy', 'python3-h5py', 'python3 (>= 3.13~)', 'python3-pandas', 'python3-scipy', 'python3 (<< 3.14)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1716835050 as canonical time Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bullet_orange.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_warning_32.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bg-page.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_info_32.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_images/biom-format.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-biom-format cd debian/python-biom-format-doc chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 chmod a-x usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 gzip -9nf usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian cd '/build/reproducible-path/python-biom-format-2.1.16' cd '/build/reproducible-path/python-biom-format-2.1.16' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_fixperms find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biom-format-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biom-format-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biom-format/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biom-format-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name exercise_cli.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug chmod 0644 -- debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/39 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/39/1ef0b1b81cfce7c2691edd0fd109db25e7ad39.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/39/1ef0b1b81cfce7c2691edd0fd109db25e7ad39.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/39/1ef0b1b81cfce7c2691edd0fd109db25e7ad39.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/70 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/70/6485d8b5655750c41e35b791fc5f53be291cc2.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/70/6485d8b5655750c41e35b791fc5f53be291cc2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/70/6485d8b5655750c41e35b791fc5f53be291cc2.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/e2/8c8a7096cb6f444cc1eeecf594a5d312da8db2.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/e2/8c8a7096cb6f444cc1eeecf594a5d312da8db2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/e2/8c8a7096cb6f444cc1eeecf594a5d312da8db2.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biom-format/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym install -m0755 -d debian/.debhelper/python3-biom-format dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biom-format/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm install -m0755 -d debian/python-biom-format-doc/DEBIAN dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN echo misc:Depends= >> debian/python3-biom-format.substvars echo misc:Pre-Depends= >> debian/python3-biom-format.substvars install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -cdebian/control -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-biom-format-dbgsym -DDepends="python3-biom-format (= \${binary:Version})" -DDescription="debug symbols for python3-biom-format" -DBuild-Ids="391ef0b1b81cfce7c2691edd0fd109db25e7ad39 706485d8b5655750c41e35b791fc5f53be291cc2 e28c8a7096cb6f444cc1eeecf594a5d312da8db2" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/python-biom-format-doc/DEBIAN echo misc:Depends= >> debian/python-biom-format-doc.substvars echo misc:Pre-Depends= >> debian/python-biom-format-doc.substvars dpkg-gencontrol -ppython-biom-format-doc -ldebian/changelog -Tdebian/python-biom-format-doc.substvars -cdebian/control -Pdebian/python-biom-format-doc chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -cdebian/control -Pdebian/python3-biom-format dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined chmod 0644 -- debian/python-biom-format-doc/DEBIAN/control chmod 0644 -- debian/python3-biom-format/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN install -m0755 -d debian/python-biom-format-doc/DEBIAN cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-biom-format-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python-biom-format-doc/DEBIAN/md5sums chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biom-format .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-biom-format/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python-biom-format-doc .. dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.16-1_arm64.deb'. dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.16-1_arm64.deb'. dpkg-deb: building package 'python-biom-format-doc' in '../python-biom-format-doc_2.1.16-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-biom-format_2.1.16-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-biom-format_2.1.16-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3542052 and its subdirectories I: Current time: Sat Nov 21 22:55:04 -12 2026 I: pbuilder-time-stamp: 1795344904 Mon Oct 20 04:32:06 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Mon Oct 20 04:32:06 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Mon Oct 20 04:34:06 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Mon Oct 20 04:34:06 UTC 2025 I: python-biom-format_2.1.16-1_arm64.changes: Format: 1.8 Date: Mon, 27 May 2024 20:37:30 +0200 Source: python-biom-format Binary: python-biom-format-doc python3-biom-format python3-biom-format-dbgsym Architecture: all arm64 Version: 2.1.16-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python-biom-format-doc - documentation for BIOM format python3-biom-format - Biological Observation Matrix (BIOM) format (Python 3) Changes: python-biom-format (2.1.16-1) unstable; urgency=medium . * New upstream version 2.1.16 * fix_future_import.patch: unfuzz. * ignore_local_dist-packages.patch: unfuzz. * adjust-pd-df-interaction-with-greater-than.patch. Patch deleted, as it was applied upstream. * d/copyright: account for upstream move to Revised BSD. * d/control: declare compliance to standards version 4.7.0. * d/{copyright,watch}: no dfsg repack needed anymore. Upstream repository has been clean of excluded artifacts since 2.1.9. * d/python-biom-format-doc.lintian-overrides: delete. The false positive previously documented does not show up anymore. Checksums-Sha1: 4106533364bad757b49a69a69ba29b8733f9dfac 67032 python-biom-format-doc_2.1.16-1_all.deb 5c9a54710d3ed57d9c09f34249085d89e6920902 11297 python-biom-format_2.1.16-1_arm64.buildinfo a91db509f9616234e1f73ef9283bf2c0f1c11268 373620 python3-biom-format-dbgsym_2.1.16-1_arm64.deb 3ea39686a85cb6ed6e8f2c2bea69344869047212 141156 python3-biom-format_2.1.16-1_arm64.deb Checksums-Sha256: 4833c83aca354d5fae9833b8208e4d4dca29c29f03b7db0d567af43196592095 67032 python-biom-format-doc_2.1.16-1_all.deb b8300873bcb59f1dcc639d29c6aace05c67c41fc72e99f22d96e27e37186aed2 11297 python-biom-format_2.1.16-1_arm64.buildinfo c02943851233a654e0894a184a8f045056f66639421d7f7ff7e552373e7ad3cb 373620 python3-biom-format-dbgsym_2.1.16-1_arm64.deb 2e610aedd67ea063f53f53f9731f68d40e7d1aefab958ff897678b1468fa6d86 141156 python3-biom-format_2.1.16-1_arm64.deb Files: 4e0741be51dea11c5d557cace58d5e3f 67032 doc optional python-biom-format-doc_2.1.16-1_all.deb 082b6caccf828a329b52f4553bb928e7 11297 python optional python-biom-format_2.1.16-1_arm64.buildinfo df09884c47bf389a5f851628b48cd091 373620 debug optional python3-biom-format-dbgsym_2.1.16-1_arm64.deb 72651c491c997470dd5171f65b5d9b1f 141156 python optional python3-biom-format_2.1.16-1_arm64.deb Mon Oct 20 04:34:07 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_2-117421.service; invocation ID: c21b23c16f2342139193bfa57ffa8e8a # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.7ZJBU3QP/python-biom-format_2.1.16-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.7ZJBU3QP/python-biom-format_2.1.16-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.7ZJBU3QP/python-biom-format_2.1.16-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.7ZJBU3QP/b1/python-biom-format_2.1.16-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.7ZJBU3QP/b2/python-biom-format_2.1.16-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 215ms CPU time consumed: 174ms Memory peak: 17.1M (swap: 0B) Mon Oct 20 04:34:07 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Mon Oct 20 04:34:07 UTC 2025 I: python-biom-format from forky built successfully and reproducibly on arm64. Mon Oct 20 04:34:08 UTC 2025 I: Removing signed python-biom-format_2.1.16-1_arm64.buildinfo.asc files: removed './b1/python-biom-format_2.1.16-1_arm64.buildinfo.asc' removed './b2/python-biom-format_2.1.16-1_arm64.buildinfo.asc'