Sun Oct 12 10:56:43 UTC 2025 I: starting to build python-bx/forky/arm64 on jenkins on '2025-10-12 10:56' Sun Oct 12 10:56:43 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_3/119433/console.log Sun Oct 12 10:56:43 UTC 2025 I: Downloading source for forky/python-bx=0.13.0-2 --2025-10-12 10:56:43-- http://deb.debian.org/debian/pool/main/p/python-bx/python-bx_0.13.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1916 (1.9K) [text/prs.lines.tag] Saving to: ‘python-bx_0.13.0-2.dsc’ 0K . 100% 226M=0s 2025-10-12 10:56:43 (226 MB/s) - ‘python-bx_0.13.0-2.dsc’ saved [1916/1916] Sun Oct 12 10:56:43 UTC 2025 I: python-bx_0.13.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-bx Binary: python3-bx Architecture: any Version: 0.13.0-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Michael R. Crusoe Homepage: https://github.com/bxlab/bx-python Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/python-bx Vcs-Git: https://salsa.debian.org/med-team/python-bx.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, zlib1g-dev, python3-setuptools, pybuild-plugin-pyproject, python3-all-dev:any, python3-lzo, python3-pyparsing , python3-pytest , python3-pytest-cython , python3-numpy, python3-numpy-dev, cython3 Package-List: python3-bx deb python optional arch=any Checksums-Sha1: bb4f1db8e7b49d900539bb64d9ab0ad5f4c43d32 1611987 python-bx_0.13.0.orig.tar.gz fd207e8d605acf0e17a4822dffcac9da383a5666 13876 python-bx_0.13.0-2.debian.tar.xz Checksums-Sha256: 90016460f4799758dc2891cf3209fbbbe41c9e7221a49821d958089c47bbbe33 1611987 python-bx_0.13.0.orig.tar.gz d50d95cd6cb3a7a49ad2785ab0b9da74861f555c9003d3b3e2867c17b0949a1a 13876 python-bx_0.13.0-2.debian.tar.xz Files: f1b5b00c996f8a4ff38794ab99b67ccf 1611987 python-bx_0.13.0.orig.tar.gz d12ce573413a6679cb52d9e22d9c60ae 13876 python-bx_0.13.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEE1Uw7+v+wQt44LaXXQc5/C58bizIFAmjj6aEACgkQQc5/C58b izKj7ggAlscTaR2jWg9wQOSAZNRSks/X8f784NmNkMhrZ8AzcMAxdxcEmbX570Ec 1jeH63c0vHNpkoD5og0DNXf3Sr44BngewDh4tg+qig/m7U2CjjhjprspndU63Ezz tUxBvREzceXfazS5RFO6tSbHX98l7KmGStJYFxm0vOTTorFLjMPMxnKeFYcVPZ/N XJRrIPix/oFZCQw5Hx/Sk8ybWcygDIu18VWC5LJVTfk6WOrRcCE5bDUsUYqv9lIF GyH+1e/veXf8KoraCZkwxmX7jQtl8MnJ5dfbc+ZKbkZYfpQjIRM3r69IWE9FDnum rRfa6LsBqvKMsRdx4kdoaTULZ+tUTw== =O7zH -----END PGP SIGNATURE----- Sun Oct 12 10:56:43 UTC 2025 I: Checking whether the package is not for us Sun Oct 12 10:56:43 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sun Oct 12 10:56:43 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sun Oct 12 10:59:11 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 14 05:19:45 -12 2026 I: pbuilder-time-stamp: 1794676785 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-bx_0.13.0-2.dsc] I: copying [./python-bx_0.13.0.orig.tar.gz] I: copying [./python-bx_0.13.0-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-bx_0.13.0-2.dsc: no acceptable signature found dpkg-source: info: extracting python-bx in python-bx-0.13.0 dpkg-source: info: unpacking python-bx_0.13.0.orig.tar.gz dpkg-source: info: unpacking python-bx_0.13.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying shebang.patch dpkg-source: info: applying fix_BIN_OFFSETS_MAX I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3942477/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3942477' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.or47X2SU/pbuilderrc_DLop --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.or47X2SU/b1 --logfile b1/build.log python-bx_0.13.0-2.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3942477/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, zlib1g-dev, python3-setuptools, pybuild-plugin-pyproject, python3-all-dev:any, python3-lzo, python3-pyparsing, python3-pytest, python3-pytest-cython, python3-numpy, python3-numpy-dev, cython3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on python3-lzo; however: Package python3-lzo is not installed. pbuilder-satisfydepends-dummy depends on python3-pyparsing; however: Package python3-pyparsing is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cython; however: Package python3-pytest-cython is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy-dev; however: Package python3-numpy-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libjs-sphinxdoc{a} liblapack3{a} liblzo2-2{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-lzo{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-cython{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 86 newly installed, 0 to remove and 0 not upgraded. Need to get 37.0 MB of archives. After unpacking 162 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1.2 [138 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-4 [371 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 python3-numpy arm64 1:2.2.4+ds-1.2 [3620 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-1 [94.3 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 42 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.3-1 [150 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-7 [27.6 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 liblzo2-2 arm64 2.10-3+b1 [49.6 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.7-1 [1978 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.7-1 [4924 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.7-1 [1068 B] Get: 59 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 python3-build all 1.2.2-4 [36.2 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 66 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.7-1 [504 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.7-1 [1068 B] Get: 69 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 75 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 81 http://deb.debian.org/debian forky/main arm64 python3-lzo arm64 1.15-2+b4 [8896 B] Get: 82 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.4.2-1 [266 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 python3-pytest-cython all 0.3.1-1 [8032 B] Fetched 37.0 MB in 0s (123 MB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... 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Setting up libblas3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.7.3-1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1.2) ... Setting up autopoint (0.23.1-2) ... Setting up libjs-sphinxdoc (8.2.3-7) ... Setting up libgfortran5:arm64 (15.2.0-4) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblapack3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.7-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libpython3.13:arm64 (3.13.7-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (25.0-1) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up libpython3.13-dev:arm64 (3.13.7-1) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-lzo:arm64 (1.15-2+b4) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.28) ... Setting up python3-wheel (0.46.1-2) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-build (1.2.2-4) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-pytest-cython (0.3.1-1) ... Setting up pybuild-plugin-pyproject (6.20250414) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/python-bx-0.13.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bx_0.13.0-2_source.changes dpkg-buildpackage: info: source package python-bx dpkg-buildpackage: info: source version 0.13.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Santiago Vila dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-bx-0.13.0' find -name "*.pyx" | sed 's/pyx$/c/' | xargs rm -f grep -rli "Generated by Cython" lib/ | xargs -r rm rm -rf lib/bx_python.egg-info make[1]: Leaving directory '/build/reproducible-path/python-bx-0.13.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-bx-0.13.0/.pybuild/cpython3_3.13_bx-python * Building wheel... /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-aarch64-cpython-313/bx_extras copying lib/bx_extras/stats.py -> build/lib.linux-aarch64-cpython-313/bx_extras copying lib/bx_extras/pstat.py -> build/lib.linux-aarch64-cpython-313/bx_extras copying lib/bx_extras/lrucache.py -> build/lib.linux-aarch64-cpython-313/bx_extras copying lib/bx_extras/fpconst_tests.py -> build/lib.linux-aarch64-cpython-313/bx_extras copying lib/bx_extras/fpconst.py -> build/lib.linux-aarch64-cpython-313/bx_extras copying lib/bx_extras/__init__.py -> build/lib.linux-aarch64-cpython-313/bx_extras creating build/lib.linux-aarch64-cpython-313/bx copying lib/bx/interval_index_file.py -> build/lib.linux-aarch64-cpython-313/bx copying lib/bx/wiggle_tests.py -> build/lib.linux-aarch64-cpython-313/bx copying lib/bx/wiggle.py -> build/lib.linux-aarch64-cpython-313/bx copying lib/bx/seqmapping_tests.py -> build/lib.linux-aarch64-cpython-313/bx copying lib/bx/seqmapping.py -> build/lib.linux-aarch64-cpython-313/bx copying lib/bx/interval_index_file_tests.py -> build/lib.linux-aarch64-cpython-313/bx copying lib/bx/gene_reader.py -> build/lib.linux-aarch64-cpython-313/bx copying lib/bx/filter.py -> build/lib.linux-aarch64-cpython-313/bx copying lib/bx/bitset_utils.py -> build/lib.linux-aarch64-cpython-313/bx copying lib/bx/bitset_tests.py -> build/lib.linux-aarch64-cpython-313/bx copying lib/bx/bitset_builders.py -> build/lib.linux-aarch64-cpython-313/bx copying lib/bx/binned_array_tests.py -> build/lib.linux-aarch64-cpython-313/bx copying lib/bx/binned_array.py -> build/lib.linux-aarch64-cpython-313/bx copying lib/bx/__init__.py -> build/lib.linux-aarch64-cpython-313/bx creating build/lib.linux-aarch64-cpython-313/bx/tabular copying lib/bx/tabular/io.py -> build/lib.linux-aarch64-cpython-313/bx/tabular copying lib/bx/tabular/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/tabular creating build/lib.linux-aarch64-cpython-313/bx/seq copying lib/bx/seq/twobit_tests.py -> build/lib.linux-aarch64-cpython-313/bx/seq copying lib/bx/seq/twobit.py -> build/lib.linux-aarch64-cpython-313/bx/seq copying lib/bx/seq/seq_tests.py -> build/lib.linux-aarch64-cpython-313/bx/seq copying lib/bx/seq/seq.py -> build/lib.linux-aarch64-cpython-313/bx/seq copying lib/bx/seq/qdna_tests.py -> build/lib.linux-aarch64-cpython-313/bx/seq copying lib/bx/seq/qdna.py -> build/lib.linux-aarch64-cpython-313/bx/seq copying lib/bx/seq/nib_tests.py -> build/lib.linux-aarch64-cpython-313/bx/seq copying lib/bx/seq/nib.py -> build/lib.linux-aarch64-cpython-313/bx/seq copying lib/bx/seq/fasta_tests.py -> build/lib.linux-aarch64-cpython-313/bx/seq copying lib/bx/seq/fasta.py -> build/lib.linux-aarch64-cpython-313/bx/seq copying lib/bx/seq/core.py -> build/lib.linux-aarch64-cpython-313/bx/seq copying lib/bx/seq/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/seq creating build/lib.linux-aarch64-cpython-313/bx/pwm copying lib/bx/pwm/pwm_score_maf.py -> build/lib.linux-aarch64-cpython-313/bx/pwm copying lib/bx/pwm/pwm_score_positions.py -> build/lib.linux-aarch64-cpython-313/bx/pwm copying lib/bx/pwm/pwm_score_motifs.py -> build/lib.linux-aarch64-cpython-313/bx/pwm copying lib/bx/pwm/position_weight_matrix.py -> build/lib.linux-aarch64-cpython-313/bx/pwm copying lib/bx/pwm/maf_select_motifs.py -> build/lib.linux-aarch64-cpython-313/bx/pwm copying lib/bx/pwm/bed_score_aligned_string.py -> build/lib.linux-aarch64-cpython-313/bx/pwm copying lib/bx/pwm/bed_score_aligned_pwm.py -> build/lib.linux-aarch64-cpython-313/bx/pwm copying lib/bx/pwm/pwm_tests.py -> build/lib.linux-aarch64-cpython-313/bx/pwm copying lib/bx/pwm/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/pwm creating build/lib.linux-aarch64-cpython-313/bx/phylo copying lib/bx/phylo/phast_tests.py -> build/lib.linux-aarch64-cpython-313/bx/phylo copying lib/bx/phylo/phast.py -> build/lib.linux-aarch64-cpython-313/bx/phylo copying lib/bx/phylo/newick_tests.py -> build/lib.linux-aarch64-cpython-313/bx/phylo copying lib/bx/phylo/newick.py -> build/lib.linux-aarch64-cpython-313/bx/phylo copying lib/bx/phylo/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/phylo creating build/lib.linux-aarch64-cpython-313/bx/motif copying lib/bx/motif/pwm_tests.py -> build/lib.linux-aarch64-cpython-313/bx/motif copying lib/bx/motif/pwm.py -> build/lib.linux-aarch64-cpython-313/bx/motif copying lib/bx/motif/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/motif creating build/lib.linux-aarch64-cpython-313/bx/misc copying lib/bx/misc/seeklzop_tests.py -> build/lib.linux-aarch64-cpython-313/bx/misc copying lib/bx/misc/seeklzop.py -> build/lib.linux-aarch64-cpython-313/bx/misc copying lib/bx/misc/seekbzip2_tests.py -> build/lib.linux-aarch64-cpython-313/bx/misc copying lib/bx/misc/seekbzip2.py -> build/lib.linux-aarch64-cpython-313/bx/misc copying lib/bx/misc/readlengths.py -> build/lib.linux-aarch64-cpython-313/bx/misc copying lib/bx/misc/filecache_tests.py -> build/lib.linux-aarch64-cpython-313/bx/misc copying lib/bx/misc/filecache.py -> build/lib.linux-aarch64-cpython-313/bx/misc copying lib/bx/misc/cdb_tests.py -> build/lib.linux-aarch64-cpython-313/bx/misc copying lib/bx/misc/cdb.py -> build/lib.linux-aarch64-cpython-313/bx/misc copying lib/bx/misc/binary_file.py -> build/lib.linux-aarch64-cpython-313/bx/misc copying lib/bx/misc/bgzf_tests.py -> build/lib.linux-aarch64-cpython-313/bx/misc copying lib/bx/misc/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/misc creating build/lib.linux-aarch64-cpython-313/bx/intseq copying lib/bx/intseq/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/intseq creating build/lib.linux-aarch64-cpython-313/bx/intervals copying lib/bx/intervals/random_intervals.py -> build/lib.linux-aarch64-cpython-313/bx/intervals copying lib/bx/intervals/io.py -> build/lib.linux-aarch64-cpython-313/bx/intervals copying lib/bx/intervals/intersection_tests.py -> build/lib.linux-aarch64-cpython-313/bx/intervals copying lib/bx/intervals/cluster_tests.py -> build/lib.linux-aarch64-cpython-313/bx/intervals copying lib/bx/intervals/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/intervals creating build/lib.linux-aarch64-cpython-313/bx/cookbook copying lib/bx/cookbook/doc_optparse.py -> build/lib.linux-aarch64-cpython-313/bx/cookbook copying lib/bx/cookbook/attribute.py -> build/lib.linux-aarch64-cpython-313/bx/cookbook copying lib/bx/cookbook/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/cookbook creating build/lib.linux-aarch64-cpython-313/bx/bbi copying lib/bx/bbi/bigwig_tests.py -> build/lib.linux-aarch64-cpython-313/bx/bbi copying lib/bx/bbi/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/bbi creating build/lib.linux-aarch64-cpython-313/bx/arrays copying lib/bx/arrays/array_tree_tests.py -> build/lib.linux-aarch64-cpython-313/bx/arrays copying lib/bx/arrays/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/arrays creating build/lib.linux-aarch64-cpython-313/bx/align copying lib/bx/align/epo_tests.py -> build/lib.linux-aarch64-cpython-313/bx/align copying lib/bx/align/epo.py -> build/lib.linux-aarch64-cpython-313/bx/align copying lib/bx/align/score_tests.py -> build/lib.linux-aarch64-cpython-313/bx/align copying lib/bx/align/score.py -> build/lib.linux-aarch64-cpython-313/bx/align copying lib/bx/align/maf_tests.py -> build/lib.linux-aarch64-cpython-313/bx/align copying lib/bx/align/maf.py -> build/lib.linux-aarch64-cpython-313/bx/align copying lib/bx/align/lav_tests.py -> build/lib.linux-aarch64-cpython-313/bx/align copying lib/bx/align/lav.py -> build/lib.linux-aarch64-cpython-313/bx/align copying lib/bx/align/core.py -> build/lib.linux-aarch64-cpython-313/bx/align copying lib/bx/align/axt.py -> build/lib.linux-aarch64-cpython-313/bx/align copying lib/bx/align/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/align creating build/lib.linux-aarch64-cpython-313/bx/motif/logo copying lib/bx/motif/logo/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/motif/logo creating build/lib.linux-aarch64-cpython-313/bx/motif/io copying lib/bx/motif/io/transfac_tests.py -> build/lib.linux-aarch64-cpython-313/bx/motif/io copying lib/bx/motif/io/transfac.py -> build/lib.linux-aarch64-cpython-313/bx/motif/io copying lib/bx/motif/io/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/motif/io creating build/lib.linux-aarch64-cpython-313/bx/intervals/operations copying lib/bx/intervals/operations/subtract.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations copying lib/bx/intervals/operations/quicksect.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations copying lib/bx/intervals/operations/merge.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations copying lib/bx/intervals/operations/join.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations copying lib/bx/intervals/operations/intersect.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations copying lib/bx/intervals/operations/find_clusters.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations copying lib/bx/intervals/operations/coverage.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations copying lib/bx/intervals/operations/concat.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations copying lib/bx/intervals/operations/complement.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations copying lib/bx/intervals/operations/base_coverage.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations copying lib/bx/intervals/operations/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/intervals/operations creating build/lib.linux-aarch64-cpython-313/bx/align/tools copying lib/bx/align/tools/tile.py -> build/lib.linux-aarch64-cpython-313/bx/align/tools copying lib/bx/align/tools/thread.py -> build/lib.linux-aarch64-cpython-313/bx/align/tools copying lib/bx/align/tools/fuse.py -> build/lib.linux-aarch64-cpython-313/bx/align/tools copying lib/bx/align/tools/chop.py -> build/lib.linux-aarch64-cpython-313/bx/align/tools copying lib/bx/align/tools/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/align/tools creating build/lib.linux-aarch64-cpython-313/bx/align/sitemask copying lib/bx/align/sitemask/sitemask_tests.py -> build/lib.linux-aarch64-cpython-313/bx/align/sitemask copying lib/bx/align/sitemask/quality.py -> build/lib.linux-aarch64-cpython-313/bx/align/sitemask copying lib/bx/align/sitemask/cpg.py -> build/lib.linux-aarch64-cpython-313/bx/align/sitemask copying lib/bx/align/sitemask/core.py -> build/lib.linux-aarch64-cpython-313/bx/align/sitemask copying lib/bx/align/sitemask/__init__.py -> build/lib.linux-aarch64-cpython-313/bx/align/sitemask copying lib/bx/motif/logo/template.ps -> build/lib.linux-aarch64-cpython-313/bx/motif/logo running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/bitset.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/bitset.pyx because it changed. [1/1] Cythonizing lib/bx/bitset.pyx building 'bx.bitset' extension creating build/temp.linux-aarch64-cpython-313/lib/bx creating build/temp.linux-aarch64-cpython-313/src creating build/temp.linux-aarch64-cpython-313/src/kent aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.13 -c lib/bx/bitset.c -o build/temp.linux-aarch64-cpython-313/lib/bx/bitset.o aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.13 -c src/binBits.c -o build/temp.linux-aarch64-cpython-313/src/binBits.o aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.13 -c src/kent/bits.c -o build/temp.linux-aarch64-cpython-313/src/kent/bits.o aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.13 -c src/kent/common.c -o build/temp.linux-aarch64-cpython-313/src/kent/common.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/bitset.o build/temp.linux-aarch64-cpython-313/src/binBits.o build/temp.linux-aarch64-cpython-313/src/kent/bits.o build/temp.linux-aarch64-cpython-313/src/kent/common.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/bitset.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/intervals/intersection.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/intervals/intersection.pyx because it changed. [1/1] Cythonizing lib/bx/intervals/intersection.pyx building 'bx.intervals.intersection' extension creating build/temp.linux-aarch64-cpython-313/lib/bx/intervals aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/intervals/intersection.c -o build/temp.linux-aarch64-cpython-313/lib/bx/intervals/intersection.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/intervals/intersection.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/intervals/intersection.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/align/_core.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/align/_core.pyx because it changed. [1/1] Cythonizing lib/bx/align/_core.pyx building 'bx.align._core' extension creating build/temp.linux-aarch64-cpython-313/lib/bx/align aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/align/_core.c -o build/temp.linux-aarch64-cpython-313/lib/bx/align/_core.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/align/_core.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/align/_core.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/seq/_nib.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/seq/_nib.pyx because it changed. [1/1] Cythonizing lib/bx/seq/_nib.pyx building 'bx.seq._nib' extension creating build/temp.linux-aarch64-cpython-313/lib/bx/seq aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/seq/_nib.c -o build/temp.linux-aarch64-cpython-313/lib/bx/seq/_nib.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/seq/_nib.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/seq/_nib.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/seq/_twobit.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/seq/_twobit.pyx because it changed. [1/1] Cythonizing lib/bx/seq/_twobit.pyx building 'bx.seq._twobit' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/seq/_twobit.c -o build/temp.linux-aarch64-cpython-313/lib/bx/seq/_twobit.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/seq/_twobit.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/seq/_twobit.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/_seqmapping.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/_seqmapping.pyx because it changed. [1/1] Cythonizing lib/bx/_seqmapping.pyx building 'bx._seqmapping' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/_seqmapping.c -o build/temp.linux-aarch64-cpython-313/lib/bx/_seqmapping.o In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping___cinit__’, inlined from ‘__pyx_pw_2bx_11_seqmapping_15IntToIntMapping_1__cinit__’ at lib/bx/_seqmapping.c:5104:13, inlined from ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’ at lib/bx/_seqmapping.c:8107:7: lib/bx/_seqmapping.c:5142:33: warning: argument 1 value ‘18446744073709551612’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 5142 | __pyx_v_self->table = ((int *)malloc((__pyx_v_in_size * (sizeof(int))))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.13/Python.h:39, from lib/bx/_seqmapping.c:29: /usr/include/stdlib.h: In function ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’: /usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/_seqmapping.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/_seqmapping.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/misc/bgzf.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/misc/bgzf.pyx because it changed. [1/1] Cythonizing lib/bx/misc/bgzf.pyx building 'bx.misc.bgzf' extension creating build/temp.linux-aarch64-cpython-313/lib/bx/misc creating build/temp.linux-aarch64-cpython-313/src/samtools aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.13 -c lib/bx/misc/bgzf.c -o build/temp.linux-aarch64-cpython-313/lib/bx/misc/bgzf.o aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.13 -c src/samtools/bgzf.c -o build/temp.linux-aarch64-cpython-313/src/samtools/bgzf.o src/samtools/bgzf.c: In function ‘bgzf_check_EOF’: src/samtools/bgzf.c:662:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 662 | fread(buf, 1, 28, fp->file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/misc/bgzf.o build/temp.linux-aarch64-cpython-313/src/samtools/bgzf.o -L/usr/lib/aarch64-linux-gnu -lz -o build/lib.linux-aarch64-cpython-313/bx/misc/bgzf.cpython-313-aarch64-linux-gnu.so /usr/lib/aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/intervals/cluster.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/intervals/cluster.pyx because it changed. [1/1] Cythonizing lib/bx/intervals/cluster.pyx building 'bx.intervals.cluster' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.13 -c lib/bx/intervals/cluster.c -o build/temp.linux-aarch64-cpython-313/lib/bx/intervals/cluster.o aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.13 -c src/cluster.c -o build/temp.linux-aarch64-cpython-313/src/cluster.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/intervals/cluster.o build/temp.linux-aarch64-cpython-313/src/cluster.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/intervals/cluster.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/pwm/_position_weight_matrix.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/pwm/_position_weight_matrix.pyx because it changed. [1/1] Cythonizing lib/bx/pwm/_position_weight_matrix.pyx building 'bx.pwm._position_weight_matrix' extension creating build/temp.linux-aarch64-cpython-313/lib/bx/pwm aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.13 -c lib/bx/pwm/_position_weight_matrix.c -o build/temp.linux-aarch64-cpython-313/lib/bx/pwm/_position_weight_matrix.o aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.13 -c src/pwm_utils.c -o build/temp.linux-aarch64-cpython-313/src/pwm_utils.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/pwm/_position_weight_matrix.o build/temp.linux-aarch64-cpython-313/src/pwm_utils.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/pwm/_position_weight_matrix.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/motif/_pwm.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/motif/_pwm.pyx because it changed. [1/1] Cythonizing lib/bx/motif/_pwm.pyx building 'bx.motif._pwm' extension creating build/temp.linux-aarch64-cpython-313/lib/bx/motif aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c lib/bx/motif/_pwm.c -o build/temp.linux-aarch64-cpython-313/lib/bx/motif/_pwm.o In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from lib/bx/motif/_pwm.c:1240: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/motif/_pwm.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/motif/_pwm.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/arrays/array_tree.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/arrays/array_tree.pyx because it changed. [1/1] Cythonizing lib/bx/arrays/array_tree.pyx building 'bx.arrays.array_tree' extension creating build/temp.linux-aarch64-cpython-313/lib/bx/arrays aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c lib/bx/arrays/array_tree.c -o build/temp.linux-aarch64-cpython-313/lib/bx/arrays/array_tree.o In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from lib/bx/arrays/array_tree.c:1249: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/arrays/array_tree.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/arrays/array_tree.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/bbi/bpt_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/bbi/bpt_file.pyx because it changed. [1/1] Cythonizing lib/bx/bbi/bpt_file.pyx building 'bx.bbi.bpt_file' extension creating build/temp.linux-aarch64-cpython-313/lib/bx/bbi aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/bbi/bpt_file.c -o build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bpt_file.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bpt_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/bbi/bpt_file.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/bbi/cirtree_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/bbi/cirtree_file.pyx because it changed. [1/1] Cythonizing lib/bx/bbi/cirtree_file.pyx building 'bx.bbi.cirtree_file' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/bbi/cirtree_file.c -o build/temp.linux-aarch64-cpython-313/lib/bx/bbi/cirtree_file.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/bbi/cirtree_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/bbi/cirtree_file.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/bbi/bbi_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/bbi/bbi_file.pyx because it changed. [1/1] Cythonizing lib/bx/bbi/bbi_file.pyx building 'bx.bbi.bbi_file' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c lib/bx/bbi/bbi_file.c -o build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bbi_file.o In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from lib/bx/bbi/bbi_file.c:1249: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bbi_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/bbi/bbi_file.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/bbi/bigwig_file.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/bbi/bigwig_file.pyx because it changed. [1/1] Cythonizing lib/bx/bbi/bigwig_file.pyx building 'bx.bbi.bigwig_file' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c lib/bx/bbi/bigwig_file.c -o build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bigwig_file.o In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from lib/bx/bbi/bigwig_file.c:1249: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bigwig_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/bbi/bigwig_file.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/bbi/bigbed_file.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/bbi/bigbed_file.pyx because it changed. [1/1] Cythonizing lib/bx/bbi/bigbed_file.pyx building 'bx.bbi.bigbed_file' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c lib/bx/bbi/bigbed_file.c -o build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bigbed_file.o In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from lib/bx/bbi/bigbed_file.c:1249: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/bbi/bigbed_file.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/bbi/bigbed_file.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/align/_epo.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/align/_epo.pyx because it changed. [1/1] Cythonizing lib/bx/align/_epo.pyx building 'bx.align._epo' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c lib/bx/align/_epo.c -o build/temp.linux-aarch64-cpython-313/lib/bx/align/_epo.o In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from lib/bx/align/_epo.c:1249: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/align/_epo.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/align/_epo.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/arrays/bed.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/arrays/bed.pyx because it changed. [1/1] Cythonizing lib/bx/arrays/bed.pyx building 'bx.arrays.bed' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/arrays/bed.c -o build/temp.linux-aarch64-cpython-313/lib/bx/arrays/bed.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/arrays/bed.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/arrays/bed.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/arrays/wiggle.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: lib/bx/arrays/wiggle.pyx:94:20: Unreachable code Compiling lib/bx/arrays/wiggle.pyx because it changed. [1/1] Cythonizing lib/bx/arrays/wiggle.pyx building 'bx.arrays.wiggle' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/arrays/wiggle.c -o build/temp.linux-aarch64-cpython-313/lib/bx/arrays/wiggle.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/arrays/wiggle.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/arrays/wiggle.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/align/sitemask/_cpg.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/align/sitemask/_cpg.pyx because it changed. [1/1] Cythonizing lib/bx/align/sitemask/_cpg.pyx building 'bx.align.sitemask._cpg' extension creating build/temp.linux-aarch64-cpython-313/lib/bx/align/sitemask aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/align/sitemask/_cpg.c -o build/temp.linux-aarch64-cpython-313/lib/bx/align/sitemask/_cpg.o aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c lib/bx/align/sitemask/find_cpg.c -o build/temp.linux-aarch64-cpython-313/lib/bx/align/sitemask/find_cpg.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/align/sitemask/_cpg.o build/temp.linux-aarch64-cpython-313/lib/bx/align/sitemask/find_cpg.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/align/sitemask/_cpg.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/intseq/ngramcount.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/intseq/ngramcount.pyx because it changed. [1/1] Cythonizing lib/bx/intseq/ngramcount.pyx building 'bx.intseq.ngramcount' extension creating build/temp.linux-aarch64-cpython-313/lib/bx/intseq aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.13 -c lib/bx/intseq/ngramcount.c -o build/temp.linux-aarch64-cpython-313/lib/bx/intseq/ngramcount.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/intseq/ngramcount.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/intseq/ngramcount.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-bx-0.13.0/lib/bx/misc/_seekbzip2.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling lib/bx/misc/_seekbzip2.pyx because it changed. [1/1] Cythonizing lib/bx/misc/_seekbzip2.pyx building 'bx.misc._seekbzip2' extension creating build/temp.linux-aarch64-cpython-313/src/bunzip aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.13 -c lib/bx/misc/_seekbzip2.c -o build/temp.linux-aarch64-cpython-313/lib/bx/misc/_seekbzip2.o aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.13 -c src/bunzip/micro-bunzip.c -o build/temp.linux-aarch64-cpython-313/src/bunzip/micro-bunzip.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-bx-0.13.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/lib/bx/misc/_seekbzip2.o build/temp.linux-aarch64-cpython-313/src/bunzip/micro-bunzip.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/bx/misc/_seekbzip2.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. running build_scripts creating build/scripts-3.13 copying and adjusting scripts/wiggle_to_simple.py -> build/scripts-3.13 copying and adjusting scripts/wiggle_to_chr_binned_array.py -> build/scripts-3.13 copying and adjusting scripts/wiggle_to_binned_array.py -> build/scripts-3.13 copying and adjusting scripts/wiggle_to_array_tree.py -> build/scripts-3.13 copying and adjusting scripts/ucsc_gene_table_to_intervals.py -> build/scripts-3.13 copying and adjusting scripts/tfloc_summary.py -> build/scripts-3.13 copying and adjusting scripts/table_filter.py -> build/scripts-3.13 copying and adjusting scripts/table_add_column.py -> build/scripts-3.13 copying and adjusting scripts/random_lines.py -> build/scripts-3.13 copying and adjusting scripts/qv_to_bqv.py -> build/scripts-3.13 copying and adjusting scripts/pretty_table.py -> build/scripts-3.13 copying and adjusting scripts/prefix_lines.py -> build/scripts-3.13 copying and adjusting scripts/out_to_chain.py -> build/scripts-3.13 copying and adjusting scripts/one_field_per_line.py -> build/scripts-3.13 copying and adjusting scripts/nib_length.py -> build/scripts-3.13 copying and adjusting scripts/nib_intervals_to_fasta.py -> build/scripts-3.13 copying and adjusting scripts/nib_chrom_intervals_to_fasta.py -> build/scripts-3.13 copying and adjusting scripts/mask_quality.py -> build/scripts-3.13 copying and adjusting scripts/maf_word_frequency.py -> build/scripts-3.13 copying and adjusting scripts/maf_truncate.py -> build/scripts-3.13 copying and adjusting scripts/maf_translate_chars.py -> build/scripts-3.13 copying and adjusting scripts/maf_to_int_seqs.py -> build/scripts-3.13 copying and adjusting scripts/maf_to_fasta.py -> build/scripts-3.13 copying and adjusting scripts/maf_to_concat_fasta.py -> build/scripts-3.13 copying and adjusting scripts/maf_to_axt.py -> build/scripts-3.13 copying and adjusting scripts/maf_tile_2bit.py -> build/scripts-3.13 copying and adjusting scripts/maf_tile_2.py -> build/scripts-3.13 copying and adjusting scripts/maf_tile.py -> build/scripts-3.13 copying and adjusting scripts/maf_thread_for_species.py -> build/scripts-3.13 copying and adjusting scripts/maf_split_by_src.py -> build/scripts-3.13 copying and adjusting scripts/maf_species_in_all_files.py -> build/scripts-3.13 copying and adjusting scripts/maf_shuffle_columns.py -> build/scripts-3.13 copying and adjusting scripts/maf_select.py -> build/scripts-3.13 copying and adjusting scripts/maf_region_coverage_by_src.py -> build/scripts-3.13 copying and adjusting scripts/maf_randomize.py -> build/scripts-3.13 copying and adjusting scripts/maf_print_scores.py -> build/scripts-3.13 copying and adjusting scripts/maf_print_chroms.py -> build/scripts-3.13 copying and adjusting scripts/maf_percent_identity.py -> build/scripts-3.13 copying and adjusting scripts/maf_percent_columns_matching.py -> build/scripts-3.13 copying and adjusting scripts/maf_mean_length_ungapped_piece.py -> build/scripts-3.13 copying and adjusting scripts/maf_mask_cpg.py -> build/scripts-3.13 copying and adjusting scripts/maf_mapping_word_frequency.py -> build/scripts-3.13 copying and adjusting scripts/maf_limit_to_species.py -> build/scripts-3.13 copying and adjusting scripts/maf_interval_alignibility.py -> build/scripts-3.13 copying and adjusting scripts/maf_gc_content.py -> build/scripts-3.13 copying and adjusting scripts/maf_gap_frequency.py -> build/scripts-3.13 copying and adjusting scripts/maf_filter_max_wc.py -> build/scripts-3.13 copying and adjusting scripts/maf_filter.py -> build/scripts-3.13 copying and adjusting scripts/maf_extract_ranges_indexed.py -> build/scripts-3.13 copying and adjusting scripts/maf_extract_ranges.py -> build/scripts-3.13 copying and adjusting scripts/maf_extract_chrom_ranges.py -> build/scripts-3.13 copying and adjusting scripts/maf_drop_overlapping.py -> build/scripts-3.13 copying and adjusting scripts/maf_div_sites.py -> build/scripts-3.13 copying and adjusting scripts/maf_covered_regions.py -> build/scripts-3.13 copying and adjusting scripts/maf_covered_ranges.py -> build/scripts-3.13 copying and adjusting scripts/maf_count.py -> build/scripts-3.13 copying and adjusting scripts/maf_col_counts_all.py -> build/scripts-3.13 copying and adjusting scripts/maf_col_counts.py -> build/scripts-3.13 copying and adjusting scripts/maf_chunk.py -> build/scripts-3.13 copying and adjusting scripts/maf_chop.py -> build/scripts-3.13 copying and adjusting scripts/maf_build_index.py -> build/scripts-3.13 copying and adjusting scripts/mMK_bitset.py -> build/scripts-3.13 copying and adjusting scripts/lzop_build_offset_table.py -> build/scripts-3.13 copying and adjusting scripts/line_select.py -> build/scripts-3.13 copying and adjusting scripts/lav_to_maf.py -> build/scripts-3.13 copying and adjusting scripts/lav_to_axt.py -> build/scripts-3.13 copying and adjusting scripts/interval_join.py -> build/scripts-3.13 copying and adjusting scripts/interval_count_intersections.py -> build/scripts-3.13 copying and adjusting scripts/int_seqs_to_char_strings.py -> build/scripts-3.13 copying and adjusting scripts/get_scores_in_intervals.py -> build/scripts-3.13 copying and adjusting scripts/find_in_sorted_file.py -> build/scripts-3.13 copying and adjusting scripts/div_snp_table_chr.py -> build/scripts-3.13 copying and adjusting scripts/bnMapper.py -> build/scripts-3.13 copying and adjusting scripts/bed_subtract_basewise.py -> build/scripts-3.13 copying and adjusting scripts/bed_rand_intersect.py -> build/scripts-3.13 copying and adjusting scripts/bed_merge_overlapping.py -> build/scripts-3.13 copying and adjusting scripts/bed_intersect_basewise.py -> build/scripts-3.13 copying and adjusting scripts/bed_intersect.py -> build/scripts-3.13 copying and adjusting scripts/bed_extend_to.py -> build/scripts-3.13 copying and adjusting scripts/bed_diff_basewise_summary.py -> build/scripts-3.13 copying and adjusting scripts/bed_coverage_by_interval.py -> build/scripts-3.13 copying and adjusting scripts/bed_coverage.py -> build/scripts-3.13 copying and adjusting scripts/bed_count_overlapping.py -> build/scripts-3.13 copying and adjusting scripts/bed_count_by_interval.py -> build/scripts-3.13 copying and adjusting scripts/bed_complement.py -> build/scripts-3.13 copying and adjusting scripts/bed_build_windows.py -> build/scripts-3.13 copying and adjusting scripts/bed_bigwig_profile.py -> build/scripts-3.13 copying and adjusting scripts/axt_to_maf.py -> build/scripts-3.13 copying and adjusting scripts/axt_to_lav.py -> build/scripts-3.13 copying and adjusting scripts/axt_to_fasta.py -> build/scripts-3.13 copying and adjusting scripts/axt_extract_ranges.py -> build/scripts-3.13 copying and adjusting scripts/align_print_template.py -> build/scripts-3.13 copying and adjusting scripts/aggregate_scores_in_intervals.py -> build/scripts-3.13 copying and adjusting scripts/gene_fourfold_sites.py -> build/scripts-3.13 changing mode of build/scripts-3.13/wiggle_to_simple.py from 644 to 755 changing mode of build/scripts-3.13/wiggle_to_chr_binned_array.py from 644 to 755 changing mode of build/scripts-3.13/wiggle_to_binned_array.py from 644 to 755 changing mode of build/scripts-3.13/wiggle_to_array_tree.py from 644 to 755 changing mode of build/scripts-3.13/ucsc_gene_table_to_intervals.py from 644 to 755 changing mode of build/scripts-3.13/tfloc_summary.py from 644 to 755 changing mode of build/scripts-3.13/table_filter.py from 644 to 755 changing mode of build/scripts-3.13/table_add_column.py from 644 to 755 changing mode of build/scripts-3.13/random_lines.py from 644 to 755 changing mode of build/scripts-3.13/qv_to_bqv.py from 644 to 755 changing mode of build/scripts-3.13/pretty_table.py from 644 to 755 changing mode of build/scripts-3.13/prefix_lines.py from 644 to 755 changing mode of build/scripts-3.13/out_to_chain.py from 644 to 755 changing mode of build/scripts-3.13/one_field_per_line.py from 644 to 755 changing mode of build/scripts-3.13/nib_length.py from 644 to 755 changing mode of build/scripts-3.13/nib_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.13/nib_chrom_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.13/mask_quality.py from 644 to 755 changing mode of build/scripts-3.13/maf_word_frequency.py from 644 to 755 changing mode of build/scripts-3.13/maf_truncate.py from 644 to 755 changing mode of build/scripts-3.13/maf_translate_chars.py from 644 to 755 changing mode of build/scripts-3.13/maf_to_int_seqs.py from 644 to 755 changing mode of build/scripts-3.13/maf_to_fasta.py from 644 to 755 changing mode of build/scripts-3.13/maf_to_concat_fasta.py from 644 to 755 changing mode of build/scripts-3.13/maf_to_axt.py from 644 to 755 changing mode of build/scripts-3.13/maf_tile_2bit.py from 644 to 755 changing mode of build/scripts-3.13/maf_tile_2.py from 644 to 755 changing mode of build/scripts-3.13/maf_tile.py from 644 to 755 changing mode of build/scripts-3.13/maf_thread_for_species.py from 644 to 755 changing mode of build/scripts-3.13/maf_split_by_src.py from 644 to 755 changing mode of build/scripts-3.13/maf_species_in_all_files.py from 644 to 755 changing mode of build/scripts-3.13/maf_shuffle_columns.py from 644 to 755 changing mode of build/scripts-3.13/maf_select.py from 644 to 755 changing mode of build/scripts-3.13/maf_region_coverage_by_src.py from 644 to 755 changing mode of build/scripts-3.13/maf_randomize.py from 644 to 755 changing mode of build/scripts-3.13/maf_print_scores.py from 644 to 755 changing mode of build/scripts-3.13/maf_print_chroms.py from 644 to 755 changing mode of build/scripts-3.13/maf_percent_identity.py from 644 to 755 changing mode of build/scripts-3.13/maf_percent_columns_matching.py from 644 to 755 changing mode of build/scripts-3.13/maf_mean_length_ungapped_piece.py from 644 to 755 changing mode of build/scripts-3.13/maf_mask_cpg.py from 644 to 755 changing mode of build/scripts-3.13/maf_mapping_word_frequency.py from 644 to 755 changing mode of build/scripts-3.13/maf_limit_to_species.py from 644 to 755 changing mode of build/scripts-3.13/maf_interval_alignibility.py from 644 to 755 changing mode of build/scripts-3.13/maf_gc_content.py from 644 to 755 changing mode of build/scripts-3.13/maf_gap_frequency.py from 644 to 755 changing mode of build/scripts-3.13/maf_filter_max_wc.py from 644 to 755 changing mode of build/scripts-3.13/maf_filter.py from 644 to 755 changing mode of build/scripts-3.13/maf_extract_ranges_indexed.py from 644 to 755 changing mode of build/scripts-3.13/maf_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.13/maf_extract_chrom_ranges.py from 644 to 755 changing mode of build/scripts-3.13/maf_drop_overlapping.py from 644 to 755 changing mode of build/scripts-3.13/maf_div_sites.py from 644 to 755 changing mode of build/scripts-3.13/maf_covered_regions.py from 644 to 755 changing mode of build/scripts-3.13/maf_covered_ranges.py from 644 to 755 changing mode of build/scripts-3.13/maf_count.py from 644 to 755 changing mode of build/scripts-3.13/maf_col_counts_all.py from 644 to 755 changing mode of build/scripts-3.13/maf_col_counts.py from 644 to 755 changing mode of build/scripts-3.13/maf_chunk.py from 644 to 755 changing mode of build/scripts-3.13/maf_chop.py from 644 to 755 changing mode of build/scripts-3.13/maf_build_index.py from 644 to 755 changing mode of build/scripts-3.13/mMK_bitset.py from 644 to 755 changing mode of build/scripts-3.13/lzop_build_offset_table.py from 644 to 755 changing mode of build/scripts-3.13/line_select.py from 644 to 755 changing mode of build/scripts-3.13/lav_to_maf.py from 644 to 755 changing mode of build/scripts-3.13/lav_to_axt.py from 644 to 755 changing mode of build/scripts-3.13/interval_join.py from 644 to 755 changing mode of build/scripts-3.13/interval_count_intersections.py from 644 to 755 changing mode of build/scripts-3.13/int_seqs_to_char_strings.py from 644 to 755 changing mode of build/scripts-3.13/get_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.13/find_in_sorted_file.py from 644 to 755 changing mode of build/scripts-3.13/div_snp_table_chr.py from 644 to 755 changing mode of build/scripts-3.13/bnMapper.py from 644 to 755 changing mode of build/scripts-3.13/bed_subtract_basewise.py from 644 to 755 changing mode of build/scripts-3.13/bed_rand_intersect.py from 644 to 755 changing mode of build/scripts-3.13/bed_merge_overlapping.py from 644 to 755 changing mode of build/scripts-3.13/bed_intersect_basewise.py from 644 to 755 changing mode of build/scripts-3.13/bed_intersect.py from 644 to 755 changing mode of build/scripts-3.13/bed_extend_to.py from 644 to 755 changing mode of build/scripts-3.13/bed_diff_basewise_summary.py from 644 to 755 changing mode of build/scripts-3.13/bed_coverage_by_interval.py from 644 to 755 changing mode of build/scripts-3.13/bed_coverage.py from 644 to 755 changing mode of build/scripts-3.13/bed_count_overlapping.py from 644 to 755 changing mode of build/scripts-3.13/bed_count_by_interval.py from 644 to 755 changing mode of build/scripts-3.13/bed_complement.py from 644 to 755 changing mode of build/scripts-3.13/bed_build_windows.py from 644 to 755 changing mode of build/scripts-3.13/bed_bigwig_profile.py from 644 to 755 changing mode of build/scripts-3.13/axt_to_maf.py from 644 to 755 changing mode of build/scripts-3.13/axt_to_lav.py from 644 to 755 changing mode of build/scripts-3.13/axt_to_fasta.py from 644 to 755 changing mode of build/scripts-3.13/axt_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.13/align_print_template.py from 644 to 755 changing mode of build/scripts-3.13/aggregate_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.13/gene_fourfold_sites.py from 644 to 755 installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/bx copying build/lib.linux-aarch64-cpython-313/bx/_seqmapping.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/bitset.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx creating build/bdist.linux-aarch64/wheel/bx/align copying build/lib.linux-aarch64-cpython-313/bx/align/_epo.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/align copying build/lib.linux-aarch64-cpython-313/bx/align/_core.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/align creating build/bdist.linux-aarch64/wheel/bx/align/sitemask copying build/lib.linux-aarch64-cpython-313/bx/align/sitemask/_cpg.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask copying build/lib.linux-aarch64-cpython-313/bx/align/sitemask/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask copying build/lib.linux-aarch64-cpython-313/bx/align/sitemask/core.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask copying build/lib.linux-aarch64-cpython-313/bx/align/sitemask/cpg.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask copying build/lib.linux-aarch64-cpython-313/bx/align/sitemask/quality.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask copying build/lib.linux-aarch64-cpython-313/bx/align/sitemask/sitemask_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align/sitemask creating build/bdist.linux-aarch64/wheel/bx/align/tools copying build/lib.linux-aarch64-cpython-313/bx/align/tools/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools copying build/lib.linux-aarch64-cpython-313/bx/align/tools/chop.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools copying build/lib.linux-aarch64-cpython-313/bx/align/tools/fuse.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools copying build/lib.linux-aarch64-cpython-313/bx/align/tools/thread.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools copying build/lib.linux-aarch64-cpython-313/bx/align/tools/tile.py -> build/bdist.linux-aarch64/wheel/./bx/align/tools copying build/lib.linux-aarch64-cpython-313/bx/align/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/align copying build/lib.linux-aarch64-cpython-313/bx/align/axt.py -> build/bdist.linux-aarch64/wheel/./bx/align copying build/lib.linux-aarch64-cpython-313/bx/align/core.py -> build/bdist.linux-aarch64/wheel/./bx/align copying build/lib.linux-aarch64-cpython-313/bx/align/lav.py -> build/bdist.linux-aarch64/wheel/./bx/align copying build/lib.linux-aarch64-cpython-313/bx/align/lav_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align copying build/lib.linux-aarch64-cpython-313/bx/align/maf.py -> build/bdist.linux-aarch64/wheel/./bx/align copying build/lib.linux-aarch64-cpython-313/bx/align/maf_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align copying build/lib.linux-aarch64-cpython-313/bx/align/score.py -> build/bdist.linux-aarch64/wheel/./bx/align copying build/lib.linux-aarch64-cpython-313/bx/align/score_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align copying build/lib.linux-aarch64-cpython-313/bx/align/epo.py -> build/bdist.linux-aarch64/wheel/./bx/align copying build/lib.linux-aarch64-cpython-313/bx/align/epo_tests.py -> build/bdist.linux-aarch64/wheel/./bx/align creating build/bdist.linux-aarch64/wheel/bx/arrays copying build/lib.linux-aarch64-cpython-313/bx/arrays/wiggle.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/arrays copying build/lib.linux-aarch64-cpython-313/bx/arrays/bed.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/arrays copying build/lib.linux-aarch64-cpython-313/bx/arrays/array_tree.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/arrays copying build/lib.linux-aarch64-cpython-313/bx/arrays/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/arrays copying build/lib.linux-aarch64-cpython-313/bx/arrays/array_tree_tests.py -> build/bdist.linux-aarch64/wheel/./bx/arrays creating build/bdist.linux-aarch64/wheel/bx/bbi copying build/lib.linux-aarch64-cpython-313/bx/bbi/bigbed_file.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi copying build/lib.linux-aarch64-cpython-313/bx/bbi/bigwig_file.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi copying build/lib.linux-aarch64-cpython-313/bx/bbi/bbi_file.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi copying build/lib.linux-aarch64-cpython-313/bx/bbi/cirtree_file.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi copying build/lib.linux-aarch64-cpython-313/bx/bbi/bpt_file.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/bbi copying build/lib.linux-aarch64-cpython-313/bx/bbi/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/bbi copying build/lib.linux-aarch64-cpython-313/bx/bbi/bigwig_tests.py -> build/bdist.linux-aarch64/wheel/./bx/bbi creating build/bdist.linux-aarch64/wheel/bx/cookbook copying build/lib.linux-aarch64-cpython-313/bx/cookbook/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/cookbook copying build/lib.linux-aarch64-cpython-313/bx/cookbook/attribute.py -> build/bdist.linux-aarch64/wheel/./bx/cookbook copying build/lib.linux-aarch64-cpython-313/bx/cookbook/doc_optparse.py -> build/bdist.linux-aarch64/wheel/./bx/cookbook creating build/bdist.linux-aarch64/wheel/bx/intervals copying build/lib.linux-aarch64-cpython-313/bx/intervals/cluster.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/intervals copying build/lib.linux-aarch64-cpython-313/bx/intervals/intersection.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/intervals creating build/bdist.linux-aarch64/wheel/bx/intervals/operations copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/base_coverage.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/complement.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/concat.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/coverage.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/find_clusters.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/intersect.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/join.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/merge.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/quicksect.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations copying build/lib.linux-aarch64-cpython-313/bx/intervals/operations/subtract.py -> build/bdist.linux-aarch64/wheel/./bx/intervals/operations copying build/lib.linux-aarch64-cpython-313/bx/intervals/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/intervals copying build/lib.linux-aarch64-cpython-313/bx/intervals/cluster_tests.py -> build/bdist.linux-aarch64/wheel/./bx/intervals copying build/lib.linux-aarch64-cpython-313/bx/intervals/intersection_tests.py -> build/bdist.linux-aarch64/wheel/./bx/intervals copying build/lib.linux-aarch64-cpython-313/bx/intervals/io.py -> build/bdist.linux-aarch64/wheel/./bx/intervals copying build/lib.linux-aarch64-cpython-313/bx/intervals/random_intervals.py -> build/bdist.linux-aarch64/wheel/./bx/intervals creating build/bdist.linux-aarch64/wheel/bx/intseq copying build/lib.linux-aarch64-cpython-313/bx/intseq/ngramcount.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/intseq copying build/lib.linux-aarch64-cpython-313/bx/intseq/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/intseq creating build/bdist.linux-aarch64/wheel/bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/_seekbzip2.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/bgzf.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/bgzf_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/binary_file.py -> build/bdist.linux-aarch64/wheel/./bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/cdb.py -> build/bdist.linux-aarch64/wheel/./bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/cdb_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/filecache.py -> build/bdist.linux-aarch64/wheel/./bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/filecache_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/readlengths.py -> build/bdist.linux-aarch64/wheel/./bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/seekbzip2.py -> build/bdist.linux-aarch64/wheel/./bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/seekbzip2_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/seeklzop.py -> build/bdist.linux-aarch64/wheel/./bx/misc copying build/lib.linux-aarch64-cpython-313/bx/misc/seeklzop_tests.py -> build/bdist.linux-aarch64/wheel/./bx/misc creating build/bdist.linux-aarch64/wheel/bx/motif copying build/lib.linux-aarch64-cpython-313/bx/motif/_pwm.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/motif creating build/bdist.linux-aarch64/wheel/bx/motif/io copying build/lib.linux-aarch64-cpython-313/bx/motif/io/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/motif/io copying build/lib.linux-aarch64-cpython-313/bx/motif/io/transfac.py -> build/bdist.linux-aarch64/wheel/./bx/motif/io copying build/lib.linux-aarch64-cpython-313/bx/motif/io/transfac_tests.py -> build/bdist.linux-aarch64/wheel/./bx/motif/io creating build/bdist.linux-aarch64/wheel/bx/motif/logo copying build/lib.linux-aarch64-cpython-313/bx/motif/logo/template.ps -> build/bdist.linux-aarch64/wheel/./bx/motif/logo copying build/lib.linux-aarch64-cpython-313/bx/motif/logo/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/motif/logo copying build/lib.linux-aarch64-cpython-313/bx/motif/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/motif copying build/lib.linux-aarch64-cpython-313/bx/motif/pwm.py -> build/bdist.linux-aarch64/wheel/./bx/motif copying build/lib.linux-aarch64-cpython-313/bx/motif/pwm_tests.py -> build/bdist.linux-aarch64/wheel/./bx/motif creating build/bdist.linux-aarch64/wheel/bx/phylo copying build/lib.linux-aarch64-cpython-313/bx/phylo/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/phylo copying build/lib.linux-aarch64-cpython-313/bx/phylo/newick.py -> build/bdist.linux-aarch64/wheel/./bx/phylo copying build/lib.linux-aarch64-cpython-313/bx/phylo/newick_tests.py -> build/bdist.linux-aarch64/wheel/./bx/phylo copying build/lib.linux-aarch64-cpython-313/bx/phylo/phast.py -> build/bdist.linux-aarch64/wheel/./bx/phylo copying build/lib.linux-aarch64-cpython-313/bx/phylo/phast_tests.py -> build/bdist.linux-aarch64/wheel/./bx/phylo creating build/bdist.linux-aarch64/wheel/bx/pwm copying build/lib.linux-aarch64-cpython-313/bx/pwm/_position_weight_matrix.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/pwm copying build/lib.linux-aarch64-cpython-313/bx/pwm/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/pwm copying build/lib.linux-aarch64-cpython-313/bx/pwm/pwm_tests.py -> build/bdist.linux-aarch64/wheel/./bx/pwm copying build/lib.linux-aarch64-cpython-313/bx/pwm/bed_score_aligned_pwm.py -> build/bdist.linux-aarch64/wheel/./bx/pwm copying build/lib.linux-aarch64-cpython-313/bx/pwm/bed_score_aligned_string.py -> build/bdist.linux-aarch64/wheel/./bx/pwm copying build/lib.linux-aarch64-cpython-313/bx/pwm/maf_select_motifs.py -> build/bdist.linux-aarch64/wheel/./bx/pwm copying build/lib.linux-aarch64-cpython-313/bx/pwm/position_weight_matrix.py -> build/bdist.linux-aarch64/wheel/./bx/pwm copying build/lib.linux-aarch64-cpython-313/bx/pwm/pwm_score_motifs.py -> build/bdist.linux-aarch64/wheel/./bx/pwm copying build/lib.linux-aarch64-cpython-313/bx/pwm/pwm_score_positions.py -> build/bdist.linux-aarch64/wheel/./bx/pwm copying build/lib.linux-aarch64-cpython-313/bx/pwm/pwm_score_maf.py -> build/bdist.linux-aarch64/wheel/./bx/pwm creating build/bdist.linux-aarch64/wheel/bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/_twobit.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/_nib.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/core.py -> build/bdist.linux-aarch64/wheel/./bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/fasta.py -> build/bdist.linux-aarch64/wheel/./bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/fasta_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/nib.py -> build/bdist.linux-aarch64/wheel/./bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/nib_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/qdna.py -> build/bdist.linux-aarch64/wheel/./bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/qdna_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/seq.py -> build/bdist.linux-aarch64/wheel/./bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/seq_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/twobit.py -> build/bdist.linux-aarch64/wheel/./bx/seq copying build/lib.linux-aarch64-cpython-313/bx/seq/twobit_tests.py -> build/bdist.linux-aarch64/wheel/./bx/seq creating build/bdist.linux-aarch64/wheel/bx/tabular copying build/lib.linux-aarch64-cpython-313/bx/tabular/__init__.py -> build/bdist.linux-aarch64/wheel/./bx/tabular copying build/lib.linux-aarch64-cpython-313/bx/tabular/io.py -> build/bdist.linux-aarch64/wheel/./bx/tabular copying build/lib.linux-aarch64-cpython-313/bx/__init__.py -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/binned_array.py -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/binned_array_tests.py -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/bitset_builders.py -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/bitset_tests.py -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/bitset_utils.py -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/filter.py -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/gene_reader.py -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/interval_index_file_tests.py -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/seqmapping.py -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/seqmapping_tests.py -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/wiggle.py -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/wiggle_tests.py -> build/bdist.linux-aarch64/wheel/./bx copying build/lib.linux-aarch64-cpython-313/bx/interval_index_file.py -> build/bdist.linux-aarch64/wheel/./bx creating build/bdist.linux-aarch64/wheel/bx_extras copying build/lib.linux-aarch64-cpython-313/bx_extras/__init__.py -> build/bdist.linux-aarch64/wheel/./bx_extras copying build/lib.linux-aarch64-cpython-313/bx_extras/fpconst.py -> build/bdist.linux-aarch64/wheel/./bx_extras copying build/lib.linux-aarch64-cpython-313/bx_extras/fpconst_tests.py -> build/bdist.linux-aarch64/wheel/./bx_extras copying build/lib.linux-aarch64-cpython-313/bx_extras/lrucache.py -> build/bdist.linux-aarch64/wheel/./bx_extras copying build/lib.linux-aarch64-cpython-313/bx_extras/pstat.py -> build/bdist.linux-aarch64/wheel/./bx_extras copying build/lib.linux-aarch64-cpython-313/bx_extras/stats.py -> build/bdist.linux-aarch64/wheel/./bx_extras running install_egg_info running egg_info creating lib/bx_python.egg-info writing lib/bx_python.egg-info/PKG-INFO writing dependency_links to lib/bx_python.egg-info/dependency_links.txt writing requirements to lib/bx_python.egg-info/requires.txt writing top-level names to lib/bx_python.egg-info/top_level.txt writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' Copying lib/bx_python.egg-info to build/bdist.linux-aarch64/wheel/./bx_python-0.13.0.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/gene_fourfold_sites.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/aggregate_scores_in_intervals.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/align_print_template.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/axt_extract_ranges.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/axt_to_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/axt_to_lav.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/axt_to_maf.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_bigwig_profile.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_build_windows.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_complement.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_count_by_interval.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_count_overlapping.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_coverage.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_coverage_by_interval.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_diff_basewise_summary.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_extend_to.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_intersect.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_intersect_basewise.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_merge_overlapping.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_rand_intersect.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bed_subtract_basewise.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/bnMapper.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/div_snp_table_chr.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/find_in_sorted_file.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/get_scores_in_intervals.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/int_seqs_to_char_strings.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/interval_count_intersections.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/interval_join.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/lav_to_axt.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/lav_to_maf.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/line_select.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/lzop_build_offset_table.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/mMK_bitset.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_build_index.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_chop.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_chunk.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_col_counts.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_col_counts_all.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_count.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_covered_ranges.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_covered_regions.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_div_sites.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_drop_overlapping.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_extract_chrom_ranges.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_extract_ranges.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_extract_ranges_indexed.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_filter.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_filter_max_wc.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_gap_frequency.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_gc_content.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_interval_alignibility.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_limit_to_species.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_mapping_word_frequency.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_mask_cpg.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_mean_length_ungapped_piece.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_percent_columns_matching.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_percent_identity.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_print_chroms.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_print_scores.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_randomize.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_region_coverage_by_src.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_select.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_shuffle_columns.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_species_in_all_files.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_split_by_src.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_thread_for_species.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_tile.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_tile_2.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_tile_2bit.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_to_axt.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_to_concat_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_to_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_to_int_seqs.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_translate_chars.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_truncate.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/maf_word_frequency.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/mask_quality.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/nib_chrom_intervals_to_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/nib_intervals_to_fasta.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/nib_length.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/one_field_per_line.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/out_to_chain.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/prefix_lines.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/pretty_table.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/qv_to_bqv.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/random_lines.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/table_add_column.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/table_filter.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/tfloc_summary.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/ucsc_gene_table_to_intervals.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/wiggle_to_array_tree.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/wiggle_to_binned_array.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/wiggle_to_chr_binned_array.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts copying build/scripts-3.13/wiggle_to_simple.py -> build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/gene_fourfold_sites.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/aggregate_scores_in_intervals.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/align_print_template.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/axt_extract_ranges.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/axt_to_fasta.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/axt_to_lav.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/axt_to_maf.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_bigwig_profile.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_build_windows.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_complement.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_count_by_interval.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_count_overlapping.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_coverage.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_coverage_by_interval.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_diff_basewise_summary.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_extend_to.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_intersect.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_intersect_basewise.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_merge_overlapping.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_rand_intersect.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bed_subtract_basewise.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/bnMapper.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/div_snp_table_chr.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/find_in_sorted_file.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/get_scores_in_intervals.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/int_seqs_to_char_strings.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/interval_count_intersections.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/interval_join.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/lav_to_axt.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/lav_to_maf.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/line_select.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/lzop_build_offset_table.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/mMK_bitset.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_build_index.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_chop.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_chunk.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_col_counts.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_col_counts_all.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_count.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_covered_ranges.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_covered_regions.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_div_sites.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_drop_overlapping.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_extract_chrom_ranges.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_extract_ranges.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_extract_ranges_indexed.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_filter.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_filter_max_wc.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_gap_frequency.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_gc_content.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_interval_alignibility.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_limit_to_species.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_mapping_word_frequency.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_mask_cpg.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_mean_length_ungapped_piece.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_percent_columns_matching.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_percent_identity.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_print_chroms.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_print_scores.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_randomize.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_region_coverage_by_src.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_select.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_shuffle_columns.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_species_in_all_files.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_split_by_src.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_thread_for_species.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_tile.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_tile_2.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_tile_2bit.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_to_axt.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_to_concat_fasta.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_to_fasta.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_to_int_seqs.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_translate_chars.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_truncate.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/maf_word_frequency.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/mask_quality.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/nib_chrom_intervals_to_fasta.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/nib_intervals_to_fasta.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/nib_length.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/one_field_per_line.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/out_to_chain.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/prefix_lines.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/pretty_table.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/qv_to_bqv.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/random_lines.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/table_add_column.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/table_filter.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/tfloc_summary.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/ucsc_gene_table_to_intervals.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/wiggle_to_array_tree.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/wiggle_to_binned_array.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/wiggle_to_chr_binned_array.py to 755 changing mode of build/bdist.linux-aarch64/wheel/bx_python-0.13.0.data/scripts/wiggle_to_simple.py to 755 creating build/bdist.linux-aarch64/wheel/bx_python-0.13.0.dist-info/WHEEL creating '/build/reproducible-path/python-bx-0.13.0/.pybuild/cpython3_3.13_bx-python/.tmp-qig7abx7/bx_python-0.13.0-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'bx/__init__.py' adding 'bx/_seqmapping.cpython-313-aarch64-linux-gnu.so' adding 'bx/binned_array.py' adding 'bx/binned_array_tests.py' adding 'bx/bitset.cpython-313-aarch64-linux-gnu.so' adding 'bx/bitset_builders.py' adding 'bx/bitset_tests.py' adding 'bx/bitset_utils.py' adding 'bx/filter.py' adding 'bx/gene_reader.py' adding 'bx/interval_index_file.py' adding 'bx/interval_index_file_tests.py' adding 'bx/seqmapping.py' adding 'bx/seqmapping_tests.py' adding 'bx/wiggle.py' adding 'bx/wiggle_tests.py' adding 'bx/align/__init__.py' adding 'bx/align/_core.cpython-313-aarch64-linux-gnu.so' adding 'bx/align/_epo.cpython-313-aarch64-linux-gnu.so' adding 'bx/align/axt.py' adding 'bx/align/core.py' adding 'bx/align/epo.py' adding 'bx/align/epo_tests.py' adding 'bx/align/lav.py' adding 'bx/align/lav_tests.py' adding 'bx/align/maf.py' adding 'bx/align/maf_tests.py' adding 'bx/align/score.py' adding 'bx/align/score_tests.py' adding 'bx/align/sitemask/__init__.py' adding 'bx/align/sitemask/_cpg.cpython-313-aarch64-linux-gnu.so' adding 'bx/align/sitemask/core.py' adding 'bx/align/sitemask/cpg.py' adding 'bx/align/sitemask/quality.py' adding 'bx/align/sitemask/sitemask_tests.py' adding 'bx/align/tools/__init__.py' adding 'bx/align/tools/chop.py' adding 'bx/align/tools/fuse.py' adding 'bx/align/tools/thread.py' adding 'bx/align/tools/tile.py' adding 'bx/arrays/__init__.py' adding 'bx/arrays/array_tree.cpython-313-aarch64-linux-gnu.so' adding 'bx/arrays/array_tree_tests.py' adding 'bx/arrays/bed.cpython-313-aarch64-linux-gnu.so' adding 'bx/arrays/wiggle.cpython-313-aarch64-linux-gnu.so' adding 'bx/bbi/__init__.py' adding 'bx/bbi/bbi_file.cpython-313-aarch64-linux-gnu.so' adding 'bx/bbi/bigbed_file.cpython-313-aarch64-linux-gnu.so' adding 'bx/bbi/bigwig_file.cpython-313-aarch64-linux-gnu.so' adding 'bx/bbi/bigwig_tests.py' adding 'bx/bbi/bpt_file.cpython-313-aarch64-linux-gnu.so' adding 'bx/bbi/cirtree_file.cpython-313-aarch64-linux-gnu.so' adding 'bx/cookbook/__init__.py' adding 'bx/cookbook/attribute.py' adding 'bx/cookbook/doc_optparse.py' adding 'bx/intervals/__init__.py' adding 'bx/intervals/cluster.cpython-313-aarch64-linux-gnu.so' adding 'bx/intervals/cluster_tests.py' adding 'bx/intervals/intersection.cpython-313-aarch64-linux-gnu.so' adding 'bx/intervals/intersection_tests.py' adding 'bx/intervals/io.py' adding 'bx/intervals/random_intervals.py' adding 'bx/intervals/operations/__init__.py' adding 'bx/intervals/operations/base_coverage.py' adding 'bx/intervals/operations/complement.py' adding 'bx/intervals/operations/concat.py' adding 'bx/intervals/operations/coverage.py' adding 'bx/intervals/operations/find_clusters.py' adding 'bx/intervals/operations/intersect.py' adding 'bx/intervals/operations/join.py' adding 'bx/intervals/operations/merge.py' adding 'bx/intervals/operations/quicksect.py' adding 'bx/intervals/operations/subtract.py' adding 'bx/intseq/__init__.py' adding 'bx/intseq/ngramcount.cpython-313-aarch64-linux-gnu.so' adding 'bx/misc/__init__.py' adding 'bx/misc/_seekbzip2.cpython-313-aarch64-linux-gnu.so' adding 'bx/misc/bgzf.cpython-313-aarch64-linux-gnu.so' adding 'bx/misc/bgzf_tests.py' adding 'bx/misc/binary_file.py' adding 'bx/misc/cdb.py' adding 'bx/misc/cdb_tests.py' adding 'bx/misc/filecache.py' adding 'bx/misc/filecache_tests.py' adding 'bx/misc/readlengths.py' adding 'bx/misc/seekbzip2.py' adding 'bx/misc/seekbzip2_tests.py' adding 'bx/misc/seeklzop.py' adding 'bx/misc/seeklzop_tests.py' adding 'bx/motif/__init__.py' adding 'bx/motif/_pwm.cpython-313-aarch64-linux-gnu.so' adding 'bx/motif/pwm.py' adding 'bx/motif/pwm_tests.py' adding 'bx/motif/io/__init__.py' adding 'bx/motif/io/transfac.py' adding 'bx/motif/io/transfac_tests.py' adding 'bx/motif/logo/__init__.py' adding 'bx/motif/logo/template.ps' adding 'bx/phylo/__init__.py' adding 'bx/phylo/newick.py' adding 'bx/phylo/newick_tests.py' adding 'bx/phylo/phast.py' adding 'bx/phylo/phast_tests.py' adding 'bx/pwm/__init__.py' adding 'bx/pwm/_position_weight_matrix.cpython-313-aarch64-linux-gnu.so' adding 'bx/pwm/bed_score_aligned_pwm.py' adding 'bx/pwm/bed_score_aligned_string.py' adding 'bx/pwm/maf_select_motifs.py' adding 'bx/pwm/position_weight_matrix.py' adding 'bx/pwm/pwm_score_maf.py' adding 'bx/pwm/pwm_score_motifs.py' adding 'bx/pwm/pwm_score_positions.py' adding 'bx/pwm/pwm_tests.py' adding 'bx/seq/__init__.py' adding 'bx/seq/_nib.cpython-313-aarch64-linux-gnu.so' adding 'bx/seq/_twobit.cpython-313-aarch64-linux-gnu.so' adding 'bx/seq/core.py' adding 'bx/seq/fasta.py' adding 'bx/seq/fasta_tests.py' adding 'bx/seq/nib.py' adding 'bx/seq/nib_tests.py' adding 'bx/seq/qdna.py' adding 'bx/seq/qdna_tests.py' adding 'bx/seq/seq.py' adding 'bx/seq/seq_tests.py' adding 'bx/seq/twobit.py' adding 'bx/seq/twobit_tests.py' adding 'bx/tabular/__init__.py' adding 'bx/tabular/io.py' adding 'bx_extras/__init__.py' adding 'bx_extras/fpconst.py' adding 'bx_extras/fpconst_tests.py' adding 'bx_extras/lrucache.py' adding 'bx_extras/pstat.py' adding 'bx_extras/stats.py' adding 'bx_python-0.13.0.data/scripts/aggregate_scores_in_intervals.py' adding 'bx_python-0.13.0.data/scripts/align_print_template.py' adding 'bx_python-0.13.0.data/scripts/axt_extract_ranges.py' adding 'bx_python-0.13.0.data/scripts/axt_to_fasta.py' adding 'bx_python-0.13.0.data/scripts/axt_to_lav.py' adding 'bx_python-0.13.0.data/scripts/axt_to_maf.py' adding 'bx_python-0.13.0.data/scripts/bed_bigwig_profile.py' adding 'bx_python-0.13.0.data/scripts/bed_build_windows.py' adding 'bx_python-0.13.0.data/scripts/bed_complement.py' adding 'bx_python-0.13.0.data/scripts/bed_count_by_interval.py' adding 'bx_python-0.13.0.data/scripts/bed_count_overlapping.py' adding 'bx_python-0.13.0.data/scripts/bed_coverage.py' adding 'bx_python-0.13.0.data/scripts/bed_coverage_by_interval.py' adding 'bx_python-0.13.0.data/scripts/bed_diff_basewise_summary.py' adding 'bx_python-0.13.0.data/scripts/bed_extend_to.py' adding 'bx_python-0.13.0.data/scripts/bed_intersect.py' adding 'bx_python-0.13.0.data/scripts/bed_intersect_basewise.py' adding 'bx_python-0.13.0.data/scripts/bed_merge_overlapping.py' adding 'bx_python-0.13.0.data/scripts/bed_rand_intersect.py' adding 'bx_python-0.13.0.data/scripts/bed_subtract_basewise.py' adding 'bx_python-0.13.0.data/scripts/bnMapper.py' adding 'bx_python-0.13.0.data/scripts/div_snp_table_chr.py' adding 'bx_python-0.13.0.data/scripts/find_in_sorted_file.py' adding 'bx_python-0.13.0.data/scripts/gene_fourfold_sites.py' adding 'bx_python-0.13.0.data/scripts/get_scores_in_intervals.py' adding 'bx_python-0.13.0.data/scripts/int_seqs_to_char_strings.py' adding 'bx_python-0.13.0.data/scripts/interval_count_intersections.py' adding 'bx_python-0.13.0.data/scripts/interval_join.py' adding 'bx_python-0.13.0.data/scripts/lav_to_axt.py' adding 'bx_python-0.13.0.data/scripts/lav_to_maf.py' adding 'bx_python-0.13.0.data/scripts/line_select.py' adding 'bx_python-0.13.0.data/scripts/lzop_build_offset_table.py' adding 'bx_python-0.13.0.data/scripts/mMK_bitset.py' adding 'bx_python-0.13.0.data/scripts/maf_build_index.py' adding 'bx_python-0.13.0.data/scripts/maf_chop.py' adding 'bx_python-0.13.0.data/scripts/maf_chunk.py' adding 'bx_python-0.13.0.data/scripts/maf_col_counts.py' adding 'bx_python-0.13.0.data/scripts/maf_col_counts_all.py' adding 'bx_python-0.13.0.data/scripts/maf_count.py' adding 'bx_python-0.13.0.data/scripts/maf_covered_ranges.py' adding 'bx_python-0.13.0.data/scripts/maf_covered_regions.py' adding 'bx_python-0.13.0.data/scripts/maf_div_sites.py' adding 'bx_python-0.13.0.data/scripts/maf_drop_overlapping.py' adding 'bx_python-0.13.0.data/scripts/maf_extract_chrom_ranges.py' adding 'bx_python-0.13.0.data/scripts/maf_extract_ranges.py' adding 'bx_python-0.13.0.data/scripts/maf_extract_ranges_indexed.py' adding 'bx_python-0.13.0.data/scripts/maf_filter.py' adding 'bx_python-0.13.0.data/scripts/maf_filter_max_wc.py' adding 'bx_python-0.13.0.data/scripts/maf_gap_frequency.py' adding 'bx_python-0.13.0.data/scripts/maf_gc_content.py' adding 'bx_python-0.13.0.data/scripts/maf_interval_alignibility.py' adding 'bx_python-0.13.0.data/scripts/maf_limit_to_species.py' adding 'bx_python-0.13.0.data/scripts/maf_mapping_word_frequency.py' adding 'bx_python-0.13.0.data/scripts/maf_mask_cpg.py' adding 'bx_python-0.13.0.data/scripts/maf_mean_length_ungapped_piece.py' adding 'bx_python-0.13.0.data/scripts/maf_percent_columns_matching.py' adding 'bx_python-0.13.0.data/scripts/maf_percent_identity.py' adding 'bx_python-0.13.0.data/scripts/maf_print_chroms.py' adding 'bx_python-0.13.0.data/scripts/maf_print_scores.py' adding 'bx_python-0.13.0.data/scripts/maf_randomize.py' adding 'bx_python-0.13.0.data/scripts/maf_region_coverage_by_src.py' adding 'bx_python-0.13.0.data/scripts/maf_select.py' adding 'bx_python-0.13.0.data/scripts/maf_shuffle_columns.py' adding 'bx_python-0.13.0.data/scripts/maf_species_in_all_files.py' adding 'bx_python-0.13.0.data/scripts/maf_split_by_src.py' adding 'bx_python-0.13.0.data/scripts/maf_thread_for_species.py' adding 'bx_python-0.13.0.data/scripts/maf_tile.py' adding 'bx_python-0.13.0.data/scripts/maf_tile_2.py' adding 'bx_python-0.13.0.data/scripts/maf_tile_2bit.py' adding 'bx_python-0.13.0.data/scripts/maf_to_axt.py' adding 'bx_python-0.13.0.data/scripts/maf_to_concat_fasta.py' adding 'bx_python-0.13.0.data/scripts/maf_to_fasta.py' adding 'bx_python-0.13.0.data/scripts/maf_to_int_seqs.py' adding 'bx_python-0.13.0.data/scripts/maf_translate_chars.py' adding 'bx_python-0.13.0.data/scripts/maf_truncate.py' adding 'bx_python-0.13.0.data/scripts/maf_word_frequency.py' adding 'bx_python-0.13.0.data/scripts/mask_quality.py' adding 'bx_python-0.13.0.data/scripts/nib_chrom_intervals_to_fasta.py' adding 'bx_python-0.13.0.data/scripts/nib_intervals_to_fasta.py' adding 'bx_python-0.13.0.data/scripts/nib_length.py' adding 'bx_python-0.13.0.data/scripts/one_field_per_line.py' adding 'bx_python-0.13.0.data/scripts/out_to_chain.py' adding 'bx_python-0.13.0.data/scripts/prefix_lines.py' adding 'bx_python-0.13.0.data/scripts/pretty_table.py' adding 'bx_python-0.13.0.data/scripts/qv_to_bqv.py' adding 'bx_python-0.13.0.data/scripts/random_lines.py' adding 'bx_python-0.13.0.data/scripts/table_add_column.py' adding 'bx_python-0.13.0.data/scripts/table_filter.py' adding 'bx_python-0.13.0.data/scripts/tfloc_summary.py' adding 'bx_python-0.13.0.data/scripts/ucsc_gene_table_to_intervals.py' adding 'bx_python-0.13.0.data/scripts/wiggle_to_array_tree.py' adding 'bx_python-0.13.0.data/scripts/wiggle_to_binned_array.py' adding 'bx_python-0.13.0.data/scripts/wiggle_to_chr_binned_array.py' adding 'bx_python-0.13.0.data/scripts/wiggle_to_simple.py' adding 'bx_python-0.13.0.dist-info/licenses/LICENSE' adding 'bx_python-0.13.0.dist-info/METADATA' adding 'bx_python-0.13.0.dist-info/WHEEL' adding 'bx_python-0.13.0.dist-info/top_level.txt' adding 'bx_python-0.13.0.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built bx_python-0.13.0-cp313-cp313-linux_aarch64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-bx-0.13.0/.pybuild/cpython3_3.13_bx-python/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/python-bx-0.13.0/.pybuild/cpython3_3.13_bx-python/build configfile: pytest.ini plugins: cython-0.3.1, typeguard-4.4.4 collected 139 items bx/align/epo_tests.py ..... [ 3%] bx/align/lav_tests.py . [ 4%] bx/align/maf_tests.py ........ [ 10%] bx/align/score_tests.py ..... [ 13%] bx/align/sitemask/sitemask_tests.py ... [ 15%] bx/align/tools/fuse.py . [ 16%] bx/align/tools/thread.py . [ 17%] bx/arrays/array_tree_tests.py ...... [ 21%] bx/bbi/bigwig_tests.py ........................... [ 41%] bx/binned_array_tests.py .... [ 43%] bx/bitset_tests.py .................. [ 56%] bx/interval_index_file_tests.py ... [ 58%] bx/intervals/cluster_tests.py ............. [ 68%] bx/intervals/intersection_tests.py ............. [ 77%] bx/intervals/io.py .. [ 79%] bx/misc/bgzf_tests.py . [ 79%] bx/misc/cdb_tests.py . [ 80%] bx/motif/io/transfac_tests.py . [ 81%] bx/motif/pwm_tests.py ... [ 83%] bx/phylo/newick_tests.py ........ [ 89%] bx/phylo/phast_tests.py . [ 89%] bx/pwm/pwm_tests.py . [ 90%] bx/seq/fasta_tests.py . [ 91%] bx/seq/nib_tests.py . [ 92%] bx/seq/qdna_tests.py . [ 92%] bx/seq/seq_tests.py .... [ 95%] bx/seq/twobit_tests.py ... [ 97%] bx/wiggle_tests.py .. [ 99%] bx_extras/fpconst_tests.py . [100%] =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1533 /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1533: PytestConfigWarning: No files were found in testpaths; consider removing or adjusting your testpaths configuration. Searching recursively from the current directory instead. self.args, self.args_source = self._decide_args( bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 10 mean n/a n/a n/a n/a -0.164968 -0.194169 -0.0533029 0.00390226 -0.00226906 -0.0365958\n] bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 20000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a -0.163546 -0.272118 -0.127111 -0.116169 0.0202627 -0.0243522 0.0349913 -0.0054408 -0.00101548 -0.0307148 -0.0374406 -0.0024669 -0.034042 -0.0343892 -0.0199075 -0.0406878 -0.0322236 -0.080479 -0.235991 -0.0897865 -0.041593 0.019942 -0.0608448 0.0144338 -0.0348468 0.0195101 -0.0555526 -0.0892809 0.011672 -0.173894 -0.0849444 0.0718796 0.0608432 0.0313183 0.0439315 -0.0242363 0.03288 0.0318241 0.122005 0.0879138 0.00102565 0.0334753 -0.00263047 -0.103023 -0.0275437 0.0958326 0.0147229 -0.0629772 0.00541821 0.062474 0.069069 -0.0389339 0.0206174 0.0278476 -0.0182009 0.00568736 0.000397305 0.13104 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0.094874 0.11689 0.11689 0.105882 0.105882 -0.697695 0.094874 0.094874 0.105882 0.094874 0.105882 0.11689 -0.829788 0.094874 0.105882 -0.906843 0.105882 0.105882 0.105882 0.094874 0.105882 0.105882 0.094874 0.094874 0.11689 0.105882 0.105882 -0.829788 0.094874 0.105882 0.11689 -0.71971 0.105882 0.103756 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 -0.835144 0.090622 0.090622 -0.901269 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 -0.818609 0.090622 0.090622 0.090622\n] /build/reproducible-path/python-bx-0.13.0/.pybuild/cpython3_3.13_bx-python/build/bx/bbi/bigwig_tests.py:109: RuntimeWarning: invalid value encountered in divide assert allclose(sd.sum_data / sd.valid_count, values) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 139 passed, 6 warnings in 4.00s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bx/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/python-bx-0.13.0' dh_python3 --shebang=/usr/bin/python3 I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/aggregate_scores_in_intervals.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/align_print_template.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/axt_extract_ranges.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/axt_to_fasta.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/axt_to_lav.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/axt_to_maf.py I: 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dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/one_field_per_line.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/out_to_chain.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/prefix_lines.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/pretty_table.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/qv_to_bqv.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/random_lines.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/table_add_column.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/table_filter.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/tfloc_summary.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/ucsc_gene_table_to_intervals.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_array_tree.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_binned_array.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_chr_binned_array.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_simple.py dh_numpy3 Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. make[1]: Leaving directory '/build/reproducible-path/python-bx-0.13.0' dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bx' in '../python3-bx_0.13.0-2_arm64.deb'. dpkg-deb: building package 'python3-bx-dbgsym' in '../python3-bx-dbgsym_0.13.0-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-bx_0.13.0-2_arm64.buildinfo dpkg-genchanges --build=binary -O../python-bx_0.13.0-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3942477 and its subdirectories I: Current time: Sat Nov 14 05:22:10 -12 2026 I: pbuilder-time-stamp: 1794676930 Sun Oct 12 10:59:11 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Sun Oct 12 10:59:11 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Sun Oct 12 11:01:53 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Sun Oct 12 11:01:54 UTC 2025 I: python-bx_0.13.0-2_arm64.changes: Format: 1.8 Date: Mon, 06 Oct 2025 16:40:00 +0200 Source: python-bx Binary: python3-bx python3-bx-dbgsym Architecture: arm64 Version: 0.13.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Santiago Vila Description: python3-bx - library to manage genomic data and its alignment Closes: 1116850 Changes: python-bx (0.13.0-2) unstable; urgency=medium . * Team upload. * Drop from python3-numpy in BD. Closes: #1116850. * d/control: Add build-dependency on python3-numpy-dev (lintian error). * d/control: Drop "Rules-Requires-Root: no", it's the default. * d/control: Drop "Priority: optional", it's the default. * d/control: Update standards-version. Checksums-Sha1: a4e5650f995da830905461f69d42bb08d02421e5 6642 python-bx_0.13.0-2_arm64.buildinfo e0525e1c1f4d3ae33be02dafe49b7c08c0baaa38 3703712 python3-bx-dbgsym_0.13.0-2_arm64.deb c82f23f666616fa2bfa9713e55fa7b96a5a231a1 640748 python3-bx_0.13.0-2_arm64.deb Checksums-Sha256: 26638b09ea2c08b6218d6db7b5854fbea51a10ae2fc0fbd39eed90810b738cca 6642 python-bx_0.13.0-2_arm64.buildinfo 9ae27c733e42ad9b48a57f20763434ee22cb8f2103d0aea983471b4b154cc09e 3703712 python3-bx-dbgsym_0.13.0-2_arm64.deb 58ed581b881d38227f53a8ac9276575f59594143173c10ca30228f6510e18959 640748 python3-bx_0.13.0-2_arm64.deb Files: 3877987fd2fdaf6c715728bc0cb75f34 6642 python optional python-bx_0.13.0-2_arm64.buildinfo a35626ecd9360a9fc5aff970aa5d075d 3703712 debug optional python3-bx-dbgsym_0.13.0-2_arm64.deb 0458408529768821088e9c27677184a0 640748 python optional python3-bx_0.13.0-2_arm64.deb Sun Oct 12 11:01:55 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_3-119433.service; invocation ID: b2dd37a60219499184f015c209c81992 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.or47X2SU/python-bx_0.13.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.or47X2SU/python-bx_0.13.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.or47X2SU/python-bx_0.13.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.or47X2SU/b1/python-bx_0.13.0-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.or47X2SU/b2/python-bx_0.13.0-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 197ms CPU time consumed: 173ms Memory peak: 17.7M (swap: 0B) Sun Oct 12 11:01:55 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sun Oct 12 11:01:55 UTC 2025 I: python-bx from forky built successfully and reproducibly on arm64. Sun Oct 12 11:01:56 UTC 2025 I: Removing signed python-bx_0.13.0-2_arm64.buildinfo.asc files: removed './b1/python-bx_0.13.0-2_arm64.buildinfo.asc' removed './b2/python-bx_0.13.0-2_arm64.buildinfo.asc'