Thu Sep 25 18:14:21 UTC 2025 I: starting to build python-deeptoolsintervals/forky/arm64 on jenkins on '2025-09-25 18:14' Thu Sep 25 18:14:21 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_8/90561/console.log Thu Sep 25 18:14:21 UTC 2025 I: Downloading source for forky/python-deeptoolsintervals=0.1.9-3 --2025-09-25 18:14:21-- http://deb.debian.org/debian/pool/main/p/python-deeptoolsintervals/python-deeptoolsintervals_0.1.9-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2299 (2.2K) [text/prs.lines.tag] Saving to: ‘python-deeptoolsintervals_0.1.9-3.dsc’ 0K .. 100% 265M=0s 2025-09-25 18:14:21 (265 MB/s) - ‘python-deeptoolsintervals_0.1.9-3.dsc’ saved [2299/2299] Thu Sep 25 18:14:21 UTC 2025 I: python-deeptoolsintervals_0.1.9-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-deeptoolsintervals Binary: python3-deeptoolsintervals Architecture: any Version: 0.1.9-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/deeptools/deeptools_intervals/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/python-deeptoolsintervals Vcs-Git: https://salsa.debian.org/med-team/python-deeptoolsintervals.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, zlib1g-dev Package-List: python3-deeptoolsintervals deb python optional arch=any Checksums-Sha1: 2e7b410bc12056dd57d427a7ee4e9d57e9fa6015 40839 python-deeptoolsintervals_0.1.9.orig.tar.gz 6b05677b596c3c369007ebcdecf8dd7b7b499e48 3272 python-deeptoolsintervals_0.1.9-3.debian.tar.xz Checksums-Sha256: bb9f0da0cd448ae070b4f51b11062a6087c40c8b1904add7f9f896f5f80e4d94 40839 python-deeptoolsintervals_0.1.9.orig.tar.gz cc44b0447fd7d24137d94138b34962ab1b799740d99caa22649fcede473f9929 3272 python-deeptoolsintervals_0.1.9-3.debian.tar.xz Files: 8fd6a7daef7a3cb4e0f51b136c009df5 40839 python-deeptoolsintervals_0.1.9.orig.tar.gz 279ddc6460997f7800b63c432367eacd 3272 python-deeptoolsintervals_0.1.9-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl8XB0wUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafEWOA//fCNQzLZTRF26eG0wzphejAdm+h2a c7PG8G4Wm4NVjsGK9Z1torvBXe2rSNAuRHFJ2iWuEsEowxciklFYpxVTs+JqVdC0 WjDaNQwwyk6FM4ZB+y0XLgW4iUMGhvzAzqz+3LUfPYDtLV3oOTJbjtMbSUu9wZoT wfGrgwslg5QZE6l6FC8WpRVY3+Y0ZFswJZyOsyheJarZbTFNEgwc6c2w2wuW6pbk VTL+XVvjPk5VksJOu0Vkqz9cX20Wv7cwq6SDEofQu43rwF+41Mr4BRvcMxeLJ+Ma ftZUohdD2dptorwnxQaLExIgkhssi/UG5IrJo5BwYQeMCZuoEEK8LuBoljioEB48 pjI3bsb8JYhiun5p2NhnX1qIe+xYC9V6pSBpI1VWXTvIzt6Y2H4vk4J8GSdstUDe jvb4mMMuOzPL3LIIq174g/dKZgofv4UW1T0VQpuVEZ0+4YVza0+lvVhdzESfZS5L hMcZ7in3wrUknfum5MX7mP+WKFlspTNd+SW+Dugdp5Ml8z+oSZX0u8WaAEXiiPk+ vhqeq4FJO0hHVgUpR9UP7eYGYA5dp2bQA1chTzk3lxUokfPDI6d/+fJjkrPS+aRt wPp8tlq3WDMTJuye32s3AwV3K2+Nw9hgyvPq6owyi/ahvz7giqDIMRmSL19a97r4 3Kgumd2wBcirgFI= =kOnK -----END PGP SIGNATURE----- Thu Sep 25 18:14:21 UTC 2025 I: Checking whether the package is not for us Thu Sep 25 18:14:21 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Sep 25 18:14:21 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Sep 25 18:14:59 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 25 06:14:23 -12 2025 I: pbuilder-time-stamp: 1758824063 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-deeptoolsintervals_0.1.9-3.dsc] I: copying [./python-deeptoolsintervals_0.1.9.orig.tar.gz] I: copying [./python-deeptoolsintervals_0.1.9-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-deeptoolsintervals_0.1.9-3.dsc: no acceptable signature found dpkg-source: info: extracting python-deeptoolsintervals in python-deeptoolsintervals-0.1.9 dpkg-source: info: unpacking python-deeptoolsintervals_0.1.9.orig.tar.gz dpkg-source: info: unpacking python-deeptoolsintervals_0.1.9-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/107143/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='f3beddada1f94cdfb23d2e77bf802205' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='107143' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SnY4gP92/pbuilderrc_WWEn --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SnY4gP92/b1 --logfile b1/build.log python-deeptoolsintervals_0.1.9-3.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/107143/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-sphinxdoc{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 27.3 MB of archives. After unpacking 116 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.2-1 [95.7 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 36 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.2-1 [290 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.7-1 [1978 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.7-1 [4924 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.7-1 [1068 B] Get: 52 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 53 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.7-1 [504 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.7-1 [1068 B] Get: 56 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 27.3 MB in 0s (155 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.2-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_arm64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:arm64 (3.13.7-1) ... Setting up libexpat1:arm64 (2.7.2-1) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20354 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21369 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41.1-3_arm64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../24-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../25-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package dh-python. Preparing to unpack .../30-dh-python_6.20250414_all.deb ... Unpacking dh-python (6.20250414) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../31-libexpat1-dev_2.7.2-1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.7.2-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../32-libjs-sphinxdoc_8.2.3-6_all.deb ... Unpacking libjs-sphinxdoc (8.2.3-6) ... Selecting previously unselected package libpython3.13:arm64. Preparing to unpack .../33-libpython3.13_3.13.7-1_arm64.deb ... Unpacking libpython3.13:arm64 (3.13.7-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../34-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpython3.13-dev:arm64. Preparing to unpack .../35-libpython3.13-dev_3.13.7-1_arm64.deb ... Unpacking libpython3.13-dev:arm64 (3.13.7-1) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../36-libpython3-dev_3.13.7-1_arm64.deb ... Unpacking libpython3-dev:arm64 (3.13.7-1) ... Selecting previously unselected package libpython3-all-dev:arm64. Preparing to unpack .../37-libpython3-all-dev_3.13.7-1_arm64.deb ... Unpacking libpython3-all-dev:arm64 (3.13.7-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../38-python3-all_3.13.7-1_arm64.deb ... Unpacking python3-all (3.13.7-1) ... Selecting previously unselected package python3.13-dev. Preparing to unpack .../39-python3.13-dev_3.13.7-1_arm64.deb ... Unpacking python3.13-dev (3.13.7-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../40-python3-dev_3.13.7-1_arm64.deb ... Unpacking python3-dev (3.13.7-1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../41-python3-all-dev_3.13.7-1_arm64.deb ... Unpacking python3-all-dev (3.13.7-1) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../42-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../43-python3-more-itertools_10.8.0-1_all.deb ... Unpacking python3-more-itertools (10.8.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../44-python3-typing-extensions_4.15.0-1_all.deb ... Unpacking python3-typing-extensions (4.15.0-1) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../45-python3-typeguard_4.4.4-1_all.deb ... Unpacking python3-typeguard (4.4.4-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../46-python3-inflect_7.5.0-1_all.deb ... Unpacking python3-inflect (7.5.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../47-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../48-python3-pkg-resources_78.1.1-0.1_all.deb ... Unpacking python3-pkg-resources (78.1.1-0.1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../49-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../50-python3-zipp_3.23.0-1_all.deb ... Unpacking python3-zipp (3.23.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../51-python3-setuptools_78.1.1-0.1_all.deb ... Unpacking python3-setuptools (78.1.1-0.1) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../52-python3-jaraco.context_6.0.1-1_all.deb ... Unpacking python3-jaraco.context (6.0.1-1) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Sep 25 18:14:45 UTC 2025. Universal Time is now: Thu Sep 25 18:14:45 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:arm64 (2.7.2-1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libjs-sphinxdoc (8.2.3-6) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.7-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libpython3.13:arm64 (3.13.7-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.13-dev:arm64 (3.13.7-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up libpython3-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.26) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-deeptoolsintervals-0.1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-deeptoolsintervals_0.1.9-3_source.changes dpkg-buildpackage: info: source package python-deeptoolsintervals dpkg-buildpackage: info: source version 0.1.9-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from python-deeptoolsintervals-0.1.9/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.13 I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running clean removing '/build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-deeptoolsintervals.substvars debian/files rm -fr -- debian/python3-deeptoolsintervals/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.13 I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.13 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals copying deeptoolsintervals/parse.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals copying deeptoolsintervals/enrichment.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals copying deeptoolsintervals/__init__.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals running egg_info creating deeptoolsintervals.egg-info writing deeptoolsintervals.egg-info/PKG-INFO writing dependency_links to deeptoolsintervals.egg-info/dependency_links.txt writing top-level names to deeptoolsintervals.egg-info/top_level.txt writing manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' reading manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'deeptoolsintervals/tree.*' adding license file 'LICENSE' writing manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'deeptoolsintervals.test' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'deeptoolsintervals.test' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'deeptoolsintervals.test' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'deeptoolsintervals.test' to be distributed and are already explicitly excluding 'deeptoolsintervals.test' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'deeptoolsintervals.tree' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'deeptoolsintervals.tree' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'deeptoolsintervals.tree' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'deeptoolsintervals.tree' to be distributed and are already explicitly excluding 'deeptoolsintervals.tree' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.2.gtf.gz -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.bed12.bz2 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.bed2 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.bed6 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.gtf.gz -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/GRCh38.84.labels.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/noOverlaps.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test copying deeptoolsintervals/test/strands.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/findOverlaps.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/gtf.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/gtf.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/hashTable.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/kseq.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/kstring.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/murmur3.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/murmur3.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/tree.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree copying deeptoolsintervals/tree/tree.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree running build_ext building 'deeptoolsintervals.tree' extension creating build/temp.linux-aarch64-cpython-313/deeptoolsintervals/tree aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -I/usr/include/python3.13 -c deeptoolsintervals/tree/findOverlaps.c -o build/temp.linux-aarch64-cpython-313/deeptoolsintervals/tree/findOverlaps.o aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -I/usr/include/python3.13 -c deeptoolsintervals/tree/gtf.c -o build/temp.linux-aarch64-cpython-313/deeptoolsintervals/tree/gtf.o aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -I/usr/include/python3.13 -c deeptoolsintervals/tree/hashTable.c -o build/temp.linux-aarch64-cpython-313/deeptoolsintervals/tree/hashTable.o aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -I/usr/include/python3.13 -c deeptoolsintervals/tree/murmur3.c -o build/temp.linux-aarch64-cpython-313/deeptoolsintervals/tree/murmur3.o aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -I/usr/include/python3.13 -c deeptoolsintervals/tree/tree.c -o build/temp.linux-aarch64-cpython-313/deeptoolsintervals/tree/tree.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-deeptoolsintervals-0.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/deeptoolsintervals/tree/findOverlaps.o build/temp.linux-aarch64-cpython-313/deeptoolsintervals/tree/gtf.o build/temp.linux-aarch64-cpython-313/deeptoolsintervals/tree/hashTable.o build/temp.linux-aarch64-cpython-313/deeptoolsintervals/tree/murmur3.o build/temp.linux-aarch64-cpython-313/deeptoolsintervals/tree/tree.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/python3.13/config-3.13-aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lz -lpython3.13 -o /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree.cpython-313-aarch64-linux-gnu.so /usr/lib/aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libpython3.13.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. dh_auto_test -O--buildsystem=pybuild pybuild --test -i python{version} -p 3.13 I: pybuild base:311: cd /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN rm -fr -- /tmp/dh-xdg-rundir-_wnSWRz1 create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-deeptoolsintervals.substvars rm -fr -- debian/.debhelper/generated/python3-deeptoolsintervals/ debian/python3-deeptoolsintervals/ debian/tmp/ dh_auto_install --destdir=debian/python3-deeptoolsintervals/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals pybuild --install -i python{version} -p 3.13 --dest-dir=/build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'classifier' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing deeptoolsintervals.egg-info/PKG-INFO writing dependency_links to deeptoolsintervals.egg-info/dependency_links.txt writing top-level names to deeptoolsintervals.egg-info/top_level.txt reading manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'deeptoolsintervals/tree.*' adding license file 'LICENSE' writing manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'deeptoolsintervals.test' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'deeptoolsintervals.test' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'deeptoolsintervals.test' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'deeptoolsintervals.test' to be distributed and are already explicitly excluding 'deeptoolsintervals.test' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'deeptoolsintervals.tree' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'deeptoolsintervals.tree' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'deeptoolsintervals.tree' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'deeptoolsintervals.tree' to be distributed and are already explicitly excluding 'deeptoolsintervals.tree' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/__pycache__ copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/__pycache__/enrichment.cpython-313.pyc -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/__pycache__ copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/__pycache__/parse.cpython-313.pyc -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/__pycache__ copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/__pycache__ copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree/tree.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree/tree.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree/murmur3.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree/murmur3.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree/kstring.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree/kseq.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree/hashTable.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree/gtf.h -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree/gtf.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/tree copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/tree/findOverlaps.c -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/tree creating /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test/strands.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test/noOverlaps.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.labels.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.gtf.gz -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.bed6 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.bed2 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.bed12.bz2 -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.bed -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/test/GRCh38.84.2.gtf.gz -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/test copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/__init__.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/enrichment.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals copying /build/reproducible-path/python-deeptoolsintervals-0.1.9/.pybuild/cpython3_3.13_deeptoolsintervals/build/deeptoolsintervals/parse.py -> /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals byte-compiling /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/enrichment.py to enrichment.cpython-313.pyc byte-compiling /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals/parse.py to parse.cpython-313.pyc running install_egg_info Copying deeptoolsintervals.egg-info to /build/reproducible-path/python-deeptoolsintervals-0.1.9/debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages/deeptoolsintervals-0.1.9.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/usr/share/doc/python3-deeptoolsintervals install -p -m0644 debian/copyright debian/python3-deeptoolsintervals/usr/share/doc/python3-deeptoolsintervals/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/usr/share/doc/python3-deeptoolsintervals install -p -m0644 debian/.debhelper/generated/python3-deeptoolsintervals/dh_installchangelogs.dch.trimmed debian/python3-deeptoolsintervals/usr/share/doc/python3-deeptoolsintervals/changelog.Debian dh_installexamples -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/usr/share/doc/python3-deeptoolsintervals/examples cp --reflink=auto -a ./debian/tests/sample_test.py debian/python3-deeptoolsintervals/usr/share/doc/python3-deeptoolsintervals/examples dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:174: source=python-deeptoolsintervals, binary packages=['python3-deeptoolsintervals'] D: dh_python3 dh_python3:205: processing package python3-deeptoolsintervals... D: dh_python3 fs:50: moving files from debian/python3-deeptoolsintervals/usr/lib/python3.13/dist-packages to debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-deeptoolsintervals details = {'requires.txt': set(), 'egg-info': {'debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals-0.1.9.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-deeptoolsintervals D: dh_python3 depends:253: D={'python3 (<< 3.14)', 'python3:any', 'python3 (>= 3.13~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild Using 1595335582 as canonical time Normalizing debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/test/GRCh38.84.gtf.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/test/GRCh38.84.2.gtf.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--buildsystem=pybuild cd debian/python3-deeptoolsintervals chmod a-x usr/share/doc/python3-deeptoolsintervals/changelog.Debian gzip -9nf usr/share/doc/python3-deeptoolsintervals/changelog.Debian cd '/build/reproducible-path/python-deeptoolsintervals-0.1.9' dh_fixperms -O--buildsystem=pybuild find debian/python3-deeptoolsintervals ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-deeptoolsintervals/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-deeptoolsintervals/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-deeptoolsintervals/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-deeptoolsintervals -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-deeptoolsintervals/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz -- debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-313-aarch64-linux-gnu.so dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.build-id/c8 objcopy --only-keep-debug --compress-debug-sections debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.build-id/c8/fe7d5a180ef83f5004f11bba8a9697df76821a.debug chmod 0644 -- debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.build-id/c8/fe7d5a180ef83f5004f11bba8a9697df76821a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/lib/debug/.build-id/c8/fe7d5a180ef83f5004f11bba8a9697df76821a.debug debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/share/doc ln -s python3-deeptoolsintervals debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/usr/share/doc/python3-deeptoolsintervals-dbgsym install -m0755 -d debian/.debhelper/python3-deeptoolsintervals dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-deeptoolsintervals/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/DEBIAN dpkg-shlibdeps -Tdebian/python3-deeptoolsintervals.substvars debian/python3-deeptoolsintervals/usr/lib/python3/dist-packages/deeptoolsintervals/tree.cpython-313-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-deeptoolsintervals/DEBIAN/postinst cat debian/python3-deeptoolsintervals.postinst.debhelper >> debian/python3-deeptoolsintervals/DEBIAN/postinst chmod 0755 -- debian/python3-deeptoolsintervals/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-deeptoolsintervals/DEBIAN/prerm cat debian/python3-deeptoolsintervals.prerm.debhelper >> debian/python3-deeptoolsintervals/DEBIAN/prerm chmod 0755 -- debian/python3-deeptoolsintervals/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/DEBIAN echo misc:Depends= >> debian/python3-deeptoolsintervals.substvars echo misc:Pre-Depends= >> debian/python3-deeptoolsintervals.substvars install -m0755 -d debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-deeptoolsintervals -ldebian/changelog -Tdebian/python3-deeptoolsintervals.substvars -cdebian/control -Pdebian/.debhelper/python3-deeptoolsintervals/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-deeptoolsintervals-dbgsym "-DDepends=python3-deeptoolsintervals (= \${binary:Version})" "-DDescription=debug symbols for python3-deeptoolsintervals" -DBuild-Ids=c8fe7d5a180ef83f5004f11bba8a9697df76821a -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-deeptoolsintervals -ldebian/changelog -Tdebian/python3-deeptoolsintervals.substvars -cdebian/control -Pdebian/python3-deeptoolsintervals chmod 0644 -- debian/python3-deeptoolsintervals/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-deeptoolsintervals/DEBIAN cd debian/python3-deeptoolsintervals >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-deeptoolsintervals/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/DEBIAN cd debian/.debhelper/python3-deeptoolsintervals/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-deeptoolsintervals/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-deeptoolsintervals .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-deeptoolsintervals/dbgsym-root .. dpkg-deb: building package 'python3-deeptoolsintervals-dbgsym' in '../python3-deeptoolsintervals-dbgsym_0.1.9-3_arm64.deb'. dpkg-deb: building package 'python3-deeptoolsintervals' in '../python3-deeptoolsintervals_0.1.9-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-deeptoolsintervals_0.1.9-3_arm64.buildinfo dpkg-genchanges --build=binary -O../python-deeptoolsintervals_0.1.9-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-deeptoolsintervals-0.1.9/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/107143 and its subdirectories I: Current time: Thu Sep 25 06:14:58 -12 2025 I: pbuilder-time-stamp: 1758824098 Thu Sep 25 18:15:00 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu Sep 25 18:15:00 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu Sep 25 18:15:43 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu Sep 25 18:15:43 UTC 2025 I: python-deeptoolsintervals_0.1.9-3_arm64.changes: Format: 1.8 Date: Tue, 21 Jul 2020 18:16:22 +0530 Source: python-deeptoolsintervals Binary: python3-deeptoolsintervals python3-deeptoolsintervals-dbgsym Architecture: arm64 Version: 0.1.9-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-deeptoolsintervals - handlig GTF-like sequence-associated interal-annotation Changes: python-deeptoolsintervals (0.1.9-3) unstable; urgency=medium . * Team Upload. * Add a very simple autopkgtest * Install relevant test file * Compat version: 13 * Add "Rules-Requires-Root:no" * Hardening flags Checksums-Sha1: b9d96a058ad3b3b66259451717f82a03bb5964c9 6181 python-deeptoolsintervals_0.1.9-3_arm64.buildinfo 174b289c30e8118a74a04301e7305bb542a7ffed 54504 python3-deeptoolsintervals-dbgsym_0.1.9-3_arm64.deb 57a7cf7875703883202cb485f444d717ae76a376 51104 python3-deeptoolsintervals_0.1.9-3_arm64.deb Checksums-Sha256: b3ca6378ab4a5856b5bbe49b145a3ee12028d9846f0be031b4f64c109f6c9cc6 6181 python-deeptoolsintervals_0.1.9-3_arm64.buildinfo e2b99df5663ce7853062cd69dae52c18ef6299e0c379d2ce38ebd64edbb52e8a 54504 python3-deeptoolsintervals-dbgsym_0.1.9-3_arm64.deb b2c8771f066b4a9ae821222309aaebcce666ba7ed95a81665903a98453532a68 51104 python3-deeptoolsintervals_0.1.9-3_arm64.deb Files: 0549028b1fd60eb86206f3ed19a60be9 6181 science optional python-deeptoolsintervals_0.1.9-3_arm64.buildinfo 56f04cf21963222006502e5741e97435 54504 debug optional python3-deeptoolsintervals-dbgsym_0.1.9-3_arm64.deb e3f429071261a6af58093718478c48df 51104 python optional python3-deeptoolsintervals_0.1.9-3_arm64.deb Thu Sep 25 18:15:44 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_8-90561.service; invocation ID: aaf193175dbe4c31b07f5b1d78ca5aa5 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.SnY4gP92/python-deeptoolsintervals_0.1.9-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.SnY4gP92/python-deeptoolsintervals_0.1.9-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.SnY4gP92/python-deeptoolsintervals_0.1.9-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.SnY4gP92/b1/python-deeptoolsintervals_0.1.9-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.SnY4gP92/b2/python-deeptoolsintervals_0.1.9-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 224ms CPU time consumed: 177ms Memory peak: 18.1M (swap: 0B) Thu Sep 25 18:15:44 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Thu Sep 25 18:15:44 UTC 2025 I: python-deeptoolsintervals from forky built successfully and reproducibly on arm64. Thu Sep 25 18:15:45 UTC 2025 I: Removing signed python-deeptoolsintervals_0.1.9-3_arm64.buildinfo.asc files: removed './b1/python-deeptoolsintervals_0.1.9-3_arm64.buildinfo.asc' removed './b2/python-deeptoolsintervals_0.1.9-3_arm64.buildinfo.asc'