Sun Aug 17 15:05:27 UTC 2025 I: starting to build python-gsd/forky/arm64 on jenkins on '2025-08-17 15:05' Sun Aug 17 15:05:27 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_8/83610/console.log Sun Aug 17 15:05:27 UTC 2025 I: Downloading source for forky/python-gsd=4.0.0-1 --2025-08-17 15:05:28-- http://deb.debian.org/debian/pool/main/p/python-gsd/python-gsd_4.0.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2515 (2.5K) [text/prs.lines.tag] Saving to: ‘python-gsd_4.0.0-1.dsc’ 0K .. 100% 269M=0s 2025-08-17 15:05:28 (269 MB/s) - ‘python-gsd_4.0.0-1.dsc’ saved [2515/2515] Sun Aug 17 15:05:28 UTC 2025 I: python-gsd_4.0.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-gsd Binary: python3-gsd, python-gsd-doc Architecture: any all Version: 4.0.0-1 Maintainer: Debichem Team Uploaders: Drew Parsons Homepage: https://gsd.readthedocs.io/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/debichem-team/python-gsd Vcs-Git: https://salsa.debian.org/debichem-team/python-gsd.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), cython3, dh-python, dh-sequence-numpy3, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-ipython, python3-numpy (>= 1:1.19.0~), python3-pytest , python3-sphinx, architecture-properties, architecture-is-little-endian Build-Depends-Indep: python3-doc, doxygen , furo, libjs-mathjax , python3-breathe, python-numpy-doc , python3-pandas, python3-sphinx-rtd-theme , python3-sphinx-copybutton Package-List: python-gsd-doc deb doc optional arch=all python3-gsd deb python optional arch=any Checksums-Sha1: 110ea74fab1d3c32c235347e7f845f27a766c8d6 110337 python-gsd_4.0.0.orig.tar.gz 766351a71ecc27d9f24c4b2e8226cb800ed02ee6 6504 python-gsd_4.0.0-1.debian.tar.xz Checksums-Sha256: 9bdfe76da0578aa662c7428d09a995dd3e19177dfe5dee32e4286697f978eb31 110337 python-gsd_4.0.0.orig.tar.gz 668adbacc29953f8266bc3c6b456457f091096e40acae7d7892e7cce57766b99 6504 python-gsd_4.0.0-1.debian.tar.xz Files: 2eefc2c573f47842207df73b7dfcac76 110337 python-gsd_4.0.0.orig.tar.gz fafe2d1bb4e1d98ebcbdd8e38d17305b 6504 python-gsd_4.0.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmiZrV4ACgkQVz7x5L1a AfrInRAAtswa9d5hxdfoyNsIAEgEICekFBUjA//bT8fkLGAXJ+E2TT3ltrsUspCZ L+5ae9KrWs+q0hn8xlAQm0EG/4oU2mdcf5FG9nu3Vlo/WPm2ZZtAadBWyKQ8hhuK gL9yPrvGda7AvHUV3gRvi89HKeL6/DAH652p7xmyZvAlKNAW1bzEcCRe48m0iDc3 767uRUTUHhNGqBQ6RKWxIjJB1kZfERiZfPrfJNa87DZiTby6ilLuNexSCYq+98Tp 8TJ7YIQx2919u+kIXnN2+MsjCqGXdiX+5LFjUWWtScKdqI+Yn975EpHzqDWcaFwA Q6hyXlXyoRj+hPJx9YxFJuJ19ZTuQWuKS9/FQoK3BR0eRfhprbBEnGLNXSTkYj4j 93kFrLP49vHKcwitjTBZMhmXG0DrLh9lnLozOrBUFR3+hPQ6pZWmlw88kAoorxoE q6ToIVWW2heC4A6t++aC9h1TbZ3l1f2fUmMQjX99Gw+vOWMjuwRqcVbVKgQJkhWg bfcGctAIfCRX4N/K6VI+ZEqolzoE2wDGAbGRzo4DTC+RivHFx/sm89BCvQlCIjEP hQx8D4+en1E9XkKkNMVg27TapvRwv8i7zj32t9dgY0htuQAS6YyVAVww2VxeR5Ax 1B9/IC9iGabHwWL3CkOsLp9TQ8oKkYEn7R36P6pZ8j92U6SuGnc= =8I2H -----END PGP SIGNATURE----- Sun Aug 17 15:05:28 UTC 2025 I: Checking whether the package is not for us Sun Aug 17 15:05:28 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sun Aug 17 15:05:28 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sun Aug 17 15:07:47 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Aug 17 03:05:29 -12 2025 I: pbuilder-time-stamp: 1755443129 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-gsd_4.0.0-1.dsc] I: copying [./python-gsd_4.0.0.orig.tar.gz] I: copying [./python-gsd_4.0.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-gsd_4.0.0-1.dsc: no acceptable signature found dpkg-source: info: extracting python-gsd in python-gsd-4.0.0 dpkg-source: info: unpacking python-gsd_4.0.0.orig.tar.gz dpkg-source: info: unpacking python-gsd_4.0.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying docs_local_scripts.patch dpkg-source: info: applying test_large_32bit.patch dpkg-source: info: applying doc_ignore_exceptions.patch dpkg-source: info: applying docs_build.patch dpkg-source: info: applying test_read_log_numpy2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2672740/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='a271381cd0f44647a3b425f98cc02844' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2672740' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wlINol3s/pbuilderrc_J9WM --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wlINol3s/b1 --logfile b1/build.log python-gsd_4.0.0-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.41+deb13-cloud-arm64 #1 SMP Debian 6.12.41-1 (2025-08-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2672740/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cython3, dh-python, dh-sequence-numpy3, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-ipython, python3-numpy (>= 1:1.19.0~), python3-pytest, python3-sphinx, architecture-properties, architecture-is-little-endian, python3-doc, doxygen, furo, libjs-mathjax, python3-breathe, python-numpy-doc, python3-pandas, python3-sphinx-rtd-theme, python3-sphinx-copybutton dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20004 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-numpy3; however: Package dh-sequence-numpy3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ipython; however: Package python3-ipython is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1:1.19.0~); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on architecture-properties; however: Package architecture-properties is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on python3-doc; however: Package python3-doc is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on furo; however: Package furo is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on python3-breathe; however: Package python3-breathe is not installed. pbuilder-satisfydepends-dummy depends on python-numpy-doc; however: Package python-numpy-doc is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-copybutton; however: Package python3-sphinx-copybutton is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-lato{a} fonts-mathjax{a} furo{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp19{a} libclang1-19{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} liblab-gamut1{a} liblapack3{a} liblerc4{a} libllvm19{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsm6{a} libsvtav1enc2{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyuv0{a} libz3-4{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-numpy-doc{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-asttokens{a} python3-autocommand{a} python3-babel{a} python3-breathe{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-doc{a} python3-docutils{a} python3-executing{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-ipython{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jedi{a} python3-jinja2{a} python3-markupsafe{a} python3-matplotlib-inline{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parso{a} python3-pexpect{a} python3-pkg-resources{a} python3-pluggy{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pygments{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytz{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-sphinx{a} python3-sphinx-copybutton{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-stack-data{a} python3-traitlets{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-urllib3{a} python3-wcwidth{a} python3-wheel{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-doc{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-basic-ng{a} sphinx-common{a} sphinx-rtd-theme-common{a} tzdata{a} x11-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-liberation javascript-common libarchive-cpio-perl libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-bottleneck python3-html5lib python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-scipy python3-tables python3-tz shared-mime-info wget xdg-user-dirs 0 packages upgraded, 218 newly installed, 0 to remove and 0 not upgraded. Need to get 165 MB of archives. After unpacking 865 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.5-2 [856 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.5-2 [2003 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.5-2 [1892 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.5-2 [757 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1 [136 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libblas3 arm64 3.12.1-6 [104 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 14.2.0-19 [361 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 liblapack3 arm64 3.12.1-6 [1820 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 python3-numpy arm64 1:2.2.4+ds-1 [3604 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 openssl arm64 3.5.1-1 [1457 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 ca-certificates all 20250419 [162 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-1 [93.8 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 34 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-4 [539 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 46 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-2.1 [630 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 debhelper all 13.24.2 [919 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 xml-core all 0.19 [20.1 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libllvm19 arm64 1:19.1.7-3+b1 [23.3 MB] Get: 61 http://deb.debian.org/debian forky/main arm64 libclang-cpp19 arm64 1:19.1.7-3+b1 [12.0 MB] Get: 62 http://deb.debian.org/debian forky/main arm64 libclang1-19 arm64 1:19.1.7-3+b1 [6866 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libfmt10 arm64 10.1.1+ds1-4 [121 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 doxygen arm64 1.9.8+ds-2.1 [4519 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libpng16-16t64 arm64 1.6.48-1 [274 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 fontconfig-config arm64 2.15.0-2.3 [318 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libfontconfig1 arm64 2.15.0-2.3 [387 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 fontconfig arm64 2.15.0-2.3 [463 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 python3-soupsieve all 2.7-1 [39.0 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.14.1-1 [91.3 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 python3-bs4 all 4.13.4-2 [167 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 sphinx-common all 8.1.3-5 [617 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 python3-babel all 2.17.0-1 [117 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 python3-roman all 5.0-1 [10.6 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 91 http://deb.debian.org/debian forky/main arm64 python3-markupsafe arm64 2.1.5-1+b4 [14.1 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 95 http://deb.debian.org/debian forky/main arm64 python3-charset-normalizer arm64 3.4.2-1 [120 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 97 http://deb.debian.org/debian forky/main arm64 python3-urllib3 all 2.3.0-3 [115 kB] Get: 98 http://deb.debian.org/debian forky/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 99 http://deb.debian.org/debian forky/main arm64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get: 100 http://deb.debian.org/debian forky/main arm64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 101 http://deb.debian.org/debian forky/main arm64 python3-sphinx all 8.1.3-5 [468 kB] Get: 102 http://deb.debian.org/debian forky/main arm64 sphinx-basic-ng all 1.0.0~beta2-1 [13.0 kB] Get: 103 http://deb.debian.org/debian forky/main arm64 furo all 2024.08.06+dfsg-1 [62.8 kB] Get: 104 http://deb.debian.org/debian forky/main arm64 libann0 arm64 1.1.2+doc-9+b2 [24.1 kB] Get: 105 http://deb.debian.org/debian forky/main arm64 libcdt5 arm64 2.42.4-3 [39.2 kB] Get: 106 http://deb.debian.org/debian forky/main arm64 libcgraph6 arm64 2.42.4-3 [61.1 kB] Get: 107 http://deb.debian.org/debian forky/main arm64 libaom3 arm64 3.12.1-1 [1670 kB] Get: 108 http://deb.debian.org/debian forky/main arm64 libdav1d7 arm64 1.5.1-1 [252 kB] Get: 109 http://deb.debian.org/debian forky/main arm64 libabsl20240722 arm64 20240722.0-4 [452 kB] Get: 110 http://deb.debian.org/debian forky/main arm64 libgav1-1 arm64 0.19.0-3+b1 [491 kB] Get: 111 http://deb.debian.org/debian forky/main arm64 librav1e0.7 arm64 0.7.1-9+b2 [662 kB] Get: 112 http://deb.debian.org/debian forky/main arm64 libsvtav1enc2 arm64 2.3.0+dfsg-1 [1558 kB] Get: 113 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 114 http://deb.debian.org/debian forky/main arm64 libyuv0 arm64 0.0.1904.20250204-1 [137 kB] Get: 115 http://deb.debian.org/debian forky/main arm64 libavif16 arm64 1.2.1-1.2 [125 kB] Get: 116 http://deb.debian.org/debian forky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 117 http://deb.debian.org/debian forky/main arm64 libheif-plugin-dav1d arm64 1.19.8-1 [11.6 kB] Get: 118 http://deb.debian.org/debian forky/main arm64 libde265-0 arm64 1.0.16-1 [153 kB] Get: 119 http://deb.debian.org/debian forky/main arm64 libheif-plugin-libde265 arm64 1.19.8-1 [15.1 kB] Get: 120 http://deb.debian.org/debian forky/main arm64 libheif1 arm64 1.19.8-1 [442 kB] Get: 121 http://deb.debian.org/debian forky/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 122 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 123 http://deb.debian.org/debian forky/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 124 http://deb.debian.org/debian forky/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 125 http://deb.debian.org/debian forky/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 126 http://deb.debian.org/debian forky/main arm64 libtiff6 arm64 4.7.0-3 [325 kB] Get: 127 http://deb.debian.org/debian forky/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 128 http://deb.debian.org/debian forky/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 129 http://deb.debian.org/debian forky/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 130 http://deb.debian.org/debian forky/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 131 http://deb.debian.org/debian forky/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 132 http://deb.debian.org/debian forky/main arm64 libxpm4 arm64 1:3.5.17-1+b3 [53.4 kB] Get: 133 http://deb.debian.org/debian forky/main arm64 libgd3 arm64 2.3.3-13 [115 kB] Get: 134 http://deb.debian.org/debian forky/main arm64 libglib2.0-0t64 arm64 2.84.3-1 [1426 kB] Get: 135 http://deb.debian.org/debian forky/main arm64 libgts-0.7-5t64 arm64 0.7.6+darcs121130-5.2+b1 [145 kB] Get: 136 http://deb.debian.org/debian forky/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 137 http://deb.debian.org/debian forky/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 138 http://deb.debian.org/debian forky/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 139 http://deb.debian.org/debian forky/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 140 http://deb.debian.org/debian forky/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 141 http://deb.debian.org/debian forky/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 142 http://deb.debian.org/debian forky/main arm64 libltdl7 arm64 2.5.4-4 [415 kB] Get: 143 http://deb.debian.org/debian forky/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 144 http://deb.debian.org/debian forky/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 145 http://deb.debian.org/debian forky/main arm64 libharfbuzz0b arm64 10.2.0-1+b1 [442 kB] Get: 146 http://deb.debian.org/debian forky/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 147 http://deb.debian.org/debian forky/main arm64 libdatrie1 arm64 0.2.13-4 [37.4 kB] Get: 148 http://deb.debian.org/debian forky/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 149 http://deb.debian.org/debian forky/main arm64 libpango-1.0-0 arm64 1.56.3-1 [213 kB] Get: 150 http://deb.debian.org/debian forky/main arm64 libpangoft2-1.0-0 arm64 1.56.3-1 [52.9 kB] Get: 151 http://deb.debian.org/debian forky/main arm64 libpangocairo-1.0-0 arm64 1.56.3-1 [33.7 kB] Get: 152 http://deb.debian.org/debian forky/main arm64 libpathplan4 arm64 2.42.4-3 [41.2 kB] Get: 153 http://deb.debian.org/debian forky/main arm64 libgvc6 arm64 2.42.4-3 [629 kB] Get: 154 http://deb.debian.org/debian forky/main arm64 libgvpr2 arm64 2.42.4-3 [181 kB] Get: 155 http://deb.debian.org/debian forky/main arm64 liblab-gamut1 arm64 2.42.4-3 [198 kB] Get: 156 http://deb.debian.org/debian forky/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 157 http://deb.debian.org/debian forky/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 158 http://deb.debian.org/debian forky/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Get: 159 http://deb.debian.org/debian forky/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b2 [173 kB] Get: 160 http://deb.debian.org/debian forky/main arm64 libxmu6 arm64 2:1.1.3-3+b4 [55.7 kB] Get: 161 http://deb.debian.org/debian forky/main arm64 libxaw7 arm64 2:1.0.16-1 [195 kB] Get: 162 http://deb.debian.org/debian forky/main arm64 graphviz arm64 2.42.4-3 [572 kB] Get: 163 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.1-2 [145 kB] Get: 164 http://deb.debian.org/debian forky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 165 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.5-2 [1976 kB] Get: 166 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 167 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.5-2 [4890 kB] Get: 168 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.5-1 [10.4 kB] Get: 169 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.5-1 [1068 B] Get: 170 http://deb.debian.org/debian forky/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 171 http://deb.debian.org/debian forky/main arm64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 172 http://deb.debian.org/debian forky/main arm64 python3-build all 1.2.2-4 [36.2 kB] Get: 173 http://deb.debian.org/debian forky/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 174 http://deb.debian.org/debian forky/main arm64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 175 http://deb.debian.org/debian forky/main arm64 python-numpy-doc all 1:2.2.4+ds-1 [5814 kB] Get: 176 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.5-1 [1044 B] Get: 177 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.5-2 [505 kB] Get: 178 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.5-1 [26.1 kB] Get: 179 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.5-1 [1068 B] Get: 180 http://deb.debian.org/debian forky/main arm64 python3-asttokens all 3.0.0-2 [20.2 kB] Get: 181 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 182 http://deb.debian.org/debian forky/main arm64 python3-breathe all 4.35.0-3 [78.2 kB] Get: 183 http://deb.debian.org/debian forky/main arm64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 184 http://deb.debian.org/debian forky/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 185 http://deb.debian.org/debian forky/main arm64 python3.13-doc all 3.13.5-2 [15.4 MB] Get: 186 http://deb.debian.org/debian forky/main arm64 python3-doc all 3.13.5-1 [10.4 kB] Get: 187 http://deb.debian.org/debian forky/main arm64 python3-executing all 2.2.0-0.1 [24.5 kB] Get: 188 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 189 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 190 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 191 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 192 http://deb.debian.org/debian forky/main arm64 python3-parso all 0.8.4-1 [67.8 kB] Get: 193 http://deb.debian.org/debian forky/main arm64 python3-typeshed all 0.0~git20241223.ea91db2-3 [1531 kB] Get: 194 http://deb.debian.org/debian forky/main arm64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get: 195 http://deb.debian.org/debian forky/main arm64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 196 http://deb.debian.org/debian forky/main arm64 python3-matplotlib-inline all 0.1.7-1 [9032 B] Get: 197 http://deb.debian.org/debian forky/main arm64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 198 http://deb.debian.org/debian forky/main arm64 python3-prompt-toolkit all 3.0.51-2 [278 kB] Get: 199 http://deb.debian.org/debian forky/main arm64 python3-pure-eval all 0.2.3-1 [11.2 kB] Get: 200 http://deb.debian.org/debian forky/main arm64 python3-stack-data all 0.6.3-1 [21.6 kB] Get: 201 http://deb.debian.org/debian forky/main arm64 python3-ptyprocess all 0.7.0-6 [14.5 kB] Get: 202 http://deb.debian.org/debian forky/main arm64 python3-pexpect all 4.9-3 [55.6 kB] Get: 203 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 204 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 205 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 206 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 207 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 208 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 209 http://deb.debian.org/debian forky/main arm64 python3-ipython all 8.35.0-1 [576 kB] Get: 210 http://deb.debian.org/debian forky/main arm64 python3-pytz all 2025.2-3 [152 kB] Get: 211 http://deb.debian.org/debian forky/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-9 [3877 kB] Get: 212 http://deb.debian.org/debian forky/main arm64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get: 213 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 214 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.3.5-2 [250 kB] Get: 215 http://deb.debian.org/debian forky/main arm64 python3-sphinx-copybutton all 0.5.2-3 [18.1 kB] Get: 216 http://deb.debian.org/debian forky/main arm64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get: 217 http://deb.debian.org/debian forky/main arm64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 218 http://deb.debian.org/debian forky/main arm64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [29.7 kB] Fetched 165 MB in 1s (271 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20004 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:arm64. 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Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:arm64 (1.23-2) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ... Setting up file (1:5.46-5) ... Setting up libabsl20240722:arm64 (20240722.0-4) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up python-babel-localedata (2.17.0-1) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Aug 17 15:06:01 UTC 2025. Universal Time is now: Sun Aug 17 15:06:01 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libz3-4:arm64 (4.13.3-1) ... 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Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Setting up libfmt10:arm64 (10.1.1+ds1-4) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libllvm19:arm64 (1:19.1.7-3+b1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up libavif16:arm64 (1.2.1-1.2) ... Setting up liblapack3:arm64 (3.12.1-6) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-2) ... Setting up libclang1-19 (1:19.1.7-3+b1) ... Setting up libxpm4:arm64 (1:3.5.17-1+b3) ... Setting up libxrender1:arm64 (1:0.9.12-1) ... Setting up libtool (2.5.4-4) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up python3.13-doc (3.13.5-2) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libglib2.0-0t64:arm64 (2.84.3-1) ... No schema files found: doing nothing. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libgvpr2:arm64 (2.42.4-3) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:arm64 (10.2.0-1+b1) ... Setting up libgts-0.7-5t64:arm64 (0.7.6+darcs121130-5.2+b1) ... Setting up libfontconfig1:arm64 (2.15.0-2.3) ... Setting up libsm6:arm64 (2:1.2.6-1) ... Setting up libpython3.13-stdlib:arm64 (3.13.5-2) ... Setting up python3-doc (3.13.5-1) ... Setting up libpython3-stdlib:arm64 (3.13.5-1) ... Setting up libclang-cpp19 (1:19.1.7-3+b1) ... Setting up libpython3.13:arm64 (3.13.5-2) ... Setting up python-numpy-doc (1:2.2.4+ds-1) ... Setting up fontconfig (2.15.0-2.3) ... Regenerating fonts cache... done. Setting up python3.13 (3.13.5-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:arm64 (1.56.3-1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b4) ... Setting up libcairo2:arm64 (1.18.4-1+b1) ... Setting up python3-roman (5.0-1) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up doxygen (1.9.8+ds-2.1) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-typeshed (0.0~git20241223.ea91db2-3) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up libpython3.13-dev:arm64 (3.13.5-2) ... Setting up sphinx-common (8.1.3-5) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2+b2) ... Setting up python3-idna (3.10-1) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.14.1-1) ... Setting up python3-numpy (1:2.2.4+ds-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-urllib3 (2.3.0-3) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up libpangoft2-1.0-0:arm64 (1.56.3-1) ... Setting up python3-soupsieve (2.7-1) ... Setting up libpangocairo-1.0-0:arm64 (1.56.3-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-ptyprocess (0.7.0-6) ... Setting up python3-prompt-toolkit (3.0.51-2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-pure-eval (0.2.3-1) ... Setting up libxmu6:arm64 (2:1.1.3-3+b4) ... Setting up libpython3-dev:arm64 (3.13.5-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-parso (0.8.4-1) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-asttokens (3.0.0-2) ... Setting up python3-charset-normalizer (3.4.2-1) ... Setting up python3.13-dev (3.13.5-2) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-9) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-all (3.13.5-1) ... Setting up debhelper (13.24.2) ... Setting up python3-pytz (2025.2-3) ... Setting up libxaw7:arm64 (2:1.0.16-1) ... Setting up python3-wheel (0.46.1-2) ... Setting up python3-bs4 (4.13.4-2) ... Setting up python3-matplotlib-inline (0.1.7-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-9) ... Setting up python3-executing (2.2.0-0.1) ... Setting up libpython3-all-dev:arm64 (3.13.5-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pexpect (4.9-3) ... Setting up python3-dev (3.13.5-1) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up python3-build (1.2.2-4) ... Setting up python3-stack-data (0.6.3-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.5-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-jedi (0.19.1+ds1-1) ... Setting up pybuild-plugin-pyproject (6.20250414) ... Setting up python3-ipython (8.35.0-1) ... Setting up libheif-plugin-dav1d:arm64 (1.19.8-1) ... Setting up libheif-plugin-libde265:arm64 (1.19.8-1) ... Setting up libheif1:arm64 (1.19.8-1) ... Setting up libgd3:arm64 (2.3.3-13) ... Setting up libgvc6 (2.42.4-3) ... Setting up graphviz (2.42.4-3) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (8.1.3-5) ... Setting up python3-sphinx-copybutton (0.5.2-3) ... Setting up python3-breathe (4.35.0-3) ... Setting up python3-sphinxcontrib.jquery (4.1-5) ... Setting up sphinx-basic-ng (1.0.0~beta2-1) ... Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ... Setting up furo (2024.08.06+dfsg-1) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-gsd-4.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-gsd_4.0.0-1_source.changes dpkg-buildpackage: info: source package python-gsd dpkg-buildpackage: info: source version 4.0.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from python-gsd-4.0.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/python-gsd-4.0.0' dh_clean rm -f gsd/fl.c || /bin/true rm -rf devdoc rm -rf gsd/test/.pytest_cache make[1]: Leaving directory '/build/reproducible-path/python-gsd-4.0.0' debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-gsd-4.0.0/.pybuild/cpython3_3.13_gsd * Building wheel... Compiling gsd/fl.pyx because it changed. [1/1] Cythonizing gsd/fl.pyx /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-aarch64-cpython-313/gsd copying gsd/version.py -> build/lib.linux-aarch64-cpython-313/gsd copying gsd/pytest_plugin_validate.py -> build/lib.linux-aarch64-cpython-313/gsd copying gsd/pygsd.py -> build/lib.linux-aarch64-cpython-313/gsd copying gsd/hoomd.py -> build/lib.linux-aarch64-cpython-313/gsd copying gsd/conftest.py -> build/lib.linux-aarch64-cpython-313/gsd copying gsd/__main__.py -> build/lib.linux-aarch64-cpython-313/gsd copying gsd/__init__.py -> build/lib.linux-aarch64-cpython-313/gsd creating build/lib.linux-aarch64-cpython-313/gsd/test copying gsd/test/test_hoomd.py -> build/lib.linux-aarch64-cpython-313/gsd/test copying gsd/test/test_largefile.py -> build/lib.linux-aarch64-cpython-313/gsd/test copying gsd/test/test_fl.py -> build/lib.linux-aarch64-cpython-313/gsd/test copying gsd/test/conftest.py -> build/lib.linux-aarch64-cpython-313/gsd/test running egg_info creating gsd.egg-info writing gsd.egg-info/PKG-INFO writing dependency_links to gsd.egg-info/dependency_links.txt writing entry points to gsd.egg-info/entry_points.txt writing requirements to gsd.egg-info/requires.txt writing top-level names to gsd.egg-info/top_level.txt writing manifest file 'gsd.egg-info/SOURCES.txt' dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'gsd.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'gsd.egg-info/SOURCES.txt' copying gsd/fl.c -> build/lib.linux-aarch64-cpython-313/gsd copying gsd/fl.pyx -> build/lib.linux-aarch64-cpython-313/gsd copying gsd/gsd.c -> build/lib.linux-aarch64-cpython-313/gsd copying gsd/gsd.h -> build/lib.linux-aarch64-cpython-313/gsd copying gsd/libgsd.pxd -> build/lib.linux-aarch64-cpython-313/gsd copying gsd/test/pytest.ini -> build/lib.linux-aarch64-cpython-313/gsd/test copying gsd/test/test_gsd_v1.gsd -> build/lib.linux-aarch64-cpython-313/gsd/test running build_ext building 'gsd.fl' extension creating build/temp.linux-aarch64-cpython-313/gsd aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-4.0.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Igsd -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c gsd/fl.c -o build/temp.linux-aarch64-cpython-313/gsd/fl.o aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-4.0.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Igsd -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c gsd/gsd.c -o build/temp.linux-aarch64-cpython-313/gsd/gsd.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-4.0.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/gsd/fl.o build/temp.linux-aarch64-cpython-313/gsd/gsd.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/gsd/fl.cpython-313-aarch64-linux-gnu.so installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/gsd copying build/lib.linux-aarch64-cpython-313/gsd/fl.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./gsd copying build/lib.linux-aarch64-cpython-313/gsd/libgsd.pxd -> build/bdist.linux-aarch64/wheel/./gsd copying build/lib.linux-aarch64-cpython-313/gsd/gsd.h -> build/bdist.linux-aarch64/wheel/./gsd copying build/lib.linux-aarch64-cpython-313/gsd/gsd.c -> build/bdist.linux-aarch64/wheel/./gsd copying build/lib.linux-aarch64-cpython-313/gsd/fl.pyx -> build/bdist.linux-aarch64/wheel/./gsd copying build/lib.linux-aarch64-cpython-313/gsd/fl.c -> build/bdist.linux-aarch64/wheel/./gsd creating build/bdist.linux-aarch64/wheel/gsd/test copying build/lib.linux-aarch64-cpython-313/gsd/test/test_gsd_v1.gsd -> build/bdist.linux-aarch64/wheel/./gsd/test copying build/lib.linux-aarch64-cpython-313/gsd/test/pytest.ini -> build/bdist.linux-aarch64/wheel/./gsd/test copying build/lib.linux-aarch64-cpython-313/gsd/test/conftest.py -> build/bdist.linux-aarch64/wheel/./gsd/test copying build/lib.linux-aarch64-cpython-313/gsd/test/test_fl.py -> build/bdist.linux-aarch64/wheel/./gsd/test copying build/lib.linux-aarch64-cpython-313/gsd/test/test_largefile.py -> build/bdist.linux-aarch64/wheel/./gsd/test copying build/lib.linux-aarch64-cpython-313/gsd/test/test_hoomd.py -> build/bdist.linux-aarch64/wheel/./gsd/test copying build/lib.linux-aarch64-cpython-313/gsd/__init__.py -> build/bdist.linux-aarch64/wheel/./gsd copying build/lib.linux-aarch64-cpython-313/gsd/__main__.py -> build/bdist.linux-aarch64/wheel/./gsd copying build/lib.linux-aarch64-cpython-313/gsd/conftest.py -> build/bdist.linux-aarch64/wheel/./gsd copying build/lib.linux-aarch64-cpython-313/gsd/hoomd.py -> build/bdist.linux-aarch64/wheel/./gsd copying build/lib.linux-aarch64-cpython-313/gsd/pygsd.py -> build/bdist.linux-aarch64/wheel/./gsd copying build/lib.linux-aarch64-cpython-313/gsd/pytest_plugin_validate.py -> build/bdist.linux-aarch64/wheel/./gsd copying build/lib.linux-aarch64-cpython-313/gsd/version.py -> build/bdist.linux-aarch64/wheel/./gsd running install_egg_info Copying gsd.egg-info to build/bdist.linux-aarch64/wheel/./gsd-4.0.0.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/gsd-4.0.0.dist-info/WHEEL creating '/build/reproducible-path/python-gsd-4.0.0/.pybuild/cpython3_3.13_gsd/.tmp-2xpl2gad/gsd-4.0.0-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'gsd/__init__.py' adding 'gsd/__main__.py' adding 'gsd/conftest.py' adding 'gsd/fl.c' adding 'gsd/fl.cpython-313-aarch64-linux-gnu.so' adding 'gsd/fl.pyx' adding 'gsd/gsd.c' adding 'gsd/gsd.h' adding 'gsd/hoomd.py' adding 'gsd/libgsd.pxd' adding 'gsd/pygsd.py' adding 'gsd/pytest_plugin_validate.py' adding 'gsd/version.py' adding 'gsd/test/conftest.py' adding 'gsd/test/pytest.ini' adding 'gsd/test/test_fl.py' adding 'gsd/test/test_gsd_v1.gsd' adding 'gsd/test/test_hoomd.py' adding 'gsd/test/test_largefile.py' adding 'gsd-4.0.0.dist-info/licenses/LICENSE' adding 'gsd-4.0.0.dist-info/METADATA' adding 'gsd-4.0.0.dist-info/WHEEL' adding 'gsd-4.0.0.dist-info/entry_points.txt' adding 'gsd-4.0.0.dist-info/top_level.txt' adding 'gsd-4.0.0.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built gsd-4.0.0-cp313-cp313-linux_aarch64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/python-gsd-4.0.0' doxygen warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 15 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'TCL_SUBST' at line 43 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 152 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 168 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 200 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 232 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 234 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 245 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 266 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 301 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 306 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 307 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 332 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.8 Notice: Output directory 'devdoc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/python-gsd-4.0.0/gsd Searching for files in directory /build/reproducible-path/python-gsd-4.0.0/gsd/test Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/python-gsd-4.0.0/gsd/gsd.h... Parsing file /build/reproducible-path/python-gsd-4.0.0/gsd/gsd.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file gsd/gsd.h... Generating file documentation... Generating docs for file gsd/gsd.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound gsd_byte_buffer... Generating docs for compound gsd_handle... Generating docs for compound gsd_header... Generating docs for compound gsd_index_buffer... Generating docs for compound gsd_index_entry... Generating docs for compound gsd_name_buffer... Generating docs for compound gsd_name_id_map... Generating docs for compound gsd_name_id_pair... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class gsd_byte_buffer Generating XML output for class gsd_handle Generating XML output for class gsd_header Generating XML output for class gsd_index_buffer Generating XML output for class gsd_index_entry Generating XML output for class gsd_name_buffer Generating XML output for class gsd_name_id_map Generating XML output for class gsd_name_id_pair Generating XML output for file gsd.h Generate XML output for dir /build/reproducible-path/python-gsd-4.0.0/gsd/ Running plantuml with JAVA... type lookup cache used 135/65536 hits=373 misses=144 symbol lookup cache used 173/65536 hits=542 misses=173 finished... PYTHONPATH=/build/reproducible-path/python-gsd-4.0.0/.pybuild/cpython3_3.13_gsd/build READTHEDOCS=True sphinx-build -b html doc /build/reproducible-path/python-gsd-4.0.0/.pybuild/html # HTML generator Running Sphinx v8.1.3 loading translations [en]... done /usr/lib/python3/dist-packages/breathe/project.py:116: RemovedInSphinx90Warning: Sphinx 9 will drop support for representing paths as strings. Use "pathlib.Path" or "os.fspath" instead. self._default_build_dir = os.path.dirname(app.doctreedir.rstrip(os.sep)) making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. loading intersphinx inventory 'python' from /usr/share/doc/python3/html/objects.inv ... loading intersphinx inventory 'numpy' from /usr/share/doc/python-numpy/html/objects.inv ... building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 22 source files that are out of date updating environment: [new config] 22 added, 0 changed, 0 removed reading sources... [ 5%] c-api reading sources... [ 9%] changes reading sources... [ 14%] cli reading sources... [ 18%] community reading sources... [ 23%] contributing reading sources... [ 27%] credits reading sources... [ 32%] file-layer reading sources... [ 36%] fl-examples /usr/lib/python3/dist-packages/IPython/paths.py:69: UserWarning: IPython parent '/nonexistent/first-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' reading sources... [ 41%] hoomd-examples /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms implicit data copy when writing chunk: log/invalid /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' reading sources... [ 45%] index reading sources... [ 50%] indices reading sources... [ 55%] installation reading sources... [ 59%] license reading sources... [ 64%] python-api reading sources... [ 68%] python-module-gsd.fl /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' reading sources... [ 73%] python-module-gsd.hoomd /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: This is now an optional IPython functionality, setting bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: This is now an optional IPython functionality, using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' reading sources... [ 77%] python-module-gsd.pygsd reading sources... [ 82%] python-module-gsd.version reading sources... [ 86%] schema-hoomd reading sources... [ 91%] shapes reading sources... [ 95%] specification reading sources... [100%] style /build/reproducible-path/python-gsd-4.0.0/doc/c-api.rst:12: WARNING: Invalid C declaration: Expected identifier in nested name. [error at 0] ^ /build/reproducible-path/python-gsd-4.0.0/doc/c-api.rst:12: WARNING: Invalid C declaration: Expected identifier in nested name. [error at 0] ^ docstring of gsd.fl.GSDFile.chunk_exists:13: ERROR: Error in "highlight" directive: no content permitted. .. highlight:: python with gsd.fl.open(name='file.gsd', mode='w', application="My application", schema="My Schema", schema_version=[1,0]) as f: f.write_chunk(name='chunk1', data=numpy.array([1,2,3,4], dtype=numpy.float32)) f.write_chunk(name='chunk2', data=numpy.array([[5,6],[7,8]], dtype=numpy.float32)) f.end_frame() f.write_chunk(name='chunk1', data=numpy.array([9,10,11,12], dtype=numpy.float32)) f.write_chunk(name='chunk2', data=numpy.array([[13,14],[15,16]], dtype=numpy.float32)) f.end_frame() f = gsd.fl.open(name='file.gsd', mode='r', application="My application", schema="My Schema", schema_version=[1,0]) f.chunk_exists(frame=0, name='chunk1') f.chunk_exists(frame=0, name='chunk2') f.chunk_exists(frame=0, name='chunk3') f.chunk_exists(frame=10, name='chunk1') f.close() [docutils] docstring of gsd.fl.GSDFile.truncate:10: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils] docstring of gsd.fl.GSDFile.truncate:14: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] docstring of gsd.fl.GSDFile.truncate:19: WARNING: Definition list ends without a blank line; unexpected unindent. [docutils] looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/python-gsd-4.0.0/.pybuild/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-gsd-4.0.0/.pybuild/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-gsd-4.0.0/.pybuild/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-gsd-4.0.0/.pybuild/html/_static/copybutton.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 5%] c-api writing output... [ 9%] changes writing output... [ 14%] cli writing output... [ 18%] community writing output... [ 23%] contributing writing output... [ 27%] credits writing output... [ 32%] file-layer writing output... [ 36%] fl-examples writing output... [ 41%] hoomd-examples writing output... [ 45%] index writing output... [ 50%] indices writing output... [ 55%] installation writing output... [ 59%] license writing output... [ 64%] python-api writing output... [ 68%] python-module-gsd.fl writing output... [ 73%] python-module-gsd.hoomd writing output... [ 77%] python-module-gsd.pygsd writing output... [ 82%] python-module-gsd.version writing output... [ 86%] schema-hoomd writing output... [ 91%] shapes writing output... [ 95%] specification writing output... [100%] style /build/reproducible-path/python-gsd-4.0.0/.pybuild/cpython3_3.13_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.BondData:13: WARNING: 'any' reference target not found: hoomd.State [ref.any] /build/reproducible-path/python-gsd-4.0.0/.pybuild/cpython3_3.13_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ConstraintData:11: WARNING: 'any' reference target not found: hoomd.State [ref.any] /build/reproducible-path/python-gsd-4.0.0/.pybuild/cpython3_3.13_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:11: WARNING: 'any' reference target not found: hoomd.State [ref.any] /build/reproducible-path/python-gsd-4.0.0/doc/schema-hoomd.rst:21: WARNING: 'any' reference target not found: hoomd.State [ref.any] generating indices... genindex py-modindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 10 warnings. The HTML pages are in ../../build/reproducible-path/python-gsd-4.0.0/.pybuild/html. make[1]: Leaving directory '/build/reproducible-path/python-gsd-4.0.0' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-gsd-4.0.0/.pybuild/cpython3_3.13_gsd/build; python3.13 -m pytest /build/reproducible-path/python-gsd-4.0.0/gsd/test ============================= test session starts ============================== platform linux -- Python 3.13.5, pytest-8.3.5, pluggy-1.6.0 rootdir: /build/reproducible-path/python-gsd-4.0.0/gsd/test configfile: pytest.ini plugins: typeguard-4.4.2 collected 141 items ../../../gsd/test/test_fl.py ........................................... [ 30%] ............................................. [ 62%] ../../../gsd/test/test_hoomd.py ........................................ [ 90%] .......... [ 97%] ../../../gsd/test/test_largefile.py ... [100%] =============================== warnings summary =============================== ../../../gsd/test/test_largefile.py:15 /build/reproducible-path/python-gsd-4.0.0/gsd/test/test_largefile.py:15: PytestUnknownMarkWarning: Unknown pytest.mark.validate - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.validate -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 141 passed, 1 warning in 45.90s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-gsd-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-gsd-doc/usr/share/doc/python-gsd-doc/html/_static/copybutton.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-gsd-doc/usr/share/doc/python-gsd-doc/html/_static/copybutton_funcs.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-gsd-doc/usr/share/doc/python-gsd-doc/html/_static/clipboard.min.js dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/python3-gsd/usr/bin/gsd dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_numpy3 -O--buildsystem=pybuild Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-gsd-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-gsd' in '../python3-gsd_4.0.0-1_arm64.deb'. dpkg-deb: building package 'python-gsd-doc' in '../python-gsd-doc_4.0.0-1_all.deb'. dpkg-deb: building package 'python3-gsd-dbgsym' in '../python3-gsd-dbgsym_4.0.0-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-gsd_4.0.0-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-gsd_4.0.0-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-gsd-4.0.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2672740 and its subdirectories I: Current time: Sun Aug 17 03:07:46 -12 2025 I: pbuilder-time-stamp: 1755443266 Sun Aug 17 15:07:47 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sun Aug 17 15:07:47 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sun Aug 17 15:11:09 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sun Aug 17 15:11:10 UTC 2025 I: python-gsd_4.0.0-1_arm64.changes: Format: 1.8 Date: Mon, 11 Aug 2025 10:32:38 +0200 Source: python-gsd Binary: python-gsd-doc python3-gsd python3-gsd-dbgsym Architecture: all arm64 Version: 4.0.0-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Drew Parsons Description: python-gsd-doc - native file format for HOOMD-blue (documentation) python3-gsd - native file format for HOOMD-blue (Python 3 module) Changes: python-gsd (4.0.0-1) unstable; urgency=medium . * New upstream release * Build-Depends: dh-sequence-numpy3 to provide and apply dh_numpy3 * Standards-Version: 4.7.2 Checksums-Sha1: 0a626eaaf91b0ca180e28f02147ea79f3ca8f38c 131172 python-gsd-doc_4.0.0-1_all.deb f85774468728267597e7bdd3d2e558ea4e2c911d 11208 python-gsd_4.0.0-1_arm64.buildinfo 83337711c4966f13323a668302a0ff015400b6e7 352588 python3-gsd-dbgsym_4.0.0-1_arm64.deb 5acd1edcad783da52e848398c53ecc7d934845ed 199244 python3-gsd_4.0.0-1_arm64.deb Checksums-Sha256: d3fcc5fd147d709c77f39348256effa7d2f45208949c754577f9baab8a9d5558 131172 python-gsd-doc_4.0.0-1_all.deb 8999a653d35d24b87bfa5fe3263f374207fe3c93613d704408a9c59715d3092f 11208 python-gsd_4.0.0-1_arm64.buildinfo 5798ffa3cdbcc4d41ca32cdcad5d592ec339d65116f1d23f50bfa30454b0bde6 352588 python3-gsd-dbgsym_4.0.0-1_arm64.deb 67c764469a5d5dd382efea44a09505fb4892116bfee5b1be23cd90ed3083cf24 199244 python3-gsd_4.0.0-1_arm64.deb Files: 0306378ac5ebc0974bebf0dce8f6a3ca 131172 doc optional python-gsd-doc_4.0.0-1_all.deb 743809f56b0a3069e69209286b03f9bb 11208 python optional python-gsd_4.0.0-1_arm64.buildinfo 7fc83ebe571587175d16008e7a89374c 352588 debug optional python3-gsd-dbgsym_4.0.0-1_arm64.deb d68d13e390c6042e86d896123964f66e 199244 python optional python3-gsd_4.0.0-1_arm64.deb Sun Aug 17 15:11:10 UTC 2025 I: diffoscope 303 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_8-83610.service; invocation ID: 258c7e7b236e4f3cbe4165ec92799b3b # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.wlINol3s/python-gsd_4.0.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.wlINol3s/python-gsd_4.0.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.wlINol3s/python-gsd_4.0.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.wlINol3s/b1/python-gsd_4.0.0-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.wlINol3s/b2/python-gsd_4.0.0-1_arm64.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer ## command (total time: 0.260s) 0.114s 8 calls diff 0.103s 11 calls js-beautify 0.027s 6 calls xz 0.007s 11 calls html2text 0.005s 3 calls cmp 0.004s 3 calls cmp (external) 0.001s 16 calls cmp (internal) ## compare_files (cumulative) (total time: 7.466s) 1.548s 1 call abc.DotChangesFile 1.534s 1 call abc.DebFile 1.521s 2 calls abc.XzFile 1.472s 1 call abc.DebDataTarFile 1.261s 1 call abc.JavaScriptFile 0.104s 1 call abc.HtmlFile 0.020s 1 call abc.TarFile 0.006s 1 call abc.Md5sumsFile ## container_extract (total time: 0.059s) 0.028s 144 calls diffoscope.comparators.deb.DebTarContainer 0.027s 6 calls diffoscope.comparators.xz.XzContainer 0.002s 8 calls diffoscope.comparators.deb.DebContainer 0.002s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.010s) 0.010s 25 calls linediff ## has_same_content_as (total time: 0.006s) 0.003s 3 calls abc.DebFile 0.002s 1 call abc.DebDataTarFile 0.000s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 2 calls abc.TextFile 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 1 call abc.TarFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.HtmlFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.JavaScriptFile ## main (total time: 1.911s) 1.908s 2 calls outputs 0.004s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.114s) 0.114s 1 call html 0.000s 1 call text 0.000s 1 call json ## recognizes (total time: 0.058s) 0.032s 584 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile 0.007s 264 calls diffoscope.comparators.utils.archive.ArchiveMember 0.003s 162 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.277s) 0.277s 18 calls specialize Finished with result: success Main processes terminated with: code=exited, status=1/FAILURE Service runtime: 2.148s CPU time consumed: 1.694s Memory peak: 67.7M (swap: 0B) Sun Aug 17 15:11:13 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sun Aug 17 15:11:13 UTC 2025 E: python-gsd failed to build reproducibly in forky on arm64. Sun Aug 17 15:11:14 UTC 2025 I: Removing signed python-gsd_4.0.0-1_arm64.buildinfo.asc files: removed './b1/python-gsd_4.0.0-1_arm64.buildinfo.asc' removed './b2/python-gsd_4.0.0-1_arm64.buildinfo.asc'