Mon Sep 15 01:22:35 UTC 2025 I: starting to build python-pyvcf/forky/arm64 on jenkins on '2025-09-15 01:22' Mon Sep 15 01:22:35 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/99493/console.log Mon Sep 15 01:22:35 UTC 2025 I: Downloading source for forky/python-pyvcf=0.6.8+git20170215.476169c-11 --2025-09-15 01:22:35-- http://deb.debian.org/debian/pool/main/p/python-pyvcf/python-pyvcf_0.6.8%2bgit20170215.476169c-11.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2377 (2.3K) [text/prs.lines.tag] Saving to: ‘python-pyvcf_0.6.8+git20170215.476169c-11.dsc’ 0K .. 100% 284M=0s 2025-09-15 01:22:35 (284 MB/s) - ‘python-pyvcf_0.6.8+git20170215.476169c-11.dsc’ saved [2377/2377] Mon Sep 15 01:22:35 UTC 2025 I: python-pyvcf_0.6.8+git20170215.476169c-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pyvcf Binary: python3-vcf, pyvcf, python-pyvcf-examples Architecture: any all Version: 0.6.8+git20170215.476169c-11 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/jamescasbon/PyVCF Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pyvcf Vcs-Git: https://salsa.debian.org/med-team/python-pyvcf.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-pytest , python3-pysam Package-List: python-pyvcf-examples deb python optional arch=all python3-vcf deb python optional arch=any pyvcf deb python optional arch=all Checksums-Sha1: fd87bba83272c2a1bbdb7ab633ef90e4b12b3836 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 5680a335404c24260efb2e8488ea18f7ebd87618 10704 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz Checksums-Sha256: df89a50c3b0faed0acffe86377ceca77053b2fc516de95e4a14623bbef42fb87 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 128b98a270b89df23931de8204327c4771d550a82b94a842d3698d486be89a48 10704 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz Files: 257a20310260fb287a7ec4f2b5a35678 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 975be4f7a144d117a49cea17c46d0410 10704 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEUtW9Dn1NsITjS1hl1KQc+t2yDbUFAmdF98kACgkQ1KQc+t2y DbUyCxAApjDfCXzyHbFQuojN4hIm2y77pRuuMzCl7h1hJcBD84cBMysyKHqtozqj dL05JodJSNKXIZCJK8t1s0fJendb8Sxhc5gIDgOj4tmO7E543LyXSVAoLtzgh0WA Br3BSXzB3f63+KcIzDOb3C1bY7dx/3XxgkkRMtiNsvsl23GW0enrn5CeAFpWxzoi voNwvHbqfysHnwk0YhdQ1jZytQ2NdcV3Fpo3Z04Isv5FQ8yFsUtXP9RdDgmNCX+y K+Ws1cWU8vX8+kLVLguRyAXsl+tk4jT+Q0JdG2TJgF+fha2WvdWl0tyuLUnDgKuw ptloHlvHZWRYDLJIt94xoR6ZXn7yKJn70M/zjqhu0sksm1Ssg4Zvhi51HL6Syzx+ 1dHSbmnMk8tQugxi22FGRt5+6Kv6NYZR250T0d6UDORJZL80LhyOabUQ9FEhVLLn /rLbVZmd/GIMdojsBZn4K/ZpWdx2U18NRUZHrcYLjDkcAQHli+iyN7Qb2q7kcyKg W9tP2bTRyYbnst1Dal7T/BOCXzfrhAC5BAZdQ9gtcA4urGEaWrzre8qCoGwl4bc1 yghmsjfpwXXm0Q6/Jbeom5iml7JPpIvlxfKoCIuVvfh8gFWQkLiSWnsHWVCj1fhe SVp4YPmOnItQ3jSb+WU6kue2exmyekwfpqyjAgqo5h6NkM7r3Yk= =6lNL -----END PGP SIGNATURE----- Mon Sep 15 01:22:35 UTC 2025 I: Checking whether the package is not for us Mon Sep 15 01:22:35 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Mon Sep 15 01:22:35 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Mon Sep 15 01:23:29 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 13:22:37 -12 2025 I: pbuilder-time-stamp: 1757899357 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyvcf_0.6.8+git20170215.476169c-11.dsc] I: copying [./python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz] I: copying [./python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pyvcf_0.6.8+git20170215.476169c-11.dsc: no acceptable signature found dpkg-source: info: extracting python-pyvcf in python-pyvcf-0.6.8+git20170215.476169c dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-setuptools.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying quitechar.patch dpkg-source: info: applying replace-pkg-resources-with-importlib.patch dpkg-source: info: applying replace-distutils-with-setuptools.patch dpkg-source: info: applying use-raw-strings-for-regex.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3398960/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='a6d6a1969f764a5985d66ec081b0ddb8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3398960' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yMGb6COo/pbuilderrc_Uwc4 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yMGb6COo/b1 --logfile b1/build.log python-pyvcf_0.6.8+git20170215.476169c-11.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3398960/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-pytest, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjs-sphinxdoc{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 37.8 MB of archives. After unpacking 178 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-2 [93.9 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 37 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.9-3 [1375 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 55 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libcurl3t64-gnutls arm64 8.15.0-1 [355 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.1-2 [145 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.7-1 [1978 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.7-1 [4924 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.5-1 [10.4 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.5-1 [1068 B] Get: 78 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.5-1 [1044 B] Get: 79 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.7-1 [504 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.5-1 [26.1 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.5-1 [1068 B] Get: 82 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 88 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 94 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 python3-pysam arm64 0.23.0+ds-1+b1 [3417 kB] Get: 97 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.3.5-2 [250 kB] Fetched 37.8 MB in 0s (118 MB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... 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Unpacking python3-pytest (8.3.5-2) ... Setting up libhtscodecs2:arm64 (1.6.1-2) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up libdeflate0:arm64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Sep 15 01:23:03 UTC 2025. Universal Time is now: Mon Sep 15 01:23:03 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:arm64 (2.7.1-2) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libjs-sphinxdoc (8.2.3-6) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.8.0-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:arm64 (1.11.0-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up readline-common (8.3-3) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.7-1) ... Setting up libpython3-stdlib:arm64 (3.13.5-1) ... Setting up libpython3.13:arm64 (3.13.7-1) ... Setting up libgnutls30t64:arm64 (3.8.9-3) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-packaging (25.0-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libpython3.13-dev:arm64 (3.13.7-1) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-pluggy (1.6.0-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.11.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:arm64 (3.13.5-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-typeguard (4.4.4-1) ... Setting up libcurl3t64-gnutls:arm64 (8.15.0-1) ... Setting up python3-all (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:arm64 (3.13.5-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.5-1) ... Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.5-1) ... Setting up python3-pysam (0.23.0+ds-1+b1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyvcf_0.6.8+git20170215.476169c-11_source.changes dpkg-buildpackage: info: source package python-pyvcf dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Ananthu C V dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running egg_info creating PyVCF.egg-info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt writing manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. Compiling vcf/cparse.pyx because it changed. [1/1] Cythonizing vcf/cparse.pyx building 'vcf.cparse' extension creating build/temp.linux-aarch64-cpython-313/vcf aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c vcf/cparse.c -o build/temp.linux-aarch64-cpython-313/vcf/cparse.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/vcf/cparse.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. running build_scripts creating build/scripts-3.13 copying and adjusting scripts/vcf_melt -> build/scripts-3.13 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.13 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.13 changing mode of build/scripts-3.13/vcf_melt from 644 to 755 changing mode of build/scripts-3.13/vcf_filter.py from 644 to 755 changing mode of build/scripts-3.13/vcf_sample_filter.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf; cp -r /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/test /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/ mkdir: cannot create directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf': File exists I: pybuild base:311: cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.3.5, pluggy-1.6.0 rootdir: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c plugins: typeguard-4.4.4 collected 104 items vcf/test/test_vcf.py ................................................... [ 49%] ........................................ss.ss........ [100%] ======================== 100 passed, 4 skipped in 2.07s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/sample_filter.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/filters.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/model.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/parser.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/test_vcf.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/README.md -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/prof.py to prof.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/filters.py to filters.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/model.py to model.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/sample_filter.py to sample_filter.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/parser.py to parser.cpython-313.pyc running install_egg_info Copying PyVCF.egg-info to /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_melt -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755 debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' # move testdata to separate dir mkdir -p debian/python-pyvcf-examples/usr/share/doc/python3-vcf mv `find debian/python3-vcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python3-vcf find debian/python3-vcf -type d -name test | xargs rm -rf find debian/python-pyvcf-examples/usr/share/doc/python3-vcf -name "__pycache__" | xargs rm -rf mkdir -p debian/pyvcf/usr mv debian/python3-vcf/usr/bin debian/pyvcf/usr # strip .py extension for py in debian/pyvcf/usr/bin/*.py ; do \ mv ${py} debian/pyvcf/usr/bin/`basename ${py} .py` ; \ done make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_python3 --verbose D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '--verbose'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None) D: dh_python3 dh_python3:183: supported Python versions: 3.13 (default=3.13) D: dh_python3 debhelper:166: skipping package python-pyvcf-examples (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=python-pyvcf, binary packages=['python3-vcf', 'pyvcf'] D: dh_python3 dh_python3:205: processing package python3-vcf... D: dh_python3 fs:50: moving files from debian/python3-vcf/usr/lib/python3.13/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-vcf details = {'requires.txt': set(), 'egg-info': {'debian/python3-vcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-vcf D: dh_python3 depends:253: D={'python3 (>= 3.13~)', 'python3:any', 'python3 (<< 3.14)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:205: processing package pyvcf... I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_sample_filter I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_filter I: dh_python3 tools:114: replacing shebang in debian/pyvcf/usr/bin/vcf_melt D: dh_python3 fs:338: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package pyvcf D: dh_python3 depends:253: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-vcf-dbgsym' in '../python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_arm64.deb'. dpkg-deb: building package 'python3-vcf' in '../python3-vcf_0.6.8+git20170215.476169c-11_arm64.deb'. dpkg-deb: building package 'pyvcf' in '../pyvcf_0.6.8+git20170215.476169c-11_all.deb'. dpkg-deb: building package 'python-pyvcf-examples' in '../python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo dpkg-genchanges --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3398960 and its subdirectories I: Current time: Sun Sep 14 13:23:28 -12 2025 I: pbuilder-time-stamp: 1757899408 Mon Sep 15 01:23:29 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Mon Sep 15 01:23:29 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Mon Sep 15 01:24:27 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Mon Sep 15 01:24:27 UTC 2025 I: python-pyvcf_0.6.8+git20170215.476169c-11_arm64.changes: Format: 1.8 Date: Tue, 26 Nov 2024 21:49:45 +0530 Source: python-pyvcf Binary: python-pyvcf-examples python3-vcf python3-vcf-dbgsym pyvcf Architecture: all arm64 Version: 0.6.8+git20170215.476169c-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Ananthu C V Description: python-pyvcf-examples - Example data for Variant Call Format (VCF) parser for Python python3-vcf - Variant Call Format (VCF) parser for Python 3 pyvcf - helper scripts for Variant Call Format (VCF) parser Closes: 1079359 1083698 Changes: python-pyvcf (0.6.8+git20170215.476169c-11) unstable; urgency=medium . * Team upload. * Drop dependency on python3-pkg-resources (Closes: #1083698) * Fix patch header format * Use setuptools instead of deprecated distutils * Use raw strings to prevent invalid escape sequences in regex (Closes: 1079359) * Use execute_after target instead of overriding dh_install * Bump standards version to 4.7.0 (no changes needed) Checksums-Sha1: cf46b813f3bf375d0c44def30b6845fe88d599ba 945160 python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb 8176ae299da8e6e36376e2dd66dbd0792667860b 7877 python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo f33190a0e653545f7bd3eb72230dccd8ae00304e 131836 python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_arm64.deb 590aaaf2f0f83bfb64a80f641f86101ce4a85af1 50452 python3-vcf_0.6.8+git20170215.476169c-11_arm64.deb 611b81db9b4545ae3de143786c3cb608112fd892 11468 pyvcf_0.6.8+git20170215.476169c-11_all.deb Checksums-Sha256: 32a3d99d82109541dc3d06bb38d70ed8c9bb442cdfb5803196c5d54a62f383b4 945160 python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb 4c6c6bca0acdec428a093436141bd6ce8edf018537a6693917ee831c8fa119a6 7877 python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo ea8ad19372c6661491fb7587c1d46467653a9c80bc1fe504c3e2411f3e6e47e3 131836 python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_arm64.deb c145ec53b0a89cf72150ca5b8aa182e0615720d7f8bcdc6457f84d914d933c52 50452 python3-vcf_0.6.8+git20170215.476169c-11_arm64.deb 27e908b06a33edb2f34b1ec33b7b7269762c175a60ff24ec3c26e31302bc510f 11468 pyvcf_0.6.8+git20170215.476169c-11_all.deb Files: fa5d6b8b108f02e304168b11669f483d 945160 python optional python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb 87e2b383474ed82fb3681236caded19a 7877 python optional python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo 22c4fb0f4ef4c20ca5d3ff6e5d19aaac 131836 debug optional python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_arm64.deb ff6d9f79a22aed6b6589a84df53bd180 50452 python optional python3-vcf_0.6.8+git20170215.476169c-11_arm64.deb e9169ad022c25a452adf6f34a14c3d4a 11468 python optional pyvcf_0.6.8+git20170215.476169c-11_all.deb Mon Sep 15 01:24:28 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_9-99493.service; invocation ID: 26d8b57fe9fb4276830d31455130c916 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.yMGb6COo/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.yMGb6COo/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.yMGb6COo/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.yMGb6COo/b1/python-pyvcf_0.6.8+git20170215.476169c-11_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.yMGb6COo/b2/python-pyvcf_0.6.8+git20170215.476169c-11_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 213ms CPU time consumed: 167ms Memory peak: 18M (swap: 0B) Mon Sep 15 01:24:29 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Mon Sep 15 01:24:29 UTC 2025 I: python-pyvcf from forky built successfully and reproducibly on arm64. Mon Sep 15 01:24:30 UTC 2025 I: Removing signed python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo.asc files: removed './b1/python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo.asc' removed './b2/python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo.asc'