Sat Sep 13 14:32:23 UTC 2025 I: starting to build r-bioc-gosemsim/forky/arm64 on jenkins on '2025-09-13 14:32' Sat Sep 13 14:32:23 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/97183/console.log Sat Sep 13 14:32:23 UTC 2025 I: Downloading source for forky/r-bioc-gosemsim=2.32.0-2 --2025-09-13 14:32:23-- http://deb.debian.org/debian/pool/main/r/r-bioc-gosemsim/r-bioc-gosemsim_2.32.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2221 (2.2K) [text/prs.lines.tag] Saving to: ‘r-bioc-gosemsim_2.32.0-2.dsc’ 0K .. 100% 283M=0s 2025-09-13 14:32:23 (283 MB/s) - ‘r-bioc-gosemsim_2.32.0-2.dsc’ saved [2221/2221] Sat Sep 13 14:32:23 UTC 2025 I: r-bioc-gosemsim_2.32.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-gosemsim Binary: r-bioc-gosemsim Architecture: any Version: 2.32.0-2 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/GOSemSim/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-gosemsim Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-gosemsim.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-annotationdbi, r-cran-dbi, r-cran-digest, r-bioc-go.db, r-cran-rlang, r-cran-r.utils, r-cran-yulab.utils, r-cran-rcpp, architecture-is-64-bit Package-List: r-bioc-gosemsim deb gnu-r optional arch=any Checksums-Sha1: 6d57b7a2e68b3be3037e38f937f24a8d3e3220cc 610829 r-bioc-gosemsim_2.32.0.orig.tar.gz c09e90f466f39a119565bbf40da16281b1d09477 6008 r-bioc-gosemsim_2.32.0-2.debian.tar.xz Checksums-Sha256: 9eca940624eb85bb8c3611ffc08f21b07a29e2b5d4bf37fdbc2d043d55af8562 610829 r-bioc-gosemsim_2.32.0.orig.tar.gz ed110d1e675565bd31f2a54182a9c0ac172a91ba9e6265ef94d64f24134ee401 6008 r-bioc-gosemsim_2.32.0-2.debian.tar.xz Files: 91ac358b6d115c6f33062c7e57ca4484 610829 r-bioc-gosemsim_2.32.0.orig.tar.gz 94c7dd9ff00ca57f8f1167a86f67c09e 6008 r-bioc-gosemsim_2.32.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmeFG5sSHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+bi/iAQAKII22rs6fyzGOX5/e+oi5dD1avw0vn8 zpV+0rmDuwiU8++oRyzKsAbfeZYPNjX/cv6ieFRH9PDr6sll859v5q3xHz+UQ6aq Y9bHlfiMzZZtSuIr/5DDC/jxF1xHCrGwTa9HVqEUo38IoneVEQmj/1ADvPycQiC3 zRd+BKwBVu3pte8JcsLt3nhF1FdiKOGtI31cMEvhDA6+Ao32+u6JSo0azBcddX14 1MCKJh9ASncaUnZwyHkV5peLaxTmzsCmX95mZs4A4UVovjSerhLT8sjQKWcNfLIt yE3QsRJgcejJ7uVSvydnjl2lNf9U57JGGHFeOK7iNi4ZkDq+nxjVs4dKgvWCIE6a Ryu8NL9cMRrjYBKSZMhPnsfI2j96Tjg6AumeeZ5EOFwlptpzj6TYDAgjfwLz+/2r GDP6CKrKb7nqe4BY8FGQ8P0qBDHojOq/NV8xxJNw4g2q+8zwc1cDnvQloZko16oa jsUBSIchbLv2SZPP8Vjir2cXFQVZUB1+OkbzFrDYG1DyrXihTxpiYgnbWUE+wiu7 fd78kwtOmsX7c00kxipJ7P3P4BwCrj33lhvLNZ4Rbiw7+5xp8SYn8OmqTMZV/30X hsSZID2yrTuHFF+B3Ji/frm5W/tL2n0hp2i5D6ZBqQpyNH1qXK/Bfkik7BVInskq ZeZaBXqLCp1U =KG5P -----END PGP SIGNATURE----- Sat Sep 13 14:32:23 UTC 2025 I: Checking whether the package is not for us Sat Sep 13 14:32:23 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sat Sep 13 14:32:23 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sat Sep 13 14:33:27 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 16 08:55:24 -12 2026 I: pbuilder-time-stamp: 1792184124 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-gosemsim_2.32.0-2.dsc] I: copying [./r-bioc-gosemsim_2.32.0.orig.tar.gz] I: copying [./r-bioc-gosemsim_2.32.0-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./r-bioc-gosemsim_2.32.0-2.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-gosemsim in r-bioc-gosemsim-2.32.0 dpkg-source: info: unpacking r-bioc-gosemsim_2.32.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-gosemsim_2.32.0-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/843833/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='a7cff16bb75446f6b87ac80a211d2218' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='843833' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZoD7RNtz/pbuilderrc_WyBz --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZoD7RNtz/b1 --logfile b1/build.log r-bioc-gosemsim_2.32.0-2.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/843833/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-annotationdbi, r-cran-dbi, r-cran-digest, r-bioc-go.db, r-cran-rlang, r-cran-r.utils, r-cran-yulab.utils, r-cran-rcpp, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-annotationdbi; however: Package r-bioc-annotationdbi is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dbi; however: Package r-cran-dbi is not installed. pbuilder-satisfydepends-dummy depends on r-cran-digest; however: Package r-cran-digest is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-go.db; however: Package r-bioc-go.db is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rlang; however: Package r-cran-rlang is not installed. pbuilder-satisfydepends-dummy depends on r-cran-r.utils; however: Package r-cran-r.utils is not installed. pbuilder-satisfydepends-dummy depends on r-cran-yulab.utils; however: Package r-cran-yulab.utils is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-15-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-annotationdbi{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biostrings{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-go.db{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-s4vectors{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-askpass{a} r-cran-bit{a} r-cran-bit64{a} r-cran-blob{a} r-cran-cachem{a} r-cran-cli{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dbi{a} r-cran-digest{a} r-cran-fastmap{a} r-cran-fs{a} r-cran-glue{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-memoise{a} r-cran-mime{a} r-cran-openssl{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-png{a} r-cran-r.methodss3{a} r-cran-r.oo{a} r-cran-r.utils{a} r-cran-r6{a} r-cran-rcpp{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-sys{a} r-cran-vctrs{a} r-cran-yulab.utils{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-bench r-cran-brio r-cran-callr r-cran-covr r-cran-dbitest r-cran-decor r-cran-desc r-cran-dplyr r-cran-ff r-cran-generics r-cran-gert r-cran-ggplot2 r-cran-gh r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-jpeg r-cran-knitr r-cran-lintr r-cran-lobstr r-cran-magrittr r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-pillar r-cran-pkgdown r-cran-processx r-cran-progress r-cran-ps r-cran-r.rsp r-cran-readr r-cran-rmarkdown r-cran-roxygen2 r-cran-rprojroot r-cran-rstudioapi r-cran-rvest r-cran-scales r-cran-sf r-cran-sodium r-cran-spelling r-cran-testthat r-cran-tibble r-cran-tidyverse r-cran-usethis r-cran-waldo r-cran-whoami r-cran-withr r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 247 newly installed, 0 to remove and 0 not upgraded. Need to get 240 MB of archives. After unpacking 811 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 openssl arm64 3.5.2-1 [1457 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 ca-certificates all 20250419 [162 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-2 [93.9 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get: 19 http://deb.debian.org/debian forky/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 20 http://deb.debian.org/debian forky/main arm64 ucf all 3.0052 [43.3 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 22 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 34 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 zip arm64 3.0-15 [227 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 unzip arm64 6.0-29 [163 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libpaper2 arm64 2.2.5-0.3+b2 [16.6 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libpaper-utils arm64 2.2.5-0.3+b2 [16.4 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 70 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.9-3 [1375 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.15.0-1 [360 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libglib2.0-0t64 arm64 2.84.4-3 [1428 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-3 [390 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 fontconfig arm64 2.15.0-2.4 [463 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 libgraphite2-3 arm64 1.3.14-3 [70.3 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 libharfbuzz0b arm64 11.4.5-1 [465 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 97 http://deb.debian.org/debian forky/main arm64 libdatrie1 arm64 0.2.13-4 [37.4 kB] Get: 98 http://deb.debian.org/debian forky/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 99 http://deb.debian.org/debian forky/main arm64 libpango-1.0-0 arm64 1.56.3-2 [222 kB] Get: 100 http://deb.debian.org/debian forky/main arm64 libpangoft2-1.0-0 arm64 1.56.3-2 [56.5 kB] Get: 101 http://deb.debian.org/debian forky/main arm64 libpangocairo-1.0-0 arm64 1.56.3-2 [35.3 kB] Get: 102 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 103 http://deb.debian.org/debian forky/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [982 kB] Get: 104 http://deb.debian.org/debian forky/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 105 http://deb.debian.org/debian forky/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 106 http://deb.debian.org/debian forky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 107 http://deb.debian.org/debian forky/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 108 http://deb.debian.org/debian forky/main arm64 libtiff6 arm64 4.7.0-4 [325 kB] Get: 109 http://deb.debian.org/debian forky/main arm64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get: 110 http://deb.debian.org/debian forky/main arm64 libtirpc3t64 arm64 1.3.6+ds-1 [79.1 kB] Get: 111 http://deb.debian.org/debian forky/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 112 http://deb.debian.org/debian forky/main arm64 x11-common all 1:7.7+25 [217 kB] Get: 113 http://deb.debian.org/debian forky/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 114 http://deb.debian.org/debian forky/main arm64 libtk8.6 arm64 8.6.17-1 [740 kB] Get: 115 http://deb.debian.org/debian forky/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 116 http://deb.debian.org/debian forky/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Get: 117 http://deb.debian.org/debian forky/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b2 [173 kB] Get: 118 http://deb.debian.org/debian forky/main arm64 r-base-core arm64 4.5.1-1 [28.4 MB] Get: 119 http://deb.debian.org/debian forky/main arm64 libgfortran-15-dev arm64 15.2.0-3 [431 kB] Get: 120 http://deb.debian.org/debian forky/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-3 [77.2 MB] Get: 121 http://deb.debian.org/debian forky/main arm64 gfortran-15 arm64 15.2.0-3 [17.8 kB] Get: 122 http://deb.debian.org/debian forky/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-1 [1280 B] Get: 123 http://deb.debian.org/debian forky/main arm64 gfortran arm64 4:15.2.0-1 [1428 B] Get: 124 http://deb.debian.org/debian forky/main arm64 libblas-dev arm64 3.12.1-7 [145 kB] Get: 125 http://deb.debian.org/debian forky/main arm64 liblapack-dev arm64 3.12.1-7 [3829 kB] Get: 126 http://deb.debian.org/debian forky/main arm64 libncurses6 arm64 6.5+20250216-2 [96.1 kB] Get: 127 http://deb.debian.org/debian forky/main arm64 libncurses-dev arm64 6.5+20250216-2 [340 kB] Get: 128 http://deb.debian.org/debian forky/main arm64 libreadline-dev arm64 8.3-3 [163 kB] Get: 129 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Get: 130 http://deb.debian.org/debian forky/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Get: 131 http://deb.debian.org/debian forky/main arm64 libpcre2-16-0 arm64 10.46-1 [247 kB] Get: 132 http://deb.debian.org/debian forky/main arm64 libpcre2-32-0 arm64 10.46-1 [238 kB] Get: 133 http://deb.debian.org/debian forky/main arm64 libpcre2-posix3 arm64 10.46-1 [64.1 kB] Get: 134 http://deb.debian.org/debian forky/main arm64 libpcre2-dev arm64 10.46-1 [750 kB] Get: 135 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 136 http://deb.debian.org/debian forky/main arm64 libpng-dev arm64 1.6.50-1 [361 kB] Get: 137 http://deb.debian.org/debian forky/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 138 http://deb.debian.org/debian forky/main arm64 liblzma-dev arm64 5.8.1-1.1 [344 kB] Get: 139 http://deb.debian.org/debian forky/main arm64 icu-devtools arm64 76.1-4 [200 kB] Get: 140 http://deb.debian.org/debian forky/main arm64 libicu-dev arm64 76.1-4 [10.6 MB] Get: 141 http://deb.debian.org/debian forky/main arm64 libxmuu1 arm64 2:1.1.3-3+b4 [22.0 kB] Get: 142 http://deb.debian.org/debian forky/main arm64 xauth arm64 1:1.1.2-1.1 [35.4 kB] Get: 143 http://deb.debian.org/debian forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 144 http://deb.debian.org/debian forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 145 http://deb.debian.org/debian forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 146 http://deb.debian.org/debian forky/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [192 kB] Get: 147 http://deb.debian.org/debian forky/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 148 http://deb.debian.org/debian forky/main arm64 libzstd-dev arm64 1.5.7+dfsg-1.1 [335 kB] Get: 149 http://deb.debian.org/debian forky/main arm64 r-base-dev all 4.5.1-1 [4360 B] Get: 150 http://deb.debian.org/debian forky/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 151 http://deb.debian.org/debian forky/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 152 http://deb.debian.org/debian forky/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 153 http://deb.debian.org/debian forky/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 154 http://deb.debian.org/debian forky/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 155 http://deb.debian.org/debian forky/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 156 http://deb.debian.org/debian forky/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 157 http://deb.debian.org/debian forky/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 158 http://deb.debian.org/debian forky/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 159 http://deb.debian.org/debian forky/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 160 http://deb.debian.org/debian forky/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 161 http://deb.debian.org/debian forky/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 162 http://deb.debian.org/debian forky/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 163 http://deb.debian.org/debian forky/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 164 http://deb.debian.org/debian forky/main arm64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get: 165 http://deb.debian.org/debian forky/main arm64 libdevel-callchecker-perl arm64 0.009-2 [15.7 kB] Get: 166 http://deb.debian.org/debian forky/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 167 http://deb.debian.org/debian forky/main arm64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get: 168 http://deb.debian.org/debian forky/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 169 http://deb.debian.org/debian forky/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 170 http://deb.debian.org/debian forky/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 171 http://deb.debian.org/debian forky/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 172 http://deb.debian.org/debian forky/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 173 http://deb.debian.org/debian forky/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 174 http://deb.debian.org/debian forky/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 175 http://deb.debian.org/debian forky/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 176 http://deb.debian.org/debian forky/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 177 http://deb.debian.org/debian forky/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 178 http://deb.debian.org/debian forky/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 179 http://deb.debian.org/debian forky/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 180 http://deb.debian.org/debian forky/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 181 http://deb.debian.org/debian forky/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 182 http://deb.debian.org/debian forky/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 183 http://deb.debian.org/debian forky/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 184 http://deb.debian.org/debian forky/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 185 http://deb.debian.org/debian forky/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 186 http://deb.debian.org/debian forky/main arm64 libmoose-perl arm64 2.2207-1+b3 [765 kB] Get: 187 http://deb.debian.org/debian forky/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 188 http://deb.debian.org/debian forky/main arm64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get: 189 http://deb.debian.org/debian forky/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 190 http://deb.debian.org/debian forky/main arm64 libsub-name-perl arm64 0.28-1 [12.1 kB] Get: 191 http://deb.debian.org/debian forky/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 192 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get: 193 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get: 194 http://deb.debian.org/debian forky/main arm64 libcurl3t64-gnutls arm64 8.15.0-1 [355 kB] Get: 195 http://deb.debian.org/debian forky/main arm64 libwww-curl-perl arm64 4.17-12 [57.7 kB] Get: 196 http://deb.debian.org/debian forky/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 197 http://deb.debian.org/debian forky/main arm64 dh-r all 20250812 [42.6 kB] Get: 198 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 199 http://deb.debian.org/debian forky/main arm64 r-cran-littler arm64 0.3.21-1 [106 kB] Get: 200 http://deb.debian.org/debian forky/main arm64 littler all 0.3.21-1 [16.9 kB] Get: 201 http://deb.debian.org/debian forky/main arm64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get: 202 http://deb.debian.org/debian forky/main arm64 r-bioc-biobase arm64 2.66.0-2 [2316 kB] Get: 203 http://deb.debian.org/debian forky/main arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2056 kB] Get: 204 http://deb.debian.org/debian forky/main arm64 r-bioc-iranges arm64 2.40.1-3 [2307 kB] Get: 205 http://deb.debian.org/debian forky/main arm64 r-cran-dbi all 1.2.3-1 [852 kB] Get: 206 http://deb.debian.org/debian forky/main arm64 r-cran-bit arm64 4.6.0+dfsg-1 [447 kB] Get: 207 http://deb.debian.org/debian forky/main arm64 r-cran-bit64 arm64 4.6.0-1-4 [491 kB] Get: 208 http://deb.debian.org/debian forky/main arm64 r-cran-rlang arm64 1.1.5-3 [1703 kB] Get: 209 http://deb.debian.org/debian forky/main arm64 r-cran-cli arm64 3.6.4-1 [1368 kB] Get: 210 http://deb.debian.org/debian forky/main arm64 r-cran-glue arm64 1.8.0-1 [165 kB] Get: 211 http://deb.debian.org/debian forky/main arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 212 http://deb.debian.org/debian forky/main arm64 r-cran-vctrs arm64 0.6.5-1+b2 [1380 kB] Get: 213 http://deb.debian.org/debian forky/main arm64 r-cran-blob all 1.2.4-1 [49.6 kB] Get: 214 http://deb.debian.org/debian forky/main arm64 r-cran-fastmap arm64 1.2.0-1 [68.8 kB] Get: 215 http://deb.debian.org/debian forky/main arm64 r-cran-cachem arm64 1.1.0-1 [74.0 kB] Get: 216 http://deb.debian.org/debian forky/main arm64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 217 http://deb.debian.org/debian forky/main arm64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 218 http://deb.debian.org/debian forky/main arm64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get: 219 http://deb.debian.org/debian forky/main arm64 r-cran-cpp11 all 0.5.2-1 [226 kB] Get: 220 http://deb.debian.org/debian forky/main arm64 r-cran-rsqlite arm64 2.3.9-1 [1140 kB] Get: 221 http://deb.debian.org/debian forky/main arm64 r-cran-curl arm64 7.0.0+dfsg-1 [199 kB] Get: 222 http://deb.debian.org/debian forky/main arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [443 kB] Get: 223 http://deb.debian.org/debian forky/main arm64 r-cran-mime arm64 0.12-2+b1 [36.1 kB] Get: 224 http://deb.debian.org/debian forky/main arm64 r-cran-sys arm64 3.4.3-1 [44.2 kB] Get: 225 http://deb.debian.org/debian forky/main arm64 r-cran-askpass arm64 1.2.1-1 [24.4 kB] Get: 226 http://deb.debian.org/debian forky/main arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [400 kB] Get: 227 http://deb.debian.org/debian forky/main arm64 r-cran-r6 all 2.6.1-1 [106 kB] Get: 228 http://deb.debian.org/debian forky/main arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 229 http://deb.debian.org/debian forky/main arm64 r-cran-png arm64 0.1-8-1+b2 [41.3 kB] Get: 230 http://deb.debian.org/debian forky/main arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [9968 B] Get: 231 http://deb.debian.org/debian forky/main arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] Get: 232 http://deb.debian.org/debian forky/main arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.3 kB] Get: 233 http://deb.debian.org/debian forky/main arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] Get: 234 http://deb.debian.org/debian forky/main arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3848 kB] Get: 235 http://deb.debian.org/debian forky/main arm64 r-cran-crayon all 1.5.3-1 [165 kB] Get: 236 http://deb.debian.org/debian forky/main arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.4 MB] Get: 237 http://deb.debian.org/debian forky/main arm64 r-bioc-keggrest all 1.46.0+dfsg-3 [190 kB] Get: 238 http://deb.debian.org/debian forky/main arm64 r-bioc-annotationdbi all 1.68.0-2 [4703 kB] Get: 239 http://deb.debian.org/debian forky/main arm64 r-bioc-go.db all 3.20.0-2 [11.2 MB] Get: 240 http://deb.debian.org/debian forky/main arm64 r-cran-digest arm64 0.6.37-1 [204 kB] Get: 241 http://deb.debian.org/debian forky/main arm64 r-cran-fs arm64 1.6.5+dfsg-1 [246 kB] Get: 242 http://deb.debian.org/debian forky/main arm64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 243 http://deb.debian.org/debian forky/main arm64 r-cran-r.methodss3 all 1.8.2-1 [84.5 kB] Get: 244 http://deb.debian.org/debian forky/main arm64 r-cran-r.oo all 1.27.0-1 [983 kB] Get: 245 http://deb.debian.org/debian forky/main arm64 r-cran-r.utils all 2.13.0-1 [1433 kB] Get: 246 http://deb.debian.org/debian forky/main arm64 r-cran-rcpp arm64 1.1.0-1 [2096 kB] Get: 247 http://deb.debian.org/debian forky/main arm64 r-cran-yulab.utils all 0.2.0-1 [121 kB] Fetched 240 MB in 1s (226 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package tzdata. Preparing to unpack .../001-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libproc2-0:arm64. 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Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../009-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../010-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../011-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../012-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../013-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../014-bsdextrautils_2.41.1-2_arm64.deb ... Unpacking bsdextrautils (2.41.1-2) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../015-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../016-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package libtext-charwidth-perl:arm64. Preparing to unpack .../017-libtext-charwidth-perl_0.04-11+b4_arm64.deb ... Unpacking libtext-charwidth-perl:arm64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../018-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../019-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package architecture-properties:arm64. Preparing to unpack .../020-architecture-properties_0.2.6_arm64.deb ... Unpacking architecture-properties:arm64 (0.2.6) ... Selecting previously unselected package m4. Preparing to unpack .../021-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../022-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../023-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../024-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../025-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../026-dctrl-tools_2.24-3+b1_arm64.deb ... Unpacking dctrl-tools (2.24-3+b1) ... Selecting previously unselected package libdebhelper-perl. 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Unpacking xdg-utils (1.2.1-2) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../046-libblas3_3.12.1-7_arm64.deb ... Unpacking libblas3:arm64 (3.12.1-7) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../047-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../048-libpng16-16t64_1.6.50-1_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.50-1) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../049-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../050-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../051-fonts-dejavu-core_2.37-8_all.deb ... 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Preparing to unpack .../057-libxcb1_1.17.0-2+b1_arm64.deb ... Unpacking libxcb1:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../058-libx11-data_2%3a1.8.12-1_all.deb ... Unpacking libx11-data (2:1.8.12-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../059-libx11-6_2%3a1.8.12-1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.12-1) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../060-libxcb-render0_1.17.0-2+b1_arm64.deb ... Unpacking libxcb-render0:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../061-libxcb-shm0_1.17.0-2+b1_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../062-libxext6_2%3a1.3.4-1+b3_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1+b3) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../063-libxrender1_1%3a0.9.12-1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.12-1) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../064-libcairo2_1.18.4-1+b1_arm64.deb ... Unpacking libcairo2:arm64 (1.18.4-1+b1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../065-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../066-libcom-err2_1.47.2-3+b3_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../067-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../068-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../069-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../070-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../071-libidn2-0_2.3.8-4_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../072-libsasl2-modules-db_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../073-libsasl2-2_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../074-libldap2_2.6.10+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../075-libnghttp2-14_1.64.0-1.1+b1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../076-libnghttp3-9_1.8.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../077-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../078-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../079-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../080-libtasn1-6_4.20.0-2_arm64.deb ... 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Preparing to unpack .../086-libglib2.0-0t64_2.84.4-3_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.84.4-3) ... Selecting previously unselected package libicu76:arm64. Preparing to unpack .../087-libicu76_76.1-4_arm64.deb ... Unpacking libicu76:arm64 (76.1-4) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../088-libjpeg62-turbo_1%3a2.1.5-4_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-4) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../089-libgfortran5_15.2.0-3_arm64.deb ... Unpacking libgfortran5:arm64 (15.2.0-3) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../090-liblapack3_3.12.1-7_arm64.deb ... Unpacking liblapack3:arm64 (3.12.1-7) ... Selecting previously unselected package fontconfig. Preparing to unpack .../091-fontconfig_2.15.0-2.4_arm64.deb ... Unpacking fontconfig (2.15.0-2.4) ... Selecting previously unselected package libfribidi0:arm64. 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Preparing to unpack .../098-libpango-1.0-0_1.56.3-2_arm64.deb ... Unpacking libpango-1.0-0:arm64 (1.56.3-2) ... Selecting previously unselected package libpangoft2-1.0-0:arm64. Preparing to unpack .../099-libpangoft2-1.0-0_1.56.3-2_arm64.deb ... Unpacking libpangoft2-1.0-0:arm64 (1.56.3-2) ... Selecting previously unselected package libpangocairo-1.0-0:arm64. Preparing to unpack .../100-libpangocairo-1.0-0_1.56.3-2_arm64.deb ... Unpacking libpangocairo-1.0-0:arm64 (1.56.3-2) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../101-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../102-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../103-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.6+ds-1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../110-libxft2_2.3.6-1+b4_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b4) ... Selecting previously unselected package x11-common. Preparing to unpack .../111-x11-common_1%3a7.7+25_all.deb ... Unpacking x11-common (1:7.7+25) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../112-libxss1_1%3a1.2.3-1+b3_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b3) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../113-libtk8.6_8.6.17-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.17-1) ... Selecting previously unselected package libice6:arm64. 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Setting up libdeflate0:arm64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libpcre2-16-0:arm64 (10.46-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 16 20:55:55 UTC 2026. Universal Time is now: Fri Oct 16 20:55:55 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-15) ... Setting up libpackage-stash-xs-perl:arm64 (0.30-1+b4) ... Setting up autotools-dev (20240727.1) ... 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Setting up libblas-dev:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libncurses-dev:arm64 (6.5+20250216-2) ... Setting up gettext (0.23.1-2+b1) ... Setting up libpcre2-dev:arm64 (10.46-1) ... Setting up libxrender1:arm64 (1:0.9.12-1) ... Setting up libtool (2.5.4-5) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libpng-dev:arm64 (1.6.50-1) ... Setting up libjpeg-dev:arm64 (1:2.1.5-4) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:arm64 (0.009-2) ... Setting up libgfortran-15-dev:arm64 (15.2.0-3) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libglib2.0-0t64:arm64 (2.84.4-3) ... No schema files found: doing nothing. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up gfortran-15-aarch64-linux-gnu (15.2.0-3) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up liblapack-dev:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up icu-devtools (76.1-4) ... Setting up ucf (3.0052) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up xauth (1:1.1.2-1.1) ... Setting up groff-base (1.23.0-9) ... Setting up libharfbuzz0b:arm64 (11.4.5-1) ... Setting up gfortran-aarch64-linux-gnu (4:15.2.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:arm64 (2.15.0-2.4) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:arm64 (2:1.2.6-1) ... Setting up libicu-dev:arm64 (76.1-4) ... Setting up gfortran-15 (15.2.0-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libgnutls30t64:arm64 (3.8.9-3) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b4) ... Setting up libtirpc3t64:arm64 (1.3.6+ds-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.17-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libpango-1.0-0:arm64 (1.56.3-2) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libreadline-dev:arm64 (8.3-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:15.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.4-1+b1) ... Setting up libtirpc-dev:arm64 (1.3.6+ds-1) ... Setting up libmodule-runtime-perl (0.018-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2+b2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:arm64 (1.56.3-2) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.11.0-1) ... Setting up libpangocairo-1.0-0:arm64 (1.56.3-2) ... Setting up libcurl4t64:arm64 (8.15.0-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libcurl3t64-gnutls:arm64 (8.15.0-1) ... Setting up libwww-curl-perl:arm64 (4.17-12) ... Setting up debhelper (13.26) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.5.1-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.3-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-r6 (2.6.1-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... Setting up r-cran-littler (0.3.21-1) ... Setting up r-cran-fs (1.6.5+dfsg-1) ... Setting up r-cran-rcpp (1.1.0-1) ... Setting up r-cran-curl (7.0.0+dfsg-1) ... Setting up r-bioc-biocgenerics (0.52.0-2) ... Setting up r-cran-rlang (1.1.5-3) ... Setting up r-base-dev (4.5.1-1) ... Setting up littler (0.3.21-1) ... Setting up r-cran-sys (3.4.3-1) ... Setting up r-cran-plogr (0.2.0-3) ... Setting up r-cran-mime (0.12-2+b1) ... Setting up libmoose-perl:arm64 (2.2207-1+b3) ... Setting up r-cran-digest (0.6.37-1) ... Setting up r-cran-dbi (1.2.3-1) ... Setting up r-cran-glue (1.8.0-1) ... Setting up r-cran-bit (4.6.0+dfsg-1) ... Setting up r-cran-cli (3.6.4-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-bit64 (4.6.0-1-4) ... Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... Setting up r-cran-askpass (1.2.1-1) ... Setting up r-cran-fastmap (1.2.0-1) ... Setting up r-cran-png (0.1-8-1+b2) ... Setting up r-cran-r.methodss3 (1.8.2-1) ... Setting up r-bioc-biobase (2.66.0-2) ... Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-cpp11 (0.5.2-1) ... Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-cachem (1.1.0-1) ... Setting up r-bioc-iranges (2.40.1-3) ... Setting up r-cran-vctrs (0.6.5-1+b2) ... Setting up r-cran-openssl (2.3.2+dfsg-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-r.oo (1.27.0-1) ... Setting up r-cran-yulab.utils (0.2.0-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-blob (1.2.4-1) ... Setting up r-bioc-xvector (0.46.0-2) ... Setting up dh-r (20250812) ... Setting up r-cran-rsqlite (2.3.9-1) ... Setting up r-cran-r.utils (2.13.0-1) ... Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... Setting up r-bioc-annotationdbi (1.68.0-2) ... Setting up r-bioc-go.db (3.20.0-2) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-gosemsim-2.32.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-gosemsim_2.32.0-2_source.changes dpkg-buildpackage: info: source package r-bioc-gosemsim dpkg-buildpackage: info: source version 2.32.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-gosemsim/ -O--buildsystem=R I: R Package: GOSemSim Version: 2.32.0 I: Building using R version 4.5.1-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Mon, 13 Jan 2025 14:54:25 +0100 mkdir -p /build/reproducible-path/r-bioc-gosemsim-2.32.0/debian/r-bioc-gosemsim/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-gosemsim-2.32.0/debian/r-bioc-gosemsim/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 13 Jan 2025 14:54:25 +0100'" * installing *source* package 'GOSemSim' ... ** this is package 'GOSemSim' version '2.32.0' ** package 'GOSemSim' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++ (Debian 15.2.0-3) 15.2.0' make[1]: Entering directory '/build/reproducible-path/r-bioc-gosemsim-2.32.0/src' g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c ICmethod.cpp -o ICmethod.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o GOSemSim.so ICmethod.o RcppExports.o -L/usr/lib/R/lib -lR /usr/lib/R/lib/libR.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[1]: Leaving directory '/build/reproducible-path/r-bioc-gosemsim-2.32.0/src' make[1]: Entering directory '/build/reproducible-path/r-bioc-gosemsim-2.32.0/src' make[1]: Leaving directory '/build/reproducible-path/r-bioc-gosemsim-2.32.0/src' installing to /build/reproducible-path/r-bioc-gosemsim-2.32.0/debian/r-bioc-gosemsim/usr/lib/R/site-library/00LOCK-r-bioc-gosemsim-2.32.0/00new/GOSemSim/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GOSemSim) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-bioc-annotationhub for Suggests:AnnotationHub I: Using r-cran-biocmanager for Suggests:BiocManager W: Cannot find a debian package for Suggests:clusterProfiler W: Cannot find a debian package for Suggests:DOSE I: Using r-cran-knitr for Suggests:knitr I: Using r-bioc-org.hs.eg.db for Suggests:org.Hs.eg.db W: Cannot find a debian package for Suggests:prettydoc I: Using r-cran-rappdirs for Suggests:rappdirs I: Using r-cran-readr for Suggests:readr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-testthat for Suggests:testthat I: Using r-cran-tidyr for Suggests:tidyr I: Using r-cran-tidyselect for Suggests:tidyselect I: Using r-cran-rocr for Suggests:ROCR I: Using r-bioc-annotationdbi for Imports:AnnotationDbi I: Using r-cran-dbi for Imports:DBI I: Using r-cran-digest for Imports:digest I: Using r-bioc-go.db for Imports:GO.db I: Using r-cran-rlang for Imports:rlang I: Using r-cran-r.utils for Imports:R.utils I: Using r-cran-yulab.utils for Imports:yulab.utils (>= 0.1.6) I: Using r-cran-rcpp for LinkingTo:Rcpp I: BioConductor API version: r-api-bioc-3.20 I: Use r-bioc-gosemsim as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-gosemsim' in '../r-bioc-gosemsim_2.32.0-2_arm64.deb'. dpkg-deb: building package 'r-bioc-gosemsim-dbgsym' in '../r-bioc-gosemsim-dbgsym_2.32.0-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-gosemsim_2.32.0-2_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-gosemsim_2.32.0-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/843833 and its subdirectories I: Current time: Fri Oct 16 08:56:26 -12 2026 I: pbuilder-time-stamp: 1792184186 Sat Sep 13 14:33:28 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Sat Sep 13 14:33:28 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Sat Sep 13 14:34:39 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Sat Sep 13 14:34:40 UTC 2025 I: r-bioc-gosemsim_2.32.0-2_arm64.changes: Format: 1.8 Date: Mon, 13 Jan 2025 14:54:25 +0100 Source: r-bioc-gosemsim Binary: r-bioc-gosemsim r-bioc-gosemsim-dbgsym Architecture: arm64 Version: 2.32.0-2 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Michael R. Crusoe Description: r-bioc-gosemsim - GO-terms semantic similarity measures Changes: r-bioc-gosemsim (2.32.0-2) unstable; urgency=medium . * Team upload. * Upload to unstable. Checksums-Sha1: cff2ac8e109f103a98ba84130c2344c84489e325 482980 r-bioc-gosemsim-dbgsym_2.32.0-2_arm64.deb a74524e2dbeda179d1fa77a53a852f8cbf9cba94 11688 r-bioc-gosemsim_2.32.0-2_arm64.buildinfo 453229872a7ce38c297bf2b9dbcafc35b2f4fc3a 1105912 r-bioc-gosemsim_2.32.0-2_arm64.deb Checksums-Sha256: ac693ba5a3eb701aa1ca91e99aea5a690e0cb0239e13a5e3625ae49d1a49c617 482980 r-bioc-gosemsim-dbgsym_2.32.0-2_arm64.deb 89e6b57860b689a396bbd0b85101e5df29f8add6e5d9ff8522ace58a4279fec8 11688 r-bioc-gosemsim_2.32.0-2_arm64.buildinfo 583a80e6a9fe0ca19264063256c2b67bb44d1d797ddfd395646609c930a2f5c3 1105912 r-bioc-gosemsim_2.32.0-2_arm64.deb Files: 570bbaa53df6922a73f6edfefd14c266 482980 debug optional r-bioc-gosemsim-dbgsym_2.32.0-2_arm64.deb c6e79d4c68cd30d564812b80b329128c 11688 gnu-r optional r-bioc-gosemsim_2.32.0-2_arm64.buildinfo af5461173b6b3805e8ccbefaa6a4480d 1105912 gnu-r optional r-bioc-gosemsim_2.32.0-2_arm64.deb Sat Sep 13 14:34:40 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_4-97183.service; invocation ID: 592031cc1c234ffe9389864e00a37483 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZoD7RNtz/r-bioc-gosemsim_2.32.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZoD7RNtz/r-bioc-gosemsim_2.32.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZoD7RNtz/r-bioc-gosemsim_2.32.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZoD7RNtz/b1/r-bioc-gosemsim_2.32.0-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZoD7RNtz/b2/r-bioc-gosemsim_2.32.0-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 221ms CPU time consumed: 175ms Memory peak: 18.4M (swap: 0B) Sat Sep 13 14:34:41 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sat Sep 13 14:34:41 UTC 2025 I: r-bioc-gosemsim from forky built successfully and reproducibly on arm64. Sat Sep 13 14:34:41 UTC 2025 I: Removing signed r-bioc-gosemsim_2.32.0-2_arm64.buildinfo.asc files: removed './b1/r-bioc-gosemsim_2.32.0-2_arm64.buildinfo.asc' removed './b2/r-bioc-gosemsim_2.32.0-2_arm64.buildinfo.asc'