Mon Oct 13 05:57:45 UTC 2025 I: starting to build racon/forky/arm64 on jenkins on '2025-10-13 05:57' Mon Oct 13 05:57:45 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/103035/console.log Mon Oct 13 05:57:45 UTC 2025 I: Downloading source for forky/racon=1.5.0-4 --2025-10-13 05:57:45-- http://deb.debian.org/debian/pool/main/r/racon/racon_1.5.0-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2083 (2.0K) [text/prs.lines.tag] Saving to: ‘racon_1.5.0-4.dsc’ 0K .. 100% 248M=0s 2025-10-13 05:57:45 (248 MB/s) - ‘racon_1.5.0-4.dsc’ saved [2083/2083] Mon Oct 13 05:57:45 UTC 2025 I: racon_1.5.0-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: racon Binary: racon Architecture: any Version: 1.5.0-4 Maintainer: Debian Med Packaging Team Uploaders: Cédric Lood , Andreas Tille , Homepage: https://github.com/lbcb-sci/racon Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/racon Vcs-Git: https://salsa.debian.org/med-team/racon.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev, libspoa-dev, libthread-pool-dev, rampler Package-List: racon deb science optional arch=any Checksums-Sha1: c508bea6f7b627e1796f2017669a8e99ed548ddd 3084154 racon_1.5.0.orig.tar.gz f9bd29360d1b66565b64479d942f1229ec4a9c5c 20860 racon_1.5.0-4.debian.tar.xz Checksums-Sha256: 58fdbbd88f0990b18e3139280aa4fa81e138a9cf0761edd66c43982af784d395 3084154 racon_1.5.0.orig.tar.gz ea6078996048b26e021647cf41fc28045535f17c9bcac899d9fba970f7f4aeb7 20860 racon_1.5.0-4.debian.tar.xz Files: de1982c33464fc7cec8a172931a6cf00 3084154 racon_1.5.0.orig.tar.gz 02f4a85b3f6bdabda9fdf4994024961b 20860 racon_1.5.0-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmjoE3kRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHFqg//T3NEszxJZUUkDCTbKM1dcGpNf+fYNAz/ erE2amzIAZrs7c7HckR4e38w2vkvp4L3CT/D9Vytmlo/vA3Bp5rra/fLZ6rqUPzM igrYZsPugyA2o1Jclfylv8cU94w4j9O0XtWsox7hJ0hc1RTkzQ+bUqIZdg1Oa9a1 fLChhine3QzybH56EikfHYbPOYgyQGu82ZJXZ/1YQ4tMfoLECuZffINkZoFGv1vc m1aj2DssZpiljur3aoIuGTIuttHkfisVAfbRnm2/Sng8tg5vCrulHiF7FwH4IXIZ P3jyeINz06dqEvbptSMLqIvq6vKaQr316Ug6YELhy/7wvt+w1TcYMaUQqUcqRQoq QLd/dvTSp2pz67tNNi020j9tvBgABrManUJ+umfVRvwkakk8D0wSwIa6PmQPTY1H nAJE0QN2XkKb0ZO6LR5DMbdQas+ykGIc2TQVJ2+GJRZgx4dn1hEhX9iSJvEmmnCi H8pPLkNKVcgmE9NSn53qEuzkY10Jwh3MqyXBRLTL0fuP12HKHT2XhV/iHcO3aP6O zNfj09IsaKDWaijGQjO3rACMgviUoo2RjpHHrWHDoENW+RglmmKhWfxs/WbSVglx 8QJpGO3P52QTq+hWr/QEPoXxuFboKM0zOIxsYB0DQNXHLviaLCB2R3SdlKcBH6+C FctoSE8E6Bg= =sfw9 -----END PGP SIGNATURE----- Mon Oct 13 05:57:45 UTC 2025 I: Checking whether the package is not for us Mon Oct 13 05:57:45 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Mon Oct 13 05:57:45 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Mon Oct 13 06:02:08 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 12 17:57:47 -12 2025 I: pbuilder-time-stamp: 1760335067 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-4.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-4.dsc: no acceptable signature found dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 dpkg-source: info: applying gcc-15.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3074383/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='344b5736d2004ad188bf729f204c1c59' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3074383' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wxEiRMfB/pbuilderrc_GRYi --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wxEiRMfB/b1 --logfile b1/build.log racon_1.5.0-4.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3074383/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev, libspoa-dev, libthread-pool-dev, rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev; however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev; however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libtasn1-6{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 31.3 MB of archives. After unpacking 122 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-1 [94.3 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 29 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.16.0-4 [368 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get: 50 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 56 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 googletest all 1.17.0-1 [522 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libbiosoup-dev all 0.11.0-3 [7972 B] Get: 64 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libbioparser-dev all 3.1.0-2 [9208 B] Get: 66 http://deb.debian.org/debian forky/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.6 [98.2 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libcereal-dev arm64 1.3.2+dfsg-6 [221 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libedlib1 arm64 1.2.7-7 [19.1 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libedlib-dev arm64 1.2.7-7 [24.8 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libgtest-dev arm64 1.17.0-1 [247 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libspoa7.0.0 arm64 4.1.5-1 [53.7 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libspoa-dev arm64 4.1.5-1 [9656 B] Get: 73 http://deb.debian.org/debian forky/main arm64 libthread-pool-dev arm64 4.0.0-2 [7304 B] Get: 74 http://deb.debian.org/debian forky/main arm64 rampler arm64 2.1.1-1+b1 [21.2 kB] Fetched 31.3 MB in 0s (122 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_arm64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-2_arm64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-4_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp [ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp [ 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/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f 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-I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_test.dir/link.d CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (6 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (3 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (4 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (2 ms) [----------] 5 tests from RaconInitializeTest (20 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.000650 s [racon::Polisher::initialize] loaded sequences 0.072904 s [racon::Polisher::initialize] loaded overlaps 0.005846 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.051987 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.075975 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.113507 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.136380 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.165604 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.189931 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.251132 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.285527 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.311726 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.333056 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.354867 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.378492 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.411625 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.426757 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.467919 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.502188 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.523659 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.548266 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.574132 s [racon::Polisher::initialize] aligning overlaps [====================] 0.599884 s [racon::Polisher::initialize] transformed data into windows 0.001355 s [racon::Polisher::polish] generating consensus [=> ] 0.079272 s [racon::Polisher::polish] generating consensus [==> ] 0.148930 s [racon::Polisher::polish] generating consensus [===> ] 0.229639 s [racon::Polisher::polish] generating consensus [====> ] 0.281459 s [racon::Polisher::polish] generating consensus [=====> ] 0.331827 s [racon::Polisher::polish] generating consensus [======> ] 0.367356 s [racon::Polisher::polish] generating consensus [=======> ] 0.401726 s [racon::Polisher::polish] generating consensus [========> ] 0.437941 s [racon::Polisher::polish] generating consensus [=========> ] 0.503308 s [racon::Polisher::polish] generating consensus [==========> ] 0.557185 s [racon::Polisher::polish] generating consensus [===========> ] 0.661642 s [racon::Polisher::polish] generating consensus [============> ] 0.799076 s [racon::Polisher::polish] generating consensus [=============> ] 0.979904 s [racon::Polisher::polish] generating consensus [==============> ] 1.156282 s [racon::Polisher::polish] generating consensus [===============> ] 1.286487 s [racon::Polisher::polish] generating consensus [================> ] 1.366974 s [racon::Polisher::polish] generating consensus [=================> ] 1.484250 s [racon::Polisher::polish] generating consensus [==================> ] 1.489782 s [racon::Polisher::polish] generating consensus [===================>] 1.582001 s [racon::Polisher::polish] generating consensus [====================] 1.586104 s [racon::Polisher::] total = 2.278549 s [ OK ] RaconPolishingTest.ConsensusWithQualities (2294 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000460 s [racon::Polisher::initialize] loaded sequences 0.030134 s [racon::Polisher::initialize] loaded overlaps 0.000305 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.052697 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.071829 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.094494 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.128185 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.140445 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.149275 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.191244 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.220088 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.236984 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.250099 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.275171 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.302099 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.322273 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.337990 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.365325 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.412389 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.428402 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.429582 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.450554 s [racon::Polisher::initialize] aligning overlaps [====================] 0.458094 s [racon::Polisher::initialize] transformed data into windows 0.000378 s [racon::Polisher::polish] generating consensus [=> ] 0.079158 s [racon::Polisher::polish] generating consensus [==> ] 0.189493 s [racon::Polisher::polish] generating consensus [===> ] 0.265461 s [racon::Polisher::polish] generating consensus [====> ] 0.327401 s [racon::Polisher::polish] generating consensus [=====> ] 0.366258 s [racon::Polisher::polish] generating consensus [======> ] 0.400327 s [racon::Polisher::polish] generating consensus [=======> ] 0.440489 s [racon::Polisher::polish] generating consensus [========> ] 0.477705 s [racon::Polisher::polish] generating consensus [=========> ] 0.510242 s [racon::Polisher::polish] generating consensus [==========> ] 0.621009 s [racon::Polisher::polish] generating consensus [===========> ] 0.773467 s [racon::Polisher::polish] generating consensus [============> ] 0.884226 s [racon::Polisher::polish] generating consensus [=============> ] 1.069501 s [racon::Polisher::polish] generating consensus [==============> ] 1.184608 s [racon::Polisher::polish] generating consensus [===============> ] 1.281713 s [racon::Polisher::polish] generating consensus [================> ] 1.373315 s [racon::Polisher::polish] generating consensus [=================> ] 1.460222 s [racon::Polisher::polish] generating consensus [==================> ] 1.513132 s [racon::Polisher::polish] generating consensus [===================>] 1.593046 s [racon::Polisher::polish] generating consensus [====================] 1.881167 s [racon::Polisher::] total = 2.387441 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (2397 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000589 s [racon::Polisher::initialize] loaded sequences 0.069178 s [racon::Polisher::initialize] loaded overlaps 0.040046 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.019821 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.020078 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.020327 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.020534 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.020731 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.020925 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.021428 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.021635 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.021830 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.022025 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.022221 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.022412 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.022607 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.022801 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.022997 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.023195 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.023390 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.023602 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.023801 s [racon::Polisher::initialize] aligning overlaps [====================] 0.023999 s [racon::Polisher::initialize] transformed data into windows 0.001491 s [racon::Polisher::polish] generating consensus [=> ] 0.098077 s [racon::Polisher::polish] generating consensus [==> ] 0.174594 s [racon::Polisher::polish] generating consensus [===> ] 0.235639 s [racon::Polisher::polish] generating consensus [====> ] 0.293881 s [racon::Polisher::polish] generating consensus [=====> ] 0.331092 s [racon::Polisher::polish] generating consensus [======> ] 0.365698 s [racon::Polisher::polish] generating consensus [=======> ] 0.406409 s [racon::Polisher::polish] generating consensus [========> ] 0.454837 s [racon::Polisher::polish] generating consensus [=========> ] 0.502113 s [racon::Polisher::polish] generating consensus [==========> ] 0.575350 s [racon::Polisher::polish] generating consensus [===========> ] 0.676905 s [racon::Polisher::polish] generating consensus [============> ] 0.757699 s [racon::Polisher::polish] generating consensus [=============> ] 0.860435 s [racon::Polisher::polish] generating consensus [==============> ] 0.964537 s [racon::Polisher::polish] generating consensus [===============> ] 1.035637 s [racon::Polisher::polish] generating consensus [================> ] 1.086078 s [racon::Polisher::polish] generating consensus [=================> ] 1.124227 s [racon::Polisher::polish] generating consensus [==================> ] 1.155679 s [racon::Polisher::polish] generating consensus [===================>] 1.219521 s [racon::Polisher::polish] generating consensus [====================] 1.303243 s [racon::Polisher::] total = 1.461876 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (1478 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000370 s [racon::Polisher::initialize] loaded sequences 0.025599 s [racon::Polisher::initialize] loaded overlaps 0.041000 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.008027 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.008274 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.008509 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.008746 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.008978 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.009212 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.009447 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.009696 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.009912 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.010101 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.010281 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.010465 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.010652 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.010832 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.011018 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.011208 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.011392 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.011578 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.011788 s [racon::Polisher::initialize] aligning overlaps [====================] 0.011980 s [racon::Polisher::initialize] transformed data into windows 0.000379 s [racon::Polisher::polish] generating consensus [=> ] 0.107453 s [racon::Polisher::polish] generating consensus [==> ] 0.203794 s [racon::Polisher::polish] generating consensus [===> ] 0.265438 s [racon::Polisher::polish] generating consensus [====> ] 0.329242 s [racon::Polisher::polish] generating consensus [=====> ] 0.374179 s [racon::Polisher::polish] generating consensus [======> ] 0.418473 s [racon::Polisher::polish] generating consensus [=======> ] 0.465217 s [racon::Polisher::polish] generating consensus [========> ] 0.518142 s [racon::Polisher::polish] generating consensus [=========> ] 0.573731 s [racon::Polisher::polish] generating consensus [==========> ] 0.670546 s [racon::Polisher::polish] generating consensus [===========> ] 0.788390 s [racon::Polisher::polish] generating consensus [============> ] 0.933699 s [racon::Polisher::polish] generating consensus [=============> ] 1.205850 s [racon::Polisher::polish] generating consensus [==============> ] 1.372661 s [racon::Polisher::polish] generating consensus [===============> ] 1.513659 s [racon::Polisher::polish] generating consensus [================> ] 1.617716 s [racon::Polisher::polish] generating consensus [=================> ] 1.711188 s [racon::Polisher::polish] generating consensus [==================> ] 1.772431 s [racon::Polisher::polish] generating consensus [===================>] 1.829000 s [racon::Polisher::polish] generating consensus [====================] 2.050864 s [racon::Polisher::] total = 2.136792 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (2140 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.009031 s [racon::Polisher::initialize] loaded sequences 0.047148 s [racon::Polisher::initialize] loaded overlaps 0.000348 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.054127 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.083993 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.111648 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.146136 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.170569 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.177424 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.196260 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.230043 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.238874 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.260384 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.282366 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.311040 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.371526 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.371777 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.418643 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.439842 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.454225 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.477401 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.477479 s [racon::Polisher::initialize] aligning overlaps [====================] 0.482820 s [racon::Polisher::initialize] transformed data into windows 0.001307 s [racon::Polisher::polish] generating consensus [=> ] 0.312531 s [racon::Polisher::polish] generating consensus [==> ] 0.312777 s [racon::Polisher::polish] generating consensus [===> ] 0.615343 s [racon::Polisher::polish] generating consensus [====> ] 0.615607 s [racon::Polisher::polish] generating consensus [=====> ] 0.803713 s [racon::Polisher::polish] generating consensus [======> ] 0.807524 s [racon::Polisher::polish] generating consensus [=======> ] 0.924477 s [racon::Polisher::polish] generating consensus [========> ] 0.924747 s [racon::Polisher::polish] generating consensus [=========> ] 1.098952 s [racon::Polisher::polish] generating consensus [==========> ] 1.099417 s [racon::Polisher::polish] generating consensus [===========> ] 1.439998 s [racon::Polisher::polish] generating consensus [============> ] 1.440016 s [racon::Polisher::polish] generating consensus [=============> ] 2.021288 s [racon::Polisher::polish] generating consensus [==============> ] 2.036186 s [racon::Polisher::polish] generating consensus [===============> ] 2.375252 s [racon::Polisher::polish] generating consensus [================> ] 2.423363 s [racon::Polisher::polish] generating consensus [=================> ] 2.685843 s [racon::Polisher::polish] generating consensus [==================> ] 2.715348 s [racon::Polisher::polish] generating consensus [===================>] 2.930701 s [racon::Polisher::polish] generating consensus [====================] 3.608900 s [racon::Polisher::] total = 4.158741 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (4191 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000552 s [racon::Polisher::initialize] loaded sequences 0.073877 s [racon::Polisher::initialize] loaded overlaps 0.000347 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.046444 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.071648 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.104230 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.129660 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.150227 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.167332 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.220338 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.242715 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.267725 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.282907 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.310483 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.326930 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.374437 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.385520 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.414980 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.441287 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.475540 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.498540 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.498554 s [racon::Polisher::initialize] aligning overlaps [====================] 0.507448 s [racon::Polisher::initialize] transformed data into windows 0.001444 s [racon::Polisher::polish] generating consensus [=> ] 0.077641 s [racon::Polisher::polish] generating consensus [==> ] 0.178881 s [racon::Polisher::polish] generating consensus [===> ] 0.256853 s [racon::Polisher::polish] generating consensus [====> ] 0.322498 s [racon::Polisher::polish] generating consensus [=====> ] 0.356446 s [racon::Polisher::polish] generating consensus [======> ] 0.390495 s [racon::Polisher::polish] generating consensus [=======> ] 0.438946 s [racon::Polisher::polish] generating consensus [========> ] 0.493509 s [racon::Polisher::polish] generating consensus [=========> ] 0.566497 s [racon::Polisher::polish] generating consensus [==========> ] 0.667709 s [racon::Polisher::polish] generating consensus [===========> ] 0.787001 s [racon::Polisher::polish] generating consensus [============> ] 0.878521 s [racon::Polisher::polish] generating consensus [=============> ] 1.028889 s [racon::Polisher::polish] generating consensus [==============> ] 1.210495 s [racon::Polisher::polish] generating consensus [===============> ] 1.319084 s [racon::Polisher::polish] generating consensus [================> ] 1.400979 s [racon::Polisher::polish] generating consensus [=================> ] 1.520687 s [racon::Polisher::polish] generating consensus [==================> ] 1.589241 s [racon::Polisher::polish] generating consensus [===================>] 1.657197 s [racon::Polisher::polish] generating consensus [====================] 2.005548 s [racon::Polisher::] total = 2.610548 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (2615 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.071316 s [racon::Polisher::initialize] loaded sequences 0.071876 s [racon::Polisher::initialize] loaded overlaps 0.019872 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.059978 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.102235 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.114919 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.138767 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.156317 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.188512 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.198363 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.211151 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.227415 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.255853 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.291748 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.322518 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.353128 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.389194 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.410083 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.446805 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.472621 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.492217 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.508869 s [racon::Polisher::initialize] aligning overlaps [====================] 0.539740 s [racon::Polisher::initialize] transformed data into windows 0.002688 s [racon::Polisher::polish] generating consensus [=> ] 0.062082 s [racon::Polisher::polish] generating consensus [==> ] 0.125883 s [racon::Polisher::polish] generating consensus [===> ] 0.190542 s [racon::Polisher::polish] generating consensus [====> ] 0.197332 s [racon::Polisher::polish] generating consensus [=====> ] 0.237703 s [racon::Polisher::polish] generating consensus [======> ] 0.265430 s [racon::Polisher::polish] generating consensus [=======> ] 0.300977 s [racon::Polisher::polish] generating consensus [========> ] 0.301270 s [racon::Polisher::polish] generating consensus [=========> ] 0.377283 s [racon::Polisher::polish] generating consensus [==========> ] 0.405671 s [racon::Polisher::polish] generating consensus [===========> ] 0.427655 s [racon::Polisher::polish] generating consensus [============> ] 0.437360 s [racon::Polisher::polish] generating consensus [=============> ] 0.463086 s [racon::Polisher::polish] generating consensus [==============> ] 0.469499 s [racon::Polisher::polish] generating consensus [===============> ] 0.569870 s [racon::Polisher::polish] generating consensus [================> ] 0.570198 s [racon::Polisher::polish] generating consensus [=================> ] 0.699263 s [racon::Polisher::polish] generating consensus [==================> ] 0.748674 s [racon::Polisher::polish] generating consensus [===================>] 0.787939 s [racon::Polisher::polish] generating consensus [====================] 0.806753 s [racon::Polisher::] total = 1.513237 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (1514 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.047259 s [racon::Polisher::initialize] loaded sequences 0.053560 s [racon::Polisher::initialize] loaded overlaps 0.011641 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.724169 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.241333 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.659940 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.255934 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.712616 s [racon::Polisher::initialize] aligning overlaps [======> ] 3.152588 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.674408 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.332955 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.992604 s [racon::Polisher::initialize] aligning overlaps [==========> ] 5.364123 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.712467 s [racon::Polisher::initialize] aligning overlaps [============> ] 6.129962 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.590205 s [racon::Polisher::initialize] aligning overlaps [==============> ] 7.024664 s [racon::Polisher::initialize] aligning overlaps [===============> ] 7.417992 s [racon::Polisher::initialize] aligning overlaps [================> ] 7.882851 s [racon::Polisher::initialize] aligning overlaps [=================> ] 8.364280 s [racon::Polisher::initialize] aligning overlaps [==================> ] 8.826725 s [racon::Polisher::initialize] aligning overlaps [===================>] 9.236694 s [racon::Polisher::initialize] aligning overlaps [====================] 9.609618 s [racon::Polisher::initialize] transformed data into windows 0.081215 s [racon::Polisher::polish] generating consensus [=> ] 2.887731 s [racon::Polisher::polish] generating consensus [==> ] 5.020528 s [racon::Polisher::polish] generating consensus [===> ] 7.487695 s [racon::Polisher::polish] generating consensus [====> ] 10.187380 s [racon::Polisher::polish] generating consensus [=====> ] 12.916643 s [racon::Polisher::polish] generating consensus [======> ] 15.759441 s [racon::Polisher::polish] generating consensus [=======> ] 18.336733 s [racon::Polisher::polish] generating consensus [========> ] 20.084019 s [racon::Polisher::polish] generating consensus [=========> ] 22.327174 s [racon::Polisher::polish] generating consensus [==========> ] 24.768470 s [racon::Polisher::polish] generating consensus [===========> ] 26.330307 s [racon::Polisher::polish] generating consensus [============> ] 28.210290 s [racon::Polisher::polish] generating consensus [=============> ] 30.166727 s [racon::Polisher::polish] generating consensus [==============> ] 32.424519 s [racon::Polisher::polish] generating consensus [===============> ] 35.024265 s [racon::Polisher::polish] generating consensus [================> ] 36.296064 s [racon::Polisher::polish] generating consensus [=================> ] 38.873129 s [racon::Polisher::polish] generating consensus [==================> ] 41.289665 s [racon::Polisher::polish] generating consensus [===================>] 42.386335 s [racon::Polisher::polish] generating consensus [====================] 42.742963 s [racon::Polisher::] total = 52.549700 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (52557 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.020729 s [racon::Polisher::initialize] loaded sequences 0.026358 s [racon::Polisher::initialize] loaded overlaps 0.011882 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.586697 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.978867 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.262139 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.741789 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.159663 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.440534 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.801503 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.296766 s [racon::Polisher::initialize] aligning overlaps [=========> ] 3.678424 s [racon::Polisher::initialize] aligning overlaps [==========> ] 4.048790 s [racon::Polisher::initialize] aligning overlaps [===========> ] 4.344074 s [racon::Polisher::initialize] aligning overlaps [============> ] 4.769398 s [racon::Polisher::initialize] aligning overlaps [=============> ] 5.201976 s [racon::Polisher::initialize] aligning overlaps [==============> ] 5.550567 s [racon::Polisher::initialize] aligning overlaps [===============> ] 6.047292 s [racon::Polisher::initialize] aligning overlaps [================> ] 6.494756 s [racon::Polisher::initialize] aligning overlaps [=================> ] 6.848044 s [racon::Polisher::initialize] aligning overlaps [==================> ] 7.034630 s [racon::Polisher::initialize] aligning overlaps [===================>] 7.442682 s [racon::Polisher::initialize] aligning overlaps [====================] 7.556649 s [racon::Polisher::initialize] transformed data into windows 0.010001 s [racon::Polisher::polish] generating consensus [=> ] 2.121187 s [racon::Polisher::polish] generating consensus [==> ] 2.927195 s [racon::Polisher::polish] generating consensus [===> ] 3.945267 s [racon::Polisher::polish] generating consensus [====> ] 4.689575 s [racon::Polisher::polish] generating consensus [=====> ] 6.282638 s [racon::Polisher::polish] generating consensus [======> ] 8.591430 s [racon::Polisher::polish] generating consensus [=======> ] 10.260511 s [racon::Polisher::polish] generating consensus [========> ] 11.881121 s [racon::Polisher::polish] generating consensus [=========> ] 13.229769 s [racon::Polisher::polish] generating consensus [==========> ] 15.825036 s [racon::Polisher::polish] generating consensus [===========> ] 17.736763 s [racon::Polisher::polish] generating consensus [============> ] 19.931725 s [racon::Polisher::polish] generating consensus [=============> ] 22.049195 s [racon::Polisher::polish] generating consensus [==============> ] 24.251153 s [racon::Polisher::polish] generating consensus [===============> ] 26.068946 s [racon::Polisher::polish] generating consensus [================> ] 27.271966 s [racon::Polisher::polish] generating consensus [=================> ] 30.658967 s [racon::Polisher::polish] generating consensus [==================> ] 32.272109 s [racon::Polisher::polish] generating consensus [===================>] 33.979038 s [racon::Polisher::polish] generating consensus [====================] 34.994134 s [racon::Polisher::] total = 42.622408 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (42627 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.064427 s [racon::Polisher::initialize] loaded sequences 0.078828 s [racon::Polisher::initialize] loaded overlaps 0.015747 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.994702 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.605902 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.075275 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.838890 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.547912 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.021633 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.649043 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.305522 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.033894 s [racon::Polisher::initialize] aligning overlaps [==========> ] 6.821222 s [racon::Polisher::initialize] aligning overlaps [===========> ] 7.409330 s [racon::Polisher::initialize] aligning overlaps [============> ] 8.190546 s [racon::Polisher::initialize] aligning overlaps [=============> ] 9.072750 s [racon::Polisher::initialize] aligning overlaps [==============> ] 9.860088 s [racon::Polisher::initialize] aligning overlaps [===============> ] 10.665490 s [racon::Polisher::initialize] aligning overlaps [================> ] 11.619956 s [racon::Polisher::initialize] aligning overlaps [=================> ] 12.426321 s [racon::Polisher::initialize] aligning overlaps [==================> ] 13.136380 s [racon::Polisher::initialize] aligning overlaps [===================>] 13.450998 s [racon::Polisher::initialize] aligning overlaps [====================] 13.649755 s [racon::Polisher::initialize] transformed data into windows 0.120964 s [racon::Polisher::polish] generating consensus [=> ] 3.795471 s [racon::Polisher::polish] generating consensus [==> ] 5.259944 s [racon::Polisher::polish] generating consensus [===> ] 8.735725 s [racon::Polisher::polish] generating consensus [====> ] 11.024408 s [racon::Polisher::polish] generating consensus [=====> ] 13.194972 s [racon::Polisher::polish] generating consensus [======> ] 17.046586 s [racon::Polisher::polish] generating consensus [=======> ] 19.977640 s [racon::Polisher::polish] generating consensus [========> ] 21.467843 s [racon::Polisher::polish] generating consensus [=========> ] 23.714490 s [racon::Polisher::polish] generating consensus [==========> ] 27.641093 s [racon::Polisher::polish] generating consensus [===========> ] 30.321648 s [racon::Polisher::polish] generating consensus [============> ] 31.304228 s [racon::Polisher::polish] generating consensus [=============> ] 33.307508 s [racon::Polisher::polish] generating consensus [==============> ] 34.135111 s [racon::Polisher::polish] generating consensus [===============> ] 35.379729 s [racon::Polisher::polish] generating consensus [================> ] 37.414723 s [racon::Polisher::polish] generating consensus [=================> ] 39.169512 s [racon::Polisher::polish] generating consensus [==================> ] 40.335152 s [racon::Polisher::polish] generating consensus [===================>] 43.105721 s [racon::Polisher::polish] generating consensus [====================] 44.282111 s [racon::Polisher::] total = 58.214656 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (58235 ms) [----------] 10 tests from RaconPolishingTest (170061 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (170085 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-4_arm64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-4_arm64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3074383 and its subdirectories I: Current time: Sun Oct 12 18:02:07 -12 2025 I: pbuilder-time-stamp: 1760335327 Mon Oct 13 06:02:09 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Mon Oct 13 06:02:09 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Mon Oct 13 06:04:10 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Mon Oct 13 06:04:11 UTC 2025 I: racon_1.5.0-4_arm64.changes: Format: 1.8 Date: Thu, 09 Oct 2025 21:53:44 +0200 Source: racon Binary: racon racon-dbgsym Architecture: arm64 Version: 1.5.0-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: racon - consensus module for raw de novo DNA assembly of long uncorrected Closes: 1097767 Changes: racon (1.5.0-4) unstable; urgency=medium . [ Adrian Bunk ] * Fix FTBFS with GCC 15. (Closes: #1097767) . [ Andreas Tille ] * d/watch: version = 5 * Standards-Version: 4.7.2 (routine-update) * debputy lint --auto-fix (routine-update) Checksums-Sha1: 8ac0989c76ac5d3c1d89723dd3e7d7eef6005101 1015896 racon-dbgsym_1.5.0-4_arm64.deb a179583d3ccd23e727b4590539aff62ee8819b96 6250 racon_1.5.0-4_arm64.buildinfo a8da05fea811c6a55819c0389f8ff4c60f8995b8 3110200 racon_1.5.0-4_arm64.deb Checksums-Sha256: 17f58a96ae2cdaf5734f0853eee68773e99e4756a4db58a0cf6058b18d09e6f6 1015896 racon-dbgsym_1.5.0-4_arm64.deb 6596b14e925cf746beab25ab5eff60fd1e0f9e127e095905cf81fe9839ac96fe 6250 racon_1.5.0-4_arm64.buildinfo aeb7eac615ac953d7fc4e4c22ea53e9718888ea05f14f9a6019e74dae6973c07 3110200 racon_1.5.0-4_arm64.deb Files: 844e9e2195a262bf024334fca8099a70 1015896 debug optional racon-dbgsym_1.5.0-4_arm64.deb f693cec38f8deaa93dfc5ceefd2129c4 6250 science optional racon_1.5.0-4_arm64.buildinfo 9aab52dde81f299c9c5b5737059d6ff9 3110200 science optional racon_1.5.0-4_arm64.deb Mon Oct 13 06:04:11 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_9-103035.service; invocation ID: bc4260341c10410aad864051179046ae # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.wxEiRMfB/racon_1.5.0-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.wxEiRMfB/racon_1.5.0-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.wxEiRMfB/racon_1.5.0-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.wxEiRMfB/b1/racon_1.5.0-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.wxEiRMfB/b2/racon_1.5.0-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 209ms CPU time consumed: 174ms Memory peak: 17.6M (swap: 0B) Mon Oct 13 06:04:12 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Mon Oct 13 06:04:12 UTC 2025 I: racon from forky built successfully and reproducibly on arm64. Mon Oct 13 06:04:13 UTC 2025 I: Removing signed racon_1.5.0-4_arm64.buildinfo.asc files: removed './b1/racon_1.5.0-4_arm64.buildinfo.asc' removed './b2/racon_1.5.0-4_arm64.buildinfo.asc'