Tue Sep 9 12:00:14 UTC 2025 I: starting to build schroedinger-coordgenlibs/forky/arm64 on jenkins on '2025-09-09 11:59' Tue Sep 9 12:00:14 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/96133/console.log Tue Sep 9 12:00:14 UTC 2025 I: Downloading source for forky/schroedinger-coordgenlibs=3.0.2-2 --2025-09-09 12:00:14-- http://deb.debian.org/debian/pool/main/s/schroedinger-coordgenlibs/schroedinger-coordgenlibs_3.0.2-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2301 (2.2K) [text/prs.lines.tag] Saving to: ‘schroedinger-coordgenlibs_3.0.2-2.dsc’ 0K .. 100% 285M=0s 2025-09-09 12:00:14 (285 MB/s) - ‘schroedinger-coordgenlibs_3.0.2-2.dsc’ saved [2301/2301] Tue Sep 9 12:00:14 UTC 2025 I: schroedinger-coordgenlibs_3.0.2-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: schroedinger-coordgenlibs Binary: libcoordgen-dev, libcoordgen3 Architecture: any Version: 3.0.2-2 Maintainer: Debian Science Team Uploaders: Steffen Moeller , Homepage: https://github.com/schrodinger/coordgenlibs Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/science-team/schroedinger-coordgenlibs Vcs-Git: https://salsa.debian.org/science-team/schroedinger-coordgenlibs.git Build-Depends: cmake, debhelper-compat (= 13), libboost-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-test-dev, libmaeparser-dev, zlib1g-dev Package-List: libcoordgen-dev deb libdevel optional arch=any libcoordgen3 deb libs optional arch=any Checksums-Sha1: da681ab56f1dace088d90a538a27eb649e44f286 166817 schroedinger-coordgenlibs_3.0.2.orig.tar.gz a46806228ebafdafb714b9179b1ae6e68510849a 3596 schroedinger-coordgenlibs_3.0.2-2.debian.tar.xz Checksums-Sha256: f67697434f7fec03bca150a6d84ea0e8409f6ec49d5aab43badc5833098ff4e3 166817 schroedinger-coordgenlibs_3.0.2.orig.tar.gz 593052d3a999594f02717f607ae8deb6a0923b098b8f49630facf3ccb7bd07e6 3596 schroedinger-coordgenlibs_3.0.2-2.debian.tar.xz Files: bc9dabbbb2b99ae426f3a1bf16c4d3cc 166817 schroedinger-coordgenlibs_3.0.2.orig.tar.gz 92dd7eef7f7298bf33dbf563d16c5eb7 3596 schroedinger-coordgenlibs_3.0.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmi1UT0SHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKH1jEP/2jGTn64uV+Hdz03MkS4S3CN9KAhIQXY h96PAuWdODokMuJ3uvmaqF45aTIJjyBKzVY5V/gf8DadejhzZb1LFOCwqYTTMNgR HLG9ZLG104AI2Yc4nmxUV+rEjaXFqQQ6EIymapN6cQsfMB80LEYCzoUQvJ+AlRRw YwqrdhLDdjxMuq3ZEQd2PUFFiMjVT3+PZ6BA7vFit+8ZGjfOmkK0DUxQBxaEtQ2j BMdkhrWRfyvgTZ6EUrJ4o5X11AgX6YszdDOV5qATyTTUDCijp2+uowC+msOQDTJ4 HTFTWyvzzMHBc4EN4u4+CF9SkD69dfCbK8yd2QYBhuvlaI4w4XKRbHEabTDsYqaE acdFURpery60ZuOB9rxWIi5ga8utYjMmSp0qx04kro7GZqKZoNrkn+2d9JQCUi4A 6KIyhJ9lZMReO8OmmJnBaq/PiNsYaa8h8U+muO/RKSvOCfVIUZCdRJqJq388+9b4 WqD6ieT+5DdJZ8zJgLjzbF0iQC6Yj7uGdJxn6HqkmEzRq3tsBqX8vnsDvj7+g+G0 SBaPObM+s+RmryGJQofZVBLSa9NS079e2S9c79yWDG4GIfBwk2rPXq5RdtLcgZ+d pch98zvz75zAG/U6y4G3fj41zDJG9VOyLsxZP5AW7hfCQrjF+2/VllwUhHHUI48g 2b3uPbxil4ci =ZN46 -----END PGP SIGNATURE----- Tue Sep 9 12:00:14 UTC 2025 I: Checking whether the package is not for us Tue Sep 9 12:00:14 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Tue Sep 9 12:00:14 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Tue Sep 9 12:01:20 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Sep 9 00:00:15 -12 2025 I: pbuilder-time-stamp: 1757419215 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [schroedinger-coordgenlibs_3.0.2-2.dsc] I: copying [./schroedinger-coordgenlibs_3.0.2.orig.tar.gz] I: copying [./schroedinger-coordgenlibs_3.0.2-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./schroedinger-coordgenlibs_3.0.2-2.dsc: no acceptable signature found dpkg-source: info: extracting schroedinger-coordgenlibs in schroedinger-coordgenlibs-3.0.2 dpkg-source: info: unpacking schroedinger-coordgenlibs_3.0.2.orig.tar.gz dpkg-source: info: unpacking schroedinger-coordgenlibs_3.0.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying bump-cmake_minimum_required.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3525792/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='9a444efc3855411cbec68bd5c17ab63e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3525792' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.00hTqqYQ/pbuilderrc_Ymnt --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.00hTqqYQ/b1 --logfile b1/build.log schroedinger-coordgenlibs_3.0.2-2.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3525792/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), libboost-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-test-dev, libmaeparser-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20012 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-test-dev; however: Package libboost-test-dev is not installed. pbuilder-satisfydepends-dummy depends on libmaeparser-dev; however: Package libmaeparser-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-test-dev{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu-dev{a} libicu76{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmaeparser-dev{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 64.1 MB of archives. After unpacking 398 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-2 [93.9 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 cmake-data all 4.1.1+really3.31.6-1 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 27 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.9-3 [1375 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.15.0-1 [360 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 cmake arm64 4.1.1+really3.31.6-1 [9905 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.14.2-1 [19.8 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.14.2-1 [8768 B] Get: 54 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 icu-devtools arm64 76.1-4 [200 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libboost1.83-dev arm64 1.83.0-4.2 [10.6 MB] Get: 63 http://deb.debian.org/debian forky/main arm64 libboost-atomic1.83.0 arm64 1.83.0-4.2 [234 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libboost-atomic1.83-dev arm64 1.83.0-4.2 [235 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 66 http://deb.debian.org/debian forky/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-4.2 [273 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libboost-system1.83.0 arm64 1.83.0-4.2 [231 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libboost-system1.83-dev arm64 1.83.0-4.2 [232 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-4.2 [292 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B] Get: 71 http://deb.debian.org/debian forky/main arm64 libboost-regex1.83.0 arm64 1.83.0-4.2 [314 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libicu-dev arm64 76.1-4 [10.6 MB] Get: 73 http://deb.debian.org/debian forky/main arm64 libboost-regex1.83-dev arm64 1.83.0-4.2 [335 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-4.2 [261 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 76 http://deb.debian.org/debian forky/main arm64 libboost-test1.83.0 arm64 1.83.0-4.2 [438 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libboost-test1.83-dev arm64 1.83.0-4.2 [528 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libboost-test-dev arm64 1.83.0.2+b2 [3620 B] Get: 79 http://deb.debian.org/debian forky/main arm64 libmaeparser1 arm64 1.3.3-1 [84.6 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libmaeparser-dev arm64 1.3.3-1 [13.3 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 64.1 MB in 0s (195 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20012 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libboost-regex1.83.0:arm64 (1.83.0-4.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libboost-system1.83.0:arm64 (1.83.0-4.2) ... Setting up libuv1t64:arm64 (1.51.0-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libboost-filesystem1.83.0:arm64 (1.83.0-4.2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libmaeparser1:arm64 (1.3.3-1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up libboost-atomic1.83.0:arm64 (1.83.0-4.2) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:arm64 (1.9.6-4) ... Setting up libproc2-0:arm64 (2:4.0.4-9) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libboost-test1.83.0:arm64 (1.83.0-4.2) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up libboost-atomic1.83-dev:arm64 (1.83.0-4.2) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.8.0-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up cmake-data (4.1.1+really3.31.6-1) ... Setting up librhash1:arm64 (1.4.6-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libicu76:arm64 (76.1-4) ... Setting up libboost-system1.83-dev:arm64 (1.83.0-4.2) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libarchive13t64:arm64 (3.7.4-4+b1) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up libmaeparser-dev:arm64 (1.3.3-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.2-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up libboost-test1.83-dev:arm64 (1.83.0-4.2) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libboost-filesystem1.83-dev:arm64 (1.83.0-4.2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libboost-test-dev:arm64 (1.83.0.2+b2) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up icu-devtools (76.1-4) ... Setting up dh-strip-nondeterminism (1.14.2-1) ... Setting up groff-base (1.23.0-9) ... Setting up libicu-dev:arm64 (76.1-4) ... Setting up libboost-filesystem-dev:arm64 (1.83.0.2+b2) ... Setting up libgnutls30t64:arm64 (3.8.9-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libboost-regex1.83-dev:arm64 (1.83.0-4.2) ... Setting up libcurl4t64:arm64 (8.15.0-1) ... Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-4.2) ... Setting up debhelper (13.26) ... Setting up libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Setting up cmake (4.1.1+really3.31.6-1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../schroedinger-coordgenlibs_3.0.2-2_source.changes dpkg-buildpackage: info: source package schroedinger-coordgenlibs dpkg-buildpackage: info: source version 3.0.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.3.0 -- The CXX compiler identification is GNU 14.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- maeparser include dir set as '/usr/include' -- maeparser libraries set as '/usr/lib/aarch64-linux-gnu/libmaeparser.so' -- Found compiled maeparser library at CMake Warning (dev) at CMakeLists.txt:78 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") CMake Warning (dev) at example_dir/CMakeLists.txt:13 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem CMake Warning (dev) at test/CMakeLists.txt:14 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem unit_test_framework -- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/schroedinger-coordgenlibs-3.0.2 -B/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make -f CMakeFiles/coordgen.dir/build.make CMakeFiles/coordgen.dir/depend make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/CMakeFiles/coordgen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make -f CMakeFiles/coordgen.dir/build.make CMakeFiles/coordgen.dir/build make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 4%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenFragmenter.cpp [ 9%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o [ 14%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o [ 19%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o [ 23%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -c 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CXX object test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o [ 85%] Building CXX object test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DSOURCE_DIR=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.2\" -DTEST_SAMPLES_PATH=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test\" -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -MF CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o.d -o CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test/test_coordgen.cpp cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -MF CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o.d -o CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test/test_smilesparser.cpp [ 90%] Linking CXX executable example cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir && /usr/bin/cmake -E cmake_link_script CMakeFiles/example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/example.dir/link.d CMakeFiles/example.dir/example.cpp.o -o example -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu ../libcoordgen.so.3.0.2 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 90%] Built target example [ 95%] Linking CXX executable test_smilesparser cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_smilesparser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_smilesparser.dir/link.d CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -o test_smilesparser -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu ../libcoordgen.so.3.0.2 /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 95%] Built target test_smilesparser [100%] Linking CXX executable test_coordgen cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_coordgen.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_coordgen.dir/link.d CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -o test_coordgen -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu ../libcoordgen.so.3.0.2 /usr/lib/aarch64-linux-gnu/libmaeparser.so /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [100%] Built target test_coordgen make[2]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' dh_auto_test cd obj-aarch64-linux-gnu && make -j12 test ARGS\+=--verbose ARGS\+=-j12 make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j12 UpdateCTestConfiguration from :/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: example 1: Test command: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir/example 1: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 1: Test timeout computed to be: 1500 test 2 Start 2: test_coordgen 2: Test command: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/test_coordgen 2: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 2: Test timeout computed to be: 1500 test 3 Start 3: test_smilesparser 3: Test command: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/test_coordgen 3: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 3: Test timeout computed to be: 1500 1: (-50, 0) (0, 0) 1/3 Test #1: example .......................... Passed 0.01 sec 3: Running 16 test cases... 3: 3: *** No errors detected 3:  2/3 Test #3: test_smilesparser ................ Passed 1.11 sec 2: Running 16 test cases... 2: 2: *** No errors detected 2:  3/3 Test #2: test_coordgen .................... Passed 1.32 sec 100% tests passed, 0 tests failed out of 3 Total Test time (real) = 1.33 sec make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/schroedinger-coordgenlibs-3.0.2 -B/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libcoordgen.so.3.0.2 -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libcoordgen.so.3 -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libcoordgen.so -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenConfig.hpp -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenFragmentBuilder.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenFragmenter.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenMacrocycleBuilder.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenMinimizer.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerAtom.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerBendInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerBond.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerClashInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerEZConstrainInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerFragment.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizer.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMarchingSquares.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMaths.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMolecule.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerResidue.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerResidueInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerRing.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerStretchInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/coordgen-config.cmake -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/coordgen-config-none.cmake make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libcoordgen3' in '../libcoordgen3_3.0.2-2_arm64.deb'. dpkg-deb: building package 'libcoordgen-dev' in '../libcoordgen-dev_3.0.2-2_arm64.deb'. dpkg-deb: building package 'libcoordgen3-dbgsym' in '../libcoordgen3-dbgsym_3.0.2-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../schroedinger-coordgenlibs_3.0.2-2_arm64.buildinfo dpkg-genchanges --build=binary -O../schroedinger-coordgenlibs_3.0.2-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3525792 and its subdirectories I: Current time: Tue Sep 9 00:01:19 -12 2025 I: pbuilder-time-stamp: 1757419279 Tue Sep 9 12:01:21 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Tue Sep 9 12:01:21 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Tue Sep 9 12:02:22 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Tue Sep 9 12:02:22 UTC 2025 I: schroedinger-coordgenlibs_3.0.2-2_arm64.changes: Format: 1.8 Date: Mon, 01 Sep 2025 03:54:11 -0400 Source: schroedinger-coordgenlibs Binary: libcoordgen-dev libcoordgen3 libcoordgen3-dbgsym Architecture: arm64 Version: 3.0.2-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Team Changed-By: Andrius Merkys Description: libcoordgen-dev - 2D coordinate generation for chemical compounds - header files libcoordgen3 - 2D coordinate generation for chemical compounds Closes: 1113486 Changes: schroedinger-coordgenlibs (3.0.2-2) unstable; urgency=medium . * Team upload. * Bump cmake_minimum_required (Closes: #1113486) Checksums-Sha1: 967a78b31c10777c078f33d6b66f3c7861aeb486 46648 libcoordgen-dev_3.0.2-2_arm64.deb 8a1178804ebf6b5e1ff7bec315f24b6a2fee9d68 3409032 libcoordgen3-dbgsym_3.0.2-2_arm64.deb 7642b2b3df6912129a0a09ff80720050db86c9c4 203804 libcoordgen3_3.0.2-2_arm64.deb 497e3a859ff7dff982f66f0480bfb6508332b99e 7080 schroedinger-coordgenlibs_3.0.2-2_arm64.buildinfo Checksums-Sha256: 9d87ac39ff447092f4546cb255c4495fd12d901792460246521da6b91cb35b4d 46648 libcoordgen-dev_3.0.2-2_arm64.deb 923d3f501f4389db8fb87c153355ae04c4507b46ca12eed405d211debd1204e5 3409032 libcoordgen3-dbgsym_3.0.2-2_arm64.deb bed31b2c36e70ddae023f666aadda67ccf696a893715d20e00ee5c79eb12c1d3 203804 libcoordgen3_3.0.2-2_arm64.deb 3f817a969dd6f387b13c4e7e52062b64cbec0160f0b1c42b33004e72ca6e25dc 7080 schroedinger-coordgenlibs_3.0.2-2_arm64.buildinfo Files: 3e9f3c8e63923dade4d52f6489688465 46648 libdevel optional libcoordgen-dev_3.0.2-2_arm64.deb c8c5e469e75d83f3cdd4858a5220d42e 3409032 debug optional libcoordgen3-dbgsym_3.0.2-2_arm64.deb 287c3f656f4287d102ab524388b348f0 203804 libs optional libcoordgen3_3.0.2-2_arm64.deb e96e05c70440e5863828b0d4a3521cfc 7080 libs optional schroedinger-coordgenlibs_3.0.2-2_arm64.buildinfo Tue Sep 9 12:02:23 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_10-96133.service; invocation ID: b6feeaa45b3444769fc9f88304d1354f # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.00hTqqYQ/schroedinger-coordgenlibs_3.0.2-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.00hTqqYQ/schroedinger-coordgenlibs_3.0.2-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.00hTqqYQ/schroedinger-coordgenlibs_3.0.2-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.00hTqqYQ/b1/schroedinger-coordgenlibs_3.0.2-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.00hTqqYQ/b2/schroedinger-coordgenlibs_3.0.2-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 235ms CPU time consumed: 191ms Memory peak: 17.2M (swap: 0B) Tue Sep 9 12:02:24 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Tue Sep 9 12:02:24 UTC 2025 I: schroedinger-coordgenlibs from forky built successfully and reproducibly on arm64. Tue Sep 9 12:02:24 UTC 2025 I: Removing signed schroedinger-coordgenlibs_3.0.2-2_arm64.buildinfo.asc files: removed './b1/schroedinger-coordgenlibs_3.0.2-2_arm64.buildinfo.asc' removed './b2/schroedinger-coordgenlibs_3.0.2-2_arm64.buildinfo.asc'