Wed Sep 24 20:36:18 UTC 2025 I: starting to build scythe/forky/arm64 on jenkins on '2025-09-24 20:36' Wed Sep 24 20:36:18 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/98482/console.log Wed Sep 24 20:36:18 UTC 2025 I: Downloading source for forky/scythe=0.994+git20141017.20d3cff-5 --2025-09-24 20:36:19-- http://deb.debian.org/debian/pool/main/s/scythe/scythe_0.994%2bgit20141017.20d3cff-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2118 (2.1K) [text/prs.lines.tag] Saving to: ‘scythe_0.994+git20141017.20d3cff-5.dsc’ 0K .. 100% 251M=0s 2025-09-24 20:36:19 (251 MB/s) - ‘scythe_0.994+git20141017.20d3cff-5.dsc’ saved [2118/2118] Wed Sep 24 20:36:19 UTC 2025 I: scythe_0.994+git20141017.20d3cff-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: scythe Binary: scythe Architecture: any Version: 0.994+git20141017.20d3cff-5 Maintainer: Debian Med Packaging Team Uploaders: Kevin Murray Homepage: https://github.com/vsbuffalo/scythe Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/scythe Vcs-Git: https://salsa.debian.org/med-team/scythe.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, discount , check Package-List: scythe deb science optional arch=any Checksums-Sha1: cd4c9135e947cfff0f9290be34ee516c77fabd1a 327436 scythe_0.994+git20141017.20d3cff.orig.tar.xz 0661136d9c086a981914e23cd5a3e64a4c03d2bb 6636 scythe_0.994+git20141017.20d3cff-5.debian.tar.xz Checksums-Sha256: 7af94d252296eedc9b4d6bea9133f11b25329001530f13b1cf7b517104f5e9d2 327436 scythe_0.994+git20141017.20d3cff.orig.tar.xz 2ca44b523196b913fc65646427ea6c8dcdff6853d44f42e7cd757ab96cc5f7e5 6636 scythe_0.994+git20141017.20d3cff-5.debian.tar.xz Files: da02cf814fe5e4b589d33de5a243d53c 327436 scythe_0.994+git20141017.20d3cff.orig.tar.xz 0a89976836bda33fc723210dc6ceb164 6636 scythe_0.994+git20141017.20d3cff-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEc0cUmcxg7Z7ugFlGxb1sjyKV1QIFAmZrjUYSHHBsZXNzeUBk ZWJpYW4ub3JnAAoJEMW9bI8ildUCDJwP/R8CiOrPpW/vY4bvFMbGLs0LqznPVFE0 6pSUj/IrDOUosXDEiUD6dMsqw/LxBWQqcejdhME36XvjbyibDMgGPniS0cSfX29G 3xulrzlxlmVbpde4FPDReKNm+oKVIr3DRvePtZ47zus99t0ESuyVCKk6pAjGHKu9 E9x4/irGV33q6oLCllXoFK7+Gp7CvqXLQw9M0kTeM27L5lJAc09oAXxf+fgievyw dbZaW0mh/s+l5T84aPXIyXk9alvDaOXKWegjnzbKrpYecVTebXwQblEBt+uyCV/1 +vf/njcKlipFsMTCcdoNCCIhxHMtm8dODk7WG79RYhhW89iOS0le4xEIVK/8tn8p UMTX7JoMu4FTVPAoa4/uoVElmdWLfxtX3dnbQTgZMQcnWitKmQgITDoQbph55Id/ JZLJTjj2FWG2JsTIfMeL9pRZqf2t0k4XTA6+PerS0lFxanGovjUYVhHfIAH/ktAm csnKE362TmpnyR0FbvNDZRYM6EtG0viw/cb041Wi8RAprursC0C7aa/05jLBxnZU r+Kf6+GNXzcuNeU9WoXLnm6L4vIu/uk17+gHEKUoc0EyqrpFTkjZzz1/EA5gt6tQ cXxYrKW/KxHcniFWloXlrKB5nvFQBbLs62n8pZ9fFlzujL1mjLzs98ylDbZQzClG lMlFfPkIrM9i =3ayg -----END PGP SIGNATURE----- Wed Sep 24 20:36:19 UTC 2025 I: Checking whether the package is not for us Wed Sep 24 20:36:19 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Wed Sep 24 20:36:19 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Wed Sep 24 20:36:59 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 24 08:36:20 -12 2025 I: pbuilder-time-stamp: 1758746180 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [scythe_0.994+git20141017.20d3cff-5.dsc] I: copying [./scythe_0.994+git20141017.20d3cff.orig.tar.xz] I: copying [./scythe_0.994+git20141017.20d3cff-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./scythe_0.994+git20141017.20d3cff-5.dsc: no acceptable signature found dpkg-source: info: extracting scythe in scythe-0.994+git20141017.20d3cff dpkg-source: info: unpacking scythe_0.994+git20141017.20d3cff.orig.tar.xz dpkg-source: info: unpacking scythe_0.994+git20141017.20d3cff-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Makefile-cleaning-for-debian.patch dpkg-source: info: applying 0002-Fix-typos-in-binary.patch dpkg-source: info: applying 0003-Get-package-version-from-dpkg-parsechangelog.patch dpkg-source: info: applying 0004-Include-CPPFLAGS-in-CFLAGS.patch dpkg-source: info: applying 0005-treat-VERSION-as-string.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3045608/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ad5a2eac197c452da7ebfd26e9528104' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3045608' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fWymZcn5/pbuilderrc_AfZW --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fWymZcn5/b1 --logfile b1/build.log scythe_0.994+git20141017.20d3cff-5.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3045608/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, discount, check dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on discount; however: Package discount is not installed. pbuilder-satisfydepends-dummy depends on check; however: Package check is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} check{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} discount{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libmarkdown2{a} libpipeline1{a} libsubunit-dev{a} libsubunit0{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 12.1 MB of archives. After unpacking 47.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libsubunit0 arm64 1.4.2-3+b1 [6520 B] Get: 17 http://deb.debian.org/debian forky/main arm64 libsubunit-dev arm64 1.4.2-3+b1 [7416 B] Get: 18 http://deb.debian.org/debian forky/main arm64 check arm64 0.15.2-3 [112 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 25 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libmarkdown2 arm64 2.2.7-2.1 [33.1 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 discount arm64 2.2.7-2.1 [24.5 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 12.1 MB in 0s (62.9 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-3_arm64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libsubunit0:arm64. Preparing to unpack .../15-libsubunit0_1.4.2-3+b1_arm64.deb ... Unpacking libsubunit0:arm64 (1.4.2-3+b1) ... Selecting previously unselected package libsubunit-dev:arm64. Preparing to unpack .../16-libsubunit-dev_1.4.2-3+b1_arm64.deb ... Unpacking libsubunit-dev:arm64 (1.4.2-3+b1) ... Selecting previously unselected package check:arm64. Preparing to unpack .../17-check_0.15.2-3_arm64.deb ... Unpacking check:arm64 (0.15.2-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../24-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../26-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../27-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package libmarkdown2:arm64. Preparing to unpack .../32-libmarkdown2_2.2.7-2.1_arm64.deb ... Unpacking libmarkdown2:arm64 (2.2.7-2.1) ... Selecting previously unselected package discount. Preparing to unpack .../33-discount_2.2.7-2.1_arm64.deb ... Unpacking discount (2.2.7-2.1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../34-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libsubunit0:arm64 (1.4.2-3+b1) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up libmarkdown2:arm64 (2.2.7-2.1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up libsubunit-dev:arm64 (1.4.2-3+b1) ... Setting up discount (2.2.7-2.1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up check:arm64 (0.15.2-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/scythe-0.994+git20141017.20d3cff/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../scythe_0.994+git20141017.20d3cff-5_source.changes dpkg-buildpackage: info: source package scythe dpkg-buildpackage: info: source version 0.994+git20141017.20d3cff-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Charles Plessy dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 distclean make[1]: Entering directory '/build/reproducible-path/scythe-0.994+git20141017.20d3cff' rm -rf *.o ./scythe ./test-scythe ./libscythe.so *.dSYM rm -rf *.tar.gz make[1]: Leaving directory '/build/reproducible-path/scythe-0.994+git20141017.20d3cff' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/scythe-0.994+git20141017.20d3cff' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scythe-0.994+git20141017.20d3cff=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -DVERSION='"0.994+git20141017.20d3cff-5"' -std=gnu99 -fPIC -c src/match.c -o match.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scythe-0.994+git20141017.20d3cff=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -DVERSION='"0.994+git20141017.20d3cff-5"' -std=gnu99 -fPIC -c src/util.c -o util.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scythe-0.994+git20141017.20d3cff=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -DVERSION='"0.994+git20141017.20d3cff-5"' -std=gnu99 -fPIC -c src/prob.c -o prob.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scythe-0.994+git20141017.20d3cff=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -DVERSION='"0.994+git20141017.20d3cff-5"' -std=gnu99 -fPIC -c src/scythe.c -o scythe.o src/scythe.c: In function 'main': src/scythe.c:135:37: warning: statement will never be executed [-Wswitch-unreachable] 135 | if (long_options[option_index].flag != 0) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scythe-0.994+git20141017.20d3cff=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -DVERSION='"0.994+git20141017.20d3cff-5"' -std=gnu99 -fPIC -c src/tests/tests.c -o tests.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scythe-0.994+git20141017.20d3cff=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -DVERSION='"0.994+git20141017.20d3cff-5"' -std=gnu99 -fPIC match.o util.o prob.o tests.o -o test-scythe -Wl,-z,relro -Wl,-z,now -lz -lm -lcheck cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scythe-0.994+git20141017.20d3cff=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -DVERSION='"0.994+git20141017.20d3cff-5"' -std=gnu99 -fPIC -shared -o libscythe.so match.o util.o prob.o -Wl,-z,relro -Wl,-z,now -lz -lm /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/scythe-0.994+git20141017.20d3cff=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -pedantic -DVERSION='"0.994+git20141017.20d3cff-5"' -std=gnu99 -fPIC match.o util.o prob.o scythe.o -o scythe -Wl,-z,relro -Wl,-z,now -lz -lm make[1]: Leaving directory '/build/reproducible-path/scythe-0.994+git20141017.20d3cff' debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/scythe-0.994+git20141017.20d3cff' markdown README.md > README.html make[1]: Leaving directory '/build/reproducible-path/scythe-0.994+git20141017.20d3cff' dh_auto_test make -j12 test make[1]: Entering directory '/build/reproducible-path/scythe-0.994+git20141017.20d3cff' ./test-scythe PASSED TEST 'score_sequence' PASSED TEST 'sum of score_sequence' tests: 2 passed: 2 failed: 0 make[1]: Leaving directory '/build/reproducible-path/scythe-0.994+git20141017.20d3cff' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/scythe/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'scythe' in '../scythe_0.994+git20141017.20d3cff-5_arm64.deb'. dpkg-deb: building package 'scythe-dbgsym' in '../scythe-dbgsym_0.994+git20141017.20d3cff-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../scythe_0.994+git20141017.20d3cff-5_arm64.buildinfo dpkg-genchanges --build=binary -O../scythe_0.994+git20141017.20d3cff-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3045608 and its subdirectories I: Current time: Wed Sep 24 08:36:58 -12 2025 I: pbuilder-time-stamp: 1758746218 Wed Sep 24 20:36:59 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Wed Sep 24 20:36:59 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Wed Sep 24 20:37:37 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Wed Sep 24 20:37:38 UTC 2025 I: scythe_0.994+git20141017.20d3cff-5_arm64.changes: Format: 1.8 Date: Fri, 14 Jun 2024 08:54:07 +0900 Source: scythe Binary: scythe scythe-dbgsym Architecture: arm64 Version: 0.994+git20141017.20d3cff-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Charles Plessy Description: scythe - Bayesian adaptor trimmer for sequencing reads Closes: 1073103 Changes: scythe (0.994+git20141017.20d3cff-5) unstable; urgency=medium . * Team upload. * Build-depend on discount instead of makdown (Closes: #1073103) * Set upstream metadata fields: Bug-Submit. Checksums-Sha1: 4e38c365a16cce82af31701e8974dbfc94c1df08 25488 scythe-dbgsym_0.994+git20141017.20d3cff-5_arm64.deb 0560996d221585d979c8f8e69c70b6fa9a926013 5145 scythe_0.994+git20141017.20d3cff-5_arm64.buildinfo 26c3aef4bfc839153a2992f26b58e52b6f8f89dc 18084 scythe_0.994+git20141017.20d3cff-5_arm64.deb Checksums-Sha256: f7d2014e38bcd3a4cd82ef9414086570f5defc428f33399008eef609f7b377be 25488 scythe-dbgsym_0.994+git20141017.20d3cff-5_arm64.deb f44f65752a48ce6d43ab3d19431dfbb709817e8b087249d2de601ddabfa8bfe4 5145 scythe_0.994+git20141017.20d3cff-5_arm64.buildinfo 0d46d03f9806326b899ad18e32d37c312d778eb206e065212bcb18173162521e 18084 scythe_0.994+git20141017.20d3cff-5_arm64.deb Files: c448b1c952e3717ce1e7d5c6d856d65a 25488 debug optional scythe-dbgsym_0.994+git20141017.20d3cff-5_arm64.deb 54bf0377d8dca886d90fceaf621060e9 5145 science optional scythe_0.994+git20141017.20d3cff-5_arm64.buildinfo acc60e508c6dea52de73e209c571dd87 18084 science optional scythe_0.994+git20141017.20d3cff-5_arm64.deb Wed Sep 24 20:37:38 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_10-98482.service; invocation ID: ca6429a15c33444d8db389fcf6448a43 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.fWymZcn5/scythe_0.994+git20141017.20d3cff-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.fWymZcn5/scythe_0.994+git20141017.20d3cff-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.fWymZcn5/scythe_0.994+git20141017.20d3cff-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.fWymZcn5/b1/scythe_0.994+git20141017.20d3cff-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.fWymZcn5/b2/scythe_0.994+git20141017.20d3cff-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 223ms CPU time consumed: 174ms Memory peak: 17M (swap: 0B) Wed Sep 24 20:37:39 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Wed Sep 24 20:37:39 UTC 2025 I: scythe from forky built successfully and reproducibly on arm64. Wed Sep 24 20:37:39 UTC 2025 I: Removing signed scythe_0.994+git20141017.20d3cff-5_arm64.buildinfo.asc files: removed './b1/scythe_0.994+git20141017.20d3cff-5_arm64.buildinfo.asc' removed './b2/scythe_0.994+git20141017.20d3cff-5_arm64.buildinfo.asc'