Mon Oct 20 07:09:37 UTC 2025 I: starting to build unifrac/forky/arm64 on jenkins on '2025-10-20 07:09' Mon Oct 20 07:09:37 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/100961/console.log Mon Oct 20 07:09:37 UTC 2025 I: Downloading source for forky/unifrac=1.3-4 --2025-10-20 07:09:37-- http://deb.debian.org/debian/pool/main/u/unifrac/unifrac_1.3-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2198 (2.1K) [text/prs.lines.tag] Saving to: ‘unifrac_1.3-4.dsc’ 0K .. 100% 262M=0s 2025-10-20 07:09:37 (262 MB/s) - ‘unifrac_1.3-4.dsc’ saved [2198/2198] Mon Oct 20 07:09:37 UTC 2025 I: unifrac_1.3-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: unifrac Binary: python3-unifrac Architecture: any Version: 1.3-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/biocore/unifrac Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/unifrac Vcs-Git: https://salsa.debian.org/med-team/unifrac.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.6.1) , python3-iow , python3-pytest , libssu-dev (>= 1.4-2~) Package-List: python3-unifrac deb python optional arch=any Checksums-Sha1: ce9c8b95b5567503d21902912ac222f1e7f27b28 65918 unifrac_1.3.orig.tar.gz 27d85d7bcc7f832130aa08308e480a0183c90597 7788 unifrac_1.3-4.debian.tar.xz Checksums-Sha256: e8cc37c3d5aaa31494c218df8a336eae135049d6840023d057da4fda8c4a4377 65918 unifrac_1.3.orig.tar.gz c1d9af94472d48cb50abb4a674097c0f529c4e8e9f163272c01f207118a5e7a8 7788 unifrac_1.3-4.debian.tar.xz Files: 5b9f4c8ff4caf738771a7c467ce6e043 65918 unifrac_1.3.orig.tar.gz 24a5d87829d5112d8cb35d2fadff794e 7788 unifrac_1.3-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbdhUoACgkQPCZ2P2xn 5uI8ng/+PdDeFsgxxR6+mQ4v6lz3c0GRa9QiZ1MU/jXaQvnSQaeXfAesDVRy5C6g klCDBIa4Ta3uBnJwcjINyExwhbLJADYJl0Qk0HUolZOj8QE+Fzi3XcmVZRY7ZyVY xDIMyMlOZkL6MlXMH6O4QOmhjjtf41w35ZCaqgknBzAvrSJiyb5E5MMZ7C4f+ic8 9WDJKCCys4IN++7ZpKdvYsSvye3zHwIfbCmpv6+l/ZLn5R0CAVvoSFzlq9H/eU4N e9mWhh9Nkq9PPc0q+jvjNJlO7dB4RpE3ESFJEuSeQsLy1IJX3ENrHnrt30zld1fw /c4R9ydvZ0ykGN8lwKs6vEtdPlTAX0NQNt5d3Gld4BgXDtrqtQmfqyLEHQCsCDVV tT7vzoBWX69frKs3wanj8WpRkHLvPs90u33B/bWGwIAJVBHI4e2yVvk159Py9Tbl y71G0D75Wu3ECi8tJ97ye5EoDTNx/g/D78cQ/3YY/7XpwpaKKBC7OjBCFuxCYmF6 Y7pKMJs+dSbn/ckHiVbNIaYOZ3dDfGLZIPtzNiTo2ST1QfbmLbnKUEJS9fGagt56 Wg4/cdsaWes2ZuKNsGpfVBxxPkSdeyCMHEaQVUxa4F2h9pZYG4ObeCoMHJKgNKoZ AUSAwNJgI9sTTSSHIec0tO4o0KyOEiOYb1lQ2ZXSEOkN5/eYWE8= =0wsE -----END PGP SIGNATURE----- Mon Oct 20 07:09:37 UTC 2025 I: Checking whether the package is not for us Mon Oct 20 07:09:37 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Mon Oct 20 07:09:37 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Mon Oct 20 07:12:38 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 19 19:09:38 -12 2025 I: pbuilder-time-stamp: 1760944178 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [unifrac_1.3-4.dsc] I: copying [./unifrac_1.3.orig.tar.gz] I: copying [./unifrac_1.3-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-4.dsc: no acceptable signature found dpkg-source: info: extracting unifrac in unifrac-1.3 dpkg-source: info: unpacking unifrac_1.3.orig.tar.gz dpkg-source: info: unpacking unifrac_1.3-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-check-for-pkg-version.patch dpkg-source: info: applying no_conda_prefix.patch dpkg-source: info: applying relax_test_conditions.patch dpkg-source: info: applying numpy.patch dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying update_test_api_according_to_skbio.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1009136/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='cca79007b9b84dc9a7b65d89f5db3cdc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1009136' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1o2syMxf/pbuilderrc_hnw2 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1o2syMxf/b1 --logfile b1/build.log unifrac_1.3-4.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1009136/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.6.1), python3-iow, python3-pytest, libssu-dev (>= 1.4-2~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on hdf5-helpers; however: Package hdf5-helpers is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio (>= 0.6.1); however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-iow; however: Package python3-iow is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on libssu-dev (>= 1.4-2~); however: Package libssu-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-sphinxdoc{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack3{a} liblapacke{a} libldap-dev{a} libldap2{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-ossl-dev{a} libngtcp2-crypto-ossl0{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssu-dev{a} libssu0{a} libssw0{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtmglib3{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-biom-format{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-iow{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-patsy{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pytest{a} python3-pytz{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-skbio{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-bottleneck python3-bs4 python3-colorama python3-cvxopt python3-html5lib python3-jinja2 python3-joblib python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-pooch python3-tables python3-yaml wget 0 packages upgraded, 178 newly installed, 0 to remove and 0 not upgraded. Need to get 94.9 MB of archives. After unpacking 429 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.8-1 [858 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.8-1 [2062 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.8-1 [1899 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.8-1 [765 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1.2 [138 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-4 [371 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 python3-numpy arm64 1:2.2.4+ds-1.2 [3620 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 openssl arm64 3.5.4-1 [1457 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 ca-certificates all 20250419 [162 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-1 [94.3 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 46 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 dh-exec arm64 0.30+b1 [25.8 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 hdf5-helpers arm64 1.14.5+repack-4 [26.7 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 60 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libaec0 arm64 1.1.4-2 [22.6 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libsz2 arm64 1.1.4-2 [8072 B] Get: 69 http://deb.debian.org/debian forky/main arm64 libaec-dev arm64 1.1.4-2 [20.3 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.16.0-4 [368 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 libnghttp3-dev arm64 1.12.0-1 [91.6 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl-dev arm64 1.16.0-1 [27.6 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 libngtcp2-dev arm64 1.16.0-1 [183 kB] Get: 97 http://deb.debian.org/debian forky/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 98 http://deb.debian.org/debian forky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get: 99 http://deb.debian.org/debian forky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get: 100 http://deb.debian.org/debian forky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 101 http://deb.debian.org/debian forky/main arm64 libunbound8 arm64 1.24.0-2 [559 kB] Get: 102 http://deb.debian.org/debian forky/main arm64 libgnutls-dane0t64 arm64 3.8.10-2 [456 kB] Get: 103 http://deb.debian.org/debian forky/main arm64 libgnutls-openssl27t64 arm64 3.8.10-2 [456 kB] Get: 104 http://deb.debian.org/debian forky/main arm64 libp11-kit-dev arm64 0.25.9-2 [220 kB] Get: 105 http://deb.debian.org/debian forky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 106 http://deb.debian.org/debian forky/main arm64 nettle-dev arm64 3.10.2-1 [1319 kB] Get: 107 http://deb.debian.org/debian forky/main arm64 libgnutls28-dev arm64 3.8.10-2 [1438 kB] Get: 108 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 109 http://deb.debian.org/debian forky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Get: 110 http://deb.debian.org/debian forky/main arm64 libssl-dev arm64 3.5.4-1 [3377 kB] Get: 111 http://deb.debian.org/debian forky/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 112 http://deb.debian.org/debian forky/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 113 http://deb.debian.org/debian forky/main arm64 libcurl4-openssl-dev arm64 8.16.0-4 [505 kB] Get: 114 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.3-1 [150 kB] Get: 115 http://deb.debian.org/debian forky/main arm64 libhdf5-310 arm64 1.14.5+repack-4 [1177 kB] Get: 116 http://deb.debian.org/debian forky/main arm64 libhdf5-cpp-310 arm64 1.14.5+repack-4 [129 kB] Get: 117 http://deb.debian.org/debian forky/main arm64 libhdf5-fortran-310 arm64 1.14.5+repack-4 [114 kB] Get: 118 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [68.4 kB] Get: 119 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-4 [44.5 kB] Get: 120 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-4 [24.9 kB] Get: 121 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 122 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Get: 123 http://deb.debian.org/debian forky/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Get: 124 http://deb.debian.org/debian forky/main arm64 libhdf5-dev arm64 1.14.5+repack-4 [3219 kB] Get: 125 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-7 [27.6 kB] Get: 126 http://deb.debian.org/debian forky/main arm64 libtmglib3 arm64 3.12.1-7 [103 kB] Get: 127 http://deb.debian.org/debian forky/main arm64 liblapacke arm64 3.12.1-7 [355 kB] Get: 128 http://deb.debian.org/debian forky/main arm64 liblzf1 arm64 3.6-4+b3 [10.1 kB] Get: 129 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.8-1 [2057 kB] Get: 130 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.8-1 [5020 kB] Get: 131 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 132 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.7-1 [1068 B] Get: 133 http://deb.debian.org/debian forky/main arm64 libssu0 arm64 1.4-3+b4 [136 kB] Get: 134 http://deb.debian.org/debian forky/main arm64 libssu-dev arm64 1.4-3+b4 [9876 B] Get: 135 http://deb.debian.org/debian forky/main arm64 libssw0 arm64 1.1-15+b2 [20.0 kB] Get: 136 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 137 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.8-1 [505 kB] Get: 138 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 139 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.7-1 [1068 B] Get: 140 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 141 http://deb.debian.org/debian forky/main arm64 python3-h5py-serial arm64 3.14.0-3 [972 kB] Get: 142 http://deb.debian.org/debian forky/main arm64 python3-h5py all 3.14.0-3 [18.3 kB] Get: 143 http://deb.debian.org/debian forky/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 144 http://deb.debian.org/debian forky/main arm64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 145 http://deb.debian.org/debian forky/main arm64 python3-pytz all 2025.2-4 [31.8 kB] Get: 146 http://deb.debian.org/debian forky/main arm64 python3-pandas-lib arm64 2.3.3+dfsg-1 [3653 kB] Get: 147 http://deb.debian.org/debian forky/main arm64 python3-pandas all 2.3.3+dfsg-1 [2934 kB] Get: 148 http://deb.debian.org/debian forky/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 149 http://deb.debian.org/debian forky/main arm64 python3-scipy arm64 1.15.3-1.1 [15.1 MB] Get: 150 http://deb.debian.org/debian forky/main arm64 python3-biom-format arm64 2.1.16-1+b5 [142 kB] Get: 151 http://deb.debian.org/debian forky/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 152 http://deb.debian.org/debian forky/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 153 http://deb.debian.org/debian forky/main arm64 python3-charset-normalizer arm64 3.4.3-1 [123 kB] Get: 154 http://deb.debian.org/debian forky/main arm64 python3-hdmedians arm64 0.14.2-6+b1 [107 kB] Get: 155 http://deb.debian.org/debian forky/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 156 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 157 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 158 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 159 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 160 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 161 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 162 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 163 http://deb.debian.org/debian forky/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 164 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.4.2-1 [266 kB] Get: 165 http://deb.debian.org/debian forky/main arm64 python3-natsort all 8.4.0-1 [38.9 kB] Get: 166 http://deb.debian.org/debian forky/main arm64 python3-patsy all 1.0.1-1 [172 kB] Get: 167 http://deb.debian.org/debian forky/main arm64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 168 http://deb.debian.org/debian forky/main arm64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get: 169 http://deb.debian.org/debian forky/main arm64 python3-statsmodels-lib arm64 0.14.5+dfsg-1 [1387 kB] Get: 170 http://deb.debian.org/debian forky/main arm64 python3-statsmodels all 0.14.5+dfsg-1 [4827 kB] Get: 171 http://deb.debian.org/debian forky/main arm64 python3-skbio arm64 0.6.3-1 [3715 kB] Get: 172 http://deb.debian.org/debian forky/main arm64 python3-iow arm64 1.0.8-1 [344 kB] Get: 173 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 174 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 175 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 176 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 177 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 178 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 94.9 MB in 1s (182 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.8-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.8-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.8-1_arm64.deb ... Unpacking python3.13-minimal (3.13.8-1) ... Setting up libpython3.13-minimal:arm64 (3.13.8-1) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20334 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.8-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.8-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.8-1_arm64.deb ... Unpacking python3.13 (3.13.8-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21349 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package python3-numpy-dev:arm64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1.2_arm64.deb ... Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1.2) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../002-libblas3_3.12.1-7_arm64.deb ... Unpacking libblas3:arm64 (3.12.1-7) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../003-libgfortran5_15.2.0-4_arm64.deb ... Unpacking libgfortran5:arm64 (15.2.0-4) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../004-liblapack3_3.12.1-7_arm64.deb ... Unpacking liblapack3:arm64 (3.12.1-7) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1.2_arm64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1.2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../007-openssl_3.5.4-1_arm64.deb ... Unpacking openssl (3.5.4-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../008-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../010-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... 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Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblapack3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:arm64 (3.10.2-1) ... Setting up libtool (2.5.4-5) ... Setting up libaec-dev:arm64 (1.1.4-2) ... Setting up libjpeg-dev:arm64 (1:2.1.5-4) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libngtcp2-dev:arm64 (1.16.0-1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. 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Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-hdmedians (0.14.2-6+b1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-statsmodels-lib:arm64 (0.14.5+dfsg-1) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-5) ... Setting up dh-python (6.20250414) ... Setting up libgnutls28-dev:arm64 (3.8.10-2) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up libpython3-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:arm64 (8.16.0-4) ... Setting up libkdb5-10t64:arm64 (1.21.3-5) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3.13-dev (3.13.8-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up python3-pandas-lib:arm64 (2.3.3+dfsg-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.28) ... Setting up python3-pytz (2025.2-4) ... Setting up dh-exec (0.30+b1) ... Setting up python3-patsy (1.0.1-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-pandas (2.3.3+dfsg-1) ... Setting up libpython3-all-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libhdf5-310:arm64 (1.14.5+repack-4) ... Setting up python3-statsmodels (0.14.5+dfsg-1) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-5) ... Setting up libhdf5-fortran-310:arm64 (1.14.5+repack-4) ... Setting up krb5-multidev:arm64 (1.21.3-5) ... Setting up libhdf5-cpp-310:arm64 (1.14.5+repack-4) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up libhdf5-hl-310:arm64 (1.14.5+repack-4) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up libssu0:arm64 (1.4-3+b4) ... Setting up python3-h5py-serial (3.14.0-3) ... Setting up libkrb5-dev:arm64 (1.21.3-5) ... Setting up libcurl4-openssl-dev:arm64 (8.16.0-4) ... Setting up python3-h5py (3.14.0-3) ... Setting up libhdf5-hl-cpp-310:arm64 (1.14.5+repack-4) ... Setting up libhdf5-hl-fortran-310:arm64 (1.14.5+repack-4) ... Setting up libssu-dev:arm64 (1.4-3+b4) ... Setting up python3-biom-format (2.1.16-1+b5) ... Setting up python3-skbio (0.6.3-1) ... Setting up libhdf5-dev (1.14.5+repack-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-iow (1.0.8-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/unifrac-1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../unifrac_1.3-4_source.changes dpkg-buildpackage: info: source package unifrac dpkg-buildpackage: info: source version 1.3-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running clean removing '/build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac copying unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests copying unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests creating /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data running build_ext Compiling SSU building 'unifrac._api' extension creating build/temp.linux-aarch64-cpython-313/unifrac aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wno-error=incompatible-pointer-types -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c unifrac/_api.c -o build/temp.linux-aarch64-cpython-313/unifrac/_api.o In file included from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, from unifrac/_api.c:1255: /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ unifrac/_api.c: In function '__pyx_f_7unifrac_4_api_construct_support_bptree': unifrac/_api.c:27601:32: warning: assignment to '_Bool *' from incompatible pointer type '__pyx_t_7unifrac_4_api_bool *' {aka 'unsigned char *'} [-Wincompatible-pointer-types] 27601 | __pyx_v_sp_bptree->structure = __pyx_v_structure; | ^ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/unifrac-1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wno-error=incompatible-pointer-types -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/unifrac/_api.o -L/usr/lib/aarch64-linux-gnu -lssu -o /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_api.cpython-313-aarch64-linux-gnu.so /usr/lib/aarch64-linux-gnu/libssu.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build; python3.13 -m pytest --pyargs unifrac ============================= test session starts ============================== platform linux -- Python 3.13.8, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/unifrac-1.3 plugins: typeguard-4.4.4 collected 49 items unifrac/tests/test_api.py ........................................ [ 81%] unifrac/tests/test_methods.py ......... [100%] =============================== warnings summary =============================== unifrac/__init__.py:9 /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) .pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_zero_branches_omitted /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` self.assertAlmostEqual(actual[0], expected) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 49 passed, 4 warnings in 26.01s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-unifrac/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/unifrac-1.3/debian/python3-unifrac running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext Compiling SSU running install_lib creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_meta.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/_methods.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_api.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__pycache__ creating /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.group.tsv -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/crawford.tre -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/e1.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/e2.biom -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/t1.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/t2.newick -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/data/test.faith.exp -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/data copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/tests/test_api.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_meta.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/_methods.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac copying /build/reproducible-path/unifrac-1.3/.pybuild/cpython3_3.13_unifrac/build/unifrac/__init__.py -> /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/tests/test_api.py to test_api.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/_meta.py to _meta.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/_methods.py to _methods.cpython-313.pyc byte-compiling /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info creating unifrac.egg-info writing unifrac.egg-info/PKG-INFO writing dependency_links to unifrac.egg-info/dependency_links.txt writing requirements to unifrac.egg-info/requires.txt writing top-level names to unifrac.egg-info/top_level.txt writing manifest file 'unifrac.egg-info/SOURCES.txt' dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/aarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency unifrac/api.hpp won't be automatically included in the manifest: the path must be inside the project root dependency unifrac/status_enum.hpp won't be automatically included in the manifest: the path must be inside the project root reading manifest file 'unifrac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'unifrac.egg-info/SOURCES.txt' Copying unifrac.egg-info to /build/reproducible-path/unifrac-1.3/debian/python3-unifrac/usr/lib/python3.13/dist-packages/unifrac-1.3.0.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/unifrac-1.3' dh_numpy3 Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. make[1]: Leaving directory '/build/reproducible-path/unifrac-1.3' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-unifrac' in '../python3-unifrac_1.3-4_arm64.deb'. dpkg-deb: building package 'python3-unifrac-dbgsym' in '../python3-unifrac-dbgsym_1.3-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../unifrac_1.3-4_arm64.buildinfo dpkg-genchanges --build=binary -O../unifrac_1.3-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1009136 and its subdirectories I: Current time: Sun Oct 19 19:12:37 -12 2025 I: pbuilder-time-stamp: 1760944357 Mon Oct 20 07:12:38 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Mon Oct 20 07:12:38 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Mon Oct 20 07:14:21 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Mon Oct 20 07:14:21 UTC 2025 I: unifrac_1.3-4_arm64.changes: Format: 1.8 Date: Sun, 08 Sep 2024 12:56:59 +0200 Source: unifrac Binary: python3-unifrac python3-unifrac-dbgsym Architecture: arm64 Version: 1.3-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: python3-unifrac - high-performance phylogenetic diversity calculations Closes: 1075607 Changes: unifrac (1.3-4) unstable; urgency=medium . * Team upload. * d/rules: add workaround for https://bugs.debian.org/1077205. Closes: #1075607 * d/rules: move cleanup to d/clean * Switch to pytest, and using pybuild-autopkgtest * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 067db717dae7a4d611b2ab34179d10ecbe5ce14a 520308 python3-unifrac-dbgsym_1.3-4_arm64.deb 6b10e560ae778f4bc9d6d481ab2fb3a7353a0171 134192 python3-unifrac_1.3-4_arm64.deb 018d12d690380aae6a002cd17a1e6df064a6fede 9641 unifrac_1.3-4_arm64.buildinfo Checksums-Sha256: cd610e24c989b318a4bf267718b92302c5372e91a5158a7c23e0c4e7f15cd242 520308 python3-unifrac-dbgsym_1.3-4_arm64.deb c678b0f5f2a48e213019212908d8bf68ca0f5cacd1aa4d39075b4dba5cb4b6aa 134192 python3-unifrac_1.3-4_arm64.deb 0451c95316d21c90e021e71543ad3b25a08e3abccc78ea148739e0396e4f0fcb 9641 unifrac_1.3-4_arm64.buildinfo Files: 9d3088b85378fdb4bc23e154086e0aad 520308 debug optional python3-unifrac-dbgsym_1.3-4_arm64.deb 837ae13d25dd72d93f76e9644c457495 134192 python optional python3-unifrac_1.3-4_arm64.deb 434a28d721d453e5c6530fe45cc65c83 9641 science optional unifrac_1.3-4_arm64.buildinfo Mon Oct 20 07:14:22 UTC 2025 I: diffoscope 306 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_10-100961.service; invocation ID: 494d0cca3ceb49ba9ea20d54e372296f # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1o2syMxf/unifrac_1.3-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1o2syMxf/unifrac_1.3-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1o2syMxf/unifrac_1.3-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1o2syMxf/b1/unifrac_1.3-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.1o2syMxf/b2/unifrac_1.3-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 219ms CPU time consumed: 174ms Memory peak: 17.6M (swap: 0B) Mon Oct 20 07:14:22 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Mon Oct 20 07:14:22 UTC 2025 I: unifrac from forky built successfully and reproducibly on arm64. Mon Oct 20 07:14:23 UTC 2025 I: Removing signed unifrac_1.3-4_arm64.buildinfo.asc files: removed './b1/unifrac_1.3-4_arm64.buildinfo.asc' removed './b2/unifrac_1.3-4_arm64.buildinfo.asc'