Thu Aug 28 18:54:47 UTC 2025 I: starting to build vsearch/forky/arm64 on jenkins on '2025-08-28 18:54' Thu Aug 28 18:54:47 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/93498/console.log Thu Aug 28 18:54:47 UTC 2025 I: Downloading source for forky/vsearch=2.30.0-1 --2025-08-28 18:54:47-- http://deb.debian.org/debian/pool/main/v/vsearch/vsearch_2.30.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2355 (2.3K) [text/prs.lines.tag] Saving to: ‘vsearch_2.30.0-1.dsc’ 0K .. 100% 261M=0s 2025-08-28 18:54:47 (261 MB/s) - ‘vsearch_2.30.0-1.dsc’ saved [2355/2355] Thu Aug 28 18:54:47 UTC 2025 I: vsearch_2.30.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: vsearch Binary: vsearch, vsearch-examples Architecture: any all Version: 2.30.0-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/torognes/vsearch/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/vsearch Vcs-Git: https://salsa.debian.org/med-team/vsearch.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, zlib1g-dev, libbz2-dev, libtext-markdown-perl, ghostscript, libsimde-dev [!amd64 !arm64 !ppc64el], time Package-List: vsearch deb science optional arch=any vsearch-examples deb science optional arch=all Checksums-Sha1: 775f96cde6e4253bd39223069d1cde2f09e19e8d 285775 vsearch_2.30.0.orig.tar.gz c3f34387682b2ce3aa9d9cff6565c2f21045c558 1632444 vsearch_2.30.0-1.debian.tar.xz Checksums-Sha256: 6d11ce960206ab64cf6d7907e539348d192a5b3f32f82d37c9bfbc4d789b576c 285775 vsearch_2.30.0.orig.tar.gz 4689db6ab87d0a3a7fef9b4670529ff2294410fef4105ac9a27d45a131ea129f 1632444 vsearch_2.30.0-1.debian.tar.xz Files: 4ff4e9a32b8b75e4ed80b8ccb6fc9a9e 285775 vsearch_2.30.0.orig.tar.gz 677575a0cfc1ab0a95e81e878ef6a805 1632444 vsearch_2.30.0-1.debian.tar.xz Dgit: 63a6c97bd6a59408c2063831f247eff77a2a8b9a debian archive/debian/2.30.0-1 https://git.dgit.debian.org/vsearch -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmfITUoUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpRSg/8CatlLDzVOKnaWJAIMSxoniUa6m/x 5q7zPrALCvorQrxAYzTmCJxS8lyLqVrqZeDv4+dGf8AB0mgc+XcvLUsKHiGdUg9m 0UaDzouXd5GP7Aw8CG7LXtkp50/3lfcWMDbWChBNx30U+H0/tFXZdSm3fvA8/h0Q B4CJwQTDWl81kPG59hgNzKwHZyxRiKwiuTnZI/YbPqIDSaniWWTiMDpCBylCHsiW bReatN82D3ass+s9kEkos0Hs+4J6w9H03qYyWtF2RlI0LTGRVwLQdRbgc06UKGZJ XldqYJMfA2cz0ZC4kbV1pUOuXpWNuwaG82OmXnLDslr2JUSnBxNB0LZ0ugiqgfAY mgtCEdHk5TvhI4ypNX5CG1TzI731jse93CSWfFcBNs2cwxucJ40yMgMbBI+4KlL8 XufJR3Th7wH9JNEqvPpoUwRWieqpBxpVPoBj012T1jH3Vxoz/89v5uuVXgsFnyw3 xBVLFeTMSPJhO/eBhuCDzT8sYu50xRe095cBXGe7mAMFPw57wLghvvdg8l6Sm3K4 KAajnDHcJ5I3ek94WJibGOp0DvPCzQMEBzVPcR2tQeyygOiCeG4DAodoz/XeyJEg 6JiukR0Z3NSF1eqT8uUlN7lELVkRUM+qn/teQYmE4LAFFhOHPnB9UXRyN/fzLybO 9FpuWmsAJvzOqn4= =0XSU -----END PGP SIGNATURE----- Thu Aug 28 18:54:47 UTC 2025 I: Checking whether the package is not for us Thu Aug 28 18:54:47 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Aug 28 18:54:47 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Aug 28 18:55:52 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Aug 28 06:54:48 -12 2025 I: pbuilder-time-stamp: 1756407288 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [vsearch_2.30.0-1.dsc] I: copying [./vsearch_2.30.0.orig.tar.gz] I: copying [./vsearch_2.30.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./vsearch_2.30.0-1.dsc: no acceptable signature found dpkg-source: info: extracting vsearch in vsearch-2.30.0 dpkg-source: info: unpacking vsearch_2.30.0.orig.tar.gz dpkg-source: info: unpacking vsearch_2.30.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying occurrences.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1188473/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='41550239529d4a4c8bb9c695618a6266' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1188473' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cxbPOVYk/pbuilderrc_Z1N6 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cxbPOVYk/b1 --logfile b1/build.log vsearch_2.30.0-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.41+deb13-cloud-arm64 #1 SMP Debian 6.12.41-1 (2025-08-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1188473/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, zlib1g-dev, libbz2-dev, libtext-markdown-perl, ghostscript, time dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libtext-markdown-perl; however: Package libtext-markdown-perl is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on time; however: Package time is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcups2t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libgnutls30t64{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libice6{a} libidn12{a} libidn2-0{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libp11-kit0{a} libpaper2{a} libpipeline1{a} libpng16-16t64{a} libsharpyuv0{a} libsm6{a} libtasn1-6{a} libtext-markdown-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2-16{a} libxt6t64{a} m4{a} man-db{a} po-debconf{a} poppler-data{a} sensible-utils{a} time{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl dbus fonts-droid-fallback krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx wget 0 packages upgraded, 87 newly installed, 0 to remove and 0 not upgraded. Need to get 36.4 MB of archives. After unpacking 127 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 poppler-data all 0.4.12-1 [1601 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-1 [93.8 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 14 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.25 [91.6 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-4 [539 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.14.2-1 [19.8 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.14.2-1 [8768 B] Get: 25 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.1 [583 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 debhelper all 13.25 [937 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 41 http://deb.debian.org/debian forky/main arm64 fontconfig-config arm64 2.15.0-2.3 [318 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libgs-common all 10.05.1~dfsg-1 [148 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libgs10-common all 10.05.1~dfsg-1 [479 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libavahi-common-data arm64 0.8-16 [112 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libavahi-common3 arm64 0.8-16 [43.3 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libdbus-1-3 arm64 1.16.2-2 [169 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libavahi-client3 arm64 0.8-16 [46.7 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.9-3 [1375 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 57 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libcups2t64 arm64 2.4.10-3 [235 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libfontconfig1 arm64 2.15.0-2.3 [387 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libidn12 arm64 1.43-2 [47.0 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libijs-0.35 arm64 0.35-15.3 [14.6 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libjbig2dec0 arm64 0.20-1+b3 [60.1 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [189 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libpaper2 arm64 2.2.5-0.3+b2 [16.6 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libtiff6 arm64 4.7.0-4 [325 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b2 [173 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libgs10 arm64 10.05.1~dfsg-1 [2356 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 ghostscript arm64 10.05.1~dfsg-1 [50.3 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libtext-markdown-perl all 1.000031-5 [31.4 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 time arm64 1.9-0.2+b1 [48.1 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 36.4 MB in 0s (196 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package poppler-data. Preparing to unpack .../01-poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.41.1-1_arm64.deb ... Unpacking bsdextrautils (2.41.1-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package architecture-properties:arm64. Preparing to unpack .../12-architecture-properties_0.2.6_arm64.deb ... Unpacking architecture-properties:arm64 (0.2.6) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.25_all.deb ... Unpacking libdebhelper-perl (13.25) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.14.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.14.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.2-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../24-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../26-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../27-libxml2-16_2.14.5+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.25_all.deb ... Unpacking debhelper (13.25) ... Selecting previously unselected package libfontenc1:arm64. Preparing to unpack .../32-libfontenc1_1%3a1.1.8-1+b2_arm64.deb ... Unpacking libfontenc1:arm64 (1:1.1.8-1+b2) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../33-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../34-libpng16-16t64_1.6.50-1_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.50-1) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../35-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../36-x11-common_1%3a7.7+24_all.deb ... Unpacking x11-common (1:7.7+24) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../37-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../38-xfonts-utils_1%3a7.7+7_arm64.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../39-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../40-fontconfig-config_2.15.0-2.3_arm64.deb ... Unpacking fontconfig-config (2.15.0-2.3) ... Selecting previously unselected package libgs-common. Preparing to unpack .../41-libgs-common_10.05.1~dfsg-1_all.deb ... Unpacking libgs-common (10.05.1~dfsg-1) ... Selecting previously unselected package libgs10-common. Preparing to unpack .../42-libgs10-common_10.05.1~dfsg-1_all.deb ... Unpacking libgs10-common (10.05.1~dfsg-1) ... Selecting previously unselected package libavahi-common-data:arm64. Preparing to unpack .../43-libavahi-common-data_0.8-16_arm64.deb ... Unpacking libavahi-common-data:arm64 (0.8-16) ... Selecting previously unselected package libavahi-common3:arm64. Preparing to unpack .../44-libavahi-common3_0.8-16_arm64.deb ... Unpacking libavahi-common3:arm64 (0.8-16) ... Selecting previously unselected package libdbus-1-3:arm64. Preparing to unpack .../45-libdbus-1-3_1.16.2-2_arm64.deb ... Unpacking libdbus-1-3:arm64 (1.16.2-2) ... Selecting previously unselected package libavahi-client3:arm64. Preparing to unpack .../46-libavahi-client3_0.8-16_arm64.deb ... Unpacking libavahi-client3:arm64 (0.8-16) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../47-libidn2-0_2.3.8-4_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-4) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../48-libffi8_3.4.8-2_arm64.deb ... Unpacking libffi8:arm64 (3.4.8-2) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../49-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../50-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../51-libgnutls30t64_3.8.9-3_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.9-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../52-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../53-libcom-err2_1.47.2-3+b3_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../54-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../55-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../56-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../57-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libcups2t64:arm64. Preparing to unpack .../58-libcups2t64_2.4.10-3_arm64.deb ... Unpacking libcups2t64:arm64 (2.4.10-3) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../59-libfontconfig1_2.15.0-2.3_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-2.3) ... Selecting previously unselected package libidn12:arm64. Preparing to unpack .../60-libidn12_1.43-2_arm64.deb ... Unpacking libidn12:arm64 (1.43-2) ... Selecting previously unselected package libijs-0.35:arm64. Preparing to unpack .../61-libijs-0.35_0.35-15.3_arm64.deb ... Unpacking libijs-0.35:arm64 (0.35-15.3) ... Selecting previously unselected package libjbig2dec0:arm64. Preparing to unpack .../62-libjbig2dec0_0.20-1+b3_arm64.deb ... Unpacking libjbig2dec0:arm64 (0.20-1+b3) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../63-libjpeg62-turbo_1%3a2.1.5-4_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-4) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../64-liblcms2-2_2.16-2_arm64.deb ... Unpacking liblcms2-2:arm64 (2.16-2) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../65-libopenjp2-7_2.5.3-2.1_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.3-2.1) ... Selecting previously unselected package libpaper2:arm64. Preparing to unpack .../66-libpaper2_2.2.5-0.3+b2_arm64.deb ... Unpacking libpaper2:arm64 (2.2.5-0.3+b2) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../67-libdeflate0_1.23-2_arm64.deb ... Unpacking libdeflate0:arm64 (1.23-2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../68-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../69-liblerc4_4.0.0+ds-5_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-5) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../70-libsharpyuv0_1.5.0-0.1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../71-libwebp7_1.5.0-0.1_arm64.deb ... Unpacking libwebp7:arm64 (1.5.0-0.1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../72-libtiff6_4.7.0-4_arm64.deb ... Unpacking libtiff6:arm64 (4.7.0-4) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../73-libxau6_1%3a1.0.11-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../74-libxdmcp6_1%3a1.1.5-1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../75-libxcb1_1.17.0-2+b1_arm64.deb ... Unpacking libxcb1:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../76-libx11-data_2%3a1.8.12-1_all.deb ... Unpacking libx11-data (2:1.8.12-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../77-libx11-6_2%3a1.8.12-1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.12-1) ... Selecting previously unselected package libice6:arm64. Preparing to unpack .../78-libice6_2%3a1.1.1-1_arm64.deb ... Unpacking libice6:arm64 (2:1.1.1-1) ... Selecting previously unselected package libsm6:arm64. Preparing to unpack .../79-libsm6_2%3a1.2.6-1_arm64.deb ... Unpacking libsm6:arm64 (2:1.2.6-1) ... Selecting previously unselected package libxt6t64:arm64. Preparing to unpack .../80-libxt6t64_1%3a1.2.1-1.2+b2_arm64.deb ... Unpacking libxt6t64:arm64 (1:1.2.1-1.2+b2) ... Selecting previously unselected package libgs10:arm64. Preparing to unpack .../81-libgs10_10.05.1~dfsg-1_arm64.deb ... Unpacking libgs10:arm64 (10.05.1~dfsg-1) ... Selecting previously unselected package ghostscript. Preparing to unpack .../82-ghostscript_10.05.1~dfsg-1_arm64.deb ... Unpacking ghostscript (10.05.1~dfsg-1) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../83-libbz2-dev_1.0.8-6_arm64.deb ... Unpacking libbz2-dev:arm64 (1.0.8-6) ... Selecting previously unselected package libtext-markdown-perl. Preparing to unpack .../84-libtext-markdown-perl_1.000031-5_all.deb ... Unpacking libtext-markdown-perl (1.000031-5) ... Selecting previously unselected package time. Preparing to unpack .../85-time_1.9-0.2+b1_arm64.deb ... Unpacking time (1.9-0.2+b1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../86-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libexpat1:arm64 (2.7.1-2) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up liblcms2-2:arm64 (2.16-2) ... Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... Setting up libtext-markdown-perl (1.000031-5) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up time (1.9-0.2+b1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.41.1-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up architecture-properties:arm64 (0.2.6) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.1) ... Setting up libijs-0.35:arm64 (0.35-15.3) ... Setting up libdebhelper-perl (13.25) ... Setting up libgs-common (10.05.1~dfsg-1) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:arm64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.19-8) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up poppler-data (0.4.12-1) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20240727.1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libjbig2dec0:arm64 (0.20-1+b3) ... Setting up libavahi-common-data:arm64 (0.8-16) ... Setting up libdbus-1-3:arm64 (1.16.2-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up libpng16-16t64:arm64 (1.6.50-1) ... Setting up libidn12:arm64 (1.43-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up autoconf (2.72-3.1) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.26) ... Setting up libtiff6:arm64 (4.7.0-4) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libopenjp2-7:arm64 (2.5.3-2.1) ... Setting up libx11-6:arm64 (2:1.8.12-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libpaper2:arm64 (2.2.5-0.3+b2) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.2-1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-4) ... Setting up libavahi-common3:arm64 (0.8-16) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up dh-strip-nondeterminism (1.14.2-1) ... Setting up groff-base (1.23.0-9) ... Setting up libsm6:arm64 (2:1.2.6-1) ... Setting up libavahi-client3:arm64 (0.8-16) ... Setting up libgnutls30t64:arm64 (3.8.9-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxt6t64:arm64 (1:1.2.1-1.2+b2) ... Setting up libcups2t64:arm64 (2.4.10-3) ... Setting up debhelper (13.25) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libgs10-common (10.05.1~dfsg-1) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libfontconfig1:arm64 (2.15.0-2.3) ... Setting up libgs10:arm64 (10.05.1~dfsg-1) ... Setting up ghostscript (10.05.1~dfsg-1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/vsearch-2.30.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../vsearch_2.30.0-1_source.changes dpkg-buildpackage: info: source package vsearch dpkg-buildpackage: info: source version 2.30.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules execute_after_dh_clean make[1]: Entering directory '/build/reproducible-path/vsearch-2.30.0' if [ -d test ] ; then find test -mindepth 1 -not -name '*.sh' -delete ; fi rm -f *.out make[1]: Leaving directory '/build/reproducible-path/vsearch-2.30.0' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:103: installing './compile' configure.ac:6: installing './config.guess' configure.ac:6: installing './config.sub' configure.ac:7: installing './install-sh' configure.ac:7: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking target system type... aarch64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for ranlib... ranlib checking for pthread_create in -lpthread... yes checking for dlopen in -ldl... yes checking for GetProcessMemoryInfo in -lpsapi... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for getopt.h... yes checking for fcntl.h... yes checking for float.h... yes checking for regex.h... yes checking for ctype.h... yes checking for locale.h... yes checking for limits.h... yes checking for string.h... (cached) yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for pthread.h... yes checking for inline... inline checking for size_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for memmove... yes checking for memcpy... yes checking for posix_memalign... yes checking for gettimeofday... yes checking for localtime... yes checking for memchr... yes checking for memset... yes checking for pow... yes checking for regcomp... yes checking for strcasecmp... yes checking for strchr... yes checking for strcspn... yes checking for sysinfo... yes checking for bzlib.h... yes checking for zlib.h... yes checking for ps2pdf... yes checking for windows.h... no checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/vsearch-2.30.0' make all-recursive make[2]: Entering directory '/build/reproducible-path/vsearch-2.30.0' Making all in src make[3]: Entering directory '/build/reproducible-path/vsearch-2.30.0/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o align_simd.o align_simd.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o allpairs.o allpairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o arch.o arch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o attributes.o attributes.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o bitmap.o bitmap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o chimera.o chimera.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o cluster.o cluster.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o cut.o cut.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o db.o db.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o dbhash.o dbhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o dbindex.o dbindex.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o derep.o derep.cc align_simd.cc: In function 'void search16(s16info_s*, unsigned int, unsigned int*, CELL*, short unsigned int*, short unsigned int*, short unsigned int*, short unsigned int*, char**)': align_simd.cc:148:69: warning: ISO C++ forbids compound-literals [-Wpedantic] 148 | #define v_init(a,b,c,d,e,f,g,h) (const VECTOR_SHORT){a,b,c,d,e,f,g,h} | ^ align_simd.cc:1375:8: note: in expansion of macro 'v_init' 1375 | T0 = v_init(-1, 0, 0, 0, 0, 0, 0, 0); | ^~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o derep_prefix.o derep_prefix.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o derep_smallmem.o derep_smallmem.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o dynlibs.o dynlibs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o eestats.o eestats.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fasta2fastq.o fasta2fastq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fasta.o fasta.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fastq.o fastq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fastq_chars.o fastq_chars.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fastq_join.o fastq_join.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fastqops.o fastqops.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o fastx.o fastx.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o filter.o filter.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o getseq.o getseq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o kmerhash.o kmerhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o linmemalign.o linmemalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o maps.o maps.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o mask.o mask.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o md5.o md5.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o mergepairs.o mergepairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o minheap.o minheap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o msa.o msa.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o orient.o orient.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o otutable.o otutable.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o rereplicate.o rereplicate.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o results.o results.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o search.o search.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o searchcore.o searchcore.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o search_exact.o search_exact.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o sff_convert.o sff_convert.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o sha1.o sha1.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o showalign.o showalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o shuffle.o shuffle.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o sintax.o sintax.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o sortbylength.o sortbylength.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o sortbysize.o sortbysize.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o subsample.o subsample.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o tax.o tax.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o udb.o udb.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o unique.o unique.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o userfields.o userfields.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o util.o util.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o vsearch.o vsearch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -Wno-sign-compare -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o libcityhash_a-city.o `test -f 'city.cc' || echo './'`city.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o cpu.o cpu.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o utils/maps.o utils/maps.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -c -o utils/seqcmp.o utils/seqcmp.cc rm -f libcityhash.a ar cr libcityhash.a libcityhash_a-city.o ranlib libcityhash.a rm -f libcpu.a ar cr libcpu.a cpu.o ranlib libcpu.a g++ -Wall -Wextra -Wpedantic -march=armv8-a+simd -mtune=generic -DNDEBUG -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/vsearch-2.30.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -flto -std=c++11 -Wl,-z,relro -Wl,-z,now -flto -o ../bin/vsearch align_simd.o allpairs.o arch.o attributes.o bitmap.o chimera.o cluster.o cut.o db.o dbhash.o dbindex.o derep.o derep_prefix.o derep_smallmem.o dynlibs.o eestats.o fasta2fastq.o fasta.o fastq.o fastq_chars.o fastq_join.o fastqops.o fastx.o filter.o getseq.o kmerhash.o linmemalign.o maps.o mask.o md5.o mergepairs.o minheap.o msa.o orient.o otutable.o rereplicate.o results.o search.o searchcore.o search_exact.o sff_convert.o sha1.o showalign.o shuffle.o sintax.o sortbylength.o sortbysize.o subsample.o tax.o udb.o unique.o userfields.o util.o utils/maps.o utils/seqcmp.o vsearch.o libcityhash.a libcpu.a -ldl -lpthread cut.cc:74:8: warning: type 'struct statistics' violates the C++ One Definition Rule [-Wodr] 74 | struct statistics { | ^ fastq_chars.cc:79:8: note: a different type is defined in another translation unit 79 | struct statistics { | ^ cut.cc:75:7: note: the first difference of corresponding definitions is field 'fragment_no' 75 | int fragment_no = 0; | ^ fastq_chars.cc:80:25: note: a field with different name is defined in another translation unit 80 | std::vector sequence_chars; | ^ make[3]: Leaving directory '/build/reproducible-path/vsearch-2.30.0/src' Making all in man make[3]: Entering directory '/build/reproducible-path/vsearch-2.30.0/man' sed -e 's/\\-/-/g' vsearch.1 | \ iconv -f UTF-8 -t ISO-8859-1 | \ groff -W space -t -m mandoc -T ps -P -pa4 | ps2pdf - vsearch_manual.pdf troff::3622: warning [p 41, 8.1i]: cannot adjust line make[3]: Leaving directory '/build/reproducible-path/vsearch-2.30.0/man' make[3]: Entering directory '/build/reproducible-path/vsearch-2.30.0' make[3]: Leaving directory '/build/reproducible-path/vsearch-2.30.0' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.30.0' make[1]: Leaving directory '/build/reproducible-path/vsearch-2.30.0' debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/vsearch-2.30.0' markdown README.md > README.html # Remove redundant travis-build URL sed -i 1d README.html make[1]: Leaving directory '/build/reproducible-path/vsearch-2.30.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/vsearch-2.30.0' if [ -d /usr/share/vsearch/data ] ; then \ mkdir -p ../vsearch-data && \ for datadir in `find /usr/share/vsearch/data -type d | sed -e "s#/usr/share/vsearch/data/*##" -e "/^$/d"` ; do mkdir -p ../vsearch-data/${datadir} ; done && \ for datafile in `find /usr/share/vsearch/data -type f` ; do \ ln -s ${datafile} `echo ${datafile} | sed -e "s#/usr/share/vsearch/data/#../vsearch-data/#"` ; \ done && \ zcat ../vsearch-data/BioMarKs.fsa.gz > ../vsearch-data/BioMarKs.fsa && \ cd test && \ for t in *.sh ; do \ bash $t v ; \ done && \ cd .. && \ rm -rf ../vsearch-data ; \ fi make[1]: Leaving directory '/build/reproducible-path/vsearch-2.30.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/vsearch-2.30.0/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/vsearch-2.30.0' Making install in src make[2]: Entering directory '/build/reproducible-path/vsearch-2.30.0/src' make[3]: Entering directory '/build/reproducible-path/vsearch-2.30.0/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/vsearch-2.30.0/debian/tmp/usr/bin' /usr/bin/install -c ../bin/vsearch '/build/reproducible-path/vsearch-2.30.0/debian/tmp/usr/bin' make[3]: Leaving directory '/build/reproducible-path/vsearch-2.30.0/src' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.30.0/src' Making install in man make[2]: Entering directory '/build/reproducible-path/vsearch-2.30.0/man' make[3]: Entering directory '/build/reproducible-path/vsearch-2.30.0/man' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/vsearch-2.30.0/debian/tmp/usr/share/doc/vsearch' /usr/bin/mkdir -p '/build/reproducible-path/vsearch-2.30.0/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 vsearch_manual.pdf '/build/reproducible-path/vsearch-2.30.0/debian/tmp/usr/share/doc/vsearch' /usr/bin/install -c -m 644 vsearch.1 '/build/reproducible-path/vsearch-2.30.0/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/vsearch-2.30.0/man' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.30.0/man' make[2]: Entering directory '/build/reproducible-path/vsearch-2.30.0' make[3]: Entering directory '/build/reproducible-path/vsearch-2.30.0' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/vsearch-2.30.0' make[2]: Leaving directory '/build/reproducible-path/vsearch-2.30.0' make[1]: Leaving directory '/build/reproducible-path/vsearch-2.30.0' dh_install debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/vsearch-2.30.0' # tweak path to vsearch binary in test scripts if [ -d test ] ; then \ mkdir -p /build/reproducible-path/vsearch-2.30.0/debian/vsearch/usr/share/doc/vsearch/test ; \ for tst in test/*.sh ; do sed 's?\.\./bin/vsearch?/usr/bin/vsearch?' ${tst} > /build/reproducible-path/vsearch-2.30.0/debian/vsearch/usr/share/doc/vsearch/${tst} ; done ; \ fi make[1]: Leaving directory '/build/reproducible-path/vsearch-2.30.0' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/vsearch-2.30.0' dpkg-query: no packages found matching libsimde-dev dh_gencontrol -- -Vsimde:Built-Using="" dpkg-gencontrol: warning: Depends field of package vsearch-examples: substitution variable ${shlibs:Depends} used, but is not defined make[1]: Leaving directory '/build/reproducible-path/vsearch-2.30.0' dh_md5sums dh_builddeb dpkg-deb: building package 'vsearch-examples' in '../vsearch-examples_2.30.0-1_all.deb'. dpkg-deb: building package 'vsearch-dbgsym' in '../vsearch-dbgsym_2.30.0-1_arm64.deb'. dpkg-deb: building package 'vsearch' in '../vsearch_2.30.0-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../vsearch_2.30.0-1_arm64.buildinfo dpkg-genchanges --build=binary -O../vsearch_2.30.0-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1188473 and its subdirectories I: Current time: Thu Aug 28 06:55:51 -12 2025 I: pbuilder-time-stamp: 1756407351 Thu Aug 28 18:55:52 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu Aug 28 18:55:52 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu Aug 28 18:56:55 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu Aug 28 18:56:55 UTC 2025 I: vsearch_2.30.0-1_arm64.changes: Format: 1.8 Date: Wed, 05 Mar 2025 13:55:57 +0100 Source: vsearch Binary: vsearch vsearch-dbgsym vsearch-examples Architecture: arm64 all Version: 2.30.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: vsearch - tool for processing metagenomic sequences vsearch-examples - Test Data for vsearch tool for processing metagenomic sequences Changes: vsearch (2.30.0-1) unstable; urgency=medium . * New upstream version 2.30.0 * d/control: declare compliance to standards version 4.7.2. * occurrences.patch: new: fix typo caught by lintian. Checksums-Sha1: 973cabb189dee9aa14e3735a1d216837a31b3314 1125860 vsearch-dbgsym_2.30.0-1_arm64.deb b011055ec9facb5c3f6423f15c8b2ed8268b3f11 3479564 vsearch-examples_2.30.0-1_all.deb 447dc6f74d0fd246ff692f839fbfc4b6d9e19c31 6888 vsearch_2.30.0-1_arm64.buildinfo f080e869f7ef500fc5e983031a57e3dd5c01ae03 413500 vsearch_2.30.0-1_arm64.deb Checksums-Sha256: 34b899c519b14382bc8b12204b80cef9cb8c952a75f4206544c0413615512940 1125860 vsearch-dbgsym_2.30.0-1_arm64.deb 4339d9e785f94cfb437adea0f1ebebcd327005c5ed22cdeec65b8a721ec1384b 3479564 vsearch-examples_2.30.0-1_all.deb 1bd03b27b32db38af99aea5f91e54441168f793a499f9fe5eaf9e1a5aa0253ca 6888 vsearch_2.30.0-1_arm64.buildinfo 1fc2869c24869db8c7b0a5d93240fad4078c57cf58bb75662f0e75fb1324a3cc 413500 vsearch_2.30.0-1_arm64.deb Files: c3661b4fba5f6b586194974551497feb 1125860 debug optional vsearch-dbgsym_2.30.0-1_arm64.deb ec80a66a127dd4e67ece5b2f99d68f72 3479564 science optional vsearch-examples_2.30.0-1_all.deb 66702c218cd7f970c2ae8484fbd877ed 6888 science optional vsearch_2.30.0-1_arm64.buildinfo af1f1dc2c91e8ca6584bd8bce3f6e9f3 413500 science optional vsearch_2.30.0-1_arm64.deb Thu Aug 28 18:56:56 UTC 2025 I: diffoscope 305 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_10-93498.service; invocation ID: 80d45c71f07d44a887e5e03ed1b0f812 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.cxbPOVYk/vsearch_2.30.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.cxbPOVYk/vsearch_2.30.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.cxbPOVYk/vsearch_2.30.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.cxbPOVYk/b1/vsearch_2.30.0-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.cxbPOVYk/b2/vsearch_2.30.0-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 198ms CPU time consumed: 172ms Memory peak: 18M (swap: 0B) Thu Aug 28 18:56:56 UTC 2025 I: diffoscope 305 found no differences in the changes files, and a .buildinfo file also exists. Thu Aug 28 18:56:56 UTC 2025 I: vsearch from forky built successfully and reproducibly on arm64. Thu Aug 28 18:56:57 UTC 2025 I: Removing signed vsearch_2.30.0-1_arm64.buildinfo.asc files: removed './b1/vsearch_2.30.0-1_arm64.buildinfo.asc' removed './b2/vsearch_2.30.0-1_arm64.buildinfo.asc'