Fri Mar 7 15:57:42 UTC 2025 I: starting to build bifrost/trixie/amd64 on jenkins on '2025-03-07 15:57' Fri Mar 7 15:57:42 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_12/48447/console.log Fri Mar 7 15:57:42 UTC 2025 I: Downloading source for trixie/bifrost=1.3.1-1 --2025-03-07 15:57:43-- http://deb.debian.org/debian/pool/main/b/bifrost/bifrost_1.3.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2099 (2.0K) [text/prs.lines.tag] Saving to: ‘bifrost_1.3.1-1.dsc’ 0K .. 100% 282M=0s 2025-03-07 15:57:43 (282 MB/s) - ‘bifrost_1.3.1-1.dsc’ saved [2099/2099] Fri Mar 7 15:57:43 UTC 2025 I: bifrost_1.3.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: bifrost Binary: bifrost, libbifrost0, libbifrost-dev Architecture: any Version: 1.3.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/pmelsted/bifrost Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/bifrost Vcs-Git: https://salsa.debian.org/med-team/bifrost.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev Package-List: bifrost deb python optional arch=any libbifrost-dev deb libdevel optional arch=any libbifrost0 deb libs optional arch=any Checksums-Sha1: 9daeeab211c6f2bd19b8ac6ad12dac770e8f100f 349856 bifrost_1.3.1.orig.tar.gz bf0657121971cc5635e117f45f620bff5202026e 253052 bifrost_1.3.1-1.debian.tar.xz Checksums-Sha256: d6a9baacddba8e9508336c5adff15a8a482774c724fc0710392fed7bb9ad1e8b 349856 bifrost_1.3.1.orig.tar.gz 6b7fa56dd267ab84746d3169cf7a53471c6954176250fe88a7b074cc5fdb9676 253052 bifrost_1.3.1-1.debian.tar.xz Files: 71940660817cb6a0af24663bf00cc5db 349856 bifrost_1.3.1.orig.tar.gz efb8eacd113e4b5f264cea30b0fac580 253052 bifrost_1.3.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWXu9kRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHTbA/9GvD2gJsMd07oSzjZDNKKJro4Ah4HmBgv RvwYiR3GsIMQz8zgDkaW7CSOALqkaoypeGaNxVHIo7h4lrQYD7SNPMY92J0lToaW etQnjYW3a9Hiz+YejPMngKmNoQx+SLFHQ3wcFcU71sd/B1VfT5TvxB2rwpyKXB15 X6AKrzE1wkIrpmfW969602vNWoxDLp2D45hdpOKV2NuwVy717cuUFwAQpqyMDd08 drfpI8HBleUOdeC0XozdsRgXSf41i+6wlqseRWGPtWSXJDxB7A8ssNOPDnzxRvFs OOzIldoRhULsNgx+KSRSCeVUyhIYyVdgqWCgrjwiMT3TIxDAthdDwamadRfiSU97 n5Eol+doT0kOT2xM0lBCGylGLwhN5CDSXpab1435PINUiP8iTL34tqvAgyzZFLvp 4rIYwRiJrWzhOUFTurKqTOG6w5Du+4PgTT90FvOioAkuNBftQ0iaCCxmI9UPHPRx RiZKWfn6ClYMshvUZ3SV08u3MyOiQgNW76g8l0Mb7YeozAb899Vq2in2ih0KIDNe rQo+lnWvVWLXCRjXsQlIB83ZlbTnc+vvv2odNc6XdIC1xhAF3SkVN0lLeISgFXDK mgY32kM/oKk0KXkjIFwt99M1G+qWyktiFToE+9IdlgL/iShMznwajQOZwYjHrCfA SRlnI8+EJGc= =Lib9 -----END PGP SIGNATURE----- Fri Mar 7 15:57:43 UTC 2025 I: Checking whether the package is not for us Fri Mar 7 15:57:43 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Fri Mar 7 15:57:43 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Fri Mar 7 16:00:13 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 9 10:20:43 -12 2026 I: pbuilder-time-stamp: 1775773243 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bifrost_1.3.1-1.dsc] I: copying [./bifrost_1.3.1.orig.tar.gz] I: copying [./bifrost_1.3.1-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./bifrost_1.3.1-1.dsc: unsupported subcommand dpkg-source: info: extracting bifrost in bifrost-1.3.1 dpkg-source: info: unpacking bifrost_1.3.1.orig.tar.gz dpkg-source: info: unpacking bifrost_1.3.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_soname.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2760277/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f94c997a1b094918bcc5bb32b67e9b77' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2760277' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hrgiN0wD/pbuilderrc_4Vig --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hrgiN0wD/b1 --logfile b1/build.log bifrost_1.3.1-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2760277/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19800 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 41.7 MB of archives. After unpacking 150 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.6-1 [2268 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 27 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-3 [369 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.6-1 [12.0 MB] Get: 49 http://deb.debian.org/debian trixie/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 56 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 41.7 MB in 8s (5131 kB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19800 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-5_amd64.deb ... Unpacking bsdextrautils (2.40.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-5_amd64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/bifrost-1.3.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bifrost_1.3.1-1_source.changes dpkg-buildpackage: info: source package bifrost dpkg-buildpackage: info: source version 1.3.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.1' dh_auto_configure -- -DCOMPILATION_ARCH=OFF cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCOMPILATION_ARCH=OFF .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE Disabling native architecture compilation (including AVX2) Build type: Release Maximum k-mer size: 31 Maximum g-mer size: 31 -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") -- Configuring done (1.4s) -- 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/build/reproducible-path/bifrost-1.3.1/src/ColorSet.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp [ 31%] Building CXX object src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o [ 34%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp [ 37%] Building CXX object src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/CompressedSequence.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/Kmer.cpp [ 40%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/CompressedCoverage.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/Bifrost.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/FASTX_Parser.cpp [ 43%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o [ 46%] Building CXX object src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_static.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_static.dir/Kmer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/Kmer.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/KmerIterator.cpp [ 50%] Building CXX object src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o [ 53%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -MF CMakeFiles/bifrost_static.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BitContainer.cpp [ 56%] Building CXX object src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -MF CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o.d -o CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/FASTX_Parser.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BlockedBloomFilter.cpp [ 59%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BitContainer.cpp [ 62%] Building CXX object src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BlockedBloomFilter.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/CompressedCoverage.cpp [ 65%] Building CXX object src/CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -MF CMakeFiles/bifrost_static.dir/ColorSet.cpp.o.d -o CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/ColorSet.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/CompressedSequence.cpp [ 68%] Building CXX object src/CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/UnitigMap.cpp [ 71%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o [ 75%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o -MF CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o.d -o CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/KmerIterator.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/MinimizerIndex.cpp [ 78%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/MinimizerIndex.cpp [ 81%] Building C object src/CMakeFiles/bifrost_static.dir/roaring.c.o [ 84%] Building CXX object src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o [ 87%] Building C object src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/UnitigMap.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/roaring.c.o -MF CMakeFiles/bifrost_static.dir/roaring.c.o.d -o CMakeFiles/bifrost_static.dir/roaring.c.o -c /build/reproducible-path/bifrost-1.3.1/src/roaring.c cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/TinyBitmap.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/TinyBitmap.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o -MF CMakeFiles/bifrost_dynamic.dir/roaring.c.o.d -o CMakeFiles/bifrost_dynamic.dir/roaring.c.o -c /build/reproducible-path/bifrost-1.3.1/src/roaring.c In file included from /usr/include/c++/14/string:42, from /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.hpp:4, from /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp:1: In static member function 'static std::char_traits::char_type* std::char_traits::copy(char_type*, const char_type*, std::size_t)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:435:21, inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:430:7, inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy_chars(_CharT*, const _CharT*, const _CharT*) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:489:16, inlined from 'void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_construct(_InIterator, _InIterator, std::forward_iterator_tag) [with _FwdIterator = const char*; _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.tcc:247:21, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, size_type, const _Alloc&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:632:14, inlined from 'GFA_Parser::GFA_line GFA_Parser::read(size_t&, bool&, bool)' at /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp:553:122: /usr/include/c++/14/bits/char_traits.h:427:56: warning: argument 2 null where non-null expected [-Wnonnull] 427 | return static_cast(__builtin_memcpy(__s1, __s2, __n)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/char_traits.h:427:56: note: in a call to built-in function 'void* __builtin_memcpy(void*, const void*, long unsigned int)' In file included from /usr/include/c++/14/string:42, from /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.hpp:4, from /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp:1: In static member function 'static std::char_traits::char_type* std::char_traits::copy(char_type*, const char_type*, std::size_t)', inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:435:21, inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:430:7, inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy_chars(_CharT*, const _CharT*, const _CharT*) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:489:16, inlined from 'void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_construct(_InIterator, _InIterator, std::forward_iterator_tag) [with _FwdIterator = const char*; _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.tcc:247:21, inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, size_type, const _Alloc&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:632:14, inlined from 'GFA_Parser::GFA_line GFA_Parser::read(size_t&, bool&, bool)' at /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp:553:122: /usr/include/c++/14/bits/char_traits.h:427:56: warning: argument 2 null where non-null expected [-Wnonnull] 427 | return static_cast(__builtin_memcpy(__s1, __s2, __n)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/char_traits.h:427:56: note: in a call to built-in function 'void* __builtin_memcpy(void*, const void*, long unsigned int)' [ 90%] Linking CXX shared library libbifrost.so cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bifrost_dynamic.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,--dependency-file=CMakeFiles/bifrost_dynamic.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbifrost.so.0 -o libbifrost.so.0 CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o CMakeFiles/bifrost_dynamic.dir/roaring.c.o -lz cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbifrost.so.0 libbifrost.so.0 libbifrost.so make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' [ 90%] Built target bifrost_dynamic make -f src/CMakeFiles/Bifrost.dir/build.make src/CMakeFiles/Bifrost.dir/depend make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bifrost-1.3.1 /build/reproducible-path/bifrost-1.3.1/src /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src/CMakeFiles/Bifrost.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/Bifrost.dir/build.make src/CMakeFiles/Bifrost.dir/build make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/CMakeFiles/Bifrost.dir/Bifrost.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/Bifrost.dir/Bifrost.cpp.o -MF CMakeFiles/Bifrost.dir/Bifrost.cpp.o.d -o CMakeFiles/Bifrost.dir/Bifrost.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/Bifrost.cpp [ 96%] Linking CXX static library libbifrost.a cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bifrost_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bifrost_static.dir/link.txt --verbose=1 /usr/bin/ar qc libbifrost.a CMakeFiles/bifrost_static.dir/Bifrost.cpp.o CMakeFiles/bifrost_static.dir/BitContainer.cpp.o CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o CMakeFiles/bifrost_static.dir/ColorSet.cpp.o CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o CMakeFiles/bifrost_static.dir/Kmer.cpp.o CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o CMakeFiles/bifrost_static.dir/roaring.c.o /usr/bin/ranlib libbifrost.a make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' [ 96%] Built target bifrost_static [100%] Linking CXX executable Bifrost cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bifrost.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/Bifrost.dir/link.d CMakeFiles/Bifrost.dir/Bifrost.cpp.o -o Bifrost -Wl,-rpath,/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src: libbifrost.so.0 -lz make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' [100%] Built target Bifrost make[2]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/bifrost-1.3.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bifrost-1.3.1 -B/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/bin/Bifrost -- Set non-toolchain portion of runtime path of "/build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/bin/Bifrost" to "" -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/lib/libbifrost.so.0 -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/lib/libbifrost.so -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/lib/libbifrost.a -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/BitContainer.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/BlockedBloomFilter.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/ColorSet.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/ColoredCDBG.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/ColoredCDBG.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/Common.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/CompactedDBG.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/CompactedDBG.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/CompressedCoverage.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/CompressedSequence.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/DataAccessor.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/DataAccessor.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/DataManager.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/DataStorage.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/DataStorage.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/FASTX_Parser.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/File_Parser.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/GFA_Parser.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/IO.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/Kmer.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/KmerCovIndex.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/KmerCovIndex.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/KmerHashTable.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/KmerIterator.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/KmerStream.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/Lock.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/MinimizerIndex.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/NeighborIterator.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/NeighborIterator.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/RepHash.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/Search.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/StreamCounter.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/TinyBitmap.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/TinyVector.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/Unitig.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/UnitigIterator.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/UnitigIterator.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/UnitigMap.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/UnitigMap.tcc -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/fastmod.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/getRSS.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/kseq.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/libpopcnt.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/minHashIterator.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/roaring.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/roaring.hh -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/rw_spin_lock.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/strict_fstream.hpp -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/wyhash.h -- Installing: /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/include/bifrost/zstr.hpp make[1]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.1' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbifrost-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbifrost0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/libbifrost.a debian/libbifrost-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/libbifrost.la debian/libbifrost-dev/usr/lib/x86_64-linux-gnu || true mv debian/tmp/usr/lib/libbifrost.so debian/libbifrost-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/bifrost-1.3.1/debian/tmp/usr/lib/libbifrost.so.0 debian/libbifrost0/usr/lib/x86_64-linux-gnu PKGDEV=libbifrost-dev PKGSHL=libbifrost0 install -d -m 755 debian/libbifrost-dev/usr/include mv debian/tmp/usr/include/bifrost debian/libbifrost-dev/usr/include mv: cannot stat 'debian/tmp/usr/lib/libbifrost.la': No such file or directory make[1]: Leaving directory '/build/reproducible-path/bifrost-1.3.1' dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libbifrost-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libbifrost-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'bifrost-dbgsym' in '../bifrost-dbgsym_1.3.1-1_amd64.deb'. dpkg-deb: building package 'bifrost' in '../bifrost_1.3.1-1_amd64.deb'. dpkg-deb: building package 'libbifrost0-dbgsym' in '../libbifrost0-dbgsym_1.3.1-1_amd64.deb'. dpkg-deb: building package 'libbifrost0' in '../libbifrost0_1.3.1-1_amd64.deb'. dpkg-deb: building package 'libbifrost-dev' in '../libbifrost-dev_1.3.1-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../bifrost_1.3.1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../bifrost_1.3.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2760277 and its subdirectories I: Current time: Thu Apr 9 10:23:11 -12 2026 I: pbuilder-time-stamp: 1775773391 Fri Mar 7 16:00:13 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri Mar 7 16:00:13 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri Mar 7 16:04:32 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri Mar 7 16:04:33 UTC 2025 I: bifrost_1.3.1-1_amd64.changes: Format: 1.8 Date: Fri, 05 Jan 2024 09:14:39 +0100 Source: bifrost Binary: bifrost bifrost-dbgsym libbifrost-dev libbifrost0 libbifrost0-dbgsym Architecture: amd64 Version: 1.3.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: bifrost - parallel construction, indexing and querying of de Bruijn graphs libbifrost-dev - static library and header files for libbifrost libbifrost0 - library for parallel construction, indexing and querying of de Br Changes: bifrost (1.3.1-1) unstable; urgency=medium . * Source-only upload. * New upstream version * Remove trailing whitespace in debian/copyright (routine-update) Checksums-Sha1: d06daddba69f8e99d534237c6da5d9004d7ce523 2915800 bifrost-dbgsym_1.3.1-1_amd64.deb 4912ceab9e919d07cdad2e275e28c0ef77014639 7045 bifrost_1.3.1-1_amd64.buildinfo df5db916b66e105d870e31fff98bceef64de317c 530264 bifrost_1.3.1-1_amd64.deb 5706275082c3bc17d82341c196de49bd153124f8 624216 libbifrost-dev_1.3.1-1_amd64.deb cc10ccff2c71fc9c493018bfe4de4cfaa8a11262 3961268 libbifrost0-dbgsym_1.3.1-1_amd64.deb a17d585b2e31821dc8b6911da712fcf543f90705 445376 libbifrost0_1.3.1-1_amd64.deb Checksums-Sha256: 5d80fa5cbc8c3056f7dd3b38466428254bac41c2766d952a4c12ca030a319ab8 2915800 bifrost-dbgsym_1.3.1-1_amd64.deb a1587b6d42b37ad1220efc55274bc9260c5f005be323a867ce836ed260205f74 7045 bifrost_1.3.1-1_amd64.buildinfo 11cb11c6ddfb3f17c7f9ebbd1daf7f46f50f78281b5b00374e7daf4d9fa8f0f2 530264 bifrost_1.3.1-1_amd64.deb ef26047f14af3bf113e03fcdd1c6383a9e4ed8e7da8446109c42a1faed248590 624216 libbifrost-dev_1.3.1-1_amd64.deb 7fd879a6dfbb3c7079c1fa9b642f45420fa8a3e9e7b5d4f1ab6cbe575781440b 3961268 libbifrost0-dbgsym_1.3.1-1_amd64.deb 828d2c1a86796783c9cf37e124e33e8ef944c95d9536bd468e2bd955d10bd54f 445376 libbifrost0_1.3.1-1_amd64.deb Files: 997b208db90be06506fdf91a65b32c64 2915800 debug optional bifrost-dbgsym_1.3.1-1_amd64.deb 4a445b168d1c6ae8602de4c4a1f54414 7045 python optional bifrost_1.3.1-1_amd64.buildinfo ff33ce6132a722016260f811d6dd985d 530264 python optional bifrost_1.3.1-1_amd64.deb e3d1c6994781ed55e8789d7b0519fa37 624216 libdevel optional libbifrost-dev_1.3.1-1_amd64.deb 36a7398df90e26d044dd6e49e208c55f 3961268 debug optional libbifrost0-dbgsym_1.3.1-1_amd64.deb 4bb80a4bab2d873c6bad7d20ecdc8d7c 445376 libs optional libbifrost0_1.3.1-1_amd64.deb Fri Mar 7 16:04:34 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_12-48447.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.hrgiN0wD/bifrost_1.3.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.hrgiN0wD/bifrost_1.3.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.hrgiN0wD/bifrost_1.3.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.hrgiN0wD/b1/bifrost_1.3.1-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.hrgiN0wD/b2/bifrost_1.3.1-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 226ms CPU time consumed: 227ms Fri Mar 7 16:04:34 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Fri Mar 7 16:04:34 UTC 2025 I: bifrost from trixie built successfully and reproducibly on amd64. Fri Mar 7 16:04:35 UTC 2025 I: Submitting .buildinfo files to external archives: Fri Mar 7 16:04:35 UTC 2025 I: Submitting 8.0K b1/bifrost_1.3.1-1_amd64.buildinfo.asc Fri Mar 7 16:04:52 UTC 2025 I: Submitting 8.0K b2/bifrost_1.3.1-1_amd64.buildinfo.asc Fri Mar 7 16:05:11 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Mar 7 16:05:11 UTC 2025 I: Done submitting .buildinfo files. Fri Mar 7 16:05:11 UTC 2025 I: Removing signed bifrost_1.3.1-1_amd64.buildinfo.asc files: removed './b1/bifrost_1.3.1-1_amd64.buildinfo.asc' removed './b2/bifrost_1.3.1-1_amd64.buildinfo.asc'