Sat Aug 2 17:31:39 UTC 2025 I: starting to build btllib/trixie/amd64 on jenkins on '2025-08-02 17:31' Sat Aug 2 17:31:39 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_4/63629/console.log Sat Aug 2 17:31:39 UTC 2025 I: Downloading source for trixie/btllib=1.7.5+dfsg-2 --2025-08-02 17:31:39-- http://deb.debian.org/debian/pool/main/b/btllib/btllib_1.7.5%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2150 (2.1K) [text/prs.lines.tag] Saving to: ‘btllib_1.7.5+dfsg-2.dsc’ 0K .. 100% 215M=0s 2025-08-02 17:31:39 (215 MB/s) - ‘btllib_1.7.5+dfsg-2.dsc’ saved [2150/2150] Sat Aug 2 17:31:39 UTC 2025 I: btllib_1.7.5+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: btllib Binary: libbtllib-dev, btllib-tools Architecture: any Version: 1.7.5+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/bcgsc/btllib Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/btllib Vcs-Git: https://salsa.debian.org/med-team/btllib.git Testsuite: autopkgtest Testsuite-Triggers: g++ Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-exec, meson, ninja-build, libcpptoml-dev, libsdsl-dev, libargparse-dev, samtools Package-List: btllib-tools deb science optional arch=any libbtllib-dev deb libdevel optional arch=any Checksums-Sha1: db6b910ebead27bbd49cb215f3e3792b26b5381b 252108 btllib_1.7.5+dfsg.orig.tar.xz 793db4b17b31265377f9d6832250b8d4564bc573 4664 btllib_1.7.5+dfsg-2.debian.tar.xz Checksums-Sha256: af5381c1a310ef3ade771be2e28c22fe822976d73d1154c83a8f96827c65cbbd 252108 btllib_1.7.5+dfsg.orig.tar.xz 051d02bcaf22f286d7517b56714c57c2d89b978c438f9e75b4ece232149b26fd 4664 btllib_1.7.5+dfsg-2.debian.tar.xz Files: 25fe130dda560d85551b420e459e8ae9 252108 btllib_1.7.5+dfsg.orig.tar.xz 55b04fdeeb5a31de571c2cc4ff526e71 4664 btllib_1.7.5+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmf2ZbUACgkQPCZ2P2xn 5uLfQw//U339t78n6sH4+DPSCifb2sm3pomSSZwZVSEVv+miqnuPFafslloQ5OC8 /hKWGil6PIaJimnCy5Y+CFdlolu9IJrbxFtUXL0WuUIWl0iLZl9rRLvQE0hQTDZA ZIYui/iVdW8q0ylo9k7tEoWd8ZDTKmRHfi3ayl7WoPlDbLyoqDUY7E/0rxKzNTWt XoSRziSagA6un5CO1HQ0RzGri7ddmAJyIvixeyk3B5fgavofd55tnwW9VQyCwDk1 FP0p1+ux2dfAFng0WkDr4kWDty49j3IISYNkNCc7ltJzSlfnpradEKSaNqIjEr+i oxIA0AnBCusrJNNfDZLMPFMM4vLjxN8KxSHhiirJSV6NOX6Vp//xD/zhL7LapAXH 2kmLRNMU1a0E0jSjJ1/iI//n3xefcVWIVMSVabUmFksj713/ZlmPuff19mP1KDxW ltxvgwKJWsk+pPpIAerhYEnEic483EbCU+e4CREaMGN4dHrZXu6P98M74smlDDeG b0qkHO1Rs23DlHgO0SwfYZlFHb1/c76JGwqAwmTya5a1BjIWBSuQlfs9IwznvPfn crSSxXBORGuJctjZ1/jwGe9xFJx6rMGfHiMmGGOZiR8n5hvDwThwYK5F+PGcM9u+ 6paHQMcabraYAaN1RGUrElH7qk2pmoh6ev2a0D7OYWL2gs471YA= =Rjio -----END PGP SIGNATURE----- Sat Aug 2 17:31:39 UTC 2025 I: Checking whether the package is not for us Sat Aug 2 17:31:39 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sat Aug 2 17:31:39 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sat Aug 2 17:33:35 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Sep 4 11:54:40 -12 2026 I: pbuilder-time-stamp: 1788566080 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [btllib_1.7.5+dfsg-2.dsc] I: copying [./btllib_1.7.5+dfsg.orig.tar.xz] I: copying [./btllib_1.7.5+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./btllib_1.7.5+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting btllib in btllib-1.7.5+dfsg dpkg-source: info: unpacking btllib_1.7.5+dfsg.orig.tar.xz dpkg-source: info: unpacking btllib_1.7.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying find_object_files_at_right_loc.patch dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying python3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3033572/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1310f059a8524747a03fb1acc545ae48' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3033572' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WxkccgpT/pbuilderrc_ifYE --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WxkccgpT/b1 --logfile b1/build.log btllib_1.7.5+dfsg-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3033572/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-exec, meson, ninja-build, libcpptoml-dev, libsdsl-dev, libargparse-dev, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19851 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on ninja-build; however: Package ninja-build is not installed. pbuilder-satisfydepends-dummy depends on libcpptoml-dev; however: Package libcpptoml-dev is not installed. pbuilder-satisfydepends-dummy depends on libsdsl-dev; however: Package libsdsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libargparse-dev; however: Package libargparse-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libargparse-dev{a} libbrotli1{a} libcom-err2{a} libcpptoml-dev{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjs-d3{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsdsl-dev{a} libsdsl3{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 26.5 MB of archives. After unpacking 101 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 architecture-properties amd64 0.2.6 [2336 B] Get: 26 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 37 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dh-exec amd64 0.30 [25.6 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libargparse-dev amd64 3.2-1 [20.2 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libcpptoml-dev all 0.1.1-3 [180 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 57 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.14.1-2 [384 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libdivsufsort3 amd64 2.0.1-6+b1 [45.9 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libdivsufsort-dev amd64 2.0.1-6+b1 [19.1 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libsdsl3 amd64 2.1.1+dfsg-5 [214 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libsdsl-dev amd64 2.1.1+dfsg-5 [451 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 ninja-build amd64 1.12.1-1 [142 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 86 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 meson all 1.7.0-1 [639 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 samtools amd64 1.21-1 [667 kB] Fetched 26.5 MB in 0s (55.8 MB/s) Preconfiguring packages ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/btllib-1.7.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../btllib_1.7.5+dfsg-2_source.changes dpkg-buildpackage: info: source package btllib dpkg-buildpackage: info: source version 1.7.5+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Dpython.bytecompile=-1 The Meson build system Version: 1.7.0 Source dir: /build/reproducible-path/btllib-1.7.5+dfsg Build dir: /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu Build type: native build Project name: btllib Project version: 1.7.5 C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Debian 14.2.0-19) 14.2.0") C++ linker for the host machine: c++ ld.bfd 2.44 Host machine cpu family: x86_64 Host machine cpu: x86_64 Configuring config.hpp using configuration Run-time dependency threads found: YES Run-time dependency OpenMP found: YES 4.5 Program samtools found: YES (/usr/bin/samtools) Program gzip found: YES (/usr/bin/gzip) Program xz found: YES (/usr/bin/xz) Program bzip2 found: YES (/usr/bin/bzip2) Program tar found: YES (/usr/bin/tar) Program gcovr found: NO Program swig found: NO Program doxygen found: NO WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in meson 2.0. See also: https://github.com/mesonbuild/meson/issues/9300 Program python3 found: YES (/usr/bin/python3) Program python3-config found: NO Message: python3-config not found, skipping Python wrappers. Build targets in project: 28 btllib 1.7.5 User defined options buildtype : plain libdir : lib/x86_64-linux-gnu localstatedir : /var prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja dh_auto_build cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j42 -v [1/57] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_fasta_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_fasta_module.cpp.o.d -o 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-I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_aahash.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_aahash.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_aahash.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/src/btllib/aahash.cpp [9/57] c++ -Itests/seq_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong 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-fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_sam_module.cpp.o -MF tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_sam_module.cpp.o.d -o tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_sam_module.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/tests/seq_reader_sam_module.cpp [18/57] c++ -Itests/seq_reader_fasta_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 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-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_data_stream.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_data_stream.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_data_stream.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/src/btllib/data_stream.cpp [20/57] c++ -Itests/seq_reader_multiline_fastq_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ 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-Itests/seq_reader_fastq_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_fastq_module.cpp.o -MF tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_fastq_module.cpp.o.d -o tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/tests/seq_reader_fastq_module.cpp [26/57] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 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tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_counting_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/tests/counting_bloom_filter.cpp [30/57] c++ -Irecipes/indexlr.p -Irecipes -I../recipes -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ recipes/indexlr.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_indexlr.cpp.o -MF recipes/indexlr.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_indexlr.cpp.o.d -o recipes/indexlr.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_indexlr.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/recipes/indexlr.cpp [31/57] c++ -Itests/randseq_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/randseq_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_randseq.cpp.o -MF tests/randseq_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_randseq.cpp.o.d -o tests/randseq_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_randseq.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/tests/randseq.cpp [32/57] c++ -Itests/indexlr_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/indexlr_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_indexlr.cpp.o -MF tests/indexlr_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_indexlr.cpp.o.d -o tests/indexlr_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_indexlr.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/tests/indexlr.cpp [33/57] c++ -Irecipes/randseq.p -Irecipes -I../recipes -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ recipes/randseq.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_randseq.cpp.o -MF recipes/randseq.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_randseq.cpp.o.d -o recipes/randseq.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_randseq.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/recipes/randseq.cpp [34/57] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_bloom_filter.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_bloom_filter.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/src/btllib/bloom_filter.cpp [35/57] rm -f libbtllib.a && gcc-ar csrD libbtllib.a libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_randseq.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_sam_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_writer.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_status.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_fastq_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_fasta_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_process_pipeline.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_data_stream.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_cstring.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_aahash.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_util.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.7.5+dfsg_src_btllib_bloom_filter.cpp.o [36/57] c++ -o tests/seq_test tests/seq_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [37/57] c++ -o tests/cstring_test tests/cstring_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_cstring.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [38/57] c++ -o tests/util_test tests/util_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_util.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [39/57] c++ -o tests/aahash_test tests/aahash_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_aahash.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [40/57] c++ -o tests/nthash_test tests/nthash_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_nthash.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [41/57] c++ -o tests/data_stream_test tests/data_stream_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_data_stream.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [42/57] c++ -o tests/randseq_test tests/randseq_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_randseq.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [43/57] c++ -o tests/seq_reader_multiline_fasta_module_test tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [44/57] c++ -o tests/seq_reader_sam_module_test tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_sam_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [45/57] c++ -o tests/seq_reader_multiline_fastq_module_test tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [46/57] c++ -o tests/seq_reader_fasta_module_test tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_fasta_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [47/57] c++ -o tests/seq_writer_test tests/seq_writer_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_writer.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [48/57] c++ -o recipes/randseq recipes/randseq.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_randseq.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [49/57] c++ -o tests/bloom_filter_test tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [50/57] c++ -o tests/counting_bloom_filter_test tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_counting_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [51/57] c++ -o tests/seq_reader_fastq_module_test tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_seq_reader_fastq_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [52/57] c++ -o recipes/indexlr recipes/indexlr.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_indexlr.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [53/57] c++ -o tests/indexlr_test tests/indexlr_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_indexlr.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [54/57] c++ -Itests/mi_bloom_filter_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/mi_bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_mi_bloom_filter.cpp.o -MF tests/mi_bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_mi_bloom_filter.cpp.o.d -o tests/mi_bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_mi_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/tests/mi_bloom_filter.cpp [55/57] c++ -o tests/mi_bloom_filter_test tests/mi_bloom_filter_test.p/_build_reproducible-path_btllib-1.7.5+dfsg_tests_mi_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [56/57] c++ -Irecipes/mi_bf_generate.p -Irecipes -I../recipes -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ recipes/mi_bf_generate.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_mi_bloom_filter.cpp.o -MF recipes/mi_bf_generate.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_mi_bloom_filter.cpp.o.d -o recipes/mi_bf_generate.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_mi_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.7.5+dfsg/recipes/mi_bloom_filter.cpp [57/57] c++ -o recipes/mi_bf_generate recipes/mi_bf_generate.p/_build_reproducible-path_btllib-1.7.5+dfsg_recipes_mi_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -lsdsl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp debian/rules execute_before_dh_auto_test make[1]: Entering directory '/build/reproducible-path/btllib-1.7.5+dfsg' cp -a tests/ obj-*/ make[1]: Leaving directory '/build/reproducible-path/btllib-1.7.5+dfsg' dh_auto_test cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=42 meson test --verbose ninja: Entering directory `/build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu' ninja: no work to do. 1/17 seq RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=42 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_test 2/17 randseq RUNNING >>> MALLOC_PERTURB_=123 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/randseq_test 3/17 seq_reader_sam_module RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 MALLOC_PERTURB_=46 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_reader_sam_module_test 4/17 counting_bloom_filter RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=195 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/counting_bloom_filter_test 5/17 seq_writer RUNNING >>> MALLOC_PERTURB_=240 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_writer_test 6/17 nthash RUNNING >>> MALLOC_PERTURB_=55 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/nthash_test 7/17 seq_reader_fastq_module RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 MALLOC_PERTURB_=64 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_reader_fastq_module_test 8/17 seq_reader_fasta_module RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 MALLOC_PERTURB_=126 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_reader_fasta_module_test 9/17 data_stream RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=25 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/data_stream_test 10/17 seq_reader_multiline_fastq_module RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=24 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_reader_multiline_fastq_module_test 11/17 seq_reader_multiline_fasta_module RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 MALLOC_PERTURB_=136 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/seq_reader_multiline_fasta_module_test 12/17 indexlr RUNNING >>> MALLOC_PERTURB_=220 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/indexlr_test 13/17 mi_bloom_filter RUNNING >>> MALLOC_PERTURB_=124 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/mi_bloom_filter_test 14/17 cstring RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=158 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/cstring_test 15/17 aahash RUNNING >>> MALLOC_PERTURB_=66 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/aahash_test 16/17 util RUNNING >>> ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=41 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/util_test 17/17 bloom_filter RUNNING >>> MALLOC_PERTURB_=155 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/tests/bloom_filter_test 1/17 seq OK 0.09s 14/17 cstring OK 0.04s 16/17 util OK 0.03s 2/17 randseq OK 0.09s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: ./tests/randseq.cpp: Testing DNA sequence generation ./tests/randseq.cpp: Testing RNA sequence generation ./tests/randseq.cpp: Testing random seed functionality ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 6/17 nthash OK 0.08s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: ./tests/nthash.cpp: Testing k-mer hash values ./tests/nthash.cpp: Testing k-mer rolling ./tests/nthash.cpp: Testing k-mer rolling vs. base hash values ./tests/nthash.cpp: Testing canonical hashing ./tests/nthash.cpp: Testing k-mer back rolling ./tests/nthash.cpp: Testing k-mer peeking ./tests/nthash.cpp: Testing skipping Ns ./tests/nthash.cpp: Testing base substitution ./tests/nthash.cpp: Testing RNA ./tests/nthash.cpp: Testing spaced seed hash values ./tests/nthash.cpp: Testing spaced seeds ./tests/nthash.cpp: Testing spaced seed back roll ./tests/nthash.cpp: Testing canonical hashing in spaced seeds ./tests/nthash.cpp: Testing copying SeedNtHash objects ./tests/nthash.cpp: Testing BlindSeedNtHash ./tests/nthash.cpp: Testing BlindSeedNtHash roll back ./tests/nthash.cpp: Testing BlindSeedNtHash copy constructor ./tests/nthash.cpp: Testing k-mer vs. full-care spaced seed hashing ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 15/17 aahash OK 0.04s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: ./tests/aahash.cpp: Testing Level 1 hashing ./tests/aahash.cpp: Testing Level 2 hashing ./tests/aahash.cpp: Testing Level 3 hashing ./tests/aahash.cpp: Testing Test seed parse ./tests/aahash.cpp: Testing multi-level hashing ./tests/aahash.cpp: Testing Nonequivalence ./tests/aahash.cpp: Testing Level 2 equivalence ./tests/aahash.cpp: Testing Level 3 equivalence ./tests/aahash.cpp: Testing Mutli-level equivalence ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 4/17 counting_bloom_filter OK 0.09s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Testing CountingBloomFilter Testing KmerCountingBloomFilter Testing KmerCountingBloomfilter with multiple threads False positives = 0 Seqs with more than 1 presence = 92 Testing CBF element deletion Testing CBF element initialization ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 8/17 seq_reader_fasta_module OK 0.09s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test small FASTA Iteration 2 Test small FASTA Iteration 3 Test small FASTA Iteration 1 Test small FAA Iteration 2 Test small FAA Iteration 3 Test small FAA ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 9/17 data_stream OK 0.11s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Test .gz write Test .gz read Test .xz write Test .xz read ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 17/17 bloom_filter OK 0.08s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Testing BloomFilter Testing KmerBloomFilter Testing SeedBloomFilter Testing KmerBloomFilter with multiple threads False positives = 0 ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 12/17 indexlr OK 0.13s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Testing on empty file [2026-09-04 11:56:23][WARNING] ./tests/empty.fa is empty. Testing without Bloom filters Testing quality filtering Testing with Bloom filters ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 11/17 seq_reader_multiline_fasta_module OK 0.16s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test multiline FASTA Test random multiline FASTA file ZVWAANIUGGIEFSUPFTVWMBEFMOLLZTIGPWGABGMUZHUBBESQZIVDOALDYBNAYZPC Iteration 2 Test multiline FASTA Test random multiline FASTA file XYLUXCFFYBQMSUXWVXFMTFVGCKMQPOGDTBANACFJFRDGCQGTZWTGDIAEDHPIBKSP Iteration 3 Test multiline FASTA Test random multiline FASTA file AACYQCHUZYACNOBSGAMEWUHGSRPLNBYDTQVGHYIAIQGKPFQUWIOSZTIPWMPRZSEB Iteration 1 Test multiline FAA Iteration 2 Test multiline FAA Iteration 3 Test multiline FAA ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 3/17 seq_reader_sam_module OK 0.23s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test small SAM [2026-09-04 11:56:23][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 2 reads Test larger SAM file [2026-09-04 11:56:23][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 75 reads Iteration 2 Test small SAM [2026-09-04 11:56:23][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 2 reads Test larger SAM file [2026-09-04 11:56:24][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 75 reads Iteration 3 Test small SAM [2026-09-04 11:56:24][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 2 reads Test larger SAM file [2026-09-04 11:56:24][INFO]  samtools 1.21 Using htslib 1.21 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 75 reads ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 10/17 seq_reader_multiline_fastq_module OK 0.21s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test multiline FASTQ Test random multiline FASTQ file IJLRBUPARURWVWXAFGTDNQORCKIXCUPEAMHLQRZCLIAVEJMYVFAMMXSYJERFWOEH Iteration 2 Test multiline FASTQ Test random multiline FASTQ file SLLWNZBSSIXDTVKGVWANDLERQKVWFZQHBWOFHDYXGFVJHJDLDPAUTEKWGKLMBZRT Iteration 3 Test multiline FASTQ Test random multiline FASTQ file QEQCAIWMEVSPJWAVWSQZKIXIFOFQQOTDIUWNDYRRDJIMCEPGTPZNXNIADXKLGEFP ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 13/17 mi_bloom_filter OK 0.22s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Testing multi-indexed BloomFilter multi-indexed BloomFilter ID count test Testing ID counting Testing multi-indexed BloomFilter random sampling Testing multi-indexed BloomFilter saving. Testing multi-indexed BloomFilter reading. [2026-09-04 11:56:24][INFO] MIBloomFilter: Bit vector size: 268435456 Popcount: 986 Testing multi-indexed BloomFilter saturation ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 7/17 seq_reader_fastq_module OK 0.38s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test small FASTA and FASTQ simultaneously Test larger randomly generated FASTQ file Test larger randomly generated FASTQ file in parallel Test larger randomly generated FASTQ file in parallel (different syntax) Test larger randomly generated FASTQ file with read_block Iteration 2 Test small FASTA and FASTQ simultaneously Test larger randomly generated FASTQ file Test larger randomly generated FASTQ file in parallel Test larger randomly generated FASTQ file in parallel (different syntax) Test larger randomly generated FASTQ file with read_block Iteration 3 Test small FASTA and FASTQ simultaneously Test larger randomly generated FASTQ file Test larger randomly generated FASTQ file in parallel Test larger randomly generated FASTQ file in parallel (different syntax) Test larger randomly generated FASTQ file with read_block ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― 5/17 seq_writer OK 1.96s ――――――――――――――――――――――――――――――――――――― ✀ ――――――――――――――――――――――――――――――――――――― stderr: Iteration 1 Test FASTA Test FASTA amino acid Test FASTQ Test random file Test random file in parallel Iteration 2 Test FASTA Test FASTA amino acid Test FASTQ Test random file Test random file in parallel Iteration 3 Test FASTA Test FASTA amino acid Test FASTQ Test random file Test random file in parallel ―――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――――― Ok: 17 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /build/reproducible-path/btllib-1.7.5+dfsg/obj-x86_64-linux-gnu/meson-logs/testlog.txt create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && DESTDIR=/build/reproducible-path/btllib-1.7.5\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install [0/1] Installing files Installing libbtllib.a to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/lib Installing recipes/indexlr to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/bin Installing recipes/randseq to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/bin Installing recipes/mi_bf_generate to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/bin Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/randseq.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/indexlr.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/graph.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/aahash.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/data_stream.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_reader_multiline_fasta_module.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/order_queue.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_reader_fastq_module.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_reader_fasta_module.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_writer.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/hashing_internals.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/util.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/mi_bloom_filter.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/cstring.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/nthash.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/counting_bloom_filter-inl.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/status.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/process_pipeline.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/nthash_kmer.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_reader.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/bloom_filter.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_reader_sam_module.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/seq_reader_multiline_fastq_module.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/counting_bloom_filter.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/mi_bloom_filter-inl.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Installing /build/reproducible-path/btllib-1.7.5+dfsg/include/btllib/nthash_seed.hpp to /build/reproducible-path/btllib-1.7.5+dfsg/debian/tmp/usr/include/btllib Running custom install script '/build/reproducible-path/btllib-1.7.5+dfsg/scripts/install-cpptoml' Running custom install script '/build/reproducible-path/btllib-1.7.5+dfsg/scripts/install-sdsl-lite' dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libbtllib-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libbtllib-dev' in '../libbtllib-dev_1.7.5+dfsg-2_amd64.deb'. dpkg-deb: building package 'btllib-tools' in '../btllib-tools_1.7.5+dfsg-2_amd64.deb'. dpkg-deb: building package 'btllib-tools-dbgsym' in '../btllib-tools-dbgsym_1.7.5+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../btllib_1.7.5+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../btllib_1.7.5+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3033572 and its subdirectories I: Current time: Fri Sep 4 11:56:34 -12 2026 I: pbuilder-time-stamp: 1788566194 Sat Aug 2 17:33:35 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Sat Aug 2 17:33:35 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Sat Aug 2 17:34:54 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Sat Aug 2 17:34:55 UTC 2025 I: btllib_1.7.5+dfsg-2_amd64.changes: Format: 1.8 Date: Wed, 09 Apr 2025 14:18:37 +0200 Source: btllib Binary: btllib-tools btllib-tools-dbgsym libbtllib-dev Architecture: amd64 Version: 1.7.5+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: btllib-tools - Bioinformatics Technology Lab common code library tools libbtllib-dev - Bioinformatics Technology Lab common code library Changes: btllib (1.7.5+dfsg-2) unstable; urgency=medium . * d/control: drop unneeded build-dep on libomp-dev; gcc→libgcc-N-dev provides omp.h Checksums-Sha1: 96a0a4f649c0097cd59aaac74df4cfff0b578a11 5126892 btllib-tools-dbgsym_1.7.5+dfsg-2_amd64.deb c76ed6a597619fbdc1561df20c4ab8b37212b29f 281772 btllib-tools_1.7.5+dfsg-2_amd64.deb 4e732f4487badfcc492c4622544f04c4015b1b4c 7236 btllib_1.7.5+dfsg-2_amd64.buildinfo 068ff78b6979216bf445e6c08b9f6e0034b64e30 218564 libbtllib-dev_1.7.5+dfsg-2_amd64.deb Checksums-Sha256: b3cfb62acff0d3b37ed78a5edc7f3bd8c25d9d1859b7ee36abe0426a12cf480f 5126892 btllib-tools-dbgsym_1.7.5+dfsg-2_amd64.deb 21191cda52e8d5e056039fbbd86915a48aac30bd02d64378fcaea25ee2a577ac 281772 btllib-tools_1.7.5+dfsg-2_amd64.deb bc58e9d1d671bf7a9658b207b709e79d16ae61481edaf58b3234d8a465ce4b9e 7236 btllib_1.7.5+dfsg-2_amd64.buildinfo 5e4a867cd57286dbad30e12bfebe569a70c14408c98ebdcf7e8d0e7e82731aff 218564 libbtllib-dev_1.7.5+dfsg-2_amd64.deb Files: 8a33fbc3835c845e38d08c407fa34339 5126892 debug optional btllib-tools-dbgsym_1.7.5+dfsg-2_amd64.deb 8a8f00d91c488855eedc1086a1bdcc3b 281772 science optional btllib-tools_1.7.5+dfsg-2_amd64.deb 913a66116a9b5e6725fbc735189f5efe 7236 science optional btllib_1.7.5+dfsg-2_amd64.buildinfo 7a7c4de95d04275b1c6ec07d04664c1f 218564 libdevel optional libbtllib-dev_1.7.5+dfsg-2_amd64.deb Sat Aug 2 17:34:56 UTC 2025 I: diffoscope 303 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_4-63629.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.WxkccgpT/btllib_1.7.5+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.WxkccgpT/btllib_1.7.5+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.WxkccgpT/btllib_1.7.5+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.WxkccgpT/b1/btllib_1.7.5+dfsg-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.WxkccgpT/b2/btllib_1.7.5+dfsg-2_amd64.changes ## close_archive (total time: 0.000s) 0.000s 30 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.deb.DebContainer 0.000s 18 calls diffoscope.comparators.tar.TarContainer 0.000s 12 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.ar.ArContainer ## command (total time: 140.503s) 68.876s 3500 calls readelf 63.448s 376 calls diff 5.646s 574 calls objdump 1.277s 6 calls objcopy 1.010s 30 calls xz 0.179s 77 calls strings 0.052s 11 calls nm 0.006s 5 calls cmp 0.006s 5 calls cmp (external) 0.002s 43 calls cmp (internal) ## compare_files (cumulative) (total time: 716.144s) 131.727s 1 call abc.DotChangesFile 131.711s 3 calls abc.DebFile 131.654s 6 calls abc.XzFile 131.266s 3 calls abc.DebDataTarFile 130.615s 7 calls abc.ElfFile 56.721s 30 calls diffoscope.comparators.elf.ElfCodeSection 1.488s 116 calls diffoscope.comparators.elf.ElfSection 0.591s 10 calls diffoscope.comparators.elf.ElfStringSection 0.263s 1 call abc.ArFile 0.067s 3 calls abc.TarFile 0.019s 3 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.012s 3 calls abc.Md5sumsFile 0.009s 1 call abc.TextFile ## container_extract (total time: 1.129s) 1.011s 30 calls diffoscope.comparators.xz.XzContainer 0.070s 84 calls diffoscope.comparators.deb.DebTarContainer 0.031s 36 calls diffoscope.comparators.deb.DebContainer 0.011s 24 calls diffoscope.comparators.tar.TarContainer 0.007s 32 calls diffoscope.comparators.ar.ArContainer ## diff (total time: 3.065s) 3.065s 2481 calls linediff ## has_same_content_as (total time: 0.012s) 0.007s 23 calls abc.ElfFile 0.002s 3 calls abc.DebDataTarFile 0.001s 6 calls abc.TextFile 0.000s 116 calls diffoscope.comparators.elf.ElfSection 0.000s 6 calls abc.Md5sumsFile 0.000s 6 calls abc.XzFile 0.000s 3 calls abc.TarFile 0.000s 30 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 1 call abc.DotChangesFile 0.000s 3 calls abc.DebFile 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 1 call abc.ArFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 10 calls diffoscope.comparators.elf.ElfStringSection 0.000s 3 calls diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 175.710s) 175.710s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 30 calls diffoscope.comparators.xz.XzContainer 0.000s 18 calls diffoscope.comparators.tar.TarContainer 0.000s 12 calls diffoscope.comparators.deb.DebContainer 0.000s 12 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.ar.ArContainer ## output (total time: 43.675s) 37.687s 1 call html 3.542s 1 call text 2.446s 1 call json ## recognizes (total time: 0.998s) 0.740s 1218 calls diffoscope.comparators.utils.archive.ArchiveMember 0.191s 4080 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.047s 12 calls diffoscope.comparators.binary.FilesystemFile 0.020s 324 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.413s) 0.413s 212 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 2min 55.926s CPU time consumed: 3min 21.550s Sat Aug 2 17:39:35 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sat Aug 2 17:39:35 UTC 2025 E: btllib failed to build reproducibly in trixie on amd64. Sat Aug 2 17:41:02 UTC 2025 I: Removing signed btllib_1.7.5+dfsg-2_amd64.buildinfo.asc files: removed './b1/btllib_1.7.5+dfsg-2_amd64.buildinfo.asc' removed './b2/btllib_1.7.5+dfsg-2_amd64.buildinfo.asc'