Wed Mar 5 13:25:46 UTC 2025 I: starting to build ctffind/trixie/amd64 on jenkins on '2025-03-05 13:25' Wed Mar 5 13:25:46 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_14/34356/console.log Wed Mar 5 13:25:46 UTC 2025 I: Downloading source for trixie/ctffind=4.1.14-3 --2025-03-05 13:25:46-- http://deb.debian.org/debian/pool/main/c/ctffind/ctffind_4.1.14-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1969 (1.9K) [text/prs.lines.tag] Saving to: ‘ctffind_4.1.14-3.dsc’ 0K . 100% 24.9M=0s 2025-03-05 13:25:46 (24.9 MB/s) - ‘ctffind_4.1.14-3.dsc’ saved [1969/1969] Wed Mar 5 13:25:46 UTC 2025 I: ctffind_4.1.14-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: ctffind Binary: ctffind Architecture: any Version: 4.1.14-3 Maintainer: Debian Med Packaging Team Uploaders: Alex Myczko Homepage: https://grigoriefflab.umassmed.edu/ctffind4 Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/ctffind Vcs-Git: https://salsa.debian.org/med-team/ctffind.git Build-Depends: debhelper-compat (= 13), libwxgtk3.2-dev, libfftw3-dev, libjpeg-dev, libtiff-dev Package-List: ctffind deb science optional arch=any Checksums-Sha1: 8d8a6db442d07cf255de16698f2fa3df8b0f39d0 666612 ctffind_4.1.14.orig.tar.gz ad88ae221e67ebafc0a7f2fbc207cb9720618e68 4048 ctffind_4.1.14-3.debian.tar.xz Checksums-Sha256: 5f3eee53267fd1897cc1748d2154f7352452e881bcffd07d049d39a3c3b373b5 666612 ctffind_4.1.14.orig.tar.gz 0352833ad3166e5f6af4ba6f289890be27012e3af0dfcd8717b4b1e0f0a3bb68 4048 ctffind_4.1.14-3.debian.tar.xz Files: 40b61d1a59159b9be1ff8f001bb1b79a 666612 ctffind_4.1.14.orig.tar.gz cb25e5e8eac6b57808dbf20019bff7fd 4048 ctffind_4.1.14-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEtgob82PcExn/Co6JEWhSvN91FcAFAmaYoswACgkQEWhSvN91 FcBFBxAAgEVBb6D/kQ9QKwC3j7v9bqDnHichlcEh5O3MIDb81NSGWvsfC9qq7n5i Os503jzYlgd7pELDlIqp9JqllvCKSBv32OuCjExX3/URK1DF69yyEc3gh1srjdbl GqVv0vkFcMqcykq9Tw+viySxg+7B8EuY3MKJsh3mYVJIQ8J1X9P4dogM6ObuHM7K bmIDpKqCYgKGkVBRnJ6TF1NDqgUF/Y2vpwAvi9BWt9kYst+QF3/zJqGRzTyf/5aT CfHtcRt73dmAqn94P0/q6H5ZKRXyw1NKegPoRrFHUwfOGAbMRWmMXdQN3DXM2KXr RTV79Em4XlJZvD2cwfaiG3030rL71no3Ub3XTOcOeDhQJ/WElDYSSIc2YsvE1fwF PlRD645a72qS2uDr2D2ETlsuFyN1DQcNQTANW2d0ERCv7oQUYN0q4qJhCAQ67Z0z Rwhw2hHUGdDluvXrrgDo3LvbZt/Ifn2QC7okb7bSVKuQcfwn+UAxk32dBEf2Mtvi npxXHbFiMvXgSVlwZPg37351gVS8S+dGUztQFZjRkCTtx7hFmxZubpbQVhizCoIB vV+tdU5Hqh351IMrTPZaMOBpd5Q7sNYsS5hEcqutYvNp0KwdWKyMx/+4b3grupd7 UIb3+KiNUYxEwL2/3eHS+DB6mCx/5Ua3fM6SDzlO6Ot3Ei3iCNk= =h0wx -----END PGP SIGNATURE----- Wed Mar 5 13:25:46 UTC 2025 I: Checking whether the package is not for us Wed Mar 5 13:25:47 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Wed Mar 5 13:25:47 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Wed Mar 5 13:27:05 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Apr 7 07:48:47 -12 2026 I: pbuilder-time-stamp: 1775591327 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ctffind_4.1.14-3.dsc] I: copying [./ctffind_4.1.14.orig.tar.gz] I: copying [./ctffind_4.1.14-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ctffind_4.1.14-3.dsc: unsupported subcommand dpkg-source: info: extracting ctffind in ctffind-4.1.14 dpkg-source: info: unpacking ctffind_4.1.14.orig.tar.gz dpkg-source: info: unpacking ctffind_4.1.14-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying src-core-matrix I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/739329/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='090913f203cf437e95154b5fd3c76afb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='739329' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.I4rQKrE5/pbuilderrc_7Z0m --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.I4rQKrE5/b1 --logfile b1/build.log ctffind_4.1.14-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/739329/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libwxgtk3.2-dev, libfftw3-dev, libjpeg-dev, libtiff-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19800 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libwxgtk3.2-dev; however: Package libwxgtk3.2-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libjpeg-dev; however: Package libjpeg-dev is not installed. pbuilder-satisfydepends-dummy depends on libtiff-dev; however: Package libtiff-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} libapparmor1{a} libarchive-zip-perl{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcups2t64{a} libcurl4t64{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libharfbuzz0b{a} libice6{a} libicu72{a} libidn2-0{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap2{a} liblerc-dev{a} liblerc4{a} libllvm19{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libnotify4{a} libopengl-dev{a} libopengl0{a} libp11-kit0{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpciaccess0{a} libpcre2-32-0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv-dev{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsystemd-shared{a} libtasn1-6{a} libthai-data{a} libthai0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtool{a} libuchardet0{a} libunistring5{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libwxbase3.2-1t64{a} libwxgtk-gl3.2-1t64{a} libwxgtk3.2-1t64{a} libwxgtk3.2-dev{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml2{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} mesa-libgallium{a} po-debconf{a} procps{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} wx-common{a} wx3.2-headers{a} x11-common{a} x11proto-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: at-spi2-core ca-certificates chrony curl krb5-locales libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data libgtk-3-bin libkmod2 libldap-common libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd psmisc publicsuffix systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs zip 0 packages upgraded, 213 newly installed, 0 to remove and 0 not upgraded. Need to get 118 MB of archives. After unpacking 497 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libsystemd-shared amd64 257.3-1 [2138 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libapparmor1 amd64 3.1.7-4 [42.0 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 systemd amd64 257.3-1 [3092 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 systemd-sysv amd64 257.3-1 [61.4 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libdbus-1-3 amd64 1.16.2-1 [177 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 dbus-bin amd64 1.16.2-1 [79.4 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 dbus-session-bus-common all 1.16.2-1 [51.6 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 dbus-daemon amd64 1.16.2-1 [158 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 dbus-system-bus-common all 1.16.2-1 [52.7 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 dbus amd64 1.16.2-1 [71.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpam-systemd amd64 257.3-1 [293 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [311 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.83.4-1 [1512 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.47-1 [282 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-2 [140 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 gtk-update-icon-cache amd64 4.17.5+ds-3 [51.5 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 hicolor-icon-theme all 0.18-2 [11.8 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 adwaita-icon-theme all 47.0-2 [463 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 at-spi2-common all 2.55.2-1 [170 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 dbus-user-session amd64 1.16.2-1 [51.5 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libdconf1 amd64 0.40.0-5 [41.8 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 dconf-service amd64 0.40.0-5 [32.4 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 dconf-gsettings-backend amd64 0.40.0-5 [28.6 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 59 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-2 [463 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libatk1.0-0t64 amd64 2.55.2-1 [51.4 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libatspi2.0-0t64 amd64 2.55.2-1 [77.0 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libatk-bridge2.0-0t64 amd64 2.55.2-1 [68.1 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libavahi-common-data amd64 0.8-16 [112 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libavahi-common3 amd64 0.8-16 [44.2 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libavahi-client3 amd64 0.8-16 [48.4 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libcairo-gobject2 amd64 1.18.2-2 [130 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libcloudproviders0 amd64 0.3.6-1+b1 [29.2 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libcolord2 amd64 1.4.7-1+b2 [140 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 103 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libcups2t64 amd64 2.4.10-2+b1 [251 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-3 [369 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libdeflate-dev amd64 1.23-1+b1 [56.0 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.124-1 [8180 B] Get: 118 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.124-1 [38.9 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.124-1 [22.4 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libdrm-intel1 amd64 2.4.124-1 [63.8 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libdrm-radeon1 amd64 2.4.124-1 [22.4 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libepoxy0 amd64 1.5.10-2 [193 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libfftw3-long3 amd64 3.3.10-2+b1 [347 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libfftw3-quad3 amd64 3.3.10-2+b1 [618 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libfftw3-bin amd64 3.3.10-2+b1 [51.3 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libfftw3-dev amd64 3.3.10-2+b1 [2118 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libwayland-server0 amd64 1.23.1-3 [34.4 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libglapi-mesa amd64 24.3.4-3 [38.5 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libllvm19 amd64 1:19.1.7-1+b1 [26.0 MB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [241 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libxshmfence1 amd64 1.3-1+b3 [8852 B] Get: 145 http://deb.debian.org/debian trixie/main amd64 mesa-libgallium amd64 24.3.4-3 [9492 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libgbm1 amd64 24.3.4-3 [43.7 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b4 [19.3 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libvulkan1 amd64 1.4.304.0-1 [129 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libgl1-mesa-dri amd64 24.3.4-3 [45.2 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libglx-mesa0 amd64 24.3.4-3 [143 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 libx11-dev amd64 2:1.8.10-2 [891 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libglx-dev amd64 1.7.0-1+b2 [15.8 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libgl-dev amd64 1.7.0-1+b2 [101 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libopengl0 amd64 1.7.0-1+b2 [30.9 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libglu1-mesa amd64 9.0.2-1.1+b3 [184 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 libopengl-dev amd64 1.7.0-1+b2 [5388 B] Get: 167 http://deb.debian.org/debian trixie/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1+b3 [223 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.56.1-1 [226 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [55.3 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [35.8 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libwayland-client0 amd64 1.23.1-3 [26.8 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libwayland-cursor0 amd64 1.23.1-3 [11.9 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libwayland-egl1 amd64 1.23.1-3 [5860 B] Get: 178 http://deb.debian.org/debian trixie/main amd64 libxcomposite1 amd64 1:0.4.6-1 [16.3 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libxfixes3 amd64 1:6.0.0-2+b4 [20.2 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libxcursor1 amd64 1:1.2.3-1 [39.7 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libxdamage1 amd64 1:1.1.6-1+b2 [15.5 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libxinerama1 amd64 2:1.1.4-3+b3 [16.0 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 xkb-data all 2.42-1 [790 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libxkbcommon0 amd64 1.7.0-2 [113 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libxrandr2 amd64 2:1.5.4-1+b3 [36.3 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libgtk-3-common all 3.24.48-4 [4873 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 libgtk-3-0t64 amd64 3.24.48-4 [2767 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24 [217 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libjbig-dev amd64 2.1-6.1+b2 [31.4 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3.1 [292 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3.1 [72.0 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 liblerc-dev amd64 4.0.0+ds-5 [183 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.6.4-1 [323 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 libnotify4 amd64 0.8.4-1 [26.3 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 libpcre2-32-0 amd64 10.45-1 [268 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 libsharpyuv-dev amd64 1.5.0-0.1 [120 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 libwebpdecoder3 amd64 1.5.0-0.1 [208 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 libwebp-dev amd64 1.5.0-0.1 [450 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 libtiffxx6 amd64 4.5.1+git230720-5 [149 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 libtiff-dev amd64 4.5.1+git230720-5 [463 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 libwxbase3.2-1t64 amd64 3.2.6+dfsg-2 [1041 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 libxtst6 amd64 2:1.2.5-1 [25.8 kB] Get: 209 http://deb.debian.org/debian trixie/main amd64 libwxgtk3.2-1t64 amd64 3.2.6+dfsg-2 [4695 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 libwxgtk-gl3.2-1t64 amd64 3.2.6+dfsg-2 [84.1 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 wx-common amd64 3.2.6+dfsg-2 [119 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 wx3.2-headers all 3.2.6+dfsg-2 [1127 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 libwxgtk3.2-dev amd64 3.2.6+dfsg-2 [80.4 kB] Fetched 118 MB in 5s (21.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19800 files and directories currently installed.) Preparing to unpack .../libsystemd-shared_257.3-1_amd64.deb ... Unpacking libsystemd-shared:amd64 (257.3-1) ... Selecting previously unselected package libapparmor1:amd64. Preparing to unpack .../libapparmor1_3.1.7-4_amd64.deb ... Unpacking libapparmor1:amd64 (3.1.7-4) ... Setting up libsystemd-shared:amd64 (257.3-1) ... Selecting previously unselected package systemd. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19813 files and directories currently installed.) Preparing to unpack .../systemd_257.3-1_amd64.deb ... Unpacking systemd (257.3-1) ... Setting up libapparmor1:amd64 (3.1.7-4) ... Setting up systemd (257.3-1) ... Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' -> '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' -> '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' -> '/usr/lib/systemd/system/systemd-pstore.service'. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20756 files and directories currently installed.) Preparing to unpack .../000-systemd-sysv_257.3-1_amd64.deb ... Unpacking systemd-sysv (257.3-1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../001-libdbus-1-3_1.16.2-1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.16.2-1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../002-dbus-bin_1.16.2-1_amd64.deb ... 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Not building database; man-db/auto-update is not 'true'. Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' -> '/usr/lib/systemd/system/man-db.timer'. Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libcolord2:amd64 (1.4.7-1+b2) ... Setting up libdconf1:amd64 (0.40.0-5) ... Setting up dbus-user-session (1.16.2-1) ... Setting up adwaita-icon-theme (47.0-2) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libnotify4:amd64 (0.8.4-1) ... Setting up libatspi2.0-0t64:amd64 (2.55.2-1) ... Setting up libcairo-gobject2:amd64 (1.18.2-2) ... Setting up libpangoft2-1.0-0:amd64 (1.56.1-1) ... Setting up libcups2t64:amd64 (2.4.10-2+b1) ... Setting up libpangocairo-1.0-0:amd64 (1.56.1-1) ... Setting up libatk-bridge2.0-0t64:amd64 (2.55.2-1) ... Setting up mesa-libgallium:amd64 (24.3.4-3) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ctffind-4.1.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ctffind_4.1.14-3_source.changes dpkg-buildpackage: info: source package ctffind dpkg-buildpackage: info: source version 4.1.14-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alex Myczko dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:15: warning: The macro 'AC_LIBTOOL_DLOPEN' is obsolete. configure.ac:15: You should run autoupdate. m4/ltoptions.m4:113: AC_LIBTOOL_DLOPEN is expanded from... configure.ac:15: the top level configure.ac:15: warning: AC_LIBTOOL_DLOPEN: Remove this warning and the call to _LT_SET_OPTION when you configure.ac:15: put the 'dlopen' option into LT_INIT's first parameter. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... m4/ltoptions.m4:113: AC_LIBTOOL_DLOPEN is expanded from... configure.ac:15: the top level configure.ac:16: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:16: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:16: the top level configure.ac:9: installing './compile' configure.ac:4: installing './missing' Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for icpc... no checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: static_link = false checking wxWidgets version... 3.2.6 checking for fftw3.h... yes checking for fftwf_malloc in -lmkl_intel_lp64... no checking for fftwf_malloc in -lfftw3f... yes configure: Using FFTW for Fourier transforms checking for TIFFOpen in -lwxtiff-3.0... no checking for library containing inflate... -lz checking for library containing jpeg_read_header... -ljpeg checking for library containing TIFFOpen... -ltiff checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/ctffind-4.1.14' g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o ctffind-image_trim.o `test -f 'image_trim.cpp' || echo './'`image_trim.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/programs/ctffind/ctffind-ctffind.o `test -f 'src/programs/ctffind/ctffind.cpp' || echo './'`src/programs/ctffind/ctffind.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-functions.o `test -f 'src/core/functions.cpp' || echo './'`src/core/functions.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 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-DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-randomnumbergenerator.o `test -f 'src/core/randomnumbergenerator.cpp' || echo './'`src/core/randomnumbergenerator.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE 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-I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-curve.o `test -f 'src/core/curve.cpp' || echo './'`src/core/curve.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-matrix.o `test -f 'src/core/matrix.cpp' || echo './'`src/core/matrix.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-symmetry_matrix.o `test -f 'src/core/symmetry_matrix.cpp' || echo './'`src/core/symmetry_matrix.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 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-DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-mrc_header.o `test -f 'src/core/mrc_header.cpp' || echo './'`src/core/mrc_header.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-mrc_file.o `test -f 'src/core/mrc_file.cpp' || echo './'`src/core/mrc_file.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-tiff_file.o `test -f 'src/core/tiff_file.cpp' || echo './'`src/core/tiff_file.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-dm_file.o `test -f 'src/core/dm_file.cpp' || echo './'`src/core/dm_file.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-image_file.o `test -f 'src/core/image_file.cpp' || echo './'`src/core/image_file.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-job_packager.o `test -f 'src/core/job_packager.cpp' || echo './'`src/core/job_packager.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-job_tracker.o `test -f 'src/core/job_tracker.cpp' || echo './'`src/core/job_tracker.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 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-DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-myapp.o `test -f 'src/core/myapp.cpp' || echo './'`src/core/myapp.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-empirical_distribution.o `test -f 'src/core/empirical_distribution.cpp' || echo './'`src/core/empirical_distribution.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-ctf.o `test -f 'src/core/ctf.cpp' || echo './'`src/core/ctf.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-numeric_text_file.o `test -f 'src/core/numeric_text_file.cpp' || echo './'`src/core/numeric_text_file.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-progressbar.o `test -f 'src/core/progressbar.cpp' || echo './'`src/core/progressbar.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-downhill_simplex.o `test -f 'src/core/downhill_simplex.cpp' || echo './'`src/core/downhill_simplex.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-brute_force_search.o `test -f 'src/core/brute_force_search.cpp' || echo './'`src/core/brute_force_search.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-va04.o `test -f 'src/core/va04.cpp' || echo './'`src/core/va04.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-conjugate_gradient.o `test -f 'src/core/conjugate_gradient.cpp' || echo './'`src/core/conjugate_gradient.cpp src/core/userinput.cpp:160:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 160 | wxPrintf(" Compiled : %s\n", __DATE__); | ^~~~~~~~ src/core/curve.cpp:1067:1: warning: "/*" within comment [-Wcomment] 1067 | /**************************************************************** src/core/brute_force_search.cpp:246: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 246 | #pragma omp parallel for default(none) num_threads(numThreads) shared( all_values, all_local_best_values, all_scores,numThreads,num_iterations_completed,my_progress_bar) private(current_iteration, current_values, current_values_for_local_minimization, i, accuracy_for_local_minimization) src/core/brute_force_search.cpp:257: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 257 | #pragma omp atomic src/core/va04.cpp: In function 'int va04a_(int*, float*, float*, int*, float (*)(void*, float*), void*, float*, int*, int*, int*, float*)': src/core/va04.cpp:74:33: warning: empty parentheses were disambiguated as a function declaration [-Wvexing-parse] 74 | int s_wsfe(cilist *), e_wsfe(); | ^~ src/core/va04.cpp:74:33: note: remove parentheses to default-initialize a variable 74 | int s_wsfe(cilist *), e_wsfe(); | ^~ | -- src/core/va04.cpp:74:33: note: or replace parentheses with braces to value-initialize a variable src/core/va04.cpp:100:19: warning: unused variable 'io___32' [-Wunused-variable] 100 | static cilist io___32 = { 0, 6, 0, fmt_19, 0 }; | ^~~~~~~ src/core/va04.cpp:101:19: warning: unused variable 'io___42' [-Wunused-variable] 101 | static cilist io___42 = { 0, 6, 0, fmt_52, 0 }; | ^~~~~~~ src/core/va04.cpp:102:19: warning: unused variable 'io___45' [-Wunused-variable] 102 | static cilist io___45 = { 0, 6, 0, fmt_80, 0 }; | ^~~~~~~ src/core/va04.cpp: At global scope: src/core/va04.cpp:21:12: warning: 'c__1' defined but not used [-Wunused-variable] 21 | static int c__1 = 1; | ^~~~ In file included from src/core/core_headers.h:80, from src/core/userinput.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/empirical_distribution.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/matrix.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/userinput.cpp: In member function 'void UserInput::Init(const char*, wxString)': src/core/userinput.cpp:157:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 157 | for (counter = 0; counter < strlen(program_name) / 2; counter++) wxPrintf(" "); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/userinput.cpp:159:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 159 | for (counter = 0; counter < strlen(program_name) / 2; counter++) wxPrintf(" "); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/userinput.cpp:161:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 161 | for (counter = 0; counter < strlen(program_name) / 2; counter++) wxPrintf(" "); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/image_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/curve.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/abstract_image_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/conjugate_gradient.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/tiff_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/programs/ctffind/../../core/core_headers.h:80, from src/programs/ctffind/ctffind.cpp:1: src/programs/ctffind/../../core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/programs/ctffind/../../core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/../../core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/programs/ctffind/../../core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/mrc_header.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual bool ImageFile::OpenFile(std::string, bool, bool)': src/core/image_file.cpp:58:158: warning: statement is a reference, not call, to function 'abort' [-Waddress] 58 | default: MyPrintWithDetails("Unsupported file type\n"); MyDebugAssertTrue(false,"Unsupported file type: %s\n",filename.GetFullPath().ToStdString()); abort; break; | ^~~~~ src/core/image_file.cpp:58:158: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual void ImageFile::ReadSlicesFromDisk(int, int, float*)': src/core/image_file.cpp:85:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 85 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:85:65: warning: statement has no effect [-Wunused-value] In file included from src/core/core_headers.h:80, from src/core/job_tracker.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual void ImageFile::WriteSlicesToDisk(int, int, float*)': src/core/image_file.cpp:101:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 101 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:101:65: warning: statement has no effect [-Wunused-value] src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnXSize()': src/core/image_file.cpp:113:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 113 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:113:65: warning: statement has no effect [-Wunused-value] src/core/curve.cpp: In member function 'float Curve::ReturnLinearInterpolationFromI(float)': src/core/curve.cpp:367:15: warning: unused variable 'distance' [-Wunused-variable] 367 | float distance; | ^~~~~~~~ src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnYSize()': src/core/image_file.cpp:124:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 124 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:124:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnZSize()': src/core/image_file.cpp:135:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 135 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:135:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnNumberOfSlices()': src/core/image_file.cpp:146:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 146 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:146:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual float ImageFile::ReturnPixelSize()': src/core/image_file.cpp:157:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 157 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:157:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual bool ImageFile::IsOpen()': src/core/image_file.cpp:168:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 168 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:168:65: warning: statement has no effect [-Wunused-value] src/core/conjugate_gradient.cpp: In member function 'float ConjugateGradient::Run()': src/core/conjugate_gradient.cpp:72:13: warning: variable 'va04_success' set but not used [-Wunused-but-set-variable] 72 | int va04_success = 0; | ^~~~~~~~~~~~ src/core/curve.cpp: In function 'void LS_POLY(float*, float*, int, int, float*, float*)': src/core/curve.cpp:1246:16: warning: variable 'dd' set but not used [-Wunused-but-set-variable] 1246 | double dd; | ^~ src/core/tiff_file.cpp: In member function 'bool TiffFile::ReadLogicalDimensionsFromDisk()': src/core/tiff_file.cpp:108:76: warning: comparison of integer expressions of different signedness: 'int' and 'uint32' {aka 'unsigned int'} [-Wsign-compare] 108 | if (current_x != original_x || logical_dimension_y != current_y) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ src/core/tiff_file.cpp: In member function 'virtual void TiffFile::ReadSlicesFromDisk(int, int, float*)': src/core/tiff_file.cpp:149:80: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 149 | for (unsigned int directory_counter = start_slice-1; directory_counter < end_slice; directory_counter ++ ) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/symmetry_matrix.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_tracker.cpp: In member function 'void JobTracker::MarkJobFinished()': src/core/job_tracker.cpp:62:14: warning: unused variable 'seconds_per_job_per_process_since_last_update' [-Wunused-variable] 62 | long seconds_per_job_per_process_since_last_update; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_tracker.cpp:63:14: warning: unused variable 'time_since_last_update' [-Wunused-variable] 63 | long time_since_last_update = current_time - last_update_time; | ^~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In member function 'virtual bool CtffindApp::DoCalculation()': src/programs/ctffind/ctffind.cpp:814:41: warning: unused variable 'boost_ring_contrast' [-Wunused-variable] 814 | const bool boost_ring_contrast = ! command_line_parser.FoundSwitch("fast"); | ^~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'void OverlayCTF(Image*, CTF*, Image*, Image*, int, double*, double*, float*, float*, Curve*, Curve*)': src/programs/ctffind/ctffind.cpp:2316:15: warning: unused variable 'target_sigma' [-Wunused-variable] 2316 | float target_sigma; | ^~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2317:13: warning: unused variable 'chosen_bin' [-Wunused-variable] 2317 | int chosen_bin; | ^~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'bool RescaleSpectrumAndRotationalAverage(Image*, Image*, Image*, int, double*, double*, double*, float*, float*, int, int)': src/programs/ctffind/ctffind.cpp:2447:15: warning: unused variable 'scale_factor' [-Wunused-variable] 2447 | float scale_factor; | ^~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'void ComputeEquiPhaseAverageOfPowerSpectrum(Image*, CTF*, Curve*, Curve*)': src/programs/ctffind/ctffind.cpp:2630:23: warning: unused variable 'lowest_sq_freq_of_ctf_aberration_max' [-Wunused-variable] 2630 | float lowest_sq_freq_of_ctf_aberration_max = std::min( fabs(ctf->ReturnSquaredSpatialFrequencyOfPhaseShiftExtremumGivenDefocus(ctf->GetDefocus1())), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'bool ComputeRotationalAverageOfPowerSpectrum(Image*, CTF*, Image*, Image*, int, double*, double*, double*, double*, float*, float*)': src/programs/ctffind/ctffind.cpp:2780:15: warning: variable 'ctf_diff_from_current_bin' set but not used [-Wunused-but-set-variable] 2780 | float ctf_diff_from_current_bin; | ^~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2856:1: warning: no return statement in function returning non-void [-Wreturn-type] 2856 | } | ^ In file included from src/core/core_headers.h:80, from src/core/run_profiles.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:52: src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnXSize()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:113:18: note: in expansion of macro 'MyPrintWithDetails' 113 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnYSize()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:124:18: note: in expansion of macro 'MyPrintWithDetails' 124 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnZSize()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:135:18: note: in expansion of macro 'MyPrintWithDetails' 135 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnNumberOfSlices()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:146:18: note: in expansion of macro 'MyPrintWithDetails' 146 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual float ImageFile::ReturnPixelSize()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:157:18: note: in expansion of macro 'MyPrintWithDetails' 157 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual bool ImageFile::IsOpen()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:168:18: note: in expansion of macro 'MyPrintWithDetails' 168 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/downhill_simplex.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'bool RescaleSpectrumAndRotationalAverage(Image*, Image*, Image*, int, double*, double*, double*, float*, float*, int, int)': src/programs/ctffind/ctffind.cpp:2599:1: warning: control reaches end of non-void function [-Wreturn-type] 2599 | } | ^ src/programs/ctffind/ctffind.cpp: In function 'int ReturnSpectrumBinNumber(int, float*, Image*, long int, Image*, float*)': src/programs/ctffind/ctffind.cpp:2930:1: warning: control reaches end of non-void function [-Wreturn-type] 2930 | } | ^ src/core/matrix.cpp: In member function 'void RotationMatrix::ConvertToValidEulerAngles(float&, float&, float&)': src/core/matrix.cpp:369:80: warning: 'best_phi' may be used uninitialized [-Wmaybe-uninitialized] 369 | for (current_phi = best_phi - 1.0f; current_phi < old_best_phi + 1.0f; current_phi += 0.1f) | ~~~~~~~~~~~~~^~~~~~ src/core/matrix.cpp:327:23: note: 'best_phi' was declared here 327 | float best_phi; | ^~~~~~~~ src/core/matrix.cpp:371:96: warning: 'best_theta' may be used uninitialized [-Wmaybe-uninitialized] 371 | for (current_theta = best_theta - 1.0f; current_theta < old_best_theta + 1.0f; current_theta += 0.1f) | ~~~~~~~~~~~~~~~^~~~~~ src/core/matrix.cpp:328:23: note: 'best_theta' was declared here 328 | float best_theta; | ^~~~~~~~~~ src/core/matrix.cpp:373:96: warning: 'best_psi' may be used uninitialized [-Wmaybe-uninitialized] 373 | for (current_psi = best_psi - 5.0f; current_psi < old_best_psi + 5.0f; current_psi += 0.1f) | ~~~~~~~~~~~~~^~~~~~ src/core/matrix.cpp:329:23: note: 'best_psi' was declared here 329 | float best_psi; | ^~~~~~~~ In member function 'void DownhillSimplex::free_dmatrix(double**, long int, long int, long int, long int)', inlined from 'DownhillSimplex::~DownhillSimplex()' at src/core/downhill_simplex.cpp:25:15: src/core/downhill_simplex.cpp:327:35: warning: 'void free(void*)' called on pointer '*(double**)((char*) + *8)' with nonzero offset 8 [-Wfree-nonheap-object] 327 | for(i=nrh;i>=nrl;i--) free((char*) (m[i]+ncl)); | ~~~~^~~~~~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp:328:13: warning: 'void free(void*)' called on pointer '*this.DownhillSimplex::initial_values' with nonzero offset 8 [-Wfree-nonheap-object] 328 | free((char*) (m+nrl)); | ~~~~^~~~~~~~~~~~~~~~~ In member function 'void DownhillSimplex::free_dvector(double*, long int, long int)', inlined from 'double DownhillSimplex::amotry(double**, double*, double*, long int, double (*)(double*), long int, double)' at src/core/downhill_simplex.cpp:168:14: src/core/downhill_simplex.cpp:320:13: warning: 'void free(void*)' called on pointer '' with nonzero offset 8 [-Wfree-nonheap-object] 320 | free((char*) (v+nl)); | ~~~~^~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp: In member function 'double DownhillSimplex::amotry(double**, double*, double*, long int, double (*)(double*), long int, double)': src/core/downhill_simplex.cpp:156:17: note: returned from 'double* DownhillSimplex::dvector(long int, long int)' 156 | ptry=dvector(1,ndim); | ~~~~~~~^~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/numeric_text_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void DownhillSimplex::free_dvector(double*, long int, long int)', inlined from 'void DownhillSimplex::amoeba(double**, double*, long int, double, double (*)(double*), long int*)' at src/core/downhill_simplex.cpp:91:14: src/core/downhill_simplex.cpp:320:13: warning: 'void free(void*)' called on pointer '' with nonzero offset 8 [-Wfree-nonheap-object] 320 | free((char*) (v+nl)); | ~~~~^~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp: In member function 'void DownhillSimplex::amoeba(double**, double*, long int, double, double (*)(double*), long int*)': src/core/downhill_simplex.cpp:42:17: note: returned from 'double* DownhillSimplex::dvector(long int, long int)' 42 | psum=dvector(1,ndim); | ~~~~~~~^~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/myapp.cpp:2: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/job_packager.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/tiff_file.cpp:186:96: warning: 'strip_counter' may be used uninitialized [-Wmaybe-uninitialized] 186 | number_of_bytes_placed_in_buffer = TIFFReadEncodedStrip(tif, strip_counter, (char *) buf, (tsize_t) -1); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/tiff_file.cpp:146:18: note: 'strip_counter' was declared here 146 | tstrip_t strip_counter; | ^~~~~~~~~~~~~ src/core/curve.cpp: In member function 'float Curve::ReturnMode()': src/core/curve.cpp:444:16: warning: 'mode' may be used uninitialized [-Wmaybe-uninitialized] 444 | return mode; | ^~~~ src/core/curve.cpp:442:30: note: 'mode' was declared here 442 | float maximum_value, mode; | ^~~~ In file included from src/core/core_headers.h:80, from src/core/ctf.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/myapp.cpp: In member function 'virtual bool MyApp::OnInit()': src/core/myapp.cpp:170:35: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 170 | for (counter = 0; counter < possible_controller_addresses.GetCount(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/functions.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/myapp.cpp: In member function 'void MyApp::OnSlaveSocketEvent(wxSocketEvent&)': src/core/myapp.cpp:779:55: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 779 | for (int counter = 0; counter < temp_array.GetCount(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ src/core/myapp.cpp:664:16: warning: unused variable 'result' [-Wunused-variable] 664 | float *result; | ^~~~~~ src/core/job_packager.cpp: In member function 'void JobPackage::SendJobPackage(wxSocketBase*)': src/core/job_packager.cpp:67:36: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 67 | for (counter = 0; counter < my_profile.executable_name.Length(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:88:36: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 88 | for (counter = 0; counter < my_profile.gui_address.Length(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:108:36: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 108 | for (counter = 0; counter < my_profile.controller_address.Length(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:14:13: warning: unused variable 'number_of_arguments' [-Wunused-variable] 14 | int number_of_arguments; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:16:13: warning: unused variable 'temp_job_number' [-Wunused-variable] 16 | int temp_job_number; | ^~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:55: src/core/job_packager.cpp: In member function 'void JobPackage::ReceiveJobPackage(wxSocketBase*)': src/core/socket_codes.h:6:42: warning: unused variable 'socket_input_buffer' [-Wunused-variable] 6 | #define SETUP_SOCKET_CODES unsigned char socket_input_buffer[SOCKET_CODE_SIZE]; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:348:9: note: in expansion of macro 'SETUP_SOCKET_CODES' 348 | SETUP_SOCKET_CODES | ^~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:358:13: warning: unused variable 'wanted_number_of_processes' [-Wunused-variable] 358 | int wanted_number_of_processes; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:365:13: warning: unused variable 'number_of_arguments' [-Wunused-variable] 365 | int number_of_arguments; | ^~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/randomnumbergenerator.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp: In member function 'void RunJob::SendJob(wxSocketBase*)': src/core/socket_codes.h:6:42: warning: unused variable 'socket_input_buffer' [-Wunused-variable] 6 | #define SETUP_SOCKET_CODES unsigned char socket_input_buffer[SOCKET_CODE_SIZE]; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:838:9: note: in expansion of macro 'SETUP_SOCKET_CODES' 838 | SETUP_SOCKET_CODES | ^~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp: In member function 'void RunJob::RecieveJob(wxSocketBase*)': src/core/socket_codes.h:6:42: warning: unused variable 'socket_input_buffer' [-Wunused-variable] 6 | #define SETUP_SOCKET_CODES unsigned char socket_input_buffer[SOCKET_CODE_SIZE]; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:1019:9: note: in expansion of macro 'SETUP_SOCKET_CODES' 1019 | SETUP_SOCKET_CODES | ^~~~~~~~~~~~~~~~~~ src/core/functions.cpp: In function 'bool GetMRCDetails(const char*, int&, int&, int&)': src/core/functions.cpp:65:13: warning: variable 'success' set but not used [-Wunused-but-set-variable] 65 | int success; | ^~~~~~~ src/core/functions.cpp: In function 'void SplitFileIntoDirectoryAndFile(wxString&, wxString&, wxString&)': src/core/functions.cpp:571:59: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 571 | for (int directory_counter = 0; directory_counter < directories.GetCount(); directory_counter++) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/dm_file.cpp:6: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/globals.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void DownhillSimplex::free_dvector(double*, long int, long int)', inlined from 'double DownhillSimplex::amotry(double**, double*, double*, long int, void*, double (*)(void*, double*), long int, double)' at src/core/downhill_simplex.cpp:190:14: src/core/downhill_simplex.cpp:320:13: warning: 'void free(void*)' called on pointer '' with nonzero offset 8 [-Wfree-nonheap-object] 320 | free((char*) (v+nl)); | ~~~~^~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp: In member function 'double DownhillSimplex::amotry(double**, double*, double*, long int, void*, double (*)(void*, double*), long int, double)': src/core/downhill_simplex.cpp:178:17: note: returned from 'double* DownhillSimplex::dvector(long int, long int)' 178 | ptry=dvector(1,ndim); | ~~~~~~~^~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/brute_force_search.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/functions.cpp: In function 'int ReturnAppropriateNumberOfThreads(int)': src/core/functions.cpp:961:7: warning: unused variable 'physicalProcs' [-Wunused-variable] 961 | int physicalProcs = 0; | ^~~~~~~~~~~~~ src/core/functions.cpp:962:7: warning: unused variable 'logicalProcessorCount' [-Wunused-variable] 962 | int logicalProcessorCount = 0; | ^~~~~~~~~~~~~~~~~~~~~ src/core/functions.cpp:963:7: warning: unused variable 'processorCoreCount' [-Wunused-variable] 963 | int processorCoreCount = 0; | ^~~~~~~~~~~~~~~~~~ src/core/brute_force_search.cpp: In member function 'void BruteForceSearch::Run()': src/core/brute_force_search.cpp:180:25: warning: unused variable 'maxThreads' [-Wunused-variable] 180 | int numThreads, maxThreads = 12; | ^~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/mrc_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/dm_file.cpp: In destructor 'DMFile::~DMFile()': src/core/dm_file.cpp:49:13: warning: statement has no effect [-Wunused-value] 49 | true; | ^ src/core/dm_file.cpp: In member function 'int DMFile::readDM(wxString, unsigned char*, bool, int)': src/core/dm_file.cpp:162:25: warning: statement is a reference, not call, to function 'abort' [-Waddress] 162 | abort; | ^~~~~ src/core/dm_file.cpp:162:25: warning: statement has no effect [-Wunused-value] src/core/dm_file.cpp: In member function 'int DMFile::readTagGroupWithVersion(std::ifstream*, unsigned char*, bool, int)': src/core/dm_file.cpp:303:76: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 303 | if ( sb ) std::cout << "Warning: Swapping header bytes" << endl; | ^~~~ In file included from src/core/core_headers.h:47: /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:304:56: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 304 | std::cout << "Version: " << version << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:305:64: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 305 | std::cout << "File length: " << file_length << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:306:62: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 306 | std::cout << "Endianness: " << endianness << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:318:78: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 318 | std::cout << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:319:151: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 319 | std::cout << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:320:59: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 320 | std::cout << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ In member function 'void DownhillSimplex::free_dvector(double*, long int, long int)', inlined from 'void DownhillSimplex::amoeba(double**, double*, long int, double, void*, double (*)(void*, double*), long int*)' at src/core/downhill_simplex.cpp:148:14: src/core/downhill_simplex.cpp:320:13: warning: 'void free(void*)' called on pointer '' with nonzero offset 8 [-Wfree-nonheap-object] 320 | free((char*) (v+nl)); | ~~~~^~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp: In member function 'void DownhillSimplex::amoeba(double**, double*, long int, double, void*, double (*)(void*, double*), long int*)': src/core/downhill_simplex.cpp:99:17: note: returned from 'double* DownhillSimplex::dvector(long int, long int)' 99 | psum=dvector(1,ndim); | ~~~~~~~^~~~~~~~ src/core/dm_file.cpp:334:69: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 334 | if ( show == 2 ) std::cout << "<" << buf << "/>" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:337:39: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 337 | if ( show == 1 ) std::cout << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:338:53: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 338 | if ( show == 2 ) std::cout << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp: In member function 'int DMFile::readTagGroupData(std::ifstream*, int, unsigned char*, bool)': src/core/dm_file.cpp:386:21: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 386 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:396:21: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 396 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp: In member function 'int DMFile::readTag(std::ifstream*, int, unsigned char*, bool, int&)': src/core/dm_file.cpp:429:49: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 429 | std::cout << "\tlen=" << len << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:430:63: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 430 | std::cerr << "Error: tag length too long!" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:445:30: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 445 | std::cout << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:446:29: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 446 | for ( i=0; i" << tag << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:473:47: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 473 | if ( show == 1 ) std::cout << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:484:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 484 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:492:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 492 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:499:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 499 | for ( i=0; i" << buf << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:509:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 509 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:517:53: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 517 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:526:53: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 526 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:555:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 555 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:559:86: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 559 | std::cerr << "Error: Data type " << dt << " not defined!" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:589:92: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 589 | if ( show == 1 ) std::cout << "\t" << tag << "=" << val << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:593:130: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 593 | if ( show == 1 ) std::cout << "\t" << tag << "=" << samplingX() << samplingY() << samplingZ() << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:598:92: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 598 | if ( show == 1 ) std::cout << "\t" << tag << "=" << val << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:602:113: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 602 | if ( show == 1 ) std::cout << "\t" << "\t" << "=" << arr[0] << "x" << arr[1] << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:605:113: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 605 | if ( show == 1 ) std::cout << "\t" << "\t" << "=" << arr[0] << "x" << arr[1] << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:612:83: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 612 | std::cout << "\t" << tag << "=" << val << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:613:111: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 613 | for ( i=0; i" << dvalue << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:664:79: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 664 | std::cout << "" << ivalue << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp: In member function 'int DMFile::dm3_type_length(int)': src/core/dm_file.cpp:687:99: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 687 | std::cerr << "Error: Data type " << dm3_type << " length not defined!" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ In file included from src/core/core_headers.h:80, from image_trim.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/progressbar.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'void ComputeFRCBetween1DSpectrumAndFit(int, double*, double*, float*, double*, double*, int)': src/programs/ctffind/ctffind.cpp:2222:51: warning: '*half_window_width[1]' may be used uninitialized [-Wmaybe-uninitialized] 2222 | half_window_width[0] = half_window_width[1]; | ~~~~~~~~~~~~~~~~~~~^ image_trim.cpp: In member function 'void Image::MultiplyPixelWise(Image&)': image_trim.cpp:115:13: warning: unused variable 'i' [-Wunused-variable] 115 | int i; | ^ image_trim.cpp: In member function 'void Image::WriteSlices(MRCFile*, long int, long int)': image_trim.cpp:1277:13: warning: unused variable 'number_of_slices' [-Wunused-variable] 1277 | int number_of_slices = (end_slice - start_slice) + 1; | ^~~~~~~~~~~~~~~~ image_trim.cpp: In member function 'void Image::UpdateDistributionOfRealValues(EmpiricalDistribution*, float, bool, float, float, float)': image_trim.cpp:1953:15: warning: unused variable 'edge' [-Wunused-variable] 1953 | float edge; | ^~~~ image_trim.cpp: In member function 'void Image::ComputeAmplitudeSpectrumFull2D(Image*, bool, float)': image_trim.cpp:2711:13: warning: unused variable 'image_addr_i' [-Wunused-variable] 2711 | int image_addr_i; | ^~~~~~~~~~~~ image_trim.cpp:2712:13: warning: unused variable 'image_addr_j' [-Wunused-variable] 2712 | int image_addr_j; | ^~~~~~~~~~~~ image_trim.cpp:2713:13: warning: unused variable 'i_mate' [-Wunused-variable] 2713 | int i_mate; | ^~~~~~ image_trim.cpp:2714:13: warning: unused variable 'j_mate' [-Wunused-variable] 2714 | int j_mate; | ^~~~~~ src/core/functions.cpp: At global scope: src/core/functions.cpp:782:12: warning: 'int numCoresAndLogicalProcs(int*, int*)' defined but not used [-Wunused-function] 782 | static int numCoresAndLogicalProcs(int *physical, int *logical) | ^~~~~~~~~~~~~~~~~~~~~~~ image_trim.cpp: In member function 'void Image::SpectrumBoxConvolution(Image*, int, float)': image_trim.cpp:2783:13: warning: unused variable 'l' [-Wunused-variable] 2783 | int l; | ^ image_trim.cpp:2793:14: warning: unused variable 'address_within_input' [-Wunused-variable] 2793 | long address_within_input; | ^~~~~~~~~~~~~~~~~~~~ image_trim.cpp: In member function 'void Image::TaperEdges()': image_trim.cpp:3082:57: warning: variable 'second_dimension' set but not used [-Wunused-but-set-variable] 3082 | int second_dimension; | ^~~~~~~~~~~~~~~~ image_trim.cpp:3083:57: warning: variable 'third_dimension' set but not used [-Wunused-but-set-variable] 3083 | int third_dimension; | ^~~~~~~~~~~~~~~ image_trim.cpp: In member function 'void Image::InsertOtherImageAtSpecifiedPosition(Image*, int, int, int, float)': image_trim.cpp:3427:13: warning: unused variable 'kk_logi' [-Wunused-variable] 3427 | int kk_logi; | ^~~~~~~ image_trim.cpp:3430:13: warning: unused variable 'jj_logi' [-Wunused-variable] 3430 | int jj_logi; | ^~~~~~~ image_trim.cpp:3434:13: warning: unused variable 'ii_logi' [-Wunused-variable] 3434 | int ii_logi; | ^~~~~~~ image_trim.cpp: In member function 'void Image::ClipInto(Image*, float, bool, float, int, int, int)': image_trim.cpp:3482:13: warning: unused variable 'array_address' [-Wunused-variable] 3482 | int array_address = 0; | ^~~~~~~~~~~~~ image_trim.cpp:3500:16: warning: unused variable 'junk' [-Wunused-variable] 3500 | double junk; | ^~~~ src/core/dm_file.cpp: In member function 'virtual bool DMFile::OpenFile(std::string, bool, bool)': src/core/dm_file.cpp:57:15: warning: 'fake_pointer' is used uninitialized [-Wuninitialized] 57 | readDM(wxString(wanted_filename), fake_pointer, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/dm_file.cpp:56:24: note: 'fake_pointer' was declared here 56 | unsigned char *fake_pointer; | ^~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'bool RescaleSpectrumAndRotationalAverage(Image*, Image*, Image*, int, double*, double*, double*, float*, float*, int, int)': src/programs/ctffind/ctffind.cpp:2526:110: warning: 'normalisation_bin_number' may be used uninitialized [-Wmaybe-uninitialized] 2526 | actually_do_rescaling = (peak[normalisation_bin_number] - background[normalisation_bin_number]) > 0.0; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ src/programs/ctffind/ctffind.cpp:2439:13: note: 'normalisation_bin_number' was declared here 2439 | int normalisation_bin_number; | ^~~~~~~~~~~~~~~~~~~~~~~~ src/core/brute_force_search.cpp:259:56: warning: 'my_progress_bar' may be used uninitialized [-Wmaybe-uninitialized] 259 | my_progress_bar->Update(num_iterations_completed); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/brute_force_search.cpp:181:22: note: 'my_progress_bar' was declared here 181 | ProgressBar *my_progress_bar; | ^~~~~~~~~~~~~~~ src/core/dm_file.cpp: In member function 'int DMFile::readTag(std::ifstream*, int, unsigned char*, bool, int&)': src/core/dm_file.cpp:566:55: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized] 566 | datatype_from_dm3_type((DMDataType)val); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ src/core/dm_file.cpp:415:33: note: 'val' was declared here 415 | double val, arr[256]; | ^~~ src/core/job_packager.cpp:1051:60: warning: 'transfer_size' may be used uninitialized [-Wmaybe-uninitialized] 1051 | unsigned char *transfer_buffer = new unsigned char[transfer_size]; | ^~~~~~~~~~~~~ src/core/job_packager.cpp:1024:14: note: 'transfer_size' declared here 1024 | long transfer_size; | ^~~~~~~~~~~~~ In member function 'void JobResult::SetResult(int, float*)', inlined from 'JobResult::JobResult(int, float*)' at src/core/job_packager.cpp:1416:11: src/core/job_packager.cpp:1458:33: warning: '*this.JobResult::result_data' is used uninitialized [-Wuninitialized] 1458 | if (result_size != 0 || result_data != NULL) | ^~~~~~~~~~~ src/core/numeric_text_file.cpp: In member function 'void NumericTextFile::Init()': src/core/numeric_text_file.cpp:167:34: warning: 'current_records_per_line' may be used uninitialized [-Wmaybe-uninitialized] 167 | records_per_line = current_records_per_line; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/numeric_text_file.cpp:106:21: note: 'current_records_per_line' was declared here 106 | int current_records_per_line; | ^~~~~~~~~~~~~~~~~~~~~~~~ src/core/myapp.cpp: In member function 'virtual void* CalculateThread::Entry()': src/core/myapp.cpp:1612:17: warning: 'thread_action_copy' may be used uninitialized [-Wmaybe-uninitialized] 1612 | if (thread_action_copy == THREAD_START_NEXT_JOB) | ^~ src/core/myapp.cpp:1588:13: note: 'thread_action_copy' was declared here 1588 | int thread_action_copy; | ^~~~~~~~~~~~~~~~~~ src/core/functions.cpp: In function 'wxString ReceivewxStringFromSocket(wxSocketBase*)': src/core/functions.cpp:191:77: warning: 'length_of_string' may be used uninitialized [-Wmaybe-uninitialized] 191 | unsigned char *transfer_buffer = new unsigned char[length_of_string + 1]; // + 1 for the terminating null character; | ~~~~~~~~~~~~~~~~~^~~ src/core/functions.cpp:181:13: note: 'length_of_string' declared here 181 | int length_of_string; | ^~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In member function 'virtual bool CtffindApp::DoCalculation()': src/programs/ctffind/ctffind.cpp:2029:101: warning: array subscript 0 is outside array bounds of 'double [0]' [-Warray-bounds=] 2029 | results_array[5] = pixel_size_for_fitting / spatial_frequency[last_bin_with_good_fit]; // The resolution (Angstroms) up to which Thon rings are well fit by the CTF | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ cc1plus: note: source object is likely at address zero src/programs/ctffind/ctffind.cpp:1875:164: warning: array subscript 0 is outside array bounds of 'double [0]' [-Warray-bounds=] 1875 | normalization_radius_max = std::max(normalization_radius_max,float(average_spectrum->logical_x_dimension * spatial_frequency[last_bin_with_good_fit])); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ cc1plus: note: source object is likely at address zero src/programs/ctffind/ctffind.cpp:2008:120: warning: 'output_text_avrot' may be used uninitialized [-Wmaybe-uninitialized] 2008 | wxPrintf("Detailed results, including 1D fit profiles : %s\n",output_text_avrot->ReturnFilename()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ src/programs/ctffind/ctffind.cpp:856:34: note: 'output_text_avrot' was declared here 856 | NumericTextFile *output_text_avrot; | ^~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2031:9: warning: 'last_bin_without_aliasing' may be used uninitialized [-Wmaybe-uninitialized] 2031 | if (last_bin_without_aliasing == 0) | ^~ src/programs/ctffind/ctffind.cpp:904:49: note: 'last_bin_without_aliasing' was declared here 904 | int last_bin_without_aliasing; | ^~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:969:98: warning: 'output_text' may be used uninitialized [-Wmaybe-uninitialized] 969 | wxPrintf("Results will be written to this file: %s\n",output_text->ReturnFilename()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ src/programs/ctffind/ctffind.cpp:855:34: note: 'output_text' was declared here 855 | NumericTextFile *output_text; | ^~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:1961:125: warning: 'my_progress_bar' may be used uninitialized [-Wmaybe-uninitialized] 1961 | if ( (!old_school_input) && number_of_micrographs > 1 && is_running_locally) my_progress_bar->Update(current_micrograph_number); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:854:42: note: 'my_progress_bar' was declared here 854 | ProgressBar *my_progress_bar; | ^~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:1157:25: warning: 'resampling_is_necessary' may be used uninitialized [-Wmaybe-uninitialized] 1157 | if (resampling_is_necessary) | ^~ src/programs/ctffind/ctffind.cpp:869:41: note: 'resampling_is_necessary' was declared here 869 | bool resampling_is_necessary; | ^~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2072:33: warning: 'conjugate_gradient_minimizer' may be used uninitialized [-Wmaybe-uninitialized] 2072 | if (! defocus_is_known) delete conjugate_gradient_minimizer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:884:30: note: 'conjugate_gradient_minimizer' was declared here 884 | ConjugateGradient *conjugate_gradient_minimizer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2022:26: warning: 'final_score' may be used uninitialized [-Wmaybe-uninitialized] 2022 | results_array[4] = final_score; // CTFFIND score | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:907:41: note: 'final_score' was declared here 907 | float final_score; | ^~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link g++ -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -L/usr/lib/x86_64-linux-gnu -pthread -lwx_baseu-3.2 -lwx_baseu_net-3.2 -Wl,-z,relro -Wl,-z,now -o ctffind src/programs/ctffind/ctffind-ctffind.o src/core/ctffind-functions.o src/core/ctffind-globals.o src/core/ctffind-randomnumbergenerator.o src/core/ctffind-userinput.o src/core/ctffind-curve.o ctffind-image_trim.o src/core/ctffind-matrix.o src/core/ctffind-symmetry_matrix.o src/core/ctffind-abstract_image_file.o src/core/ctffind-mrc_header.o src/core/ctffind-mrc_file.o src/core/ctffind-tiff_file.o src/core/ctffind-dm_file.o src/core/ctffind-image_file.o src/core/ctffind-job_packager.o src/core/ctffind-job_tracker.o src/core/ctffind-run_profiles.o src/core/ctffind-myapp.o src/core/ctffind-empirical_distribution.o src/core/ctffind-ctf.o src/core/ctffind-numeric_text_file.o src/core/ctffind-progressbar.o src/core/ctffind-downhill_simplex.o src/core/ctffind-brute_force_search.o src/core/ctffind-va04.o src/core/ctffind-conjugate_gradient.o -ltiff -ljpeg -lz -ldl -lfftw3f libtool: link: g++ -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o ctffind src/programs/ctffind/ctffind-ctffind.o src/core/ctffind-functions.o src/core/ctffind-globals.o src/core/ctffind-randomnumbergenerator.o src/core/ctffind-userinput.o src/core/ctffind-curve.o ctffind-image_trim.o src/core/ctffind-matrix.o src/core/ctffind-symmetry_matrix.o src/core/ctffind-abstract_image_file.o src/core/ctffind-mrc_header.o src/core/ctffind-mrc_file.o src/core/ctffind-tiff_file.o src/core/ctffind-dm_file.o src/core/ctffind-image_file.o src/core/ctffind-job_packager.o src/core/ctffind-job_tracker.o src/core/ctffind-run_profiles.o src/core/ctffind-myapp.o src/core/ctffind-empirical_distribution.o src/core/ctffind-ctf.o src/core/ctffind-numeric_text_file.o src/core/ctffind-progressbar.o src/core/ctffind-downhill_simplex.o src/core/ctffind-brute_force_search.o src/core/ctffind-va04.o src/core/ctffind-conjugate_gradient.o -L/usr/lib/x86_64-linux-gnu -lwx_baseu-3.2 -lwx_baseu_net-3.2 -ltiff -ljpeg -lz -ldl -lfftw3f -pthread make[1]: Leaving directory '/build/reproducible-path/ctffind-4.1.14' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/ctffind-4.1.14' no automatic installation make[1]: Leaving directory '/build/reproducible-path/ctffind-4.1.14' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ctffind-dbgsym' in '../ctffind-dbgsym_4.1.14-3_amd64.deb'. dpkg-deb: building package 'ctffind' in '../ctffind_4.1.14-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ctffind_4.1.14-3_amd64.buildinfo dpkg-genchanges --build=binary -O../ctffind_4.1.14-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/739329 and its subdirectories I: Current time: Tue Apr 7 07:50:04 -12 2026 I: pbuilder-time-stamp: 1775591404 Wed Mar 5 13:27:06 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Wed Mar 5 13:27:06 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Wed Mar 5 13:33:25 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Wed Mar 5 13:33:26 UTC 2025 I: ctffind_4.1.14-3_amd64.changes: Format: 1.8 Date: Wed, 17 Jul 2024 12:01:49 +0000 Source: ctffind Binary: ctffind ctffind-dbgsym Architecture: amd64 Version: 4.1.14-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alex Myczko Description: ctffind - fast and accurate defocus estimation from electron micrographs Changes: ctffind (4.1.14-3) unstable; urgency=medium . * Bump standards version to 4.7.0. Checksums-Sha1: 9fec29da287bcaf70a3bca99465b1947a9a70b55 2715968 ctffind-dbgsym_4.1.14-3_amd64.deb 39688ac1b5f1ab09adae4081cdb9156e6ada7078 10680 ctffind_4.1.14-3_amd64.buildinfo 186ce751f4dfe71b23f4024c7c15dd41859ee15f 362188 ctffind_4.1.14-3_amd64.deb Checksums-Sha256: abc80724c32077d8e4ce6aaa944553949effc93187b1901fadbc757a8330aa3d 2715968 ctffind-dbgsym_4.1.14-3_amd64.deb dd966c85d6c77e2862f1f564f9bfb4f2eabd923c3a5a4a72486ca2c56fbf514b 10680 ctffind_4.1.14-3_amd64.buildinfo 62c1b7f676d8a54228f19af373915396c4ece9a92ae50dccec1d0e9da1642fad 362188 ctffind_4.1.14-3_amd64.deb Files: 21190bc0c0f08246361a70e3fd33e158 2715968 debug optional ctffind-dbgsym_4.1.14-3_amd64.deb 6c3702e3c29019cfb16d5a118fc73f23 10680 science optional ctffind_4.1.14-3_amd64.buildinfo 66d1153025ff1b6aa4bd108407a33e88 362188 science optional ctffind_4.1.14-3_amd64.deb Wed Mar 5 13:33:27 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_14-34356.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.I4rQKrE5/ctffind_4.1.14-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.I4rQKrE5/ctffind_4.1.14-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.I4rQKrE5/ctffind_4.1.14-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.I4rQKrE5/b1/ctffind_4.1.14-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.I4rQKrE5/b2/ctffind_4.1.14-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 230ms CPU time consumed: 229ms Wed Mar 5 13:33:28 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Wed Mar 5 13:33:28 UTC 2025 I: ctffind from trixie built successfully and reproducibly on amd64. Wed Mar 5 13:33:29 UTC 2025 I: Submitting .buildinfo files to external archives: Wed Mar 5 13:33:29 UTC 2025 I: Submitting 12K b1/ctffind_4.1.14-3_amd64.buildinfo.asc Wed Mar 5 13:33:29 UTC 2025 I: Submitting 12K b2/ctffind_4.1.14-3_amd64.buildinfo.asc Wed Mar 5 13:33:30 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Mar 5 13:33:30 UTC 2025 I: Done submitting .buildinfo files. Wed Mar 5 13:33:30 UTC 2025 I: Removing signed ctffind_4.1.14-3_amd64.buildinfo.asc files: removed './b1/ctffind_4.1.14-3_amd64.buildinfo.asc' removed './b2/ctffind_4.1.14-3_amd64.buildinfo.asc'