Sun Feb 23 17:54:55 UTC 2025 I: starting to build dascrubber/trixie/amd64 on jenkins on '2025-02-23 17:54' Sun Feb 23 17:54:55 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_13/33303/console.log Sun Feb 23 17:54:55 UTC 2025 I: Downloading source for trixie/dascrubber=1.1-4 --2025-02-23 17:54:55-- http://deb.debian.org/debian/pool/main/d/dascrubber/dascrubber_1.1-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2004 (2.0K) [text/prs.lines.tag] Saving to: ‘dascrubber_1.1-4.dsc’ 0K . 100% 242M=0s 2025-02-23 17:54:55 (242 MB/s) - ‘dascrubber_1.1-4.dsc’ saved [2004/2004] Sun Feb 23 17:54:55 UTC 2025 I: dascrubber_1.1-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dascrubber Binary: dascrubber Architecture: any Version: 1.1-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://dazzlerblog.wordpress.com/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/dascrubber Vcs-Git: https://salsa.debian.org/med-team/dascrubber.git Testsuite: autopkgtest Testsuite-Triggers: daligner, dazzdb Build-Depends: debhelper-compat (= 13) Package-List: dascrubber deb science optional arch=any Checksums-Sha1: 909b8b8afb434d98b8da375ddd6e99c33c6cf74f 116926 dascrubber_1.1.orig.tar.gz 863b87d564b1322bfba1ab5551a7e86f2d608cf2 4408 dascrubber_1.1-4.debian.tar.xz Checksums-Sha256: cd350ac73a580e659c2f3f6fea12c99ceaa62445a7d7c968af97410acab88fcb 116926 dascrubber_1.1.orig.tar.gz 7a51efd44e62fe725e69c34241d975b72cee3605bdb81775c117ccf5556051ac 4408 dascrubber_1.1-4.debian.tar.xz Files: fbeda989c9ab8ae7aff802810be4a704 116926 dascrubber_1.1.orig.tar.gz f62ff0b9075fffd223d67aa0092d5a17 4408 dascrubber_1.1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmEvgicRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEI0RAAhZB7OgSv10u8Kg37snlvJPczyAB1/sOj IQcvhsOerqU+YmZY//Jh/61jyHqHLNYGCUPOJMIXM/CVun/cNmh02UJB6280DWMQ Beu6WPdwl3s0oMg4krzuj9l58y0sFBhU+b0aPJeafrAEsn6XV5gvIXyq00R3zmWC Zz4/Qr6hAPOO0TTxCmqqPa7mlAf7r+Mv6LzzSzJ3yrNJWNRIc05Z7p5oQGDpzX8T K5skOCeVeNXF2yyyANXOvlHXyPnotXbF96yU4hjtw+AkCqFKLrZKwpCWGpC8lR4v val7vmDyNmh3bLJnvW6o7vnHgzk+24P1ovPAUHtVuFYjrETGQ3EC93shsFKXlYFo QZAtsUL8ZW1T1BFHG49A3LaDGdnxTamZb3Z+Y5Tw/yQCQsBtqycB3+W3H4hZF1nj x5nDzuYbfMBFW955xTGeVw/O55XUQS2cYgkn+ZEtQfMq2Ba8clxysxfYHgelSCvD 2N/vFYkkEPaLKeOMfVyLcM1MX2XY4FZwkhxUTFqte72rP3UH0Uhd5EvY0mOiIMBK JeiaUlU6ibCNL6/DmqO9ylwU+fOYw19zxqn4+ZJw+GamaQ0JMddVAuy/UQG1Gn1Q nKeygrVmH6UxnzTUoeajk3AslWxGyCnJIaVHzu9UXCitSmyrmLq7nikFdpT6a4RG XLfhafG0mDw= =A0dE -----END PGP SIGNATURE----- Sun Feb 23 17:54:55 UTC 2025 I: Checking whether the package is not for us Sun Feb 23 17:54:55 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sun Feb 23 17:54:55 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sun Feb 23 17:58:54 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Feb 23 05:54:58 -12 2025 I: pbuilder-time-stamp: 1740333298 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dascrubber_1.1-4.dsc] I: copying [./dascrubber_1.1.orig.tar.gz] I: copying [./dascrubber_1.1-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./dascrubber_1.1-4.dsc: unsupported subcommand dpkg-source: info: extracting dascrubber in dascrubber-1.1 dpkg-source: info: unpacking dascrubber_1.1.orig.tar.gz dpkg-source: info: unpacking dascrubber_1.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying destdir-install.patch dpkg-source: info: applying compiler-flags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3427408/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='17559cc144614f9bba7f9708a169e576' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3427408' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XIHudaqs/pbuilderrc_tHYH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XIHudaqs/b1 --logfile b1/build.log dascrubber_1.1-4.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3427408/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 20.6 MB of archives. After unpacking 77.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Fetched 20.6 MB in 1s (40.8 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-3_amd64.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_amd64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-6) ... Setting up bsdextrautils (2.40.4-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dascrubber-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dascrubber_1.1-4_source.changes dpkg-buildpackage: info: source package dascrubber dpkg-buildpackage: info: source version 1.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j20 clean make[1]: Entering directory '/build/reproducible-path/dascrubber-1.1' rm -f DAScover DASqv DAStrim DASpatch DASedit DASmap DASrealign REPcover REPqv REPtrim rm -fr *.dSYM rm -f scrubber.tar.gz make[1]: Leaving directory '/build/reproducible-path/dascrubber-1.1' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j20 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dascrubber-1.1' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dascrubber-1.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAScover.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DAScover cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dascrubber-1.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASqv.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DASqv cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dascrubber-1.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAStrim.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DAStrim cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dascrubber-1.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASpatch.c align.h align.c DB.c DB.h QV.c QV.h -lm -o DASpatch cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dascrubber-1.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASedit.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DASedit cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dascrubber-1.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASmap.c DB.c DB.h QV.c QV.h -lm -o DASmap cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dascrubber-1.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASrealign.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DASrealign cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dascrubber-1.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now REPcover.c DB.c DB.h QV.c QV.h -lm -o REPcover cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dascrubber-1.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now REPqv.c DB.c DB.h QV.c QV.h -lm -o REPqv cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dascrubber-1.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now REPtrim.c DB.c DB.h QV.c QV.h -lm -o REPtrim DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c:604:32: note: 'css' was declared here 604 | int allflag, cutoff, css; | ^~~ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c:604:32: note: 'css' was declared here 604 | int allflag, cutoff, css; | ^~~ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c:604:32: note: 'css' was declared here 604 | int allflag, cutoff, css; | ^~~ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c:604:32: note: 'css' was declared here 604 | int allflag, cutoff, css; | ^~~ In function 'gap_status', inlined from 'GAP_ANALYSIS' at DAStrim.c:1885:19, inlined from 'GAPS' at DAStrim.c:1982:14: DAStrim.c:1454:38: warning: 'ridx' may be used uninitialized [-Wmaybe-uninitialized] 1454 | { if (lidx < 0 && Ridx < 0 && Lidx >= 0) | ~~~~~^~~ DAStrim.c: In function 'GAPS': DAStrim.c:1356:15: note: 'ridx' was declared here 1356 | int lidx, ridx, sidx, Lidx, Ridx; | ^~~~ In function 'gap_status', inlined from 'GAP_ANALYSIS' at DAStrim.c:1885:19, inlined from 'GAPS' at DAStrim.c:1982:14: DAStrim.c:1454:42: warning: 'lidx' may be used uninitialized [-Wmaybe-uninitialized] 1454 | { if (lidx < 0 && Ridx < 0 && Lidx >= 0) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ DAStrim.c: In function 'GAPS': DAStrim.c:1356:9: note: 'lidx' was declared here 1356 | int lidx, ridx, sidx, Lidx, Ridx; | ^~~~ DB.c: In function 'Read_All_Sequences': DB.c:1875:15: warning: 'free' called on pointer 'p' with nonzero offset 1 [-Wfree-nonheap-object] 1875 | free(seq); | ^~~~~~~~~ In function 'Malloc', inlined from 'Read_All_Sequences' at DB.c:1852:18: DB.c:66:12: note: returned from 'malloc' 66 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function 'Read_All_Sequences': DB.c:1875:15: warning: 'free' called on pointer 'p' with nonzero offset 1 [-Wfree-nonheap-object] 1875 | free(seq); | ^~~~~~~~~ In function 'Malloc', inlined from 'Read_All_Sequences' at DB.c:1852:18: DB.c:66:12: note: returned from 'malloc' 66 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function 'Read_All_Sequences': DB.c:1875:15: warning: 'free' called on pointer 'p' with nonzero offset 1 [-Wfree-nonheap-object] 1875 | free(seq); | ^~~~~~~~~ In function 'Malloc', inlined from 'Read_All_Sequences' at DB.c:1852:18: DB.c:66:12: note: returned from 'malloc' 66 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function 'Read_All_Sequences': DB.c:1875:15: warning: 'free' called on pointer 'p' with nonzero offset 1 [-Wfree-nonheap-object] 1875 | free(seq); | ^~~~~~~~~ In function 'Malloc', inlined from 'Read_All_Sequences' at DB.c:1852:18: DB.c:66:12: note: returned from 'malloc' 66 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized [-Wmaybe-uninitialized] 4424 | n = L/sizeof(uint16); | ~^~~~~~~~~~~~~~~ align.c:4317:11: note: 'L' was declared here 4317 | int L, D; | ^ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized [-Wmaybe-uninitialized] 4424 | n = L/sizeof(uint16); | ~^~~~~~~~~~~~~~~ align.c:4317:11: note: 'L' was declared here 4317 | int L, D; | ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c:604:32: note: 'css' was declared here 604 | int allflag, cutoff, css; | ^~~ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized [-Wmaybe-uninitialized] 4424 | n = L/sizeof(uint16); | ~^~~~~~~~~~~~~~~ align.c:4317:11: note: 'L' was declared here 4317 | int L, D; | ^ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized [-Wmaybe-uninitialized] 4424 | n = L/sizeof(uint16); | ~^~~~~~~~~~~~~~~ align.c:4317:11: note: 'L' was declared here 4317 | int L, D; | ^ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized [-Wmaybe-uninitialized] 4424 | n = L/sizeof(uint16); | ~^~~~~~~~~~~~~~~ align.c:4317:11: note: 'L' was declared here 4317 | int L, D; | ^ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c:604:32: note: 'css' was declared here 604 | int allflag, cutoff, css; | ^~~ DB.c: In function 'Read_All_Sequences': DB.c:1875:15: warning: 'free' called on pointer 'p' with nonzero offset 1 [-Wfree-nonheap-object] 1875 | free(seq); | ^~~~~~~~~ In function 'Malloc', inlined from 'Read_All_Sequences' at DB.c:1852:18: DB.c:66:12: note: returned from 'malloc' 66 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c:604:32: note: 'css' was declared here 604 | int allflag, cutoff, css; | ^~~ DB.c: In function 'Read_All_Sequences': DB.c:1875:15: warning: 'free' called on pointer 'p' with nonzero offset 1 [-Wfree-nonheap-object] 1875 | free(seq); | ^~~~~~~~~ In function 'Malloc', inlined from 'Read_All_Sequences' at DB.c:1852:18: DB.c:66:12: note: returned from 'malloc' 66 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c:604:32: note: 'css' was declared here 604 | int allflag, cutoff, css; | ^~~ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c:604:32: note: 'css' was declared here 604 | int allflag, cutoff, css; | ^~~ align.c: In function 'Compute_Alignment': align.c:4424:17: warning: 'L' may be used uninitialized [-Wmaybe-uninitialized] 4424 | n = L/sizeof(uint16); | ~^~~~~~~~~~~~~~~ align.c:4317:11: note: 'L' was declared here 4317 | int L, D; | ^ DB.c: In function 'Read_All_Sequences': DB.c:1875:15: warning: 'free' called on pointer 'p' with nonzero offset 1 [-Wfree-nonheap-object] 1875 | free(seq); | ^~~~~~~~~ In function 'Malloc', inlined from 'Read_All_Sequences' at DB.c:1852:18: DB.c:66:12: note: returned from 'malloc' 66 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function 'Read_All_Sequences': DB.c:1875:15: warning: 'free' called on pointer 'p' with nonzero offset 1 [-Wfree-nonheap-object] 1875 | free(seq); | ^~~~~~~~~ In function 'Malloc', inlined from 'Read_All_Sequences' at DB.c:1852:18: DB.c:66:12: note: returned from 'malloc' 66 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function 'Read_All_Sequences': DB.c:1875:15: warning: 'free' called on pointer 'p' with nonzero offset 1 [-Wfree-nonheap-object] 1875 | free(seq); | ^~~~~~~~~ In function 'Malloc', inlined from 'Read_All_Sequences' at DB.c:1852:18: DB.c:66:12: note: returned from 'malloc' 66 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ DB.c: In function 'Trim_DB': DB.c:691:14: warning: 'css' may be used uninitialized [-Wmaybe-uninitialized] 691 | if (css) | ^ DB.c:604:32: note: 'css' was declared here 604 | int allflag, cutoff, css; | ^~~ DB.c: In function 'Read_All_Sequences': DB.c:1875:15: warning: 'free' called on pointer 'p' with nonzero offset 1 [-Wfree-nonheap-object] 1875 | free(seq); | ^~~~~~~~~ In function 'Malloc', inlined from 'Read_All_Sequences' at DB.c:1852:18: DB.c:66:12: note: returned from 'malloc' 66 | if ((p = malloc(size)) == NULL) | ^~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/dascrubber-1.1' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/dascrubber-1.1' dh_auto_install make -j20 install DESTDIR=/build/reproducible-path/dascrubber-1.1/debian/dascrubber AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/dascrubber-1.1' install -d /build/reproducible-path/dascrubber-1.1/debian/dascrubber/usr/bin install DAScover DASqv DAStrim DASpatch DASedit DASmap DASrealign REPcover REPqv REPtrim /build/reproducible-path/dascrubber-1.1/debian/dascrubber/usr/bin make[2]: Leaving directory '/build/reproducible-path/dascrubber-1.1' mkdir -p /build/reproducible-path/dascrubber-1.1/debian/dascrubber/usr/share/man/man1 for command in /build/reproducible-path/dascrubber-1.1/debian/dascrubber/usr/bin/*; \ do \ ln -s dascrubber.1 \ /build/reproducible-path/dascrubber-1.1/debian/dascrubber/usr/share/man/man1/$(basename $command).1; \ done make[1]: Leaving directory '/build/reproducible-path/dascrubber-1.1' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dascrubber' in '../dascrubber_1.1-4_amd64.deb'. dpkg-deb: building package 'dascrubber-dbgsym' in '../dascrubber-dbgsym_1.1-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../dascrubber_1.1-4_amd64.buildinfo dpkg-genchanges --build=binary -O../dascrubber_1.1-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3427408 and its subdirectories I: Current time: Sun Feb 23 05:58:53 -12 2025 I: pbuilder-time-stamp: 1740333533 Sun Feb 23 17:58:54 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sun Feb 23 17:58:54 UTC 2025 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sun Feb 23 17:59:43 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sun Feb 23 17:59:43 UTC 2025 I: dascrubber_1.1-4_amd64.changes: Format: 1.8 Date: Wed, 01 Sep 2021 15:33:47 +0200 Source: dascrubber Binary: dascrubber dascrubber-dbgsym Architecture: amd64 Version: 1.1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dascrubber - alignment-based scrubbing pipeline for DNA sequencing reads Changes: dascrubber (1.1-4) unstable; urgency=medium . * Really fix watch file Checksums-Sha1: d7e2437404681a7b13c9a6f14c81a2e02a184d43 1526480 dascrubber-dbgsym_1.1-4_amd64.deb 7faa0e138a94a7ca09e65764ce7c5601cc765cad 4878 dascrubber_1.1-4_amd64.buildinfo 4a78f3343a5fb09fdfab3944a527d05d9f1cc49b 179852 dascrubber_1.1-4_amd64.deb Checksums-Sha256: f342a514bc08ec4e4c325a79ba88ef98d2055e5f845bf43b85e333470c59cbb9 1526480 dascrubber-dbgsym_1.1-4_amd64.deb 1e4beee294474692afda925b481629de24e25102af633a8bcb37b1063ec2ffec 4878 dascrubber_1.1-4_amd64.buildinfo af2ee56054759e0b1bf4a0057049a406cb44939ddc0200bd9719ff0580aabe20 179852 dascrubber_1.1-4_amd64.deb Files: b79f508b944980a32ba6c86b9dca04d9 1526480 debug optional dascrubber-dbgsym_1.1-4_amd64.deb b19cc36572940e20920b8019937be567 4878 science optional dascrubber_1.1-4_amd64.buildinfo c336a41716f05f659eabbffe1a3465b2 179852 science optional dascrubber_1.1-4_amd64.deb Sun Feb 23 17:59:44 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_13-33303.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.XIHudaqs/dascrubber_1.1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.XIHudaqs/dascrubber_1.1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.XIHudaqs/dascrubber_1.1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.XIHudaqs/b1/dascrubber_1.1-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.XIHudaqs/b2/dascrubber_1.1-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 251ms CPU time consumed: 252ms Sun Feb 23 17:59:45 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Sun Feb 23 17:59:45 UTC 2025 I: dascrubber from trixie built successfully and reproducibly on amd64. Sun Feb 23 17:59:46 UTC 2025 I: Submitting .buildinfo files to external archives: Sun Feb 23 17:59:46 UTC 2025 I: Submitting 8.0K b1/dascrubber_1.1-4_amd64.buildinfo.asc Sun Feb 23 17:59:47 UTC 2025 I: Submitting 8.0K b2/dascrubber_1.1-4_amd64.buildinfo.asc Sun Feb 23 17:59:47 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Feb 23 17:59:47 UTC 2025 I: Done submitting .buildinfo files. Sun Feb 23 17:59:47 UTC 2025 I: Removing signed dascrubber_1.1-4_amd64.buildinfo.asc files: removed './b1/dascrubber_1.1-4_amd64.buildinfo.asc' removed './b2/dascrubber_1.1-4_amd64.buildinfo.asc'