Sun Mar 2 07:13:17 UTC 2025 I: starting to build ecopcr/trixie/amd64 on jenkins on '2025-03-02 07:12' Sun Mar 2 07:13:17 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_37/52915/console.log Sun Mar 2 07:13:17 UTC 2025 I: Downloading source for trixie/ecopcr=1.0.1+dfsg-5 --2025-03-02 07:13:17-- http://deb.debian.org/debian/pool/main/e/ecopcr/ecopcr_1.0.1%2bdfsg-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2196 (2.1K) [text/prs.lines.tag] Saving to: ‘ecopcr_1.0.1+dfsg-5.dsc’ 0K .. 100% 380M=0s 2025-03-02 07:13:17 (380 MB/s) - ‘ecopcr_1.0.1+dfsg-5.dsc’ saved [2196/2196] Sun Mar 2 07:13:17 UTC 2025 I: ecopcr_1.0.1+dfsg-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ecopcr Binary: ecopcr Architecture: any Version: 1.0.1+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://git.metabarcoding.org/obitools/ecopcr/wikis/home Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/ecopcr Vcs-Git: https://salsa.debian.org/med-team/ecopcr.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, zlib1g-dev Package-List: ecopcr deb science optional arch=any Checksums-Sha1: 06d4f44d75e76a0424052456169ca0c8e3e29071 24865220 ecopcr_1.0.1+dfsg.orig.tar.xz 43e960687b37a945c7208f8eadf5c3d6df5fb581 16460 ecopcr_1.0.1+dfsg-5.debian.tar.xz Checksums-Sha256: 90e3027e465f1a05a8204b41cff48b5a7fbc00d8e0dce71602698e7abd1baeda 24865220 ecopcr_1.0.1+dfsg.orig.tar.xz a4e037736ec6b94f787661063a70bc379b0f910e38ab89cde35c234f8ce17e93 16460 ecopcr_1.0.1+dfsg-5.debian.tar.xz Files: 2d68e793f98edf1055a246278370f1f4 24865220 ecopcr_1.0.1+dfsg.orig.tar.xz ac7e4742304cbddfc8e959b5d2fe5bf1 16460 ecopcr_1.0.1+dfsg-5.debian.tar.xz Dgit: cd35bdc84e1998a4791f8a40ed9332e0c08e0655 debian archive/debian/1.0.1+dfsg-5 https://git.dgit.debian.org/ecopcr -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmaSuIcUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqf0g/+N/QPozEVcIA8zMUFBcp/ikW3WjMZ AFdR2+DSaqg82a+2YZeWtxFQzflvTnm+/V4T4CKZWRFOQ8e+ceWQr8QMbJMPEDdk AfvlRSnbRaor70+s+WY2JF1MiSukkZQQKEzlNOpaAU27Mfnz5LXl8JwByrDEDSQ6 yOdMQv9DSlOHwO9xMAExaRskO2pc52cR2wbvLPwvqSJm8mdrLm/YMi42L3xPZhtY ACGoA4HM3V5x3t1YBYDMx781bzAZo7atlM8ilHCpcDnqwBcTQ78p75Qw9nSSTl65 OUHFDjuSNPQCAnq5swxiWCo3VxBcpRMMXbGf0PV3EzC5iZHIDuAkYZBsZcCEvsHx RTYUk5YUtNxbjN54zQgbg9jMyISoLrQjlkCOijyI9TIiH+Y4owKxbwF8GSv7Vq2e aYzJTiigZ5/tM/VVwCmpDci2T2+/B9Tw0g1EgRtRPNRIx5Ur4STcC9fdtWK47EvU hBmMATvtYDkRz7+Do+oYrOQwWSPfz9ojjd8WrJNm94UlvW9pL4rJlfBM0IRZZldG 30K932U5B5Cp42RqDCsJ8nKsRsrFXc+6wEHomBQ94XeqcFHRv5XGjAsVDAKh5f38 JvUYFS81uMkbmfB8lUYjCzucFn/BqHpXPPAapIZp3V6vJ965sC+INXwmao54pBJz U4isRVJMJCj3F3g= =pFWj -----END PGP SIGNATURE----- Sun Mar 2 07:13:17 UTC 2025 I: Checking whether the package is not for us Sun Mar 2 07:13:17 UTC 2025 I: Starting 1st build on remote node infom01-amd64.debian.net. Sun Mar 2 07:13:17 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Sun Mar 2 07:14:59 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Mar 1 19:13:19 -12 2025 I: pbuilder-time-stamp: 1740899599 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ecopcr_1.0.1+dfsg-5.dsc] I: copying [./ecopcr_1.0.1+dfsg.orig.tar.xz] I: copying [./ecopcr_1.0.1+dfsg-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ecopcr_1.0.1+dfsg-5.dsc: unsupported subcommand dpkg-source: info: extracting ecopcr in ecopcr-1.0.1+dfsg dpkg-source: info: unpacking ecopcr_1.0.1+dfsg.orig.tar.xz dpkg-source: info: unpacking ecopcr_1.0.1+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying ecoisundertaxon.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1902484/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='fa8856a1ac90404d9bd83f6e38468876' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1902484' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.D8rUA2DP/pbuilderrc_n3MJ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.D8rUA2DP/b1 --logfile b1/build.log ecopcr_1.0.1+dfsg-5.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-31-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1902484/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19802 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 57 newly installed, 0 to remove and 0 not upgraded. Need to get 29.3 MB of archives. After unpacking 111 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.2-1 [27.1 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 12.0.0 [28.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.2-1 [10.0 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.2-1 [28.1 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 36 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.8.0-1 [724 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 29.3 MB in 0s (97.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19802 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_amd64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:amd64 (3.13.2-1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20136 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-1_amd64.deb ... Unpacking python3-minimal (3.13.2-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_12.0.0_all.deb ... Unpacking media-types (12.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.2-1) ... Setting up python3-minimal (3.13.2-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21146 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.2-1_amd64.deb ... Unpacking python3 (3.13.2-1) ... Selecting previously unselected package sensible-utils. 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Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b2) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up libpython3-stdlib:amd64 (3.13.2-1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.2-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up debhelper (13.24.1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up dh-python (6.20250108) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ecopcr-1.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ecopcr_1.0.1+dfsg-5_source.changes dpkg-buildpackage: info: source package ecopcr dpkg-buildpackage: info: source version 1.0.1+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=src --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg' dh_auto_clean cd src && make -j12 clean make[2]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src' rm -f *.o rm -f ecoPCR ecofind ecogrep ecoisundertaxon make -C libapat clean make[3]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libapat' rm -rf apat_parse.o apat_search.o libstki.o libapat.a make[3]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libapat' make -C libecoPCR clean make[3]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libecoPCR' rm -rf ecoapat.o ecodna.o ecoError.o ecoIOUtils.o ecoMalloc.o ecorank.o ecoseq.o ecotax.o ecofilter.o econame.o libecoPCR.a make[3]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libecoPCR' make -C libthermo clean make[3]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libthermo' rm -rf nnparams.o libthermo.a make[3]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libthermo' make[2]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src' find . -type f -name "*.P" -delete make[1]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary dh binary --sourcedirectory=src --with python3 dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src dh_auto_build -O--sourcedirectory=src cd src && make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src' gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecopcr.d ecopcr.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecofind.d ecofind.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoisundertaxon.d ecoisundertaxon.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecopcr.o ecopcr.c make -C libapat make -C libecoPCR make -C libthermo gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecofind.o ecofind.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecogrep.o ecogrep.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoisundertaxon.o ecoisundertaxon.c make[2]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libapat' gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o apat_parse.d apat_parse.c make[2]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libecoPCR' gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoapat.d ecoapat.c make[2]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libthermo' gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o nnparams.d nnparams.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o apat_search.d apat_search.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecodna.d ecodna.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoError.d ecoError.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o libstki.d libstki.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoIOUtils.d ecoIOUtils.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoMalloc.d ecoMalloc.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecorank.d ecorank.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoseq.d ecoseq.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecotax.d ecotax.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecofilter.d ecofilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o nnparams.o nnparams.c gcc -M -Wdate-time -D_FORTIFY_SOURCE=2 -o econame.d econame.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apat_parse.o apat_parse.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o apat_search.o apat_search.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o libstki.o libstki.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoapat.o ecoapat.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecodna.o ecodna.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoError.o ecoError.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoIOUtils.o ecoIOUtils.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoMalloc.o ecoMalloc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecorank.o ecorank.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecoseq.o ecoseq.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecotax.o ecotax.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ecofilter.o ecofilter.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ecopcr-1.0.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -w -O3 -w -Wdate-time -D_FORTIFY_SOURCE=2 -c -o econame.o econame.c ar -cr libapat.a apat_parse.o apat_search.o libstki.o ranlib libapat.a make[2]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libapat' ar -cr libecoPCR.a ecoapat.o ecodna.o ecoError.o ecoIOUtils.o ecoMalloc.o ecorank.o ecoseq.o ecotax.o ecofilter.o econame.o ranlib libecoPCR.a make[2]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libecoPCR' ar -cr libthermo.a nnparams.o ranlib libthermo.a make[2]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src/libthermo' gcc -Wl,-z,relro -Wl,-z,now -o ecoPCR ecopcr.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm gcc -Wl,-z,relro -Wl,-z,now -o ecofind ecofind.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm gcc -Wl,-z,relro -Wl,-z,now -o ecogrep ecogrep.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm gcc -Wl,-z,relro -Wl,-z,now -o ecoisundertaxon ecoisundertaxon.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm make[1]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg/src' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_auto_install --destdir=debian/ecopcr/ -O--sourcedirectory=src debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/ecopcr-1.0.1+dfsg' dh_install for tool in tools/* ; do \ cp -a ${tool} debian/ecopcr/usr/bin/`basename ${tool} .py` ; \ done make[1]: Leaving directory '/build/reproducible-path/ecopcr-1.0.1+dfsg' dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_python3 -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'ecopcr-dbgsym' in '../ecopcr-dbgsym_1.0.1+dfsg-5_amd64.deb'. dpkg-deb: building package 'ecopcr' in '../ecopcr_1.0.1+dfsg-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ecopcr_1.0.1+dfsg-5_amd64.buildinfo dpkg-genchanges --build=binary -O../ecopcr_1.0.1+dfsg-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1902484 and its subdirectories I: Current time: Sat Mar 1 19:14:58 -12 2025 I: pbuilder-time-stamp: 1740899698 Sun Mar 2 07:15:00 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Sun Mar 2 07:15:00 UTC 2025 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Sun Mar 2 07:16:12 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. Sun Mar 2 07:16:13 UTC 2025 I: ecopcr_1.0.1+dfsg-5_amd64.changes: Format: 1.8 Date: Sat, 13 Jul 2024 19:16:09 +0200 Source: ecopcr Binary: ecopcr ecopcr-dbgsym Architecture: amd64 Version: 1.0.1+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: ecopcr - estimate PCR barcode primers quality Closes: 1074930 Changes: ecopcr (1.0.1+dfsg-5) unstable; urgency=medium . * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. * gcc-14.patch: new: fix build failure with Gcc 14. (Closes: #1074930) Checksums-Sha1: bf04643c79f6a2cf1f77f3b24476fbc8c1787d14 145096 ecopcr-dbgsym_1.0.1+dfsg-5_amd64.deb 8e8a4f986555d042e423a0871b2551a9db859e27 5804 ecopcr_1.0.1+dfsg-5_amd64.buildinfo ae249e3616177a69aec411a0e25ffd7600076130 58852 ecopcr_1.0.1+dfsg-5_amd64.deb Checksums-Sha256: 7612e93bc4662b6c569b3e4fdb1d420ff8b1b4525d6aca2f9a0655dd15d8de76 145096 ecopcr-dbgsym_1.0.1+dfsg-5_amd64.deb 18ec6b0cf87a3178a8e093e34d43ca670f3f9841c23142fc78422c94cfb5cb11 5804 ecopcr_1.0.1+dfsg-5_amd64.buildinfo 4e9718812d34e5ffc0aa900c4f595136a5091316fcc41db8a2e3e1c5d0686894 58852 ecopcr_1.0.1+dfsg-5_amd64.deb Files: d5180841c9add3227f0a4d07f7ceaad9 145096 debug optional ecopcr-dbgsym_1.0.1+dfsg-5_amd64.deb 5f6d513dd4a49c15fdcd5fb672301248 5804 science optional ecopcr_1.0.1+dfsg-5_amd64.buildinfo f3279b190d7f0a563c2f4466a64e0e25 58852 science optional ecopcr_1.0.1+dfsg-5_amd64.deb Sun Mar 2 07:16:14 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_37-52915.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.D8rUA2DP/ecopcr_1.0.1+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.D8rUA2DP/ecopcr_1.0.1+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.D8rUA2DP/ecopcr_1.0.1+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.D8rUA2DP/b1/ecopcr_1.0.1+dfsg-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.D8rUA2DP/b2/ecopcr_1.0.1+dfsg-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 230ms CPU time consumed: 231ms Sun Mar 2 07:16:14 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Sun Mar 2 07:16:14 UTC 2025 I: ecopcr from trixie built successfully and reproducibly on amd64. Sun Mar 2 07:16:15 UTC 2025 I: Submitting .buildinfo files to external archives: Sun Mar 2 07:16:15 UTC 2025 I: Submitting 8.0K b1/ecopcr_1.0.1+dfsg-5_amd64.buildinfo.asc Sun Mar 2 07:16:16 UTC 2025 I: Submitting 8.0K b2/ecopcr_1.0.1+dfsg-5_amd64.buildinfo.asc Sun Mar 2 07:16:17 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Mar 2 07:16:17 UTC 2025 I: Done submitting .buildinfo files. Sun Mar 2 07:16:17 UTC 2025 I: Removing signed ecopcr_1.0.1+dfsg-5_amd64.buildinfo.asc files: removed './b1/ecopcr_1.0.1+dfsg-5_amd64.buildinfo.asc' removed './b2/ecopcr_1.0.1+dfsg-5_amd64.buildinfo.asc'