Fri Feb 28 13:34:40 UTC 2025 I: starting to build kalign/trixie/amd64 on jenkins on '2025-02-28 13:34'
Fri Feb 28 13:34:40 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_23/48419/console.log
Fri Feb 28 13:34:40 UTC 2025 I: Downloading source for trixie/kalign=1:3.4.0-1
--2025-02-28 13:34:40-- http://deb.debian.org/debian/pool/main/k/kalign/kalign_3.4.0-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 1962 (1.9K) [text/prs.lines.tag]
Saving to: ‘kalign_3.4.0-1.dsc’
0K . 100% 347M=0s
2025-02-28 13:34:40 (347 MB/s) - ‘kalign_3.4.0-1.dsc’ saved [1962/1962]
Fri Feb 28 13:34:40 UTC 2025 I: kalign_3.4.0-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: kalign
Binary: kalign
Architecture: any
Version: 1:3.4.0-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>, Andreas Tille <tille@debian.org>
Homepage: https://msa.sbc.su.se/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/kalign
Vcs-Git: https://salsa.debian.org/med-team/kalign.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake
Package-List:
kalign deb science optional arch=any
Checksums-Sha1:
3a843c18bd6337b80b373815e2ec4b73ce53f3ab 903277 kalign_3.4.0.orig.tar.gz
580fd65a94ca1e2cc4bcd70588708fa680c5195f 12372 kalign_3.4.0-1.debian.tar.xz
Checksums-Sha256:
67d1a562d54b3b7622cc3164588c05b9e2bf8f1a5140bb48a4e816c61a87d4a8 903277 kalign_3.4.0.orig.tar.gz
83643a83685ef7b3da11348ccb6d3b5c22478547b46a8b88288530a6c00cf8bc 12372 kalign_3.4.0-1.debian.tar.xz
Files:
52243b10203d6ce97ade643638571c1e 903277 kalign_3.4.0.orig.tar.gz
6a79c99575fec3b663aa9b0ce68b277e 12372 kalign_3.4.0-1.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=OLrO
-----END PGP SIGNATURE-----
Fri Feb 28 13:34:40 UTC 2025 I: Checking whether the package is not for us
Fri Feb 28 13:34:40 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net.
Fri Feb 28 13:34:40 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net.
Fri Feb 28 14:19:26 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Fri Feb 28 01:34:43 -12 2025
I: pbuilder-time-stamp: 1740749683
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [kalign_3.4.0-1.dsc]
I: copying [./kalign_3.4.0.orig.tar.gz]
I: copying [./kalign_3.4.0-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./kalign_3.4.0-1.dsc: unsupported subcommand
dpkg-source: info: extracting kalign in kalign-3.4.0
dpkg-source: info: unpacking kalign_3.4.0.orig.tar.gz
dpkg-source: info: unpacking kalign_3.4.0-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2863268/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='5ecabda6f8154cff9e91b4dc7576fe58'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2863268'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Mf9kCsPa/pbuilderrc_hsvY --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Mf9kCsPa/b1 --logfile b1/build.log kalign_3.4.0-1.dsc'
SUDO_GID='111'
SUDO_UID='106'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2863268/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libsimde-dev, cmake
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19802 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libsimde-dev; however:
Package libsimde-dev is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget
0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded.
Need to get 41.2 MB of archives. After unpacking 158 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB]
Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB]
Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB]
Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 13 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get: 14 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB]
Get: 15 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 16 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB]
Get: 17 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 18 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.5-2 [2267 kB]
Get: 19 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 20 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB]
Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB]
Get: 22 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get: 23 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB]
Get: 24 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB]
Get: 25 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB]
Get: 26 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get: 27 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB]
Get: 28 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB]
Get: 29 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 30 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB]
Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB]
Get: 32 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB]
Get: 33 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB]
Get: 34 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get: 35 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB]
Get: 36 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get: 37 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get: 38 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get: 39 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get: 40 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get: 41 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get: 42 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get: 43 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB]
Get: 44 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 45 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB]
Get: 46 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB]
Get: 47 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB]
Get: 48 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.5-2 [12.0 MB]
Get: 49 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 50 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB]
Get: 51 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 52 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 53 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 54 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 55 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 56 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 57 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 58 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 59 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 60 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB]
Get: 61 http://deb.debian.org/debian trixie/main amd64 libsimde-dev all 0.8.2-2 [467 kB]
Fetched 41.2 MB in 15s (2802 kB/s)
Preconfiguring packages ...
Selecting previously unselected package libproc2-0:amd64.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19802 files and directories currently installed.)
Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ...
Unpacking libproc2-0:amd64 (2:4.0.4-7) ...
Selecting previously unselected package procps.
Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ...
Unpacking procps (2:4.0.4-7) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:amd64.
Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../06-gettext-base_0.23.1-1_amd64.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../08-groff-base_1.23.0-7_amd64.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../09-bsdextrautils_2.40.4-4_amd64.deb ...
Unpacking bsdextrautils (2.40.4-4) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../12-m4_1.4.19-5_amd64.deb ...
Unpacking m4 (1.4.19-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../13-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../15-automake_1%3a1.17-3_all.deb ...
Unpacking automake (1:1.17-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../16-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../17-cmake-data_3.31.5-2_all.deb ...
Unpacking cmake-data (3.31.5-2) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../18-libicu72_72.1-6_amd64.deb ...
Unpacking libicu72:amd64 (72.1-6) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.2+b2_amd64.deb ...
Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b2) ...
Selecting previously unselected package libarchive13t64:amd64.
Preparing to unpack .../20-libarchive13t64_3.7.4-1.1_amd64.deb ...
Unpacking libarchive13t64:amd64 (3.7.4-1.1) ...
Selecting previously unselected package libbrotli1:amd64.
Preparing to unpack .../21-libbrotli1_1.1.0-2+b7_amd64.deb ...
Unpacking libbrotli1:amd64 (1.1.0-2+b7) ...
Selecting previously unselected package libkrb5support0:amd64.
Preparing to unpack .../22-libkrb5support0_1.21.3-4_amd64.deb ...
Unpacking libkrb5support0:amd64 (1.21.3-4) ...
Selecting previously unselected package libcom-err2:amd64.
Preparing to unpack .../23-libcom-err2_1.47.2-1_amd64.deb ...
Unpacking libcom-err2:amd64 (1.47.2-1) ...
Selecting previously unselected package libk5crypto3:amd64.
Preparing to unpack .../24-libk5crypto3_1.21.3-4_amd64.deb ...
Unpacking libk5crypto3:amd64 (1.21.3-4) ...
Selecting previously unselected package libkeyutils1:amd64.
Preparing to unpack .../25-libkeyutils1_1.6.3-4_amd64.deb ...
Unpacking libkeyutils1:amd64 (1.6.3-4) ...
Selecting previously unselected package libkrb5-3:amd64.
Preparing to unpack .../26-libkrb5-3_1.21.3-4_amd64.deb ...
Unpacking libkrb5-3:amd64 (1.21.3-4) ...
Selecting previously unselected package libgssapi-krb5-2:amd64.
Preparing to unpack .../27-libgssapi-krb5-2_1.21.3-4_amd64.deb ...
Unpacking libgssapi-krb5-2:amd64 (1.21.3-4) ...
Selecting previously unselected package libunistring5:amd64.
Preparing to unpack .../28-libunistring5_1.3-1_amd64.deb ...
Unpacking libunistring5:amd64 (1.3-1) ...
Selecting previously unselected package libidn2-0:amd64.
Preparing to unpack .../29-libidn2-0_2.3.7-2+b1_amd64.deb ...
Unpacking libidn2-0:amd64 (2.3.7-2+b1) ...
Selecting previously unselected package libsasl2-modules-db:amd64.
Preparing to unpack .../30-libsasl2-modules-db_2.1.28+dfsg1-8+b1_amd64.deb ...
Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ...
Selecting previously unselected package libsasl2-2:amd64.
Preparing to unpack .../31-libsasl2-2_2.1.28+dfsg1-8+b1_amd64.deb ...
Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ...
Selecting previously unselected package libldap2:amd64.
Preparing to unpack .../32-libldap2_2.6.9+dfsg-1_amd64.deb ...
Unpacking libldap2:amd64 (2.6.9+dfsg-1) ...
Selecting previously unselected package libnghttp2-14:amd64.
Preparing to unpack .../33-libnghttp2-14_1.64.0-1_amd64.deb ...
Unpacking libnghttp2-14:amd64 (1.64.0-1) ...
Selecting previously unselected package libnghttp3-9:amd64.
Preparing to unpack .../34-libnghttp3-9_1.6.0-2_amd64.deb ...
Unpacking libnghttp3-9:amd64 (1.6.0-2) ...
Selecting previously unselected package libpsl5t64:amd64.
Preparing to unpack .../35-libpsl5t64_0.21.2-1.1+b1_amd64.deb ...
Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Selecting previously unselected package libffi8:amd64.
Preparing to unpack .../36-libffi8_3.4.7-1_amd64.deb ...
Unpacking libffi8:amd64 (3.4.7-1) ...
Selecting previously unselected package libp11-kit0:amd64.
Preparing to unpack .../37-libp11-kit0_0.25.5-3_amd64.deb ...
Unpacking libp11-kit0:amd64 (0.25.5-3) ...
Selecting previously unselected package libtasn1-6:amd64.
Preparing to unpack .../38-libtasn1-6_4.20.0-2_amd64.deb ...
Unpacking libtasn1-6:amd64 (4.20.0-2) ...
Selecting previously unselected package libgnutls30t64:amd64.
Preparing to unpack .../39-libgnutls30t64_3.8.9-2_amd64.deb ...
Unpacking libgnutls30t64:amd64 (3.8.9-2) ...
Selecting previously unselected package librtmp1:amd64.
Preparing to unpack .../40-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ...
Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssh2-1t64:amd64.
Preparing to unpack .../41-libssh2-1t64_1.11.1-1_amd64.deb ...
Unpacking libssh2-1t64:amd64 (1.11.1-1) ...
Selecting previously unselected package libcurl4t64:amd64.
Preparing to unpack .../42-libcurl4t64_8.12.1-2_amd64.deb ...
Unpacking libcurl4t64:amd64 (8.12.1-2) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../43-libexpat1_2.6.4-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.6.4-1) ...
Selecting previously unselected package libjsoncpp26:amd64.
Preparing to unpack .../44-libjsoncpp26_1.9.6-3_amd64.deb ...
Unpacking libjsoncpp26:amd64 (1.9.6-3) ...
Selecting previously unselected package librhash1:amd64.
Preparing to unpack .../45-librhash1_1.4.5-1_amd64.deb ...
Unpacking librhash1:amd64 (1.4.5-1) ...
Selecting previously unselected package libuv1t64:amd64.
Preparing to unpack .../46-libuv1t64_1.50.0-2_amd64.deb ...
Unpacking libuv1t64:amd64 (1.50.0-2) ...
Selecting previously unselected package cmake.
Preparing to unpack .../47-cmake_3.31.5-2_amd64.deb ...
Unpacking cmake (3.31.5-2) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../48-libdebhelper-perl_13.24.1_all.deb ...
Unpacking libdebhelper-perl (13.24.1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../49-libtool_2.5.4-3_all.deb ...
Unpacking libtool (2.5.4-3) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../50-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../51-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../52-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../53-dh-strip-nondeterminism_1.14.1-2_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.1-2) ...
Selecting previously unselected package libelf1t64:amd64.
Preparing to unpack .../54-libelf1t64_0.192-4_amd64.deb ...
Unpacking libelf1t64:amd64 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../55-dwz_0.15-1+b1_amd64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../56-gettext_0.23.1-1_amd64.deb ...
Unpacking gettext (0.23.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../57-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../58-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../59-debhelper_13.24.1_all.deb ...
Unpacking debhelper (13.24.1) ...
Selecting previously unselected package libsimde-dev.
Preparing to unpack .../60-libsimde-dev_0.8.2-2_all.deb ...
Unpacking libsimde-dev (0.8.2-2) ...
Setting up libexpat1:amd64 (2.6.4-1) ...
Setting up libpipeline1:amd64 (1.5.8-1) ...
Setting up libsimde-dev (0.8.2-2) ...
Setting up libkeyutils1:amd64 (1.6.3-4) ...
Setting up libicu72:amd64 (72.1-6) ...
Setting up bsdextrautils (2.40.4-4) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.24.1) ...
Setting up libbrotli1:amd64 (1.1.0-2+b7) ...
Setting up libuv1t64:amd64 (1.50.0-2) ...
Setting up libmagic1t64:amd64 (1:5.45-3+b1) ...
Setting up libnghttp2-14:amd64 (1.64.0-1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
Setting up libcom-err2:amd64 (1.47.2-1) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:amd64 (0.192-4) ...
Setting up libkrb5support0:amd64 (1.21.3-4) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libjsoncpp26:amd64 (1.9.6-3) ...
Setting up libproc2-0:amd64 (2:4.0.4-7) ...
Setting up libunistring5:amd64 (1.3-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up libk5crypto3:amd64 (1.21.3-4) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ...
Setting up autoconf (2.72-3) ...
Setting up libnghttp3-9:amd64 (1.6.0-2) ...
Setting up libffi8:amd64 (3.4.7-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:amd64 (0.0.8-1+b2) ...
Setting up procps (2:4.0.4-7) ...
Setting up libtasn1-6:amd64 (4.20.0-2) ...
Setting up cmake-data (3.31.5-2) ...
Setting up librhash1:amd64 (1.4.5-1) ...
Setting up libkrb5-3:amd64 (1.21.3-4) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b2) ...
Setting up libldap2:amd64 (2.6.9+dfsg-1) ...
Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up gettext (0.23.1-1) ...
Setting up libtool (2.5.4-3) ...
Setting up libidn2-0:amd64 (2.3.7-2+b1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libp11-kit0:amd64 (0.25.5-3) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up groff-base (1.23.0-7) ...
Setting up libarchive13t64:amd64 (3.7.4-1.1) ...
Setting up libgnutls30t64:amd64 (3.8.9-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libcurl4t64:amd64 (8.12.1-2) ...
Setting up debhelper (13.24.1) ...
Setting up cmake (3.31.5-2) ...
Processing triggers for libc-bin (2.40-7) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kalign_3.4.0-1_source.changes
dpkg-buildpackage: info: source package kalign
dpkg-buildpackage: info: source version 1:3.4.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0'
dh_auto_configure -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=OFF -DENABLE_AVX=OFF -DENABLE_AVX2=OFF
cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=OFF -DENABLE_AVX=OFF -DENABLE_AVX2=OFF ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- OpenMP is enabled.
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
--
-- Configuration:
-- --------------------------------------
-- Build type : None
-- Compiler flags :
-- Compiler c debug flags : -g
-- Compiler c release flags : -O3 -DNDEBUG
-- Compiler c min size flags : -Os -DNDEBUG
-- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2
-- OpenMP version : 4.5
-- OpenMP flags : -fopenmp
-- Configuring done (14.2s)
-- Generating done (0.7s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
FETCHCONTENT_FULLY_DISCONNECTED
INSTALL_PREFIX
-- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu
dh_auto_configure --builddirectory obj-sse4.1 -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=OFF -DENABLE_AVX2=OFF
cd obj-sse4.1 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=OFF -DENABLE_AVX2=OFF ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- OpenMP is enabled.
-- Performing Test HAVE_SSE
-- Performing Test HAVE_SSE - Success
-- SSE4.1 is enabled - target CPU must support it
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
--
-- Configuration:
-- --------------------------------------
-- Build type : None
-- Compiler flags :
-- Compiler c debug flags : -g
-- Compiler c release flags : -O3 -DNDEBUG
-- Compiler c min size flags : -Os -DNDEBUG
-- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2
-- OpenMP version : 4.5
-- OpenMP flags : -fopenmp
-- Configuring done (13.2s)
-- Generating done (0.8s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
FETCHCONTENT_FULLY_DISCONNECTED
INSTALL_PREFIX
-- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-sse4.1
dh_auto_configure --builddirectory obj-avx -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=OFF
cd obj-avx && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=OFF ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- OpenMP is enabled.
-- Performing Test HAVE_SSE
-- Performing Test HAVE_SSE - Success
-- SSE4.1 is enabled - target CPU must support it
-- Performing Test HAVE_AVX
-- Performing Test HAVE_AVX - Success
-- AVX is enabled - target CPU must support it
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
--
-- Configuration:
-- --------------------------------------
-- Build type : None
-- Compiler flags :
-- Compiler c debug flags : -g
-- Compiler c release flags : -O3 -DNDEBUG
-- Compiler c min size flags : -Os -DNDEBUG
-- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2
-- OpenMP version : 4.5
-- OpenMP flags : -fopenmp
-- Configuring done (20.5s)
-- Generating done (0.4s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
FETCHCONTENT_FULLY_DISCONNECTED
INSTALL_PREFIX
-- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-avx
dh_auto_configure --builddirectory obj-avx2 -- -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=ON
cd obj-avx2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=OFF -DINSTALL_PREFIX=/usr -DENABLE_SSE=ON -DENABLE_AVX=ON -DENABLE_AVX2=ON ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- OpenMP is enabled.
-- Performing Test HAVE_SSE
-- Performing Test HAVE_SSE - Success
-- SSE4.1 is enabled - target CPU must support it
-- Performing Test HAVE_AVX
-- Performing Test HAVE_AVX - Success
-- AVX is enabled - target CPU must support it
-- Performing Test HAVE_AVX2
-- Performing Test HAVE_AVX2 - Success
-- AVX2 is enabled - target CPU must support it
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
--
-- Configuration:
-- --------------------------------------
-- Build type : None
-- Compiler flags :
-- Compiler c debug flags : -g
-- Compiler c release flags : -O3 -DNDEBUG
-- Compiler c min size flags : -Os -DNDEBUG
-- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2
-- OpenMP version : 4.5
-- OpenMP flags : -fopenmp
-- Configuring done (27.7s)
-- Generating done (0.6s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
FETCHCONTENT_FULLY_DISCONNECTED
INSTALL_PREFIX
-- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-avx2
make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0'
dh_auto_build
cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color="
make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color="
make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build
make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build
[ 1%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o
[ 2%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
[ 4%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
[ 5%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
[ 6%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build
[ 8%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
[ 10%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o
[ 12%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o
[ 9%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
[ 13%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o
[ 14%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o
[ 16%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c
[ 17%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o
[ 18%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
[ 21%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o
[ 21%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o
[ 22%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
[ 24%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c
[ 25%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
[ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c
[ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c
[ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c
[ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c
[ 32%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
[ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c
[ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
[ 36%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c
[ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c
/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks':
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
94 | fscanf( f_ptr, "%d", &n_tasks);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c
[ 43%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
[ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c
[ 45%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
[ 47%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c
[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c
/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main':
/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable]
58 | float d2;
| ^~
[ 50%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c
[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o
[ 54%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c
/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks':
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
94 | fscanf( f_ptr, "%d", &n_tasks);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c
[ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o
[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c
[ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c
[ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c
[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c
[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c
[ 66%] Linking C executable alphabet_utest
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1
[ 67%] Linking C static library libtldevel.a
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
/usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
/usr/bin/ranlib libtldevel.a
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
[ 67%] Built target alphabet_utest
[ 67%] Built target tldevel
[ 68%] Linking C executable bpm_utest
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
[ 68%] Built target kalign_OBJ
make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
[ 70%] Linking C executable task_utest
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
[ 71%] Linking C static library libkalign.a
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake
[ 72%] Linking C static library libkalign_static.a
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake
[ 72%] Built target bpm_utest
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1
[ 74%] Linking C executable edist_utest
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
/usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
/usr/bin/ranlib libkalign_static.a
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
/usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
/usr/bin/ranlib libkalign.a
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
[ 74%] Built target kalign_static
[ 74%] Built target task_utest
make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend
[ 74%] Built target kalign
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color="
make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend
make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build
[ 74%] Built target edist_utest
make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
[ 75%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c
[ 77%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c
[ 78%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
[ 79%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp
[ 81%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o
[ 82%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c
[ 83%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c
[ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c
[ 86%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c
[ 87%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c
[ 89%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
[ 90%] Linking C executable kalign_cmp_test
[ 91%] Linking C executable kalign_io_test
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1
[ 93%] Linking C executable kalign_lib_test
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1
[ 94%] Linking C executable kalignfmt
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
[ 94%] Built target kalign_cmp_test
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
[ 95%] Linking C executable kalign
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
[ 95%] Built target kalign_io_test
[ 95%] Built target kalignfmt
[ 97%] Linking C executable largebench
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
[ 97%] Built target kalign-bin
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
[ 97%] Built target kalign_lib_test
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()':
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 97%] Built target largebench
[ 98%] Linking CXX executable kaligncpp
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
[ 98%] Built target kaligncpp
[100%] Linking C executable dssim
cd /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
[100%] Built target dssim
make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
debian/rules execute_after_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0'
dh_auto_build --builddirectory obj-sse4.1
cd obj-sse4.1 && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
/usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-sse4.1/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-sse4.1//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend
make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color="
make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color="
make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend
make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color="
make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build
[ 1%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 2%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
[ 4%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
[ 5%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
[ 9%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c
[ 9%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
[ 12%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o
[ 14%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o
[ 13%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
[ 13%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o
[ 18%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o
[ 18%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
[ 16%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
[ 21%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o
[ 22%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o
[ 21%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o
[ 24%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o
[ 24%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
[ 25%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c
[ 27%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
[ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c
/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks':
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
94 | fscanf( f_ptr, "%d", &n_tasks);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c
[ 31%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
[ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c
[ 33%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
[ 35%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o
[ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
[ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c
[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c
[ 39%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c
[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
[ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
[ 44%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o
/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main':
[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c
/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable]
58 | float d2;
| ^~
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c
/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks':
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
94 | fscanf( f_ptr, "%d", &n_tasks);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c
[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c
[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o
[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c
[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c
[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o
[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c
[ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c
[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c
[ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o
[ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c
[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c
[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c
[ 66%] Linking C static library libtldevel.a
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1
/usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
/usr/bin/ranlib libtldevel.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 66%] Built target tldevel
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 66%] Built target kalign_OBJ
make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color="
make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 67%] Linking C static library libkalign.a
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake
[ 68%] Linking C static library libkalign_static.a
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1
/usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
/usr/bin/ranlib libkalign_static.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
/usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
/usr/bin/ranlib libkalign.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 68%] Built target kalign_static
make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend
[ 68%] Built target kalign
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1 /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build
[ 70%] Linking C executable alphabet_utest
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1
make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build
[ 71%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build
[ 72%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 74%] Linking C executable task_utest
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1
[ 75%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 77%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o
make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c
[ 78%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o
[ 79%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
[ 81%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c
[ 82%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c
[ 83%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp
[ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 86%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c
[ 86%] Built target alphabet_utest
[ 87%] Linking C executable kalign_io_test
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 87%] Built target task_utest
[ 89%] Linking C executable kalign_lib_test
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1
[ 90%] Linking C executable edist_utest
[ 91%] Linking C executable kalign_cmp_test
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 91%] Built target kalign_io_test
[ 91%] Built target kalign_lib_test
[ 93%] Linking C executable kalign
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm
[ 93%] Built target kalign_cmp_test
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 93%] Built target edist_utest
[ 94%] Linking C executable kalignfmt
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 94%] Built target kalign-bin
[ 95%] Linking C executable bpm_utest
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 95%] Built target kalignfmt
[ 95%] Built target bpm_utest
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()':
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 97%] Linking C executable largebench
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1
[ 98%] Linking C executable dssim
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[ 98%] Built target dssim
[ 98%] Built target largebench
[100%] Linking CXX executable kaligncpp
cd /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
[100%] Built target kaligncpp
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-sse4.1/CMakeFiles 0
make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-sse4.1'
dh_auto_build --builddirectory obj-avx
cd obj-avx && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
/usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-avx --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-avx//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color="
make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend
make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color="
make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color="
make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build
make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build
[ 1%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 2%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build
[ 5%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
[ 6%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 6%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o
[ 8%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c
[ 10%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o
[ 9%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o
[ 12%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
[ 13%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o
[ 14%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
[ 17%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c
[ 18%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o
[ 17%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
[ 21%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o
[ 20%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
[ 22%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o
[ 24%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
[ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c
[ 27%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
[ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c
[ 29%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main':
/build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable]
58 | float d2;
| ^~
[ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c
[ 32%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
[ 33%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c
[ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c
[ 36%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
[ 37%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c
[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c
/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks':
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
94 | fscanf( f_ptr, "%d", &n_tasks);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c
[ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
[ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c
[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c
/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks':
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
94 | fscanf( f_ptr, "%d", &n_tasks);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c
[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c
[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c
[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c
[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c
[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c
[ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c
[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o
[ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c
[ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c
[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c
[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c
[ 66%] Linking C executable task_utest
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 66%] Built target task_utest
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 66%] Built target kalign_OBJ
make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color="
make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/lib /build/reproducible-path/kalign-3.4.0/obj-avx/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 67%] Linking C static library libkalign.a
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake
[ 68%] Linking C static library libkalign_static.a
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1
/usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
/usr/bin/ranlib libkalign.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
/usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
/usr/bin/ranlib libkalign_static.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 68%] Built target kalign_static
[ 68%] Built target kalign
make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 70%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c
[ 71%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 72%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c
[ 74%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp
[ 75%] Linking C executable edist_utest
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1
[ 77%] Linking C executable kalign_cmp_test
[ 78%] Linking C executable kalign_io_test
cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1
cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1
[ 79%] Linking C executable kalign_lib_test
cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1
[ 81%] Linking C executable alphabet_utest
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 81%] Built target edist_utest
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 81%] Built target kalign_io_test
[ 81%] Built target kalign_cmp_test
[ 82%] Linking C static library libtldevel.a
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake
[ 83%] Linking C executable bpm_utest
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
cd /build/reproducible-path/kalign-3.4.0/obj-avx/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1
[ 83%] Built target kalign_lib_test
[ 83%] Built target alphabet_utest
/usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
/usr/bin/ranlib libtldevel.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 83%] Built target tldevel
make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/src /build/reproducible-path/kalign-3.4.0/obj-avx/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/src /build/reproducible-path/kalign-3.4.0/obj-avx/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color="
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
cd /build/reproducible-path/kalign-3.4.0/obj-avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx /build/reproducible-path/kalign-3.4.0/obj-avx/tests /build/reproducible-path/kalign-3.4.0/obj-avx/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build
[ 83%] Built target bpm_utest
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c
[ 86%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o
[ 87%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c
[ 89%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c
[ 90%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
[ 91%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c
[ 93%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()':
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 94%] Linking C executable kalign
cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1
[ 95%] Linking C executable kalignfmt
cd /build/reproducible-path/kalign-3.4.0/obj-avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 97%] Linking CXX executable kaligncpp
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[ 97%] Built target kalignfmt
[ 98%] Linking C executable largebench
cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1
[ 98%] Built target kalign-bin
[100%] Linking C executable dssim
cd /build/reproducible-path/kalign-3.4.0/obj-avx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[100%] Built target largebench
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[100%] Built target kaligncpp
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
[100%] Built target dssim
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx/CMakeFiles 0
make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx'
dh_auto_build --builddirectory obj-avx2
cd obj-avx2 && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
/usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-avx2 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx2/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-avx2//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend
make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color="
make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build
make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build
[ 1%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[ 2%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o
[ 4%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o
[ 5%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o
[ 6%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
[ 8%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
[ 9%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
[ 12%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o
[ 13%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o
[ 14%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o
[ 10%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
[ 16%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o
[ 17%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
[ 20%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
[ 21%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o
[ 22%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
[ 24%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
[ 25%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o
[ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
[ 27%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
[ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o
/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks':
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
94 | fscanf( f_ptr, "%d", &n_tasks);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 29%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c
[ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c
[ 32%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
[ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o
[ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c
[ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c
[ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c
[ 39%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
[ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c
[ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c
/build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks':
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
94 | fscanf( f_ptr, "%d", &n_tasks);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
[ 47%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c
[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c
[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c
[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c
[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c
[ 55%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c
[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c
[ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c
[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c
[ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c
[ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o
[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c
[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c
[ 66%] Linking C executable edist_utest
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/edist_utest.dir/link.d CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[ 66%] Built target edist_utest
[ 67%] Linking C executable bpm_utest
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1
[ 68%] Linking C static library libtldevel.a
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bpm_utest.dir/link.d CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1
[ 68%] Built target bpm_utest
[ 70%] Linking C executable alphabet_utest
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1
/usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
/usr/bin/ranlib libtldevel.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[ 70%] Built target tldevel
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/alphabet_utest.dir/link.d CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[ 70%] Built target alphabet_utest
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[ 70%] Built target kalign_OBJ
make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color="
make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/lib /build/reproducible-path/kalign-3.4.0/obj-avx2/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[ 71%] Linking C executable task_utest
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1
[ 72%] Linking C static library libkalign_static.a
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1
[ 74%] Linking C static library libkalign.a
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/task_utest.dir/link.d CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1
[ 74%] Built target task_utest
/usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
/usr/bin/ranlib libkalign_static.a
/usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
/usr/bin/ranlib libkalign.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[ 74%] Built target kalign
make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend
[ 74%] Built target kalign_static
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/src /build/reproducible-path/kalign-3.4.0/obj-avx2/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend
make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color="
make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/src /build/reproducible-path/kalign-3.4.0/obj-avx2/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color="
make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
cd /build/reproducible-path/kalign-3.4.0/obj-avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-avx2 /build/reproducible-path/kalign-3.4.0/obj-avx2/tests /build/reproducible-path/kalign-3.4.0/obj-avx2/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build
make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build
make[4]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[ 75%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c
[ 78%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o
[ 77%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c
[ 81%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o
[ 79%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o
[ 82%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c
[ 83%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c
[ 85%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
[ 86%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o
[ 87%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c
[ 89%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-avx2/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp
[ 90%] Linking C executable kalign_cmp_test
[ 91%] Linking C executable kalign_io_test
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1
[ 93%] Linking C executable kalign_lib_test
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_cmp_test.dir/link.d CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_io_test.dir/link.d CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[ 93%] Built target kalign_cmp_test
[ 93%] Built target kalign_io_test
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign_lib_test.dir/link.d CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[ 93%] Built target kalign_lib_test
[ 94%] Linking C executable kalign
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1
[ 95%] Linking C executable kalignfmt
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalignfmt.dir/link.d CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kalign-bin.dir/link.d "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[ 97%] Linking C executable largebench
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1
[ 97%] Built target kalignfmt
[ 97%] Built target kalign-bin
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/largebench.dir/link.d CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[ 97%] Built target largebench
[ 98%] Linking C executable dssim
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()':
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:11:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
11 | "MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:12:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
12 | "MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1
[100%] Linking CXX executable kaligncpp
cd /build/reproducible-path/kalign-3.4.0/obj-avx2/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dssim.dir/link.d CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[100%] Built target dssim
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -mavx2 -DHAVE_AVX2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kaligncpp.dir/link.d CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
[100%] Built target kaligncpp
make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-avx2/CMakeFiles 0
make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-avx2'
make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0'
dh_auto_test
cd obj-x86_64-linux-gnu && make -j20 test ARGS\+=--verbose ARGS\+=-j20
make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j20
UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl
Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl
UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl
Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/DartConfiguration.tcl
Test project /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
Connected to MAKE jobserver
test 1
Start 1: bpm_utest
1: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/bpm_utest
1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib
1: Test timeout computed to be: 1500
test 2
Start 2: alphabet_utest
2: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/alphabet_utest
2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib
2: Test timeout computed to be: 1500
test 3
Start 3: edist_utest
3: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/edist_utest
3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib
3: Test timeout computed to be: 1500
test 4
Start 4: task_utest
4: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib/task_utest
4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/lib
4: Test timeout computed to be: 1500
test 5
Start 5: C++Lib
5: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/kaligncpp
5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
5: Test timeout computed to be: 1500
test 6
Start 6: kalign_itest_BB11001.tfa
6: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa"
6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
6: Test timeout computed to be: 1500
test 7
Start 7: kalign_itest_BB11001_EOF.msf
7: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf"
7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
7: Test timeout computed to be: 1500
test 8
Start 8: kalign_itest_BB12006.msf
8: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf"
8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
8: Test timeout computed to be: 1500
test 9
Start 9: kalign_itest_BB12006.tfa
9: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa"
9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
9: Test timeout computed to be: 1500
test 10
Start 10: kalign_itest_BB30014.msf
10: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa"
10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
10: Test timeout computed to be: 1500
test 11
Start 11: kalign_itest_BB30014.tfa
11: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa"
11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
11: Test timeout computed to be: 1500
test 12
Start 12: DSSIM_takes_a_min
12: Test command: /build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu/tests/dssim
12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
12: Test timeout computed to be: 1500
1: LEN: 256
1: [2025-02-28 13:44:29] : LOG : Testing correctness of serial bpm.
2: LEN: 21
2: @ -1
2: A 0
2: B 20
2: C 1
2: D 2
2: E 3
2: F 4
2: G 5
2: H 6
2: I 7
2: J -1
2: K 8
2: L 9
2: M 10
2: N 11
2: O -1
2: P 12
2: Q 13
2: R 14
2: S 15
2: T 16
2: U 20
2: V 17
2: W 18
2: X 20
2: Y 19
2: Z 20
2: [ -1
2: \ -1
2: ] -1
2: ^ -1
2: _ -1
2: LEN: 13
2: @ -1
2: A 0
2: B 2
2: C 1
2: D 2
2: E 3
2: F 4
2: G 5
2: H 6
2: I 7
2: J -1
2: K 8
2: L 9
2: M 9
2: N 2
2: O -1
2: P 10
2: Q 3
2: R 8
2: S 0
2: T 0
2: U -1
2: V 7
2: W 11
2: X 12
2: Y 4
2: Z 3
2: [ -1
2: \ -1
2: ] -1
2: ^ -1
2: _ -1
2: LEN: 5
2: @ -1
2: A 0
2: B 4
2: C 1
2: D 4
2: E -1
2: F -1
2: G 2
2: H 4
2: I -1
2: J -1
2: K 4
2: L -1
2: M 4
2: N 4
2: O -1
2: P -1
2: Q -1
2: R 4
2: S 4
2: T 3
2: U 3
2: V 4
2: W 4
2: X -1
2: Y 4
2: Z -1
2: [ -1
2: \ -1
2: ] -1
2: ^ -1
2: _ -1
2: LEN: 6
2: @ -1
2: A 0
2: B 5
2: C 1
2: D 2
2: E 2
2: F 1
2: G 3
2: H 3
2: I 1
2: J -1
2: K 2
2: L 4
2: M 0
2: N 2
2: O -1
2: P 2
2: Q 2
2: R 2
2: S 3
2: T 3
2: U -1
2: V 1
2: W 4
2: X 5
2: Y 4
2: Z 5
2: [ -1
2: \ -1
2: ] -1
2: ^ -1
2: _ -1
3: [2025-02-28 13:44:29] : LOG : Check for correctness.
3: [2025-02-28 13:44:29] : LOG : Timing serial
3: [2025-02-28 13:44:29] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
4: 107 263 66 213 16
4: 75 461 663 460 646
4: 22 41 696 132 739
4: 296 773 867 13 199
4: 829 111 636 278 945
4: 333 818 2 686 97
4: 342 935 943 444 708
4: 883 343 43 334 209
4: 61 506 607 500 270
4: 484 22 514 246 8
4: 177 566 961 872 82
4: 572 820 372 179 155
4: 808 237 492 57 301
4: 990 584 418 72 984
4: 184 824 217 852 936
4: 747 614 962 310 972
4: 911 125 461 667 653
4: 592 863 308 60 732
4: 83 923 325 224 379
4: 689 705 225 617 734
4: 556 515 206 859 324
4: 410 543 729 827 587
4: 508 168 917 677 433
4: 577 788 257 725 269
4: 514 12 557 333 710
4: 652 262 400 115 348
4: 52 84 746 740 556
4: 608 172 176 326 983
4: 644 314 670 45 994
4: 262 748 548 243 775
4: 725 106 127 202 400
4: 831 102 744 954 288
4: 521 192 639 989 692
4: 156 756 317 617 299
4: 657 797 69 469 606
4: 735 134 751 809 472
4: 631 58 870 148 138
4: 734 401 537 353 999
4: 559 82 191 545 946
4: 944 870 571 693 333
4: 819 448 414 679 74
4: 758 610 63 49 254
4: 826 985 366 212 744
4: 662 698 512 211 923
4: 685 34 121 61 891
4: 79 444 405 402 473
4: 107 433 821 389 627
4: 904 762 2 574 445
4: 939 873 975 547 187
4: 875 974 517 294 596
4: 149 834 482 222 702
4: 615 837 149 324 808
4: 707 38 243 562 907
4: 669 816 401 866 794
5: Aligned:
5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE----------
5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
6:
6: Kalign (3.4.0)
6:
6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
6:
6: This program comes with ABSOLUTELY NO WARRANTY; for details type:
6: `kalign -showw'.
6: This is free software, and you are welcome to redistribute it
6: under certain conditions; consult the COPYING file for details.
6:
6: Please cite:
6: Lassmann, Timo.
6: "Kalign 3: multiple sequence alignment of large data sets."
6: Bioinformatics (2019)
6: https://doi.org/10.1093/bioinformatics/btz795
6:
6: [2025-02-28 13:44:29] : LOG : Detected protein sequences.
6: [2025-02-28 13:44:29] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa.
6: [2025-02-28 13:44:29] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
6: [2025-02-28 13:44:29] : LOG : Calculating pairwise distances
6: [2025-02-28 13:44:29] : LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00
6: [2025-02-28 13:44:29] : LOG : Building guide tree.
6: [2025-02-28 13:44:29] : LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00
6: [2025-02-28 13:44:29] : LOG : Aligning
6: [2025-02-28 13:44:29] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
6: >1aab_
6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG
6: KFEDMAKADKARYEREMKTYIPPKGE----------
6: >1j46_A
6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW
6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
6: >1k99_A
6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM
6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
6: >2lef_A
6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA
6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
7:
7: Kalign (3.4.0)
7:
7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
7:
7: This program comes with ABSOLUTELY NO WARRANTY; for details type:
7: `kalign -showw'.
7: This is free software, and you are welcome to redistribute it
7: under certain conditions; consult the COPYING file for details.
7:
7: Please cite:
7: Lassmann, Timo.
7: "Kalign 3: multiple sequence alignment of large data sets."
7: Bioinformatics (2019)
7: https://doi.org/10.1093/bioinformatics/btz795
7:
7: [2025-02-28 13:44:29] : LOG : Detected protein sequences.
7: [2025-02-28 13:44:29] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf.
7: [2025-02-28 13:44:29] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
7: [2025-02-28 13:44:29] : LOG : Calculating pairwise distances
7: [2025-02-28 13:44:29] : LOG : CPU Time: 0.05u 00:00:00.04 Elapsed: 00:00:00.00
7: [2025-02-28 13:44:29] : LOG : Building guide tree.
7: [2025-02-28 13:44:29] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
7: [2025-02-28 13:44:29] : LOG : Aligning
7: [2025-02-28 13:44:29] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
7: >1aab_
7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG
7: KFEDMAKADKARYEREMKTYIPPKGE----------
7: >1j46_A
7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW
7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
7: >1k99_A
7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM
7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
7: >2lef_A
7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA
7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
8:
8: Kalign (3.4.0)
8:
8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
8:
8: This program comes with ABSOLUTELY NO WARRANTY; for details type:
8: `kalign -showw'.
8: This is free software, and you are welcome to redistribute it
8: under certain conditions; consult the COPYING file for details.
8:
8: Please cite:
8: Lassmann, Timo.
8: "Kalign 3: multiple sequence alignment of large data sets."
8: Bioinformatics (2019)
8: https://doi.org/10.1093/bioinformatics/btz795
8:
8: [2025-02-28 13:44:29] : LOG : Detected protein sequences.
8: [2025-02-28 13:44:29] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf.
8: [2025-02-28 13:44:29] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
8: [2025-02-28 13:44:29] : LOG : Calculating pairwise distances
8: [2025-02-28 13:44:29] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00
8: [2025-02-28 13:44:29] : LOG : Building guide tree.
8: [2025-02-28 13:44:29] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
8: [2025-02-28 13:44:29] : LOG : Aligning
8: [2025-02-28 13:44:29] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
8: >1al2_ad
8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ
8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ
8: KA---
8: >1bbt_ac
8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R--
8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF
8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY
8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE--
8: -----
8: >1bev_ac
8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N
8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC
8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG
8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ
8: TAILQ
8: >1mec_ac
8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK--
8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF
8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
8: Q----
9:
9: Kalign (3.4.0)
9:
9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
9:
9: This program comes with ABSOLUTELY NO WARRANTY; for details type:
9: `kalign -showw'.
9: This is free software, and you are welcome to redistribute it
9: under certain conditions; consult the COPYING file for details.
9:
9: Please cite:
9: Lassmann, Timo.
9: "Kalign 3: multiple sequence alignment of large data sets."
9: Bioinformatics (2019)
9: https://doi.org/10.1093/bioinformatics/btz795
9:
9: [2025-02-28 13:44:29] : LOG : Detected protein sequences.
9: [2025-02-28 13:44:29] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
9: [2025-02-28 13:44:29] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
9: [2025-02-28 13:44:29] : LOG : Calculating pairwise distances
9: [2025-02-28 13:44:29] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
9: [2025-02-28 13:44:29] : LOG : Building guide tree.
9: [2025-02-28 13:44:29] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00
9: [2025-02-28 13:44:29] : LOG : Aligning
9: [2025-02-28 13:44:29] : LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00
9: >1al2_ad
9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ
9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ
9: KA---
9: >1bbt_ac
9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R--
9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF
9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY
9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE--
9: -----
9: >1bev_ac
9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N
9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC
9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG
9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ
9: TAILQ
9: >1mec_ac
9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK--
9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF
9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
9: Q----
10:
10: Kalign (3.4.0)
10:
10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
10:
10: This program comes with ABSOLUTELY NO WARRANTY; for details type:
10: `kalign -showw'.
10: This is free software, and you are welcome to redistribute it
10: under certain conditions; consult the COPYING file for details.
10:
10: Please cite:
10: Lassmann, Timo.
10: "Kalign 3: multiple sequence alignment of large data sets."
10: Bioinformatics (2019)
10: https://doi.org/10.1093/bioinformatics/btz795
10:
10: [2025-02-28 13:44:29] : LOG : Detected protein sequences.
10: [2025-02-28 13:44:29] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
10: [2025-02-28 13:44:29] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
10: [2025-02-28 13:44:29] : LOG : Calculating pairwise distances
10: [2025-02-28 13:44:29] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00
10: [2025-02-28 13:44:29] : LOG : Building guide tree.
10: [2025-02-28 13:44:29] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
10: [2025-02-28 13:44:29] : LOG : Aligning
10: [2025-02-28 13:44:29] : LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00
11:
11: Kalign (3.4.0)
11:
11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
11:
11: This program comes with ABSOLUTELY NO WARRANTY; for details type:
11: `kalign -showw'.
11: This is free software, and you are welcome to redistribute it
11: under certain conditions; consult the COPYING file for details.
11:
11: Please cite:
11: Lassmann, Timo.
11: "Kalign 3: multiple sequence alignment of large data sets."
11: Bioinformatics (2019)
11: https://doi.org/10.1093/bioinformatics/btz795
11:
11: [2025-02-28 13:44:29] : LOG : Detected protein sequences.
11: [2025-02-28 13:44:29] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa.
11: [2025-02-28 13:44:29] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
11: [2025-02-28 13:44:29] : LOG : Calculating pairwise distances
11: [2025-02-28 13:44:29] : LOG : CPU Time: 0.05u 00:00:00.04 Elapsed: 00:00:00.00
11: [2025-02-28 13:44:29] : LOG : Building guide tree.
12: [2025-02-28 13:44:29] : LOG : DSSim - a simplistic sequence simulator.
12: [2025-02-28 13:44:29] : LOG : Protein alignments - 20 seq
1/12 Test #2: alphabet_utest ................... Passed 0.36 sec
2/12 Test #3: edist_utest ...................... Passed 0.34 sec
3/12 Test #4: task_utest ....................... Passed 0.32 sec
4/12 Test #5: C++Lib ........................... Passed 0.30 sec
5/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.28 sec
6/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.26 sec
7/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.22 sec
8/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.20 sec
10: >1al2_ad
10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ
10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ
10: KA---
10: >1bbt_ac
10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R--
10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF
10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY
10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE--
10: -----
10: >1bev_ac
10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N
10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC
10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG
10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ
10: TAILQ
10: >1mec_ac
10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK--
10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF
10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
10: Q----
9/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.16 sec
11: [2025-02-28 13:44:30] : LOG : CPU Time: 0.08u 00:00:00.08 Elapsed: 00:00:01.00
11: [2025-02-28 13:44:30] : LOG : Aligning
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1:
1: [2025-02-28 13:44:30] : LOG : Testing correctness of AVX bpm.
11: [2025-02-28 13:44:30] : LOG : CPU Time: 0.08u 00:00:00.08 Elapsed: 00:00:00.00
11: >1ags_A
11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG
11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ-------------
11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY--
11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE
11: ARKIFRF-------
11: >GTA1_BOVIN
11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG
11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP-------------
11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY--
11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE
11: ARKVFKF-------
11: >GTA1_MOUSE
11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG
11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA--
11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP-------------
11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY--
11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE
11: ARKAFKIQ------
11: >GTC1_RAT
11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG
11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP-------------
11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH--
11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES
11: AVKIFS--------
11: >GTC_RABIT
11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG
11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA--
11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP-------------
11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN--
11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE
11: AKIIFH--------
11: >GTA1_RABIT
11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG
11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA--
11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP-------------
11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN--
11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK
11: AKKIFKIP------
11: >GTA1_CAVPO
11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG
11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA--
11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP-------------
11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM--
11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE
11: MRKF----------
11: >GTA3_RAT
11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG
11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA--
11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA-------------
11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM--
11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV
11: VRTVLKF-------
11: >GTA3_CHICK
11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG
11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS-------------
11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM--
11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET
11: VRRVLRMYYDVKPH
11: >GTA2_CHICK
11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG
11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA--
11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA-------------
11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM--
11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN
11: VRKIFSF-------
11: >GTA1_CHICK
11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG
11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA--
11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP-------------
11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA--
11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR
11: LMAIFH--------
11: >GTA1_ANTST
11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG
11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA--
11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK-------------
11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM--
11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED
11: IIKIFYF-------
11: >GTA4_HUMAN
11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG
11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA--
11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK-------------
11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA--
11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT
11: VYNIFRP-------
11: >1oe7_A
11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG
11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA--
11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP-------------
11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH--
11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA----------
11: --------------
11: >GTP1_BUFBU
11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG
11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA--
11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN-------------
11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN--
11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ
11: --------------
11: >GT28_SCHJA
11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG
11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA--
11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP-------------
11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH--
11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------
11: --------------
11: >GTS1_ASCSU
11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG
11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG--
11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE---
11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS--
11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY---------
11: --------------
11: >GTS9_CAEEL
11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG
11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS--
11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS---
11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD--
11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR---------
11: --------------
11: >GTS3_CAEEL
11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG
11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA--
11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES---
11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT--
11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF---------
11: --------------
11: >GTS5_CAEEL
11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG
11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA--
11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG---
11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD--
11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF---------
11: --------------
11: >GTS6_CAEEL
11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG
11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA--
11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK---
11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD--
11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF---------
11: --------------
11: >GTS4_CAEEL
11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN
11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA--
11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD---
11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS--
11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV---------
11: --------------
11: >GTS2_CAEEL
11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD
11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA--
11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP---
11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST--
11: -----LIN--IRLF-AE--K-EPHLNVFIRKL----------------------------
11: --------------
11: >GTS1_CAEEL
11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD
11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG--
11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI---
11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK--
11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA---------
11: --------------
11: >GTS_ANOGA
11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN
11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA--
11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV---
11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY--
11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV---------
11: --------------
11: >GTS2_MANSE
11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG
11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG--
11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN---
11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY--
11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF---------
11: --------------
11: >GT1_ONCVO
11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN
11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG--
11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK---
11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT--
11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF---------
11: --------------
11: >SC11_OMMSL
11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS
11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA--
11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK-------------
11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN--
11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF---------
11: --------------
11: >SC2_OCTDO
11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG
11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA--
11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG---
11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN--
11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF---------
11: --------------
11: >1aw9_
11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG
11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA--
11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL---
11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY--
11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP--------
11: --------------
11: >GTH3_ARATH
11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG
11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA--
11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM---
11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY--
11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV----------
11: --------------
11: >GTH7_ARATH
11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD
11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA--
11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS---
11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY--
11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------
11: --------------
11: >GTH6_ARATH
11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD
11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA--
11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF---
11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY--
11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------
11: --------------
11: >GTH_SILCU
11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH
11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT
11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF---
11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY--
11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA-----------
11: --------------
11: >GTH1_ARATH
11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN
11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA--
11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY---
11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY--
11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL-----------------
11: --------------
11: >GTH4_ARATH
11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN
11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA--
11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY---
11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY--
11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ-----------------
11: --------------
11: >GTH4_MAIZE
11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG
11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL--
11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL---
11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC--
11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE---
11: --------------
11: >GTH1_MAIZE
11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG
11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA--
11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML---
11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC--
11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA----------
11: --------------
11: >GTH1_WHEAT
11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG
11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL--
11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG
11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY--
11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY----
11: --------------
11: >GTH5_ARATH
11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG
11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV--
11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR---
11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA--
11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM---------
11: --------------
11: >1eem_A
11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG
11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD--
11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ-------------
11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER--
11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN
11: SPEACDYGL-----
11: >GTO1_MOUSE
11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG
11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD--
11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK-------------
11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR--
11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD
11: SPEACDYGL-----
11: >GTO2_HUMAN
11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD
11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD--
11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL-------------
11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER--
11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN
11: NPNAFDFGLC----
11: >YKJ3_CAEEL
11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN
11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD--
11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV-------------
11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY
11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS
11: PNYDYGLTKLSETI
10/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.44 sec
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1:
1: Dyn AVX DYN/AVX
1: [2025-02-28 13:44:59] : LOG : Timing DYN 256
1: [2025-02-28 13:45:11] : LOG : 2.299811 - dyn
1: [2025-02-28 13:45:11] : LOG : 0.000000 - bpm
1: [2025-02-28 13:45:11] : LOG : 0.183648 - bpm_block2
1: [2025-02-28 13:45:11] : LOG : 0.171770 - bpm_block
11/12 Test #1: bpm_utest ........................ Passed 42.46 sec
12:
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
12: [2025-02-28 13:46:30] : LOG : Protein alignments - 1000 seq
12:
[ ] 0%
[===== ] 10%
[========== ] 20%
[=============== ] 30%
[==================== ] 40%
[========================= ] 50%
[============================== ] 60%
[=================================== ] 70%
[======================================== ] 80%
[============================================= ] 90%
[==================================================] 100%
12: [2025-02-28 13:48:17] : LOG : Protein alignments - 10000 seq
12:
[ ] 0%
[========================= ] 50%
[==================================================] 100%
12: [2025-02-28 13:49:40] : LOG : DNA alignments - 20 seq
12:
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
12: [2025-02-28 13:51:44] : LOG : DNA alignments - 1000 seq
12:
[ ] 0%
[===== ] 10%
[========== ] 20%
[=============== ] 30%
[==================== ] 40%
[========================= ] 50%
[============================== ] 60%
[=================================== ] 70%
[======================================== ] 80%
[============================================= ] 90%
[==================================================] 100%
12: [2025-02-28 13:52:44] : LOG : DNA alignments - 10000 seq
12:
[ ] 0%
[========================= ] 50%
[==================================================] 100%
12/12 Test #12: DSSIM_takes_a_min ................ Passed 528.42 sec
100% tests passed, 0 tests failed out of 12
Total Test time (real) = 528.74 sec
make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
debian/rules execute_after_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0'
set -e ; for SIMD in avx2 avx sse4.1 ; do \
if lscpu | grep -q ${SIMD} ; then \
cd "obj-${SIMD}/" && \
ctest --verbose ; \
cd .. ; \
fi ; \
done
UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl
Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl
UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl
Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-avx/DartConfiguration.tcl
Test project /build/reproducible-path/kalign-3.4.0/obj-avx
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
Start 1: bpm_utest
1: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/bpm_utest
1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib
1: Test timeout computed to be: 1500
1: LEN: 256
1: [2025-02-28 13:53:23] : LOG : Testing correctness of serial bpm.
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1:
1: [2025-02-28 13:53:23] : LOG : Testing correctness of AVX bpm.
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1:
1: Dyn AVX DYN/AVX
1: [2025-02-28 13:54:29] : LOG : Timing DYN 256
1: [2025-02-28 13:54:46] : LOG : 2.540388 - dyn
1: [2025-02-28 13:54:46] : LOG : 0.000000 - bpm
1: [2025-02-28 13:54:46] : LOG : 0.213133 - bpm_block2
1: [2025-02-28 13:54:46] : LOG : 0.197957 - bpm_block
1/12 Test #1: bpm_utest ........................ Passed 83.15 sec
test 2
Start 2: alphabet_utest
2: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/alphabet_utest
2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib
2: Test timeout computed to be: 1500
2: LEN: 21
2: @ -1
2: A 0
2: B 20
2: C 1
2: D 2
2: E 3
2: F 4
2: G 5
2: H 6
2: I 7
2: J -1
2: K 8
2: L 9
2: M 10
2: N 11
2: O -1
2: P 12
2: Q 13
2: R 14
2: S 15
2: T 16
2: U 20
2: V 17
2: W 18
2: X 20
2: Y 19
2: Z 20
2: [ -1
2: \ -1
2: ] -1
2: ^ -1
2: _ -1
2: LEN: 13
2: @ -1
2: A 0
2: B 2
2: C 1
2: D 2
2: E 3
2: F 4
2: G 5
2: H 6
2: I 7
2: J -1
2: K 8
2: L 9
2: M 9
2: N 2
2: O -1
2: P 10
2: Q 3
2: R 8
2: S 0
2: T 0
2: U -1
2: V 7
2: W 11
2: X 12
2: Y 4
2: Z 3
2: [ -1
2: \ -1
2: ] -1
2: ^ -1
2: _ -1
2: LEN: 5
2: @ -1
2: A 0
2: B 4
2: C 1
2: D 4
2: E -1
2: F -1
2: G 2
2: H 4
2: I -1
2: J -1
2: K 4
2: L -1
2: M 4
2: N 4
2: O -1
2: P -1
2: Q -1
2: R 4
2: S 4
2: T 3
2: U 3
2: V 4
2: W 4
2: X -1
2: Y 4
2: Z -1
2: [ -1
2: \ -1
2: ] -1
2: ^ -1
2: _ -1
2: LEN: 6
2: @ -1
2: A 0
2: B 5
2: C 1
2: D 2
2: E 2
2: F 1
2: G 3
2: H 3
2: I 1
2: J -1
2: K 2
2: L 4
2: M 0
2: N 2
2: O -1
2: P 2
2: Q 2
2: R 2
2: S 3
2: T 3
2: U -1
2: V 1
2: W 4
2: X 5
2: Y 4
2: Z 5
2: [ -1
2: \ -1
2: ] -1
2: ^ -1
2: _ -1
2/12 Test #2: alphabet_utest ................... Passed 0.08 sec
test 3
Start 3: edist_utest
3: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/edist_utest
3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib
3: Test timeout computed to be: 1500
3: [2025-02-28 13:54:46] : LOG : Check for correctness.
3: [2025-02-28 13:54:46] : LOG : Timing serial
3: [2025-02-28 13:54:46] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
3/12 Test #3: edist_utest ...................... Passed 0.10 sec
test 4
Start 4: task_utest
4: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/lib/task_utest
4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-avx/lib
4: Test timeout computed to be: 1500
4: 130 889 168 842 388
4: 8 6 524 987 203
4: 922 852 361 361 205
4: 302 621 866 924 309
4: 613 874 231 197 485
4: 879 592 618 314 126
4: 390 680 318 48 178
4: 260 445 639 857 828
4: 254 877 440 472 275
4: 168 565 251 804 513
4: 580 47 800 869 635
4: 640 666 47 684 571
4: 813 333 733 467 456
4: 843 124 905 902 471
4: 461 396 202 860 282
4: 170 396 125 750 439
4: 389 733 249 385 248
4: 148 271 785 820 892
4: 232 795 514 475 653
4: 510 351 627 326 560
4: 796 303 240 146 527
4: 852 801 320 251 662
4: 933 639 69 702 811
4: 327 181 66 176 552
4: 402 926 420 951 7
4: 951 417 186 890 184
4: 60 856 263 406 190
4: 587 880 751 788 855
4: 238 143 80 339 676
4: 435 569 179 949 195
4: 47 64 364 827 444
4: 527 536 803 102 881
4: 315 651 549 622 885
4: 593 423 617 635 874
4: 259 807 449 785 981
4: 363 673 788 924 757
4: 961 813 189 128 193
4: 902 688 415 949 835
4: 468 105 206 391 893
4: 276 984 764 226 990
4: 968 413 280 544 138
4: 812 351 139 871 307
4: 381 121 887 213 280
4: 352 940 672 744 881
4: 239 518 365 267 231
4: 154 480 293 968 526
4: 872 414 922 893 830
4: 405 650 592 549 251
4: 815 15 119 143 862
4: 171 194 552 741 780
4: 301 888 441 943 230
4: 571 148 140 703 767
4: 971 970 30 62 714
4: 937 34 367 521 54
4/12 Test #4: task_utest ....................... Passed 0.05 sec
test 5
Start 5: C++Lib
5: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/tests/kaligncpp
5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
5: Test timeout computed to be: 1500
5: Aligned:
5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE----------
5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
5/12 Test #5: C++Lib ........................... Passed 0.12 sec
test 6
Start 6: kalign_itest_BB11001.tfa
6: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa"
6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
6: Test timeout computed to be: 1500
6:
6: Kalign (3.4.0)
6:
6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
6:
6: This program comes with ABSOLUTELY NO WARRANTY; for details type:
6: `kalign -showw'.
6: This is free software, and you are welcome to redistribute it
6: under certain conditions; consult the COPYING file for details.
6:
6: Please cite:
6: Lassmann, Timo.
6: "Kalign 3: multiple sequence alignment of large data sets."
6: Bioinformatics (2019)
6: https://doi.org/10.1093/bioinformatics/btz795
6:
6: [2025-02-28 13:54:46] : LOG : Detected protein sequences.
6: [2025-02-28 13:54:46] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa.
6: [2025-02-28 13:54:46] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
6: [2025-02-28 13:54:46] : LOG : Calculating pairwise distances
6: [2025-02-28 13:54:47] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:01.00
6: [2025-02-28 13:54:47] : LOG : Building guide tree.
6: [2025-02-28 13:54:47] : LOG : CPU Time: 0.05u 00:00:00.04 Elapsed: 00:00:00.00
6: [2025-02-28 13:54:47] : LOG : Aligning
6: [2025-02-28 13:54:47] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
6: >1aab_
6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG
6: KFEDMAKADKARYEREMKTYIPPKGE----------
6: >1j46_A
6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW
6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
6: >1k99_A
6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM
6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
6: >2lef_A
6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA
6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.14 sec
test 7
Start 7: kalign_itest_BB11001_EOF.msf
7: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf"
7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
7: Test timeout computed to be: 1500
7:
7: Kalign (3.4.0)
7:
7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
7:
7: This program comes with ABSOLUTELY NO WARRANTY; for details type:
7: `kalign -showw'.
7: This is free software, and you are welcome to redistribute it
7: under certain conditions; consult the COPYING file for details.
7:
7: Please cite:
7: Lassmann, Timo.
7: "Kalign 3: multiple sequence alignment of large data sets."
7: Bioinformatics (2019)
7: https://doi.org/10.1093/bioinformatics/btz795
7:
7: [2025-02-28 13:54:47] : LOG : Detected protein sequences.
7: [2025-02-28 13:54:47] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf.
7: [2025-02-28 13:54:47] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
7: [2025-02-28 13:54:47] : LOG : Calculating pairwise distances
7: [2025-02-28 13:54:47] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
7: [2025-02-28 13:54:47] : LOG : Building guide tree.
7: [2025-02-28 13:54:47] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
7: [2025-02-28 13:54:47] : LOG : Aligning
7: [2025-02-28 13:54:47] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00
7: >1aab_
7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG
7: KFEDMAKADKARYEREMKTYIPPKGE----------
7: >1j46_A
7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW
7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
7: >1k99_A
7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM
7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
7: >2lef_A
7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA
7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.16 sec
test 8
Start 8: kalign_itest_BB12006.msf
8: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf"
8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
8: Test timeout computed to be: 1500
8:
8: Kalign (3.4.0)
8:
8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
8:
8: This program comes with ABSOLUTELY NO WARRANTY; for details type:
8: `kalign -showw'.
8: This is free software, and you are welcome to redistribute it
8: under certain conditions; consult the COPYING file for details.
8:
8: Please cite:
8: Lassmann, Timo.
8: "Kalign 3: multiple sequence alignment of large data sets."
8: Bioinformatics (2019)
8: https://doi.org/10.1093/bioinformatics/btz795
8:
8: [2025-02-28 13:54:47] : LOG : Detected protein sequences.
8: [2025-02-28 13:54:47] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf.
8: [2025-02-28 13:54:47] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
8: [2025-02-28 13:54:47] : LOG : Calculating pairwise distances
8: [2025-02-28 13:54:47] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00
8: [2025-02-28 13:54:47] : LOG : Building guide tree.
8: [2025-02-28 13:54:47] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00
8: [2025-02-28 13:54:47] : LOG : Aligning
8: [2025-02-28 13:54:47] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00
8: >1al2_ad
8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ
8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ
8: KA---
8: >1bbt_ac
8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R--
8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF
8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY
8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE--
8: -----
8: >1bev_ac
8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N
8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC
8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG
8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ
8: TAILQ
8: >1mec_ac
8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK--
8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF
8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
8: Q----
8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.14 sec
test 9
Start 9: kalign_itest_BB12006.tfa
9: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa"
9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
9: Test timeout computed to be: 1500
9:
9: Kalign (3.4.0)
9:
9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
9:
9: This program comes with ABSOLUTELY NO WARRANTY; for details type:
9: `kalign -showw'.
9: This is free software, and you are welcome to redistribute it
9: under certain conditions; consult the COPYING file for details.
9:
9: Please cite:
9: Lassmann, Timo.
9: "Kalign 3: multiple sequence alignment of large data sets."
9: Bioinformatics (2019)
9: https://doi.org/10.1093/bioinformatics/btz795
9:
9: [2025-02-28 13:54:47] : LOG : Detected protein sequences.
9: [2025-02-28 13:54:47] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
9: [2025-02-28 13:54:47] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
9: [2025-02-28 13:54:47] : LOG : Calculating pairwise distances
9: [2025-02-28 13:54:47] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00
9: [2025-02-28 13:54:47] : LOG : Building guide tree.
9: [2025-02-28 13:54:47] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
9: [2025-02-28 13:54:47] : LOG : Aligning
9: [2025-02-28 13:54:47] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
9: >1al2_ad
9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ
9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ
9: KA---
9: >1bbt_ac
9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R--
9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF
9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY
9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE--
9: -----
9: >1bev_ac
9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N
9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC
9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG
9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ
9: TAILQ
9: >1mec_ac
9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK--
9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF
9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
9: Q----
9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.21 sec
test 10
Start 10: kalign_itest_BB30014.msf
10: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa"
10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
10: Test timeout computed to be: 1500
10:
10: Kalign (3.4.0)
10:
10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
10:
10: This program comes with ABSOLUTELY NO WARRANTY; for details type:
10: `kalign -showw'.
10: This is free software, and you are welcome to redistribute it
10: under certain conditions; consult the COPYING file for details.
10:
10: Please cite:
10: Lassmann, Timo.
10: "Kalign 3: multiple sequence alignment of large data sets."
10: Bioinformatics (2019)
10: https://doi.org/10.1093/bioinformatics/btz795
10:
10: [2025-02-28 13:54:47] : LOG : Detected protein sequences.
10: [2025-02-28 13:54:47] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
10: [2025-02-28 13:54:47] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
10: [2025-02-28 13:54:47] : LOG : Calculating pairwise distances
10: [2025-02-28 13:54:47] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00
10: [2025-02-28 13:54:47] : LOG : Building guide tree.
10: [2025-02-28 13:54:47] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
10: [2025-02-28 13:54:47] : LOG : Aligning
10: [2025-02-28 13:54:47] : LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00
10: >1al2_ad
10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ
10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ
10: KA---
10: >1bbt_ac
10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R--
10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF
10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY
10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE--
10: -----
10: >1bev_ac
10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N
10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC
10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG
10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ
10: TAILQ
10: >1mec_ac
10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK--
10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF
10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
10: Q----
10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.19 sec
test 11
Start 11: kalign_itest_BB30014.tfa
11: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa"
11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
11: Test timeout computed to be: 1500
11:
11: Kalign (3.4.0)
11:
11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
11:
11: This program comes with ABSOLUTELY NO WARRANTY; for details type:
11: `kalign -showw'.
11: This is free software, and you are welcome to redistribute it
11: under certain conditions; consult the COPYING file for details.
11:
11: Please cite:
11: Lassmann, Timo.
11: "Kalign 3: multiple sequence alignment of large data sets."
11: Bioinformatics (2019)
11: https://doi.org/10.1093/bioinformatics/btz795
11:
11: [2025-02-28 13:54:47] : LOG : Detected protein sequences.
11: [2025-02-28 13:54:47] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa.
11: [2025-02-28 13:54:47] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
11: [2025-02-28 13:54:47] : LOG : Calculating pairwise distances
11: [2025-02-28 13:54:47] : LOG : CPU Time: 0.08u 00:00:00.08 Elapsed: 00:00:00.00
11: [2025-02-28 13:54:47] : LOG : Building guide tree.
11: [2025-02-28 13:54:48] : LOG : CPU Time: 0.10u 00:00:00.09 Elapsed: 00:00:01.00
11: [2025-02-28 13:54:48] : LOG : Aligning
11: [2025-02-28 13:54:48] : LOG : CPU Time: 0.10u 00:00:00.09 Elapsed: 00:00:00.00
11: >1ags_A
11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG
11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ-------------
11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY--
11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE
11: ARKIFRF-------
11: >GTA1_BOVIN
11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG
11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP-------------
11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY--
11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE
11: ARKVFKF-------
11: >GTA1_MOUSE
11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG
11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA--
11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP-------------
11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY--
11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE
11: ARKAFKIQ------
11: >GTC1_RAT
11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG
11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP-------------
11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH--
11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES
11: AVKIFS--------
11: >GTC_RABIT
11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG
11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA--
11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP-------------
11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN--
11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE
11: AKIIFH--------
11: >GTA1_RABIT
11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG
11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA--
11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP-------------
11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN--
11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK
11: AKKIFKIP------
11: >GTA1_CAVPO
11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG
11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA--
11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP-------------
11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM--
11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE
11: MRKF----------
11: >GTA3_RAT
11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG
11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA--
11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA-------------
11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM--
11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV
11: VRTVLKF-------
11: >GTA3_CHICK
11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG
11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS-------------
11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM--
11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET
11: VRRVLRMYYDVKPH
11: >GTA2_CHICK
11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG
11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA--
11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA-------------
11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM--
11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN
11: VRKIFSF-------
11: >GTA1_CHICK
11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG
11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA--
11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP-------------
11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA--
11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR
11: LMAIFH--------
11: >GTA1_ANTST
11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG
11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA--
11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK-------------
11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM--
11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED
11: IIKIFYF-------
11: >GTA4_HUMAN
11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG
11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA--
11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK-------------
11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA--
11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT
11: VYNIFRP-------
11: >1oe7_A
11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG
11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA--
11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP-------------
11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH--
11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA----------
11: --------------
11: >GTP1_BUFBU
11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG
11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA--
11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN-------------
11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN--
11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ
11: --------------
11: >GT28_SCHJA
11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG
11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA--
11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP-------------
11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH--
11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------
11: --------------
11: >GTS1_ASCSU
11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG
11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG--
11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE---
11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS--
11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY---------
11: --------------
11: >GTS9_CAEEL
11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG
11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS--
11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS---
11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD--
11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR---------
11: --------------
11: >GTS3_CAEEL
11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG
11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA--
11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES---
11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT--
11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF---------
11: --------------
11: >GTS5_CAEEL
11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG
11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA--
11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG---
11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD--
11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF---------
11: --------------
11: >GTS6_CAEEL
11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG
11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA--
11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK---
11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD--
11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF---------
11: --------------
11: >GTS4_CAEEL
11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN
11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA--
11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD---
11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS--
11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV---------
11: --------------
11: >GTS2_CAEEL
11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD
11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA--
11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP---
11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST--
11: -----LIN--IRLF-AE--K-EPHLNVFIRKL----------------------------
11: --------------
11: >GTS1_CAEEL
11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD
11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG--
11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI---
11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK--
11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA---------
11: --------------
11: >GTS_ANOGA
11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN
11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA--
11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV---
11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY--
11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV---------
11: --------------
11: >GTS2_MANSE
11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG
11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG--
11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN---
11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY--
11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF---------
11: --------------
11: >GT1_ONCVO
11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN
11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG--
11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK---
11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT--
11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF---------
11: --------------
11: >SC11_OMMSL
11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS
11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA--
11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK-------------
11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN--
11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF---------
11: --------------
11: >SC2_OCTDO
11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG
11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA--
11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG---
11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN--
11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF---------
11: --------------
11: >1aw9_
11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG
11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA--
11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL---
11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY--
11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP--------
11: --------------
11: >GTH3_ARATH
11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG
11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA--
11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM---
11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY--
11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV----------
11: --------------
11: >GTH7_ARATH
11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD
11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA--
11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS---
11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY--
11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------
11: --------------
11: >GTH6_ARATH
11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD
11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA--
11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF---
11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY--
11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------
11: --------------
11: >GTH_SILCU
11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH
11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT
11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF---
11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY--
11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA-----------
11: --------------
11: >GTH1_ARATH
11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN
11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA--
11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY---
11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY--
11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL-----------------
11: --------------
11: >GTH4_ARATH
11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN
11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA--
11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY---
11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY--
11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ-----------------
11: --------------
11: >GTH4_MAIZE
11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG
11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL--
11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL---
11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC--
11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE---
11: --------------
11: >GTH1_MAIZE
11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG
11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA--
11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML---
11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC--
11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA----------
11: --------------
11: >GTH1_WHEAT
11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG
11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL--
11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG
11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY--
11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY----
11: --------------
11: >GTH5_ARATH
11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG
11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV--
11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR---
11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA--
11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM---------
11: --------------
11: >1eem_A
11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG
11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD--
11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ-------------
11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER--
11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN
11: SPEACDYGL-----
11: >GTO1_MOUSE
11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG
11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD--
11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK-------------
11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR--
11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD
11: SPEACDYGL-----
11: >GTO2_HUMAN
11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD
11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD--
11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL-------------
11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER--
11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN
11: NPNAFDFGLC----
11: >YKJ3_CAEEL
11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN
11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD--
11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV-------------
11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY
11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS
11: PNYDYGLTKLSETI
11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.40 sec
test 12
Start 12: DSSIM_takes_a_min
12: Test command: /build/reproducible-path/kalign-3.4.0/obj-avx/tests/dssim
12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
12: Test timeout computed to be: 1500
12: [2025-02-28 13:54:48] : LOG : DSSim - a simplistic sequence simulator.
12: [2025-02-28 13:54:48] : LOG : Protein alignments - 20 seq
12:
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
12: [2025-02-28 13:57:28] : LOG : Protein alignments - 1000 seq
12:
[ ] 0%
[===== ] 10%
[========== ] 20%
[=============== ] 30%
[==================== ] 40%
[========================= ] 50%
[============================== ] 60%
[=================================== ] 70%
[======================================== ] 80%
[============================================= ] 90%
[==================================================] 100%
12: [2025-02-28 13:59:36] : LOG : Protein alignments - 10000 seq
12:
[ ] 0%
[========================= ] 50%
[==================================================] 100%
12: [2025-02-28 14:01:23] : LOG : DNA alignments - 20 seq
12:
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
12: [2025-02-28 14:04:14] : LOG : DNA alignments - 1000 seq
12:
[ ] 0%
[===== ] 10%
[========== ] 20%
[=============== ] 30%
[==================== ] 40%
[========================= ] 50%
[============================== ] 60%
[=================================== ] 70%
[======================================== ] 80%
[============================================= ] 90%
[==================================================] 100%
12: [2025-02-28 14:05:27] : LOG : DNA alignments - 10000 seq
12:
[ ] 0%
[========================= ] 50%
[==================================================] 100%
12/12 Test #12: DSSIM_takes_a_min ................ Passed 681.88 sec
100% tests passed, 0 tests failed out of 12
Total Test time (real) = 766.72 sec
UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl
Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl
UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl
Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-sse4.1/DartConfiguration.tcl
Test project /build/reproducible-path/kalign-3.4.0/obj-sse4.1
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
Start 1: bpm_utest
1: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/bpm_utest
1: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib
1: Test timeout computed to be: 1500
1: LEN: 256
1: [2025-02-28 14:06:10] : LOG : Testing correctness of serial bpm.
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1:
1: [2025-02-28 14:06:10] : LOG : Testing correctness of AVX bpm.
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1: 0 0 0 0
1:
1: Dyn AVX DYN/AVX
1: [2025-02-28 14:06:43] : LOG : Timing DYN 256
1: [2025-02-28 14:06:57] : LOG : 2.571421 - dyn
1: [2025-02-28 14:06:57] : LOG : 0.000000 - bpm
1: [2025-02-28 14:06:57] : LOG : 0.207279 - bpm_block2
1: [2025-02-28 14:06:57] : LOG : 0.192344 - bpm_block
1/12 Test #1: bpm_utest ........................ Passed 46.91 sec
test 2
Start 2: alphabet_utest
2: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/alphabet_utest
2: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib
2: Test timeout computed to be: 1500
2: LEN: 21
2: @ -1
2: A 0
2: B 20
2: C 1
2: D 2
2: E 3
2: F 4
2: G 5
2: H 6
2: I 7
2: J -1
2: K 8
2: L 9
2: M 10
2: N 11
2: O -1
2: P 12
2: Q 13
2: R 14
2: S 15
2: T 16
2: U 20
2: V 17
2: W 18
2: X 20
2: Y 19
2: Z 20
2: [ -1
2: \ -1
2: ] -1
2: ^ -1
2: _ -1
2: LEN: 13
2: @ -1
2: A 0
2: B 2
2: C 1
2: D 2
2: E 3
2: F 4
2: G 5
2: H 6
2: I 7
2: J -1
2: K 8
2: L 9
2: M 9
2: N 2
2: O -1
2: P 10
2: Q 3
2: R 8
2: S 0
2: T 0
2: U -1
2: V 7
2: W 11
2: X 12
2: Y 4
2: Z 3
2: [ -1
2: \ -1
2: ] -1
2: ^ -1
2: _ -1
2: LEN: 5
2: @ -1
2: A 0
2: B 4
2: C 1
2: D 4
2: E -1
2: F -1
2: G 2
2: H 4
2: I -1
2: J -1
2: K 4
2: L -1
2: M 4
2: N 4
2: O -1
2: P -1
2: Q -1
2: R 4
2: S 4
2: T 3
2: U 3
2: V 4
2: W 4
2: X -1
2: Y 4
2: Z -1
2: [ -1
2: \ -1
2: ] -1
2: ^ -1
2: _ -1
2: LEN: 6
2: @ -1
2: A 0
2: B 5
2: C 1
2: D 2
2: E 2
2: F 1
2: G 3
2: H 3
2: I 1
2: J -1
2: K 2
2: L 4
2: M 0
2: N 2
2: O -1
2: P 2
2: Q 2
2: R 2
2: S 3
2: T 3
2: U -1
2: V 1
2: W 4
2: X 5
2: Y 4
2: Z 5
2: [ -1
2: \ -1
2: ] -1
2: ^ -1
2: _ -1
2/12 Test #2: alphabet_utest ................... Passed 0.05 sec
test 3
Start 3: edist_utest
3: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/edist_utest
3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib
3: Test timeout computed to be: 1500
3: [2025-02-28 14:06:57] : LOG : Check for correctness.
3: [2025-02-28 14:06:57] : LOG : Timing serial
3: [2025-02-28 14:06:57] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
3/12 Test #3: edist_utest ...................... Passed 0.03 sec
test 4
Start 4: task_utest
4: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib/task_utest
4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/lib
4: Test timeout computed to be: 1500
4: 435 788 262 769 825
4: 45 379 407 283 858
4: 323 578 244 115 840
4: 443 487 838 858 312
4: 704 867 848 159 868
4: 271 546 308 374 833
4: 449 354 95 969 556
4: 257 67 598 582 550
4: 158 861 570 497 788
4: 752 227 300 153 186
4: 370 717 956 168 724
4: 788 22 581 499 845
4: 490 181 784 537 172
4: 133 720 418 645 130
4: 914 461 759 611 958
4: 674 472 914 957 96
4: 648 660 194 813 689
4: 697 380 158 326 968
4: 852 101 14 442 983
4: 320 488 913 326 122
4: 14 609 50 778 93
4: 34 258 100 910 210
4: 30 67 826 751 40
4: 617 901 562 363 450
4: 293 52 295 665 420
4: 320 669 449 635 539
4: 529 179 965 261 952
4: 170 771 900 158 188
4: 395 960 777 584 575
4: 265 988 475 371 79
4: 17 636 336 604 189
4: 852 330 854 132 518
4: 585 769 925 690 657
4: 386 170 725 276 926
4: 99 239 811 850 576
4: 663 260 287 243 4
4: 99 729 573 980 28
4: 194 123 258 690 401
4: 999 541 50 863 608
4: 548 828 101 178 311
4: 454 722 921 392 534
4: 810 64 707 758 696
4: 772 600 61 33 167
4: 692 954 200 573 83
4: 462 602 786 53 459
4: 437 249 448 597 922
4: 331 138 608 712 899
4: 0 130 471 319 94
4: 371 373 728 552 891
4: 111 53 943 599 153
4: 318 699 362 107 615
4: 614 77 739 120 553
4: 567 255 998 824 718
4: 718 803 446 281 635
4/12 Test #4: task_utest ....................... Passed 0.02 sec
test 5
Start 5: C++Lib
5: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/kaligncpp
5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
5: Test timeout computed to be: 1500
5: Aligned:
5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE----------
5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
5/12 Test #5: C++Lib ........................... Passed 0.16 sec
test 6
Start 6: kalign_itest_BB11001.tfa
6: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa"
6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
6: Test timeout computed to be: 1500
6:
6: Kalign (3.4.0)
6:
6: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
6:
6: This program comes with ABSOLUTELY NO WARRANTY; for details type:
6: `kalign -showw'.
6: This is free software, and you are welcome to redistribute it
6: under certain conditions; consult the COPYING file for details.
6:
6: Please cite:
6: Lassmann, Timo.
6: "Kalign 3: multiple sequence alignment of large data sets."
6: Bioinformatics (2019)
6: https://doi.org/10.1093/bioinformatics/btz795
6:
6: [2025-02-28 14:06:57] : LOG : Detected protein sequences.
6: [2025-02-28 14:06:57] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa.
6: [2025-02-28 14:06:57] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
6: [2025-02-28 14:06:57] : LOG : Calculating pairwise distances
6: [2025-02-28 14:06:57] : LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
6: [2025-02-28 14:06:57] : LOG : Building guide tree.
6: [2025-02-28 14:06:57] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
6: [2025-02-28 14:06:57] : LOG : Aligning
6: [2025-02-28 14:06:57] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00
6: >1aab_
6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG
6: KFEDMAKADKARYEREMKTYIPPKGE----------
6: >1j46_A
6: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW
6: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
6: >1k99_A
6: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM
6: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
6: >2lef_A
6: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA
6: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
6/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.07 sec
test 7
Start 7: kalign_itest_BB11001_EOF.msf
7: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf"
7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
7: Test timeout computed to be: 1500
7:
7: Kalign (3.4.0)
7:
7: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
7:
7: This program comes with ABSOLUTELY NO WARRANTY; for details type:
7: `kalign -showw'.
7: This is free software, and you are welcome to redistribute it
7: under certain conditions; consult the COPYING file for details.
7:
7: Please cite:
7: Lassmann, Timo.
7: "Kalign 3: multiple sequence alignment of large data sets."
7: Bioinformatics (2019)
7: https://doi.org/10.1093/bioinformatics/btz795
7:
7: [2025-02-28 14:06:57] : LOG : Detected protein sequences.
7: [2025-02-28 14:06:57] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf.
7: [2025-02-28 14:06:57] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
7: [2025-02-28 14:06:57] : LOG : Calculating pairwise distances
7: [2025-02-28 14:06:57] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00
7: [2025-02-28 14:06:57] : LOG : Building guide tree.
7: [2025-02-28 14:06:57] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
7: [2025-02-28 14:06:57] : LOG : Aligning
7: [2025-02-28 14:06:57] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
7: >1aab_
7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG
7: KFEDMAKADKARYEREMKTYIPPKGE----------
7: >1j46_A
7: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKW
7: PFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
7: >1k99_A
7: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKM
7: KYIQDFQREKQEFERNLARFREDHPDLIQNAKK---
7: >2lef_A
7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA
7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK
7/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.12 sec
test 8
Start 8: kalign_itest_BB12006.msf
8: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf"
8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
8: Test timeout computed to be: 1500
8:
8: Kalign (3.4.0)
8:
8: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
8:
8: This program comes with ABSOLUTELY NO WARRANTY; for details type:
8: `kalign -showw'.
8: This is free software, and you are welcome to redistribute it
8: under certain conditions; consult the COPYING file for details.
8:
8: Please cite:
8: Lassmann, Timo.
8: "Kalign 3: multiple sequence alignment of large data sets."
8: Bioinformatics (2019)
8: https://doi.org/10.1093/bioinformatics/btz795
8:
8: [2025-02-28 14:06:57] : LOG : Detected protein sequences.
8: [2025-02-28 14:06:57] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf.
8: [2025-02-28 14:06:57] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
8: [2025-02-28 14:06:57] : LOG : Calculating pairwise distances
8: [2025-02-28 14:06:57] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00
8: [2025-02-28 14:06:57] : LOG : Building guide tree.
8: [2025-02-28 14:06:57] : LOG : CPU Time: 0.03u 00:00:00.02 Elapsed: 00:00:00.00
8: [2025-02-28 14:06:57] : LOG : Aligning
8: [2025-02-28 14:06:57] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
8: >1al2_ad
8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
8: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ
8: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ
8: KA---
8: >1bbt_ac
8: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R--
8: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF
8: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY
8: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE--
8: -----
8: >1bev_ac
8: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N
8: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC
8: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG
8: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ
8: TAILQ
8: >1mec_ac
8: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK--
8: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF
8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
8: Q----
8/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.11 sec
test 9
Start 9: kalign_itest_BB12006.tfa
9: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa"
9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
9: Test timeout computed to be: 1500
9:
9: Kalign (3.4.0)
9:
9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
9:
9: This program comes with ABSOLUTELY NO WARRANTY; for details type:
9: `kalign -showw'.
9: This is free software, and you are welcome to redistribute it
9: under certain conditions; consult the COPYING file for details.
9:
9: Please cite:
9: Lassmann, Timo.
9: "Kalign 3: multiple sequence alignment of large data sets."
9: Bioinformatics (2019)
9: https://doi.org/10.1093/bioinformatics/btz795
9:
9: [2025-02-28 14:06:57] : LOG : Detected protein sequences.
9: [2025-02-28 14:06:57] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
9: [2025-02-28 14:06:57] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
9: [2025-02-28 14:06:57] : LOG : Calculating pairwise distances
9: [2025-02-28 14:06:58] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:01.00
9: [2025-02-28 14:06:58] : LOG : Building guide tree.
9: [2025-02-28 14:06:58] : LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00
9: [2025-02-28 14:06:58] : LOG : Aligning
9: [2025-02-28 14:06:58] : LOG : CPU Time: 0.05u 00:00:00.04 Elapsed: 00:00:00.00
9: >1al2_ad
9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
9: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ
9: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ
9: KA---
9: >1bbt_ac
9: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R--
9: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF
9: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY
9: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE--
9: -----
9: >1bev_ac
9: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N
9: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC
9: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG
9: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ
9: TAILQ
9: >1mec_ac
9: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK--
9: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF
9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
9: Q----
9/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.17 sec
test 10
Start 10: kalign_itest_BB30014.msf
10: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa"
10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
10: Test timeout computed to be: 1500
10:
10: Kalign (3.4.0)
10:
10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
10:
10: This program comes with ABSOLUTELY NO WARRANTY; for details type:
10: `kalign -showw'.
10: This is free software, and you are welcome to redistribute it
10: under certain conditions; consult the COPYING file for details.
10:
10: Please cite:
10: Lassmann, Timo.
10: "Kalign 3: multiple sequence alignment of large data sets."
10: Bioinformatics (2019)
10: https://doi.org/10.1093/bioinformatics/btz795
10:
10: [2025-02-28 14:06:58] : LOG : Detected protein sequences.
10: [2025-02-28 14:06:58] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
10: [2025-02-28 14:06:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
10: [2025-02-28 14:06:58] : LOG : Calculating pairwise distances
10: [2025-02-28 14:06:58] : LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00
10: [2025-02-28 14:06:58] : LOG : Building guide tree.
10: [2025-02-28 14:06:58] : LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00
10: [2025-02-28 14:06:58] : LOG : Aligning
10: [2025-02-28 14:06:58] : LOG : CPU Time: 0.04u 00:00:00.03 Elapsed: 00:00:00.00
10: >1al2_ad
10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
10: LFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQ
10: TIDD-----SFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQ
10: KA---
10: >1bbt_ac
10: GIFPVACSDGYGGLVTTDPKTADPVYGKVFNPPRNQLPGRFTNLLDVAEACPTFL--R--
10: ---FEGGVPYVTTKTDSDRV---LAQFDMSLAAK-HMSNTFLAGLAQYYTQYSGTINLHF
10: MFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAADYTY
10: TASDVA--ETTNVQGWVCLFQITH-----GKADGDALVVLASAGKDFELRLPVDARAE--
10: -----
10: >1bev_ac
10: G-LPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQV-ESILEAN-N
10: REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC
10: MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRG
10: VSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQ
10: TAILQ
10: >1mec_ac
10: SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQI-PTFIGNK--
10: ---MPNAVPYIEASNTAVKTQ-PLAVYQVTLSCS-CLANTFLAALSRNFAQYRGSLVYTF
10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
10: Q----
10/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.12 sec
test 11
Start 11: kalign_itest_BB30014.tfa
11: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa"
11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
11: Test timeout computed to be: 1500
11:
11: Kalign (3.4.0)
11:
11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
11:
11: This program comes with ABSOLUTELY NO WARRANTY; for details type:
11: `kalign -showw'.
11: This is free software, and you are welcome to redistribute it
11: under certain conditions; consult the COPYING file for details.
11:
11: Please cite:
11: Lassmann, Timo.
11: "Kalign 3: multiple sequence alignment of large data sets."
11: Bioinformatics (2019)
11: https://doi.org/10.1093/bioinformatics/btz795
11:
11: [2025-02-28 14:06:58] : LOG : Detected protein sequences.
11: [2025-02-28 14:06:58] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa.
11: [2025-02-28 14:06:58] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
11: [2025-02-28 14:06:58] : LOG : Calculating pairwise distances
11: [2025-02-28 14:06:58] : LOG : CPU Time: 0.06u 00:00:00.06 Elapsed: 00:00:00.00
11: [2025-02-28 14:06:58] : LOG : Building guide tree.
11: [2025-02-28 14:06:58] : LOG : CPU Time: 0.09u 00:00:00.09 Elapsed: 00:00:00.00
11: [2025-02-28 14:06:58] : LOG : Aligning
11: [2025-02-28 14:06:58] : LOG : CPU Time: 0.10u 00:00:00.09 Elapsed: 00:00:00.00
11: >1ags_A
11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG
11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
11: SKYNLY-RKDIKEK--------ALIDMYIE-GIADLGEMILLLPFTQ-------------
11: -PEEQDAKLALIKEK-IKNRYFPAFEKVLKSH--GQDYL-VGNKLSRADIHLVELLYY--
11: -----VEE--LDSSLIS--S-FPLLKALKTRI-SNLPTVKKFLQPGSPRKPPMDEKSLEE
11: ARKIFRF-------
11: >GTA1_BOVIN
11: ----------------------------------AGKPTLHYFNGRGRMECIRWLLAAAG
11: VEFEEKFIEKPEDLDKLKNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
11: TKYNLY-GKDMKER--------ALIDMYSE-GVADLGEMIMHFPLCP-------------
11: -PAEKDAKLTLIREK-TTNRYLPAFENVLKSH--GQDYL-VGNKLSRADIHLVELLYY--
11: -----VEE--LDPSLLA--N-FPLLKALKARV-SSLPAVKKFLQPGSQRKPPTDEKKIEE
11: ARKVFKF-------
11: >GTA1_MOUSE
11: ----------------------------------AGKPVLHYFNARGRMECIRWLLAAAG
11: VEFEEKFIQSPEDLEKLKKDG--NLMFDQVPMVEI-----DG--MKLAQTRAILNYIA--
11: TKYDLY-GKDMKER--------ALIDMYSE-GILDLTEMIGQLVLCP-------------
11: -PDQREAKTALAKDR-TKNRYLPAFEKVLKSH--GQDYL-VGNRLTRVDIHLLEVLLY--
11: -----VEE--FDASLLT--P-FPLLKAFKSRI-SSLPNVKKFLQPGSQRKPPMDAKQIQE
11: ARKAFKIQ------
11: >GTC1_RAT
11: ----------------------------------PGKPVLHYFDGRGRMEPIRWLLAAAG
11: VEFEEQFLKTRDDLARLRNDG--SLMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
11: TKYNLY-GKDMKER--------ALIDMYAE-GVADLDEIVLHYPYIP-------------
11: -PGEKEASLAKIKDK-ARNRYFPAFEKVLKSH--GQDYL-VGNRLSRADVYLVQVLYH--
11: -----VEE--LDPSALA--N-FPLLKALRTRV-SNLPTVKKFLQPGSQRKPLEDEKCVES
11: AVKIFS--------
11: >GTC_RABIT
11: ----------------------------------AGKPKLHYFNARGRMESIRWLLTAAG
11: VEFEEKCMKTREDLEKLRKDG--VLMFQQVPMVEI-----DG--MKLVQTRAIFNYIA--
11: DKHNLY-GKDIKER--------ALIDMYTE-GIVDLNELILTRPFLP-------------
11: -PEEQEAKLAQIKDK-AKNRYFPAFEKVLKSH--GQDYL-VGNKLSKADILLVELLYN--
11: -----VEE--LNPGATA--S-FPLLQALKTRI-SNLPTVKKFLQPGSQRNPPDDEKCREE
11: AKIIFH--------
11: >GTA1_RABIT
11: ---------------------------------MARKPLLHYFNGRGRMESIRWLLAAAG
11: EEFDEKFMETAEDLDKLRNDG--SLMYQQVPMVEI-----DG--MKLVQTRAILNYVA--
11: NKHNLY-GKDMKER--------ALIDMYTE-GVADLYELVLLLPLCP-------------
11: -PEQKDAKVDFIKEK-IRTRYFPAFEKVLKSH--GQDYL-VGNRLSKADILLVELLYN--
11: -----VEE--LDPSAIA--S-FPLLKALKTRI-SSLPTVKKFLQPGSQRKPPMDEKNLEK
11: AKKIFKIP------
11: >GTA1_CAVPO
11: ----------------------------------SGKPVLHYFNVQGRMESIRWLLAAAG
11: VEFEEKLIMCQEDLDKLKNDG--LLMFQQVPMVEM-----DG--MKMVQSRAILNYIA--
11: TKYNLY-GKDTKER--------LLIDMYTE-GMTDLYELFFKVILAP-------------
11: -PEEKDAAKSLIKDR-AKNRFLPAFEKVLKSH--GQGYL-VGNKLSKADILLTELLYM--
11: -----VEE--FDASLLA--N-FTLLQALKTRV-SNLPNVKKFLQPGSQRKPFPTQEMFEE
11: MRKF----------
11: >GTA3_RAT
11: ---------------------------------MEVKPKLYYFQGRGRMESIRWLLATAG
11: VEFEEEFLETREQYEKLQKDG--CLLFGQVPLVEI-----DG--MLLTQTRAILSYLA--
11: AKYNLY-GKDLKER--------VRIDMYAD-GTQDLMMMIIGAPFKA-------------
11: -PQEKEESLALAVKR-AKNRYFPVFEKILKDH--GEAFL-VGNQLSWADIQLLEAILM--
11: -----VEE--VSAPVLS--D-FPLLQAFKTRI-SNIPTIKKFLQPGSQRKPPPDGHYVDV
11: VRTVLKF-------
11: >GTA3_CHICK
11: ----------------------------------AAKPVLYYFNGRGKMESIRWLLAAAG
11: VEFEEVFLETREQYEKLLQSG--ILMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
11: GKYNLY-GKDLKER--------ALIDMYVG-GTDDLMGFLLSFPFLS-------------
11: -AEDKVKQCAFVVEK-ATSRYFPAYEKVLKDH--GQDFL-VGNRLSWADIHLLEAILM--
11: -----VEE--KKSDALS--G-FPLLQAFKKRI-SSIPTIKKFLAPGSKRKPISDDKYVET
11: VRRVLRMYYDVKPH
11: >GTA2_CHICK
11: ---------------------------------MAGKPKLHYTRGRGKMESIRWLLAAAG
11: VEFEEEFIEKKEDLEKLRNDG--SLLFQQVPMVEI-----DG--MKMVQSRAILCYIA--
11: GKYNLY-GKDLKER--------AWIDMYVE-GTTDLMGMIMALPFQA-------------
11: -ADVKEKNIALITER-ATTRYFPVYEKALKDH--GQDYL-VGNKLSWADIHLLEAILM--
11: -----TEE--LKSDILS--A-FPLLQAFKGRM-SNVPTIKKFLQPGSQRKPPLDEKSIAN
11: VRKIFSF-------
11: >GTA1_CHICK
11: ---------------------------------MSGKPVLHYANTRGRMESVRWLLAAAG
11: VEFEEKFLEKKEDLQKLKSDG--SLLFQQVPMVEI-----DG--MKMVQTRAILNYIA--
11: GKYNLY-GKDLKER--------ALIDMYVE-GLADLYELIMMNVVQP-------------
11: -ADKKEEHLANALDK-AANRYFPVFEKVLKDH--GHDFL-VGNKLSRADVHLLETILA--
11: -----VEE--SKPDALA--K-FPLLQSFKART-SNIPNIKKFLQPGSQRKPRLEEKDIPR
11: LMAIFH--------
11: >GTA1_ANTST
11: ---------------------------------MAGEQNIKYFNIKGRMEAIRWLLAVAG
11: VEFEEKFFETKEQLQKLKET---VLLFQQVPMVEI-----DG--MKLVQTRAILHYIA--
11: EKYNLL-GKDMKEH--------AQIIMYSE-GTMDLMELIMIYPFLK-------------
11: -GEEKKQRLVEIANK-AKGRYFPAFENVLKTH--GQNFL-VGNQLSMADVQLFEAILM--
11: -----VEE--KVPDALS--G-FPLLQAFKTRI-SNIPTVKTFLAPGSKRKPVPDAKYVED
11: IIKIFYF-------
11: >GTA4_HUMAN
11: ---------------------------------MAARPKLHYPNGRGRMESVRWVLAAAG
11: VEFDEEFLETKEQLYKLQDGN--HLLFQQVPMVEI-----DG--MKLVQTRSILHYIA--
11: DKHNLF-GKNLKER--------TLIDMYVE-GTLDLLELLIMHPFLK-------------
11: -PDDQQKEVVNMAQK-AIIRYFPVFEKILRGH--GQSFL-VGNQLSLADVILLQTILA--
11: -----LEE--KIPNILS--A-FPFLQEYTVKL-SNIPTIKRFLEPGSKKKPPPDEIYVRT
11: VYNIFRP-------
11: >1oe7_A
11: -----------------------------------DHIKVIYFNGRGRAESIRMTLVAAG
11: VNYEDERISF-QDWPKIKP----TIPGGRLPAVKITDNHGHV--KWMVESLAIARYMA--
11: KKHHMM-GGTEEEY--------YNVEKLIG-QAEDLEHEYYKTLMKP-------------
11: -EEEKQKIIKEILNG-KVPVLLDIICESLKAS--TGKLA-VGDKVTLADLVLIAVIDH--
11: -----VTD--LDKEFLT--GKYPEIHKHRENLLASSPRLAKYL---SDRA----------
11: --------------
11: >GTP1_BUFBU
11: -----------------------------------PEYTIIYFNARGRCEAMRMLMADQG
11: AQWKEEVVTS-DDWQKGDLKK--AAVYGQLPGFK------DGD-FTLYQSNAMLRLLA--
11: RNHDLY-GKNPREA--------SLIDMVND-GVEDLRLKYLKMIYQN-------------
11: -YENGKDDYV----K-ALPTNLGHFERLLASNNEGKGFV-VGAHISFADYNLVDLLHN--
11: -----HLV--LAPDCLS--G-FPLLCAYVKRI-SSRPKLEAYLSSDAHKKRPINGNGKQQ
11: --------------
11: >GT28_SCHJA
11: -------------------------------------VKLIYFNGRGRAEPIRMILVAAG
11: VEFEDERIEF-QDWPKIKP----TIPGGRLPIVKITDKRGDV--KTMSESLAIARFIA--
11: RKHNMM-GDTDDEY--------YIIEKMIG-QVEDVESEYHKTLIKP-------------
11: -PEEKEKISKEILNG-KVPILLQAICETLKES--TGNLT-VGDKVTLADVVLIASIDH--
11: -----ITD--LDKEFLT--GKYPEIHKHRKHLLATSPKLAKYL---SERHATAF------
11: --------------
11: >GTS1_ASCSU
11: -----------------------------------PQYKLTYFDIRGLGEGARLIFHQAG
11: VKFEDNRLKR-EDWPALKP----KTPFGQLPLLEV-----DGE--VLAQSAAIYRYLG--
11: RQFGLA-GKTPMEE--------AQVDSIFD-QFKDFMAELRPC-FRV-----LAGFE---
11: -EGDKEKVLKEVAVP-ARDKHLPLLEKFLA--KSGSEYM-VGKSVTWADLVITDSLAS--
11: -----WES--LIPDFLS--G-HLQLKKYIEHV-RELPNIKKWIAERPKTPY---------
11: --------------
11: >GTS9_CAEEL
11: ----------------------------------MVSYKLIYFQSRGNGEIARQVFAFAG
11: QEFIDERISK-EQWAEIKN----MTPFGQVPVLEV-----DGR--QLAQSITIVRYLS--
11: KQFGIS-GKSSWEE--------AQVDALGD-QFKDYRVEARPF-FRA-----KMGFS---
11: -DGDVDQLYKDLFVP-AFNKMYSIFTESLK--SSGSGFL-VGDSLTWMDLAIAQHSAD--
11: -----LLE--ADGKILD--T-FLEMKDHQKKI-HSIPNVKKWIEKRPVTSR---------
11: --------------
11: >GTS3_CAEEL
11: ----------------------------------MVHYKLTYFNARGLAEISRQLFHMAG
11: VEFEDERINE-EKFSQLKP----TFPSGQVPILCI-----DGA--QFSQSTAIARYLA--
11: RKFGFV-GQTAEEE--------LQADEVVD-TFKDFIESFRKFVIAV-----LSGES---
11: -EEILKNIREEVIKP-AVKTYTAYLKAILE--KSSSGYL-VGNELTWADLVIADNLTT--
11: -----LIN--AELLDIE--N-DKLLKEFREKI-IETPKLKEWLAKRPETRF---------
11: --------------
11: >GTS5_CAEEL
11: ----------------------------------MVSYKLTYFNGRGAGEVSRQIFAYAG
11: QQYEDNRVTQ-EQWPALKETC--AAPFGQLPFLEV-----DGK--KLAQSHAIARFLA--
11: REFKLN-GKTAWEE--------AQVNSLAD-QYKDYSSEARPY-FYA-----VMGFG---
11: -PGDVETLKKDIFLP-AFEKFYGFLVNFLK--ASGSGFL-VGDSLTWIDLAIAQHSAD--
11: -----LI---AKGGDFS--K-FPELKAHAEKI-QAIPQIKKWIETRPVTPF---------
11: --------------
11: >GTS6_CAEEL
11: ----------------------------------MVHYKLVYFPLRARAEIARQIFAYAG
11: QDYSEENLSF-EQWPARKN----NTPFGQLPILEV-----DGK--PLGQSYAIARYLA--
11: REFGIA-GQNDTEA--------AEVDAIAD-QFKDYLNDVSPY-LTV-----LAGFK---
11: -PGDKDQLRTDVFVP-AFKKNFEFFENILA--SNHSGFF-VGNSLTWVDLLISQHVQD--
11: -----ILD--KDLAVVE--E-FKKVLAHRKKV-QSIDRIQKYIANRPDYPF---------
11: --------------
11: >GTS4_CAEEL
11: ----------------------------------MPNYKLLYFDARALAEPIRIMFAMLN
11: VPYEDYRVSV-EEWSKLKP----TTPFGQLPILQV-----DGE--QFGQSMSITRYLA--
11: RKFGLA-GKTAEEE--------AYADSIVD-QYRDFIFFFRQFTSSV-----FYGSD---
11: -ADHINKVRFEVVEP-ARDDFLAIINKFLA--KSKSGFL-VGDSLTWADIVIADNLTS--
11: -----LLK--NGFLDFN--K-EKKLEEFYNKI-HSIPEIKNYVATRKDSIV---------
11: --------------
11: >GTS2_CAEEL
11: ----------------------------------MVHYKLMCFDVRGLGEVIRQLFYLGD
11: VSFEDFRVSR-EEFKSLKS----NLPSGQLPVLEI-----DGV--MISQSASIGRFLA--
11: RQYGYS-GKTPTEE--------MQVDSIID-LFKDFMLTFRQFFFAV-----IHGYP---
11: -EYEKERMKRDIVKP-AIKNYFIALNKILL--RSKSGFL-VGDDLTWADLQIADNLST--
11: -----LIN--IRLF-AE--K-EPHLNVFIRKL----------------------------
11: --------------
11: >GTS1_CAEEL
11: ----------------------------------MPHFKFYYFDVRGRGEAIRLLFHLAD
11: EKFDDERFGM-EQWGVLKS----EMPLGQVPVLEI-----DGV--KISQTTAIARYLG--
11: HQFHRA-GTNAVDC--------ARLDMIAE-VIQEFMSSSGMGKFSR----VLLGMI---
11: -QANKEQFFKENVLP-DVEKYAPIVEKFLL-ENGNNGLL-LGDRETWVDVFAAESFSK--
11: -----LIDY-GSPDALD--A-YPHILALINRV-FNHPNIKKYVSQRKATPA---------
11: --------------
11: >GTS_ANOGA
11: -------------------LSSSSISRSSLKCNIMPDYKVYYFNVKALGEPLRFLLSYGN
11: LPFDDVRITR-EEWPALKP----TMPMRQMPVLEV-----DGK--RVHQSLAMCRYVA--
11: KQINLA-GDNPLEA--------LQIDAIVD-TINDFRLKIAIVAYEP------DDMV---
11: -KEKKMVTLNNEVIPFYLTKLNVIAKE-------NNGHL-VLGKPTWADVYFAGILDY--
11: -----L-NYLTKTNLLE--N-FPNLQEVVQKV-LDNENVKAYIAKRPITEV---------
11: --------------
11: >GTS2_MANSE
11: ----------------------------------MPKVVFHYFGAKGWARP-TMLLAYGG
11: QEFEDHRVEY-EQWPEFKP----NTPFGQMPVLEI-----DGK--KYAQSLAISRYLG--
11: RKYGLA-GNDIEED--------FEIDQIVD-FVNDIRASAASVEYEQ------DAAN---
11: -KEVKHEENMKNKYPFQLNKLSEIITK-------NNGFL-ALGRLTWADFVFVGMFDY--
11: -----LKKMLRMPDLEE--Q-YPIFKKPIETV-LSNPKLKAYLDSAPKKEF---------
11: --------------
11: >GT1_ONCVO
11: FITMNFVVEAASSNANQAITSENSIKPKGKLQPQMEKYTLTYFNGRGRAEVIRLLFALAN
11: VSYEDNRITR-DEWKYLKP----RTPFGHVPMLNV-----SGN--VLGESHAIELLLG--
11: GRFGLL-GTNDWEE--------AKIMAVVL-NIDELFQKLIPWTHEK-----NTTKK---
11: -AELFRNLSESDVMP-FLGRY----EKFLK--ESTTGHI-VGNKVSVADLTVFNMLMT--
11: -----L----DDEVKLE--E-YPQLASFVNKI-GQMPGIKEWIKKRPKTYF---------
11: --------------
11: >SC11_OMMSL
11: ----------------------------------MPSYTLYYFNGRGRAEICRMLFAVAS
11: VQYQDKRIEL-AEWTQFKT----KMPCHMLPILEI-----DTE-TQVPQSMAISRYLA--
11: REFGFY-GKNNMDM--------FKVDCLCD-SLFELFNDYMAVYNEK-------------
11: -DAAKKTELQKRFQN-TCLRVLPYMEKTLEANKGGAGWF-IGDQILLCDMMTHAALEN--
11: -----PIQ--ENANLLK--E-YPKLAALRTRV-AAHPKIAAYIKKRNNTAF---------
11: --------------
11: >SC2_OCTDO
11: ----------------------------------MPSYTLNYFNHRGRAEICRMLFAAAG
11: VQYNDRRIET-SEWSNMRS----KMPCSMMPMLDI-----DNR-HQIPQTMAIARYLA--
11: REFGFH-GKNNMEM--------ARVEYISD-CFYDILDDYLRMYQDDNCRMMFQRSG---
11: -DRNGSSEKRTRYQE-TLRRILPFMERTLEMYKSGGQFF-MGDQMTMADMMCYCALEN--
11: -----PIM--EESSLLN--S-YPKLQALRTRV-MSHLKMSPYLKKRSSTEF---------
11: --------------
11: >1aw9_
11: ----------------------------------AP-LKLYGMPLSPNVVRVATVLNEKG
11: LDFEIVPVDLTTGAHKQPDFL-ALNPFGQIPALV------DGD-EVLFESRAINRYIA--
11: SKYASE-GTDLLPATASA----AKLEVWLEVESHHFYPNASPLVFQL----LVRPLL---
11: -GGAPDAAVVDKHAE-QLAKVLDVYEAHLA----RNKYL-AGDEFTLADANHASYLLY--
11: -----L-SKTPKAGLVA--A-RPHVKAWWEAI-VARPAFQKTVAAIPLPPPP--------
11: --------------
11: >GTH3_ARATH
11: -----------------------------------V-LTIYA-PLFASSKRAVVTLVEKG
11: VSFETVNVDLMKGEQRQPEYL-AIQPFGKIPVLV------DGD-YKIFESRAIMRYIA--
11: EKYRSQ-GPDLLGKTIEER---GQVEQWLDVEATSYHPPLLALTLNI----VFAPLM---
11: -GFPADEKVIKESEE-KLAEVLDVYEAQLS----KNEYL-AGDFVSLADLAHLPFTEY--
11: -----LVGPIGKAHLIK--D-RKHVSAWWDKI-SSRAAWKEVSAKYSLPV----------
11: --------------
11: >GTH7_ARATH
11: ----------------------------------MV-VKVYGQIKAANPQRVLLCFLEKD
11: IEFEVIHVDLDKLEQKKPQHL-LRQPFGQVPAIE------DGY-LKLFESRAIARYYA--
11: TKYADQ-GTDLLGKTLEGR---AIVDQWVEVENNYFYAVALPLVMNV----VFKPKS---
11: -GKPCDVALVEELKV-KFDKVLDVYENRLA----TNRYL-GGDEFTLADLSHMPGMRY--
11: -----IMNETSLSGLVT--S-RENLNRWWNEI-SARPAWKKLMELAAY------------
11: --------------
11: >GTH6_ARATH
11: ---------------------------------MAS-IKVHGVPMSTATMRVLATLYEKD
11: LQFELIPVDMRAGAHKQEAHL-ALNPFGQIPALE------DGD-LTLFESRAITQYLA--
11: EEYSEK-GEKLISQDCKKVK--ATTNVWLQVEGQQFDPNASKLAFER----VFKGMF---
11: -GMTTDPAAVQELEG-KLQKVLDVYEARLA----KSEFL-AGDSFTLADLHHLPAIHY--
11: -----LLGTDSKV-LFD--S-RPKVSEWIKKI-SARPAWAKVIDLQKQ------------
11: --------------
11: >GTH_SILCU
11: -----------------------------------T-IKVHGNPRSTATQRVLVALYEKH
11: LEFEFVPIDMGAGGHKQPSYL-ALNPFGQVPALE------DGE-IKLFESRAITKYLAYT
11: HDHQNE-GTSLIHKE-KHEM--AAQLVWEEVEAHQFDPVASKLAWEL----VFKGIF---
11: -GMQTDTTVVEENEA-KLAKVLDVYEARLT----ESEYLGANDSFTLVDLHHLPLLGY--
11: -----LMGTQVKK-LFE--E-RAHVSAWCKKI-LARPSWEKTLALQKQA-----------
11: --------------
11: >GTH1_ARATH
11: ---------------------------------MAG-IKVFGHPASTATRRVLIALHEKN
11: VDFEFVHVELKDGEHKKEPFI-LRNPFGKVPAFE------DGD-FKIFESRAITQYIA--
11: HEFSDK-GNNLLST-GKDM---AIIAMGIEIESHEFDPVGSKLVWEQ----VLKPLY---
11: -GMTTDKTVVEEEEA-KLAKVLDVYEHRLG----ESKYL-ASDHFTLVDLHTIPVIQY--
11: -----LLGTPTKK-LFD--E-RPHVSAWVADI-TSRPSAQKVL-----------------
11: --------------
11: >GTH4_ARATH
11: ----------------------------------AG-IKVFGHPASIATRRVLIALHEKN
11: LDFELVHVELKDGEHKKEPFL-SRNPFGQVPAFE------DGD-LKLFESRAITQYIA--
11: HRYENQ-GTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQ----IFKSIY---
11: -GLTTDEAVVAEEEA-KLAKVLDVYEARLK----EFKYL-AGETFTLTDLHHIPAIQY--
11: -----LLGTPTKK-LFT--E-RPRVNEWVAEI-TKRPASEKVQ-----------------
11: --------------
11: >GTH4_MAIZE
11: ---------------------------------ATPAVKVYGWAISPFVSRALLALEEAG
11: VDYELVPMSRQDGDHRRPEHL-ARNPFGKVPVLE------DGD-LTLFESRAIARHVL--
11: RKHKP----ELLGGGR-LEQT-AMVDVWLEVEAHQLSPPAIAIVVEC----VFAPFL---
11: -GRERNQAVVDENVE-KLKKVLEVYEARLA----TCTYL-AGDFLSLADLSPFTIMHC--
11: -----LMATEYAA-LVH--A-LPHVSAWWQGL-AARPAANKVAQFMPVGAGAPKEQE---
11: --------------
11: >GTH1_MAIZE
11: ---------------------------------A-P-MKLYGAVMSWNLTRCATALEEAG
11: SDYEIVPINFATAEHKSPEHL-VRNPFGQVPALQ------DGD-LYLFESRAICKYAA--
11: RKNKP----ELLREGN-LEEA-AMVDVWIEVEANQYTAALNPILFQV----LISPML---
11: -GGTTDQKVVDENLE-KLKKVLEVYEARLT----KCKYL-AGDFLSLADLNHVSVTLC--
11: -----LFATPYAS-VLD--A-YPHVKAWWSGL-MERPSVQKVAALMKPSA----------
11: --------------
11: >GTH1_WHEAT
11: ---------------------------------MSP-VKVFGHPMLTNVARVLLFLEEVG
11: AEYELVPMDFVAGEHKRPQHV-QLNPFAKMPGFQ------DGD-LVLFESRAIAKYIL--
11: RKYGGTAGLDLLGENSGIEEL-AMVDVWTEVEAQQYYPAISPVVFEC----IIIPFIIPG
11: GGAAPNQTVVDESLE-RLRGVLGIYEARLE----KSRYL-AGDSITFADLNHIPFTFY--
11: -----FMTTPYAK-VFD--D-YPKVKAWWEML-MARPAVQRVCKHMPTEFKLGAQY----
11: --------------
11: >GTH5_ARATH
11: ---------------------------------MVT-VKLYGMAYSTCTKRVYTTAKEIG
11: VDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLE------DEDGTKIYESRAISRYLV--
11: AKYGK--GSSLLPSPSDPKAY-GLFEQAASVEYSSFDPPASSLAYER----VFAGMR---
11: -GLKTNEELAKKYVD-TLNAKMDGYERILS----KQKYL-AGNDFTLADLFHLPY-GA--
11: -----MVAQLEPT-VLD--S-KPHVKAWWAA--SLRVIPGRLLRNSSKEFM---------
11: --------------
11: >1eem_A
11: ---------------SARSLGKGSAPPGPV---PEGSIRIYSMRFCPFAERTRLVLKAKG
11: IRHEVININLKNKPEWFFK----KNPFGLVPVLENS----QGQ--LIYESAITCEYLD--
11: EAYP---GKKLLPDDPYEK---ACQKMILE-LFSKVPSLVGSFIRSQ-------------
11: -N-KEDYAGLKE----EFRKEFTKLEEVLTNK--KTTFF-GGNSISMIDYLIWPWFER--
11: -----LEAM-KLNECVD--H-TPKLKLWMAAM-KEDPTVSALLTSEKDWQGFLE-LYLQN
11: SPEACDYGL-----
11: >GTO1_MOUSE
11: -----------MSGESSRSLGKGSAPPGPV---PEGQIRVYSMRFCPFAQRTLMVLKAKG
11: IRHEVININLKNKPEWFFE----KNPLGLVPVLENS----QGH--LVTESVITCEYLD--
11: EAYP---EKKLFPDDPYKK---ARQKMTLE-SFSKVPPLIASFVRSK-------------
11: -R-KEDSPNLRE----ALENEFKKLEEGMDNY--K-SFL-GGDSPSMVDYLTWPWFQR--
11: -----LEAL-ELKECLA--H-TPKLKLWMAAM-QQDPVASSHKIDAKTYREYLN-LYLQD
11: SPEACDYGL-----
11: >GTO2_HUMAN
11: -----------MSGDATRTLGKGSQPPGPV---PEGLIRIYSMRFCPYSHRTRLVLKAKD
11: IRHEVVNINLRNKPEWYYT----KHPFGHIPVLETS----QCQ--LIYESVIACEYLD--
11: DAYP---GRKLFPYDPYER---ARQKMLLE-LFCKVPHLTKECLVAL-------------
11: -RCGRECTNLKA----ALRQEFSNLEEILEYQ--NTTFF-GGTCISMIDYLLWPWFER--
11: -----LDVY-GILDCVS--H-TPALRLWISAM-KWDPTVCALLMDKSIFQGFLN-LYFQN
11: NPNAFDFGLC----
11: >YKJ3_CAEEL
11: -------------------MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKN
11: IPSDVINVHLQEKPDWYFS----KHYKGQVPTLEHD----EGK-KHVIESAVIPEYLD--
11: DIYP---ETRILPTDPYEK---VQQKLLLDRISGQVSPAFYGVVQAV-------------
11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY
11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS
11: PNYDYGLTKLSETI
11/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.35 sec
test 12
Start 12: DSSIM_takes_a_min
12: Test command: /build/reproducible-path/kalign-3.4.0/obj-sse4.1/tests/dssim
12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
12: Test timeout computed to be: 1500
12: [2025-02-28 14:06:58] : LOG : DSSim - a simplistic sequence simulator.
12: [2025-02-28 14:06:58] : LOG : Protein alignments - 20 seq
12:
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
12: [2025-02-28 14:09:34] : LOG : Protein alignments - 1000 seq
12:
[ ] 0%
[===== ] 10%
[========== ] 20%
[=============== ] 30%
[==================== ] 40%
[========================= ] 50%
[============================== ] 60%
[=================================== ] 70%
[======================================== ] 80%
[============================================= ] 90%
[==================================================] 100%
12: [2025-02-28 14:11:47] : LOG : Protein alignments - 10000 seq
12:
[ ] 0%
[========================= ] 50%
[==================================================] 100%
12: [2025-02-28 14:13:45] : LOG : DNA alignments - 20 seq
12:
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 0%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[ ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 1%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 2%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[= ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 3%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 4%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 5%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 6%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[=== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 7%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 8%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[==== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 9%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 10%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[===== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 11%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 12%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[====== ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 13%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 14%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======= ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 15%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 16%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[======== ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 17%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 18%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========= ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 19%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 20%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 21%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 22%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[=========== ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 23%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 24%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============ ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 25%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 26%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============= ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 27%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 28%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 29%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 30%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[=============== ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 31%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 32%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================ ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 33%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 34%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================= ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 35%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 36%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 37%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 38%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[=================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 39%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 40%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[==================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 41%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 42%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[===================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 43%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 44%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[====================== ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 45%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 46%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================= ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 47%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 48%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[======================== ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 49%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 50%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================= ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 51%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 52%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 53%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 54%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[=========================== ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 55%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 56%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================ ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 57%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 58%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================= ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 59%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 60%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 61%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 62%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[=============================== ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 63%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 64%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================ ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 65%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 66%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================= ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 67%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 68%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 69%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 70%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[=================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 71%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 72%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[==================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 73%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 74%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[===================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 75%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 76%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[====================================== ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 77%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 78%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================= ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 79%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 80%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[======================================== ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 81%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 82%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================= ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 83%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 84%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 85%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 86%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[=========================================== ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 87%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 88%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================ ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 89%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 90%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================= ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 91%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 92%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 93%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 94%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[=============================================== ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 95%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 96%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================ ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 97%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 98%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[================================================= ] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 99%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
12: [2025-02-28 14:16:20] : LOG : DNA alignments - 1000 seq
12:
[ ] 0%
[===== ] 10%
[========== ] 20%
[=============== ] 30%
[==================== ] 40%
[========================= ] 50%
[============================== ] 60%
[=================================== ] 70%
[======================================== ] 80%
[============================================= ] 90%
[==================================================] 100%
12: [2025-02-28 14:17:40] : LOG : DNA alignments - 10000 seq
12:
[ ] 0%
[========================= ] 50%
[==================================================] 100%
12/12 Test #12: DSSIM_takes_a_min ................ Passed 695.57 sec
100% tests passed, 0 tests failed out of 12
Total Test time (real) = 743.71 sec
make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/kalign/
cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/libkalign.a
-- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/include/kalign/kalign.h
-- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/include/kalign/kalign_export.h
-- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignTargets.cmake
-- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignTargets-none.cmake
-- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignConfig.cmake
-- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/lib/x86_64-linux-gnu/cmake/kalign/kalignConfigVersion.cmake
-- Installing: /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/bin/kalign
make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-x86_64-linux-gnu'
debian/rules execute_after_dh_install
make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0'
rm -rf debian/kalign/usr/lib/x86_64-linux-gnu/
dh_install obj-x86_64-linux-gnu/src/kalignfmt usr/bin
mkdir -p debian/kalign/usr/lib/kalign/bin
cp obj-avx2/src/kalign debian/kalign/usr/lib/kalign/kalign-avx2
cp obj-avx/src/kalign debian/kalign/usr/lib/kalign/kalign-avx
cp obj-sse4.1/src/kalign debian/kalign/usr/lib/kalign/kalign-sse4.1
cp obj-avx2/src/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-avx2
cp obj-avx/src/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-avx
cp obj-sse4.1/src/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-sse4.1
mv debian/kalign/usr/bin/kalign debian/kalign/usr/lib/kalign/kalign-plain
mv debian/kalign/usr/bin/kalignfmt debian/kalign/usr/lib/kalign/kalignfmt-plain
dh_install -pkalign debian/bin/simd-dispatch /usr/lib/kalign/bin
cd /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/bin && \
ln -s ../lib/kalign/bin/simd-dispatch kalign
cd /build/reproducible-path/kalign-3.4.0/debian/kalign/usr/bin && \
ln -s ../lib/kalign/bin/simd-dispatch kalignfmt
make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0'
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
debian/rules override_dh_gencontrol
make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0'
dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-2), "
make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0'
dh_md5sums
dh_builddeb
dpkg-deb: building package 'kalign-dbgsym' in '../kalign-dbgsym_3.4.0-1_amd64.deb'.
dpkg-deb: building package 'kalign' in '../kalign_3.4.0-1_amd64.deb'.
dpkg-genbuildinfo --build=binary -O../kalign_3.4.0-1_amd64.buildinfo
dpkg-genchanges --build=binary -O../kalign_3.4.0-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2863268 and its subdirectories
I: Current time: Fri Feb 28 02:19:25 -12 2025
I: pbuilder-time-stamp: 1740752365
Fri Feb 28 14:19:27 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net.
Fri Feb 28 14:19:27 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net.
Fri Feb 28 14:23:23 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net.
Fri Feb 28 14:23:23 UTC 2025 I: kalign_3.4.0-1_amd64.changes:
Format: 1.8
Date: Tue, 02 Apr 2024 13:49:50 +0200
Source: kalign
Binary: kalign kalign-dbgsym
Architecture: amd64
Version: 1:3.4.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
kalign - Global and progressive multiple sequence alignment
Changes:
kalign (1:3.4.0-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* d/patches: disable pass-proper-flags.patch for now.
Checksums-Sha1:
1899523a6b8fa48735e00fff27f66470b52c12e0 669136 kalign-dbgsym_3.4.0-1_amd64.deb
26872ffa184f72f7aee521c281153ebe7d6c81fb 5881 kalign_3.4.0-1_amd64.buildinfo
53f6bb30b9e35ebeb0be037086fde7ee39464d81 137576 kalign_3.4.0-1_amd64.deb
Checksums-Sha256:
304ffbb07abba0d9f5043c50a2940cbe58cb5b218fba361b4de1826f8c27c659 669136 kalign-dbgsym_3.4.0-1_amd64.deb
2a152a37fe2364c8fc769e65fe32dcca32a986c24cf07be97e949ce672174636 5881 kalign_3.4.0-1_amd64.buildinfo
5291e432f95749985275c5221d851288a231b4505d06367d0d82b2d4bea5d373 137576 kalign_3.4.0-1_amd64.deb
Files:
d8d44acfedc70a3bf0c56db0965dcc3a 669136 debug optional kalign-dbgsym_3.4.0-1_amd64.deb
1893b9a170b3dc86b59307618a4741d6 5881 science optional kalign_3.4.0-1_amd64.buildinfo
8292f156dd35c648096fa9363a9234ce 137576 science optional kalign_3.4.0-1_amd64.deb
Fri Feb 28 14:23:25 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_23-48419.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Mf9kCsPa/kalign_3.4.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Mf9kCsPa/kalign_3.4.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Mf9kCsPa/kalign_3.4.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Mf9kCsPa/b1/kalign_3.4.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Mf9kCsPa/b2/kalign_3.4.0-1_amd64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 225ms
CPU time consumed: 224ms
Fri Feb 28 14:23:25 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Fri Feb 28 14:23:25 UTC 2025 I: kalign from trixie built successfully and reproducibly on amd64.
Fri Feb 28 14:23:26 UTC 2025 I: Submitting .buildinfo files to external archives:
Fri Feb 28 14:23:26 UTC 2025 I: Submitting 8.0K b1/kalign_3.4.0-1_amd64.buildinfo.asc
Fri Feb 28 14:23:28 UTC 2025 I: Submitting 8.0K b2/kalign_3.4.0-1_amd64.buildinfo.asc
Fri Feb 28 14:23:30 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Feb 28 14:23:30 UTC 2025 I: Done submitting .buildinfo files.
Fri Feb 28 14:23:30 UTC 2025 I: Removing signed kalign_3.4.0-1_amd64.buildinfo.asc files:
removed './b1/kalign_3.4.0-1_amd64.buildinfo.asc'
removed './b2/kalign_3.4.0-1_amd64.buildinfo.asc'