Tue Feb 25 21:31:20 UTC 2025 I: starting to build libbio-cluster-perl/trixie/amd64 on jenkins on '2025-02-25 21:30' Tue Feb 25 21:31:20 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_14/33657/console.log Tue Feb 25 21:31:20 UTC 2025 I: Downloading source for trixie/libbio-cluster-perl=1.7.3-6 --2025-02-25 21:31:20-- http://deb.debian.org/debian/pool/main/libb/libbio-cluster-perl/libbio-cluster-perl_1.7.3-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2201 (2.1K) [text/prs.lines.tag] Saving to: ‘libbio-cluster-perl_1.7.3-6.dsc’ 0K .. 100% 355M=0s 2025-02-25 21:31:20 (355 MB/s) - ‘libbio-cluster-perl_1.7.3-6.dsc’ saved [2201/2201] Tue Feb 25 21:31:20 UTC 2025 I: libbio-cluster-perl_1.7.3-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-cluster-perl Binary: libbio-cluster-perl Architecture: all Version: 1.7.3-6 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-Cluster Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libbio-cluster-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-cluster-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: perl, libbio-perl-perl, libxml-sax-perl, libtest-most-perl, libbio-variation-perl Package-List: libbio-cluster-perl deb perl optional arch=all Checksums-Sha1: fd457abb417cd02daa2d9fd679f74aa372974e08 58304 libbio-cluster-perl_1.7.3.orig.tar.gz 3ad3a0be46ebcac0abd0501a052975daad9f909c 2296 libbio-cluster-perl_1.7.3-6.debian.tar.xz Checksums-Sha256: 1967fb3899b92f245b5bf6cb64ef076fc3f8427b1a96ca5f7b74d220b6191fbb 58304 libbio-cluster-perl_1.7.3.orig.tar.gz 9ba3e4d2ad5f9d3b62b5156b8e9e05949ab1c267c0f495349852bbe7260dd153 2296 libbio-cluster-perl_1.7.3-6.debian.tar.xz Files: 9a1b88476a3fe576ca6749b98aff3453 58304 libbio-cluster-perl_1.7.3.orig.tar.gz 0aba216206f1d7d942ae86057d7f1b08 2296 libbio-cluster-perl_1.7.3-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmJAOAoUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpg8g//WvwchPxH77MokJHH4sPOQovPLwnD C6bCFgzH7dlNNMf39cdS9mn4V1SwIRLU22gp6a3F9qii+yaxLO+ErCkC9HSRL25L O1kPaJP3VGVswKkTgMqwAB3nIEzjVO6rZgjrwfRB194cno5Y/Y+8z3Fa6Dfj+cWP AWR6BwBFlcdOXMU4M9CMC6oyesyKZnDmV7TBxGg0q/bhxp4JVa26anbRy5pJjGR3 vlMXkwiCARgWKwx16HJFVAxsZrPuScqfPLV2KmW26rATr5nkRfbw7H3ZmZ7WWHVG 5ApAbU5Ijpu+Vf1G+vL4Qv5dBkjVodBy4oEL96l0lm634CockjgCbSoNBD9dxA0s yzKD+xgelORTTs36kQVcJpaje/IfRViSXel58tO8P8rYdAAQuVeJYgH2uMFciHNQ Q7zZ5gW6D/h70Q7tOncRoiWLNA5bkfRBPWkTshrjhIk/iHyLyl/9JgCuSes+BUeT biAqM1/HOfd2YZ9QRtqeA9VdWPIEGmKEQ7cflg9mEtNQDBtqkI9konvjrcAEJx+T krw5J11UFv75kBcVH8IqaTNBGHJGDBQsBPcj2Qlu9LZrWHR5ryDBS+CPqnJLYspS CVTHiDQ78x1nzeBIRaZ9vkyD8mHuOVB6zcQkB+sly+3ME6kuzSpU4zUo99vjpxQR Cnjt0IwiOjC+IBA= =sGra -----END PGP SIGNATURE----- Tue Feb 25 21:31:20 UTC 2025 I: Checking whether the package is not for us Tue Feb 25 21:31:20 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Tue Feb 25 21:31:20 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Tue Feb 25 21:33:09 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Mar 30 15:54:21 -12 2026 I: pbuilder-time-stamp: 1774929261 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-cluster-perl_1.7.3-6.dsc] I: copying [./libbio-cluster-perl_1.7.3.orig.tar.gz] I: copying [./libbio-cluster-perl_1.7.3-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbio-cluster-perl_1.7.3-6.dsc: unsupported subcommand dpkg-source: info: extracting libbio-cluster-perl in libbio-cluster-perl-1.7.3 dpkg-source: info: unpacking libbio-cluster-perl_1.7.3.orig.tar.gz dpkg-source: info: unpacking libbio-cluster-perl_1.7.3-6.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3648127/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='ef7c399c92404f629a582128a880e214' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3648127' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VcnWUrZB/pbuilderrc_29ro --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VcnWUrZB/b1 --logfile b1/build.log libbio-cluster-perl_1.7.3-6.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3648127/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), perl, libbio-perl-perl, libxml-sax-perl, libtest-most-perl, libbio-variation-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19802 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-sax-perl; however: Package libxml-sax-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-variation-perl; however: Package libbio-variation-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libbio-variation-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libproc2-0{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-charwidth-perl{a} libtext-diff-perl{a} libtext-wrapi18n-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-twig-perl{a} libxml-writer-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} procps{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libtext-iconv-perl libtie-ixhash-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-simple-perl libxml-xpath-perl libxml-xpathengine-perl linux-sysctl-defaults lynx perl-tk psmisc wget 0 packages upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 28.7 MB of archives. After unpacking 101 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20241223 [164 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 18 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0050 [42.7 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 30 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 59 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.77-1 [183 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libxml-twig-perl all 1:3.52-3 [177 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 72 http://deb.debian.org/debian trixie/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Fetched 28.7 MB in 5s (6369 kB/s) Preconfiguring packages ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19802 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. 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Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3+b1) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... 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Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.5.4-3) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up ucf (3.0050) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-7) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.24.1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libbio-variation-perl (1.7.5-3) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-cluster-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-cluster-perl_1.7.3-6_source.changes dpkg-buildpackage: info: source package libbio-cluster-perl dpkg-buildpackage: info: source version 1.7.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-cluster-perl-1.7.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-cluster-perl-1.7.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Cluster Writing MYMETA.yml and MYMETA.json dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' cp lib/Bio/Cluster.pm blib/lib/Bio/Cluster.pm cp lib/Bio/ClusterIO.pm blib/lib/Bio/ClusterIO.pm cp lib/Bio/ClusterIO/dbsnp.pm blib/lib/Bio/ClusterIO/dbsnp.pm cp lib/Bio/ClusterI.pm blib/lib/Bio/ClusterI.pm cp lib/Bio/Cluster/UniGeneI.pm blib/lib/Bio/Cluster/UniGeneI.pm cp lib/Bio/Cluster/UniGene.pm blib/lib/Bio/Cluster/UniGene.pm cp lib/Bio/Cluster/SequenceFamily.pm blib/lib/Bio/Cluster/SequenceFamily.pm cp lib/Bio/ClusterIO/unigene.pm blib/lib/Bio/ClusterIO/unigene.pm cp lib/Bio/Cluster/ClusterFactory.pm blib/lib/Bio/Cluster/ClusterFactory.pm cp lib/Bio/Cluster/FamilyI.pm blib/lib/Bio/Cluster/FamilyI.pm Manifying 10 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' dh_auto_test make -j42 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... 1..10 ok 1 - Bio/Cluster.pm loaded ok ok 2 - Bio/Cluster/ClusterFactory.pm loaded ok ok 3 - Bio/Cluster/FamilyI.pm loaded ok ok 4 - Bio/Cluster/SequenceFamily.pm loaded ok ok 5 - Bio/Cluster/UniGene.pm loaded ok ok 6 - Bio/Cluster/UniGeneI.pm loaded ok ok 7 - Bio/ClusterI.pm loaded ok ok 8 - Bio/ClusterIO.pm loaded ok ok 9 - Bio/ClusterIO/dbsnp.pm loaded ok ok 10 - Bio/ClusterIO/unigene.pm loaded ok ok t/author-mojibake.t .... skipped: these tests are for testing by the author t/author-pod-syntax.t .. skipped: these tests are for testing by the author t/Cluster-UniGene.t .... 1..2 ok 1 - use Bio::Cluster::UniGene; ok 2 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::AnnotatableI' ok t/ClusterIO-unigene.t .. 1..73 ok 1 - use Bio::ClusterIO; ok 2 - new Bio::ClusterIO object defined ok 3 ok 4 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok 5 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::ClusterI' ok 6 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::IdentifiableI' ok 7 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::DescribableI' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::PrimarySeqI' ok 49 ok 50 ok 51 - annotation object defined ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::PrimarySeqI' ok 67 ok 68 - next cluster ok 69 ok 70 ok 71 ok 72 ok 73 ok t/ClusterIO.t .......... 1..12 ok 1 - use Bio::ClusterIO; ok 2 - use Bio::Cluster::ClusterFactory; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok 12 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok t/SequenceFamily.t ..... 1..17 ok 1 - use Bio::SeqIO; ok 2 - use Bio::Cluster::SequenceFamily; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok All tests successful. Files=7, Tests=114, 2 wallclock secs ( 0.07 usr 0.01 sys + 1.43 cusr 0.28 csys = 1.79 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-cluster-perl/ make -j42 install DESTDIR=/build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' Manifying 10 pod documents Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/FamilyI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGeneI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGene.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/ClusterFactory.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/SequenceFamily.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/unigene.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/dbsnp.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::dbsnp.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::UniGene.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::UniGeneI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::FamilyI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::unigene.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::SequenceFamily.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::ClusterFactory.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-cluster-perl' in '../libbio-cluster-perl_1.7.3-6_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-cluster-perl_1.7.3-6_amd64.buildinfo dpkg-genchanges --build=binary -O../libbio-cluster-perl_1.7.3-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3648127 and its subdirectories I: Current time: Mon Mar 30 15:56:07 -12 2026 I: pbuilder-time-stamp: 1774929367 Tue Feb 25 21:33:09 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Tue Feb 25 21:33:09 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Tue Feb 25 21:34:32 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Tue Feb 25 21:34:32 UTC 2025 I: libbio-cluster-perl_1.7.3-6_amd64.changes: Format: 1.8 Date: Sun, 27 Mar 2022 11:18:53 +0200 Source: libbio-cluster-perl Binary: libbio-cluster-perl Architecture: all Version: 1.7.3-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libbio-cluster-perl - BioPerl cluster modules Changes: libbio-cluster-perl (1.7.3-6) unstable; urgency=medium . * Team upload. * d/control: depend on libxml-sax-perl, needed by needed by Bio::ClusterIO, fixing autopkgtest failure in the process. * Standards-Version: 4.6.0 (routine-update) * watch file standard 4 (routine-update) Checksums-Sha1: 78866fc6718a6fc4c96e886543b60e5235706dc7 50692 libbio-cluster-perl_1.7.3-6_all.deb b4548c449f6732b4d915d03508271059805a3f4a 6408 libbio-cluster-perl_1.7.3-6_amd64.buildinfo Checksums-Sha256: d31b8d8a82bd37d9e122afb43e8a10739a50ef1762931c27f01922e04cfecdc0 50692 libbio-cluster-perl_1.7.3-6_all.deb 4161935bd8cb6bbe0f121f6a2946b4127bb795c5d1210af9670c8f1ec1acb0fb 6408 libbio-cluster-perl_1.7.3-6_amd64.buildinfo Files: 7840dcbc7cae7342ce754532f525319c 50692 perl optional libbio-cluster-perl_1.7.3-6_all.deb d16429f440cb7c6094aeef1a988a8e90 6408 perl optional libbio-cluster-perl_1.7.3-6_amd64.buildinfo Tue Feb 25 21:34:33 UTC 2025 I: diffoscope 289 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_14-33657.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.VcnWUrZB/libbio-cluster-perl_1.7.3-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.VcnWUrZB/libbio-cluster-perl_1.7.3-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.VcnWUrZB/libbio-cluster-perl_1.7.3-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.VcnWUrZB/b1/libbio-cluster-perl_1.7.3-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.VcnWUrZB/b2/libbio-cluster-perl_1.7.3-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 218ms CPU time consumed: 218ms Tue Feb 25 21:34:34 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Tue Feb 25 21:34:34 UTC 2025 I: libbio-cluster-perl from trixie built successfully and reproducibly on amd64. Tue Feb 25 21:34:35 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Feb 25 21:34:35 UTC 2025 I: Submitting 8.0K b1/libbio-cluster-perl_1.7.3-6_amd64.buildinfo.asc Tue Feb 25 21:34:38 UTC 2025 I: Submitting 8.0K b2/libbio-cluster-perl_1.7.3-6_amd64.buildinfo.asc Tue Feb 25 21:34:40 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Feb 25 21:34:40 UTC 2025 I: Done submitting .buildinfo files. Tue Feb 25 21:34:40 UTC 2025 I: Removing signed libbio-cluster-perl_1.7.3-6_amd64.buildinfo.asc files: removed './b1/libbio-cluster-perl_1.7.3-6_amd64.buildinfo.asc' removed './b2/libbio-cluster-perl_1.7.3-6_amd64.buildinfo.asc'